ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Qingdao Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_level: Contig

ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: Center for Microbial Communities


gtdb_representative: f

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Latilactobacillus fragifolii

ncbi_submitter: UANTW


ncbi_isolation_source: Distal colon

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 166

ncbi_submitter: Oregon State University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Boston

ncbi_isolation_source: ocular liquid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Massachusetts Eye and Ear Infirmary


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: diarrheal snake diarrheal snake in Hunan

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Hunan Agricultural University


ncbi_organism_name: Burkholderia sp. BCC1970

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Japan

ncbi_isolation_source: Soil from factory (dye work)

ncbi_organism_name: Paenarthrobacter ureafaciens

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: Canterbury region

ncbi_submitter: The University of Auckland


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI-Shenzhen


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: raw milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of New South Wales


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Charles University in Pilsen


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Japan: Osaka

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Department of Molecular Bacteriology,  Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Paenibacillus ihbetae

ncbi_submitter: BGI


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Queensland


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_strain_identifiers: RU1 BHI8

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_country: Poland: Wroclaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Xanthobacter autotrophicus DSM 597

ncbi_strain_identifiers: RH 10

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Agrobacterium rubi

ncbi_submitter: Oregon State University


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Microcoleus sp. S36b_A4

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG14103

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_level: Chromosome

ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: China: Beijing

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; pilot scale (60m3) reactor for the removal of ammonium from the effluent from a primary clarifier of a full-scale WWTP.

ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-5454

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Ralstonia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC048253

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2812

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2812


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Oxford


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: Ecuador: Guayaquil

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Guayaquil


ncbi_organism_name: Pseudomonas nitroreducens


ncbi_country: USA: Freshwater City; LA

ncbi_isolation_source: coastal brackish surface water

ncbi_organism_name: Gammaproteobacteria bacterium LSUCC0112

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_submitter: University of Lethbridge


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Candidatus Brocadia sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus WAMC6080

ncbi_submitter: Broad Institute


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6508

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bifidobacterium pullorum


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Methyloglobulus sp.

ncbi_submitter: Monash University


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterovirga sp. GCM10030262

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


gtdb_type_species_of_genus: t

ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Parma


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC102347

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora purpureochromogenes


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia pseudosolanacearum FQY_4

ncbi_submitter: Guizhou Tobacco Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia pseudosolanacearum;x__Ralstonia pseudosolanacearum FQY_4


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Guangdong; Guangzhou

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 19ft depth

ncbi_organism_name: Candidatus Sediminicultor quintus

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Sediminicultor;s__Candidatus Sediminicultor quintus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Sediminicultor;s__Candidatus Sediminicultor quintus


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Singapore

ncbi_isolation_source: Wet market

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Scambus nigricans


ncbi_organism_name: Streptomyces sp. NBC_00569

ncbi_submitter: Technical University of Denmark


ncbi_country: Hong Kong

ncbi_isolation_source: atmospheric cloud water

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: Australia: Cairns; Queensland

ncbi_organism_name: Candidatus Phytoplasma melaleucae

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrXXV (Weeping tea tree witches'-broom group);s__Candidatus Phytoplasma melaleucae


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Leicester


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfobacteraceae bacterium


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 260

ncbi_submitter: SC


ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Kazakhstan

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Shantou University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: University of Toronto


ncbi_country: China

ncbi_isolation_source: gold mine

ncbi_organism_name: Paenibacillus taichungensis

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Tepidamorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Kyrpidia spormannii

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Winogradskyella sp. UBA3174

ncbi_submitter: University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Japan: Nagasaki City

ncbi_isolation_source: soil

ncbi_organism_name: Lentzea aerocolonigenes

ncbi_strain_identifiers: NRRL B-3298

ncbi_submitter: University of Illinois


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA41

ncbi_submitter: Broad Institute


ncbi_country: Japan


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_assembly_name: freshwater MAG --- LJ_bin-2511

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Colwellia sp. MB3u-41

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Leucobacter sp. 4J7B1

ncbi_organism_name: Leucobacter sp. 4J7B1

ncbi_submitter: University of Granada


ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaerococcus sp.


ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_organism_name: Sphingomonas sp. DC3000-4b2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Pseudomonas sp. MYb193

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: human lymph node

ncbi_organism_name: Mycobacterium intracellulare ATCC 13950

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;x__Mycobacterium intracellulare ATCC 13950


ncbi_country: USA: South Carolina

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Biogas Institute of Ministry of Agriculture and Rual Affairs


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Lentzea nigeriaca

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter sp.


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: New Zealand

ncbi_isolation_source: culture

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_country: Malaysia: Negeri Sembilan

ncbi_isolation_source: ETT

ncbi_submitter: Institute for medical research


ncbi_country: Greece

ncbi_organism_name: Olivibacter sitiensis DSM 17696

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Olivibacter;s__Olivibacter sitiensis;x__Olivibacter sitiensis DSM 17696


ncbi_organism_name: Streptomyces sp. NPDC052051

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: metagenome

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_submitter: Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Salinibacter ruber

ncbi_submitter: Centre for Genomic Regulation (CRG)


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom: Reading

ncbi_organism_name: Pseudomonas fluorescens

ncbi_strain_identifiers: ICMP 3512

ncbi_submitter: University of Toronto


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: France

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: UNIVERSITY OF TEXAS SOUTHWESTERN


ncbi_country: China: Guangdong Province

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ochrobactrum sp. A-1

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Azospirillum fermentarium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Lactobacillus panisapium

ncbi_submitter: Sichuan University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: AOP18_D1_surf _bin _18

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP18_D1_surf _bin _18

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella sp. WOUb02

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: General Hospital of Ningxia Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Deinococcota bacterium

ncbi_submitter: Montana State University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10762

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Stenotrophomonas geniculata

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: EMG


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM22178

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: Corynebacterium durum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_assembly_name: Rumen uncultured genome RUG14705


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: USA: Bethesda

ncbi_isolation_source: stool

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: Arctic Ocean

ncbi_isolation_source: Arctic seawater

ncbi_organism_name: Roseovarius pelagicus

ncbi_submitter: Seoul National University


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Alcaligenes aquatilis

ncbi_submitter: University of Technology Sydney


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: SAHMRI


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University


ncbi_country: USA: Arizona ex Costa Rica

ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: East China Normal University


ncbi_country: Malaysia: Kelantan

ncbi_strain_identifiers: PMTB

ncbi_submitter: Institute of Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Pasteurella;s__Pasteurella multocida;sb__Pasteurella multocida subsp. multocida;x__Pasteurella multocida subsp. multocida str. PMTB


ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: Henan University of Animal Husbandry and Economy


ncbi_country: China: Tianjin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tianjin Medical University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: University of Chicago


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Bbin13

ncbi_submitter: JAMSTEC


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Nanjing University


ncbi_country: Russia: Moscow

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Japan

ncbi_organism_name: Staphylococcus intermedius

ncbi_submitter: Utrecht University


ncbi_organism_name: Escherichia coli O86

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Denmark

ncbi_isolation_source: Homo sapiens

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adjame


ncbi_country: Kenya: Kisii

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Italy: Province of Bologna

ncbi_organism_name: Campylobacter vulpis

ncbi_submitter: C. vulpis


ncbi_organism_name: Nitrospinales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ballast tank

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: Candidatus Anaerostipes excrementavium

ncbi_submitter: Quadram Institutte


ncbi_country: South Korea

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Korea National Institute of Health


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Succinivibrio sp.


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H43996

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_organism_name: Chromohalobacter sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Clostridium amylolyticum


ncbi_country: Brazil: Ceara State

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium fragae

ncbi_submitter: University of Trento


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hospital Infantil de Mexico Federico Gomez


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Acuticoccus sediminis

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-489

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA

ncbi_isolation_source: umbilicus

ncbi_organism_name: Staphylococcus epidermidis NIHLM018

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Burkholderia cenocepacia

ncbi_strain_identifiers: DWS 37E-2

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_isolation_source: herbage

ncbi_organism_name: Aeromicrobium fastidiosum

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG_4_9_14_0_2_um_filter_34_50


ncbi_isolation_source: vagina

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Streptomyces sp. NBC_00145

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Kitasatospora cineracea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Institute for Plant Protection, National Agriculture and Food Research Organization

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lacticaseibacillus rhamnosus E800

ncbi_submitter: Helsinki University


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1422S

ncbi_submitter: Broad Institute


ncbi_country: USA: Texas

ncbi_organism_name: Rhizobium sp. 16-488-2b

ncbi_submitter: Oregon State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Parasutterella excrementihominis


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NA 59

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Roseibium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Asaia sp. BMEF1

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: rat gut

ncbi_organism_name: Ruminococcaceae bacterium UBA7166

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-0725

ncbi_submitter: BILS


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_country: New Zealand

ncbi_isolation_source: Post-mortem infection swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massey University


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Blastococcus sp.


ncbi_organism_name: Clostridium celatum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Drinking water

ncbi_organism_name: Raoultella terrigena

ncbi_submitter: SC


ncbi_isolation_source: Anaerobic Digestion Sludge

ncbi_organism_name: Bacteroidales bacterium UBA1064

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1064


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Rhodanobacter ginsengiterrae

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Heilongjiang

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: Umbilical cord secretions

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 2094

ncbi_submitter: University of Pretoria


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Roseovarius atlanticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: San Francisco Bay

ncbi_isolation_source: black mud

ncbi_organism_name: Anaerotignum propionicum DSM 1682

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Nodule of soybean

ncbi_organism_name: Bradyrhizobium liaoningense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Korea: Gyeongsangnam-do

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_country: Nigeria

ncbi_isolation_source: Human Blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: cold seep

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_country: USA: International Space Station

ncbi_isolation_source: Mineral Grit embedded in adhesive paper 3

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-222-05_S3_C3

ncbi_submitter: IGS


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: NY

ncbi_isolation_source: feces seagull

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Czech Republic

ncbi_isolation_source: wastewater

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome hRUG875

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Streptomyces sp. NPDC047042

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Treponema sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Patient47 sputum

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mexico

ncbi_isolation_source: alfalfa herbal tea

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 419639 2-1


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Candidatus Rhodoferax bjergmarkensis

ncbi_submitter: Aalborg University


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: University


ncbi_country: Canada: Manitoba

ncbi_organism_name: Escherichia coli BW25113

ncbi_submitter: University of Manitoba

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli BW25113


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mediterranea sp.

ncbi_submitter: EMG


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Guangdong

ncbi_isolation_source: swine nasal swab

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: South China Agricultural University


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab pre-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC056480


ncbi_organism_name: Neisseria meningitidis LNP27256

ncbi_submitter: Institut Pasteur


ncbi_country: Antarctica: Britannia; Transantarctic Mountains

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. Br18

ncbi_submitter: University of Auckland


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPMP 819

ncbi_submitter: University of Pretoria


ncbi_organism_name: Trichococcus patagoniensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: Wound Right Shoulder EXPLANT STEM

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Switzerland

ncbi_isolation_source: Ear swab

ncbi_organism_name: Macrococcoides canis

ncbi_submitter: University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: Salmonella sp. CQ23WZ0178SAL

ncbi_submitter: Wanzhou CDC


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Xizang

ncbi_isolation_source: hot springs

ncbi_organism_name: Thermus caldilimi

ncbi_submitter: School of Life Science


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Chlamydiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;x__environmental samples;s__uncultured Chlamydiae bacterium


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudooceanicola sp. MF1-13

ncbi_submitter: SUNGKYUNKWAN UNIVERSITY


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Curvibacter sp. AEP1-3

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudomonas sp. PSRC3

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Alistipes avistercoris


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Spain: Mentrida; Toledo

ncbi_isolation_source: whole insect macerate from a laboratory maintained population of field collected O. laevigatus

ncbi_organism_name: Serratia sp. OLMTLW26

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. OLMTLW26


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M35954

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: Streptomyces sp. NPDC005760

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: Wyoming Soil

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: Ohio State university


ncbi_organism_name: Dorea sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Italy

ncbi_isolation_source: swine salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S131

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S131


ncbi_submitter: Zhejiang University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: China

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: CNRS


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: Catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_organism_name: Eubacterium callanderi

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: gut

ncbi_organism_name: Herbiconiux moechotypicola

ncbi_submitter: Institute of Medicinal Biotechnology


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Salmonella enterica CVM N41900-SQ v1.0

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Granulicella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_assembly_name: IMG-taxon 2695421039 annotated assembly

ncbi_organism_name: Flavobacterium haoranii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: JMI Laboratories


ncbi_country: Israel: Mediterranean Sea; Palmahim Disturbance brine pool

ncbi_isolation_source: brine pool

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Neisseria yangbaofengii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_submitter: Harvard University


ncbi_isolation_source: Isolated from commercial product

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chr. Hansen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Spain: Mallorca; Balearic Islands

ncbi_isolation_source: lagooning wastewater treatment plant

ncbi_organism_name: Stutzerimonas stutzeri B1SMN1

ncbi_submitter: University of Balearic Islands

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Stutzerimonas;x__Stutzerimonas stutzeri group;x__Stutzerimonas stutzeri subgroup;s__Stutzerimonas stutzeri;x__Stutzerimonas stutzeri B1SMN1


ncbi_organism_name: Cronobacter sp. EKM101R

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycolicibacterium tokaiense

ncbi_submitter: Nanjing University


ncbi_organism_name: Thermomicrobia bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-526

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: Madagascar

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: RIKEN-BRC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: soil organic matter[ENVO:04000008]

ncbi_organism_name: Bacillus sp. ISL-32

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISL-32


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Psychroflexus salarius

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: blood

ncbi_organism_name: Lactobacillus johnsonii ATCC 33200

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Brucella melitensis NI

ncbi_strain_identifiers: NI

ncbi_submitter: China Agricultrual University


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Belgium

ncbi_isolation_source: Plant

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: University of California


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Bacillus mycoides


ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Sri Lanka: Kandy

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vebleniibacteriota;s__Candidatus Veblenbacteria bacterium RIFOXYD1_FULL_43_11


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterobacter roggenkampii


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Flavobacteriales bacterium UBA1354

ncbi_submitter: University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA

ncbi_isolation_source: black liquor from pulp mill stream

ncbi_organism_name: Paenibacillus glucanolyticus

ncbi_submitter: North Carolina State University


ncbi_country: USA: Northfield

ncbi_isolation_source: Zebrafish tank water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: University of Minnesota, Twin Cities


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Paludibacter sp.


ncbi_organism_name: Synechococcus sp. MIT S9507

ncbi_strain_identifiers: MIT S9507

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Shewanella sp. MF08487

ncbi_submitter: Nofima


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Cypionkella sp.

ncbi_submitter: EMG


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Tengchong; Gumingquan hot spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital affiliated to Zhejiang University School of Medicine


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: larynx

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Enshi City; Hubei Province

ncbi_isolation_source: Selenium rich soil

ncbi_organism_name: Croceibacterium selenioxidans

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA: Denver; CO

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Colorado


ncbi_country: Antarctica

ncbi_isolation_source: microbial mat ULC084

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: ULg


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: USA: FL

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National laboratory for health, environment and food


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Ohio

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_isolation_source: pig manure

ncbi_submitter: Section of Chemical Engineering, Department of Green Technology, University of Southern Denmark


ncbi_country: Spain: Tenerife; Canary Island

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. SSUT112

ncbi_submitter: Universidad de La Laguna


ncbi_organism_name: Penaeicola halotolerans

ncbi_submitter: Shantou University


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Fusobacterium canifelinum

ncbi_submitter: UC Davis


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Toronto

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Yersinia bercovieri


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Oral

ncbi_organism_name: Muribacter muris

ncbi_submitter: King's College London


ncbi_country: Netherlands

ncbi_isolation_source: Dept of Medical Microbiology; University Medical Center Groningen

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: swine

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Egypt

ncbi_isolation_source: cheese (Domiati)

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 1578

ncbi_submitter: Brigham Young University


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: tracheal swab of layer chicken

ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Konkuk university


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Turkey: Adana

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hatay Mustafa Kemal University, Faculty of Veterinary Medicine


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Zhejiang university


ncbi_country: Turkey: Kutahya

ncbi_isolation_source: eye

ncbi_organism_name: Shewanella oncorhynchi

ncbi_submitter: Bursa Uludag University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Georgia Tech


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Lubeck

ncbi_organism_name: Escherichia coli O104:H4 str. 11-03943

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 11-03943


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: VIC9

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: University of queensland


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: Institute of Agricultural Resources and Environment, Guangdong Academy of Agricultural Sciences


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Bartonella henselae

ncbi_submitter: URMITE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium UBA2922

ncbi_submitter: University of Queensland


ncbi_isolation_source: contaminant of a culture medium containing 25% NaCl

ncbi_organism_name: Actinopolyspora halophila DSM 43834

ncbi_submitter: JGI


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Emergencia sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: Philippines: Philippine Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudooceanicola lipolyticus

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. NW893

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Coprovivens sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Coprovivens;x__unclassified Candidatus Coprovivens;s__Candidatus Coprovivens sp.


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG12499

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Acinetobacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavicella sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: anaerobic digested sludge

ncbi_organism_name: Azospira oryzae PS

ncbi_submitter: NORWEGIAN UNIVERSITY OF LIFE SCIENCES


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Breznakia sp. PM6-1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkmenistan: Mary

ncbi_isolation_source: Desert soil

ncbi_organism_name: Saccharopolyspora karakumensis

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Excrementavichristensenella;x__unclassified Candidatus Excrementavichristensenella;s__Candidatus Excrementavichristensenella sp.


ncbi_country: China: Xinxiang

ncbi_isolation_source: sediment

ncbi_organism_name: Flavobacterium sp. H122

ncbi_submitter: Henan Normal University


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: South China Agricultural University


ncbi_country: Iran: Karaj

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: EBI


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Pseudomonas asiatica


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Allobaculum sp.


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: FL; Dry Tortugas

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Halomonas sp. DSH1-27

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Zhejiang University