ncbi_organism_name: Lachnoclostridium sp. An76


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus smithii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Ruminococcus albus

ncbi_submitter: EMBL-EBI


gtdb_representative: t

ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_organism_name: Muribaculum intestinale


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_submitter: SC


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: shandong university


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_assembly_name: freshwater MAG --- MJ110712B_bin-102

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Australimonas brisbanensis

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Dehalococcoidia;o__Candidatus Australimonadales;f__Candidatus Australimonadaceae;g__Candidatus Australimonas;s__Candidatus Australimonas brisbanensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;o__Candidatus Australimonadales;f__Candidatus Australimonadaceae;g__Candidatus Australimonas;s__Candidatus Australimonas brisbanensis

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Shanghai Fisheries Research Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA

ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Rickettsiella isopodorum

ncbi_submitter: University of Waterloo


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Janthinobacterium sp. S3M3

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Inhella sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium 4484_49


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12854

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ruegeria conchae


ncbi_organism_name: uncultured Agathobacter sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: Urine sample from patient with Septicemia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Massachusetts

ncbi_isolation_source: Massachusetts listeriosis outbreak

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: ScottA

ncbi_submitter: ETH Zurich


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum from endotrachea

ncbi_organism_name: Staphylococcus aureus M0567

ncbi_submitter: Broad Institute


ncbi_submitter: Sichuan University


ncbi_country: Poland

ncbi_isolation_source: feces from wild bird

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolate: VTEC

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H70821


ncbi_organism_name: Pseudonocardia autotrophica

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: Spain: Valencia

ncbi_isolation_source: Biofilm clogging water pumps in ice machines

ncbi_organism_name: Methyloversatilis sp.

ncbi_submitter: Darwin Bioprospecting Excellence


ncbi_assembly_name: Rumen uncultured genome RUG10510

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Micrococcus endophyticus

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_strain_identifiers: VHProbi V43

ncbi_submitter: Nutrition &Health Technology Center


ncbi_country: Slovenia: Ljubljana

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S112-43924

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Harvard Medical School


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Poland: Pruszkow

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Modicisalibacter sp. MOD 31.J

ncbi_strain_identifiers: MOD 31.J

ncbi_submitter: UNICAMP


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Aliarcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Fannyhessea vaginae

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: uncultured Olsenella sp.


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Marinobacter sp. HN1S83

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Morganella morganii

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Pseudomonas tritici

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province


ncbi_organism_name: Lelliottia sp. 489

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptomyces sp. NPDC059209

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas sp. MB-090624

ncbi_submitter: Loyola University Chicago


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Borreliella afzelii PKo

ncbi_strain_identifiers: PKo

ncbi_submitter: Vircell S.L.


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS, Western Regional Research Center


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: Hungarian Sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_submitter: Monash University


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_submitter: University of Szeged


ncbi_country: Slovenia

ncbi_isolation_source: Earduct smear

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Canada

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Bangladesh

ncbi_isolation_source: liver

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Dhaka


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2939

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2939


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Halomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Rochester

ncbi_isolation_source: swab of cloaca

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Bacillus sp. C2(2022)

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. C2(2022)


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: FDA


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus KINB6009

ncbi_submitter: Broad Institute


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Johnsonella sp.

ncbi_submitter: EMG


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Merdibacter sp.

ncbi_submitter: Biomin Research Center


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: Germany

ncbi_isolation_source: Clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_assembly_name: Rumen uncultured genome RUG11523

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11025

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: Sewage sample

ncbi_submitter: North South University


ncbi_assembly_name: freshwater MAG --- Erken-D11_bin-1176

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Ruegeria sp.

ncbi_submitter: marine college, shandong university


gtdb_type_species_of_genus: t

ncbi_country: Hungary

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Ignatzschineria larvae DSM 13226

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus sp. CF9-3

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_organism_name: Staphylococcus epidermidis VCU036

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: China Medical University, Taichung, Taiwan


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: unknown

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Centre for Molecular and Biomolecular Informatics (Radboudumc Nijmegen)


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Seattle University


ncbi_country: Spain: Mallorca

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Rothia mucilaginosa


ncbi_organism_name: Escherichia coli KTE20

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Ruegeria haliotis

ncbi_submitter: Insititute of Oceanology, Chinese Academy of Sciences


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Toe web space Swab

ncbi_organism_name: Brevibacterium casei

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Nocardia sp. NBC_00511

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Actinobacillus;s__Actinobacillus pleuropneumoniae;x__Actinobacillus pleuropneumoniae serovar 1;x__Actinobacillus pleuropneumoniae serovar 1 str. 4074


ncbi_organism_name: Gluconobacter oxydans 621H

ncbi_submitter: Gottingen Genomics Laboratory


ncbi_country: Russia: Altai

ncbi_isolation_source: chegen

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: animal feces

ncbi_organism_name: Neomoorella thermoacetica

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_isolation_source: CF Lung

ncbi_organism_name: Bordetella genomosp. 9

ncbi_submitter: University of Michigan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: South Korea: Halla mountain; Jeju island

ncbi_organism_name: Subtercola endophyticus

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: France: Grenoble

ncbi_isolation_source: lungs (tracheal aspirate)

ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Biosciences and Biotechnology Institute of Grenoble - CEA Grenoble


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B282;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: China University of Geosciences


ncbi_country: Germany

ncbi_isolation_source: ocular surface swab

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Marseille

ncbi_isolation_source: dental plaque

ncbi_organism_name: Lachnoanaerobaculum sp. Marseille-Q4761

ncbi_submitter: IHU - MI


ncbi_isolation_source: Marine Phycosphere

ncbi_organism_name: Qipengyuania sp. ABI-127-1

ncbi_submitter: ABI Group


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_assembly_name: LPIBR

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: IBR-UNR


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Thermocrinis albus DSM 14484

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Aquificota;c__Aquificia;o__Aquificales;f__Aquificaceae;g__Thermocrinis;s__Thermocrinis albus;x__Thermocrinis albus DSM 14484


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaplasma ovis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Sphingomonas sp. ASY06-1R

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia sp. WS3074

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Nonomuraea sp. MTCD27

ncbi_submitter: Yildiz Technical University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin6

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: LAG bin6

ncbi_submitter: Monash University


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Rhodobacterales bacterium


ncbi_organism_name: uncultured Desulfohalobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lunds Universitet


ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Methylomarinovum caldicuralii

ncbi_submitter: Super-cutting-edge Grand and Advanced Research (SUGAR) Program, Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: EMG


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: Sydney; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Germany: Bonn; Botanical garden

ncbi_isolation_source: freshwater pond

ncbi_organism_name: Rhodocyclus tenuis

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: bile

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Ningbo First Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Kyung Hee University


ncbi_submitter: EPFL


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: root

ncbi_organism_name: Tardiphaga sp. P9-11

ncbi_submitter: AIT


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: marine

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: Belgium

ncbi_isolation_source: Mango fruit

ncbi_organism_name: Acetobacter senegalensis

ncbi_submitter: Ghent University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Zhejiang

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli H489

ncbi_submitter: Broad Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Dokdonia sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Limnobacter sp. UBA882

ncbi_submitter: University of Queensland


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ireland

ncbi_isolation_source: cheese

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Falsirhodobacter sp. alg1

ncbi_submitter: Waseda University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-08890

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli P0298942.2

ncbi_submitter: IGS


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sputum

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii 1513


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella sp. JB_Kp009

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: seawater

ncbi_organism_name: Moritella marina ATCC 15381

ncbi_submitter: University hospital Essen


ncbi_country: Poland

ncbi_organism_name: Brucella abortus 63/168

ncbi_submitter: Broad Institute


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: South Africa: King Dinuzulu Hospital


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Shigella flexneri

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: EMG


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: tongue oral cavity

ncbi_organism_name: Leptotrichia sp. oral taxon 417

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Fusobacteriati;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia;x__unclassified Leptotrichia;s__Leptotrichia sp. oral taxon 417


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Munich

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Kosakonia sp. LAM2021

ncbi_submitter: Chinese academy of agricultural sciences


ncbi_country: India: Telangana

ncbi_isolation_source: milk

ncbi_organism_name: Brucella abortus

ncbi_submitter: National Dairy Development Board


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_submitter: USUHS


ncbi_submitter: Shanghai Children's Hospital


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_submitter: College of Veterinary Medicine


ncbi_isolation_source: aquatic

ncbi_organism_name: Rhodobacteraceae bacterium LE17

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Sphingomonas sp. BK069


ncbi_isolate: AOP1_B1_coeur _bin _11

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP1_B1_coeur _bin _11

ncbi_submitter: Genoscope


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_assembly_name: Rumen uncultured genome RUG10798

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Franconibacter pulveris 1160

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Sulfurospirillum sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Segatella copri

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_organism_name: Frankiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from MA_RO membrane1

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alloprevotella sp.


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: uncultured Conexibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Wuxi

ncbi_isolation_source: sputum

ncbi_submitter: Ningbo First Hospital


ncbi_country: France: Nantes

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Methylobacterium thuringiense

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Cervical ligament

ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Enterobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus M1244

ncbi_submitter: Broad Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_assembly_name: freshwater MAG --- LJ_bin-2526

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: China: Tangshan

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_country: China: Gansu

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_country: Austria: Vienna

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: ANIWHA


ncbi_country: China: JiangSu

ncbi_isolation_source: Pleural Effusion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Italy

ncbi_isolation_source: oral swab

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: LAC FRN-92

ncbi_submitter: Universita' degli Studi di Catania


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Australia: Victoria

ncbi_isolation_source: liver

ncbi_organism_name: Chlamydia psittaci

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: China: Wenchang

ncbi_isolation_source: coastal sand

ncbi_organism_name: Maribrevibacterium harenarium

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: IA

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_country: Italy: Perugia

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS Mineral Grit embedded in adhesive paper 3 environmental surface

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: Kale

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Chryseolinea sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Klebsiella sp. 129969

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Urinary Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Thailand: Dusit

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_country: USA: Washington

ncbi_isolation_source: marine net tow

ncbi_submitter: Texas A&M University - Corpus Christi


ncbi_isolation_source: burned soil

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Colorado State University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_submitter: University of Milan


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0308R

ncbi_submitter: Broad Institute


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Xiamen

ncbi_isolate: MAG Bin28

ncbi_isolation_source: activated sludge from lab-scale EBPR bioreactor; wastewater treatment plant

ncbi_organism_name: Accumulibacter sp.

ncbi_strain_identifiers: MAG Bin28

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: China: Henan; Kaifeng

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: KF

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- MJ110516B_bin-0860

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Stenotrophomonas acidaminiphila

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4324

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Bacillus cereus group sp. BceL034

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL034


ncbi_organism_name: Uncultured Candidatus Berkiella sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Berkiellales;f__Candidatus Berkiellaceae;g__Candidatus Berkiella;x__environmental samples;s__Uncultured Candidatus Berkiella sp.


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-4349

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Sulfurospirillaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_isolation_source: Caspian Sea

ncbi_organism_name: SAR202 cluster bacterium Casp-Chloro-G2

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium Casp-Chloro-G2


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: McGill University


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Australia

ncbi_organism_name: Prescottella equi

ncbi_submitter: Animal Hygiene, Kitasato University School of Veterinary Medicine


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA

ncbi_isolation_source: environment; food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_country: China

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces microflavus


ncbi_organism_name: Thauera aminoaromatica


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: South Dakota

ncbi_organism_name: Methylomonas subterranea

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: China: Guangdong

ncbi_isolation_source: muscle abscess tissue

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Foshan university


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Sichuan

ncbi_isolation_source: meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Czech Republic

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_country: USA: TX

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Viet Nam: Soc Trang

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_country: Ghana

ncbi_isolation_source: Soft tissue biopsy

ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Academia Sinica


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB10-253

ncbi_submitter: Broad Institute


ncbi_organism_name: Bergeriella denitrificans NBRC 102155

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Pork Chop

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA2100

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA2100


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: mBioClim


ncbi_organism_name: Corynebacterium variabile


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: ulcer

ncbi_organism_name: Escherichia coli

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Minnesota

ncbi_organism_name: Pseudomonas coronafaciens pv. zizaniae

ncbi_strain_identifiers: ICMP 8941

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. zizaniae


ncbi_isolation_source: marine

ncbi_organism_name: Balneolaceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces tricolor

ncbi_submitter: BGI Research


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Spain: Tous; Valencia

ncbi_isolation_source: freshwater reservoir from 13m depth

ncbi_organism_name: Verrucomicrobiia bacterium Tous-C3TDCM

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__unclassified Verrucomicrobiia;s__Verrucomicrobiia bacterium Tous-C3TDCM


ncbi_isolate: AOP31_B2_surf _bin _20

ncbi_organism_name: Vagococcus salmoninarum

ncbi_strain_identifiers: AOP31_B2_surf _bin _20

ncbi_submitter: Genoscope


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Blautia producta

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Nonomuraea sp. JJY05

ncbi_submitter: Korea Institute of Industrial Technology


ncbi_country: Canada: British Columbia

ncbi_isolation_source: dialysate

ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-02147

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-02147


ncbi_organism_name: Xanthomonas sp. CPBF 426

ncbi_submitter: CIBIO-Inbio


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: Deinococcus xinjiangensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Faecalibaculum sp.


ncbi_assembly_name: Rumen uncultured genome RUG11194

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Streptomyces avermitilis


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Catheter

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: nasopharynx


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: Agrilactobacillus fermenti POM1

ncbi_organism_name: Agrilactobacillus fermenti

ncbi_submitter: Srinakharinwirot university


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: metabat2_coassembly_bwa.931 MAG

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.931 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Mycolicibacterium septicum

ncbi_submitter: West China Hospital, Sichuan University


ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: USA: California; Cedars Spring

ncbi_isolation_source: spring water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_assembly_name: freshwater MAG --- YR_bin-1745

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: South Korea

ncbi_isolation_source: Human sputum

ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: Korea University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_assembly_name: freshwater MAG --- E14_bin-2284

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylobacillus sp.


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Thailand

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: USA: Oklahoma

ncbi_isolation_source: Pelvic wound

ncbi_organism_name: Burkholderia oklahomensis C6786

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Staphylococcus aureus 16K

ncbi_submitter: Division of Bacteriology, Department of Infectious Disease Control and International Medicine, Niigata University Graduate School of Medical and Dental Sciences


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Birmingham


ncbi_isolation_source: food

ncbi_organism_name: Aeromonas media

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: swab

ncbi_strain_identifiers: LBMM 6385

ncbi_submitter: University of the Basque Country


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_country: South Africa: North West; Free State; Northern Cape and Gauteng provinces

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas vasicola pv. zeae

ncbi_submitter: North-West University


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Dilute Hydrothermal Plume

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Colon

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_country: USA:New York; EastHarlem

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerobutyricum hallii


ncbi_country: India: Pune

ncbi_isolation_source: Infant fecal sample

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Tata Chemicals Ltd


ncbi_assembly_name: freshwater MAG --- Day2-2_bin-074

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_submitter: Wuhan University


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: anaerobic fermentation tank

ncbi_organism_name: Comamonas sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium


ncbi_isolation_source: UCC isolate

ncbi_organism_name: Acinetobacter sp. FDAARGOS_494

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Virginia

ncbi_isolation_source: soil

ncbi_organism_name: Paraburkholderia bonniea

ncbi_submitter: Colby College


ncbi_country: Sweden: Gothenborg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Vibrio campbellii HY01

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio campbellii;x__Vibrio campbellii HY01


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Actinomycetota bacterium


ncbi_assembly_name: IMG-taxon 2675903034 annotated assembly

ncbi_organism_name: Acinetobacter kyonggiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Nitrobacter sp.

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfosarcina sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Yangzhou University


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_submitter: Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus MRSA252


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 160 (4-5695937)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 160 (4-5695937)


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Metallumcola ferriviriculae

ncbi_submitter: University of Minnesota


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Ruminococcus champanellensis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Crenothrix polyspora

ncbi_submitter: Department of Microbiology and Ecosystem Science, University of Vienna

ncbi_type_material_designation: assembly designated as reftype


ncbi_organism_name: Pedobacter sp. BG31

ncbi_submitter: Institute of Molecular Genetics And Genetic Engineering


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS3

ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Armatimonas sp.

ncbi_submitter: EPFL


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangzhou; Guangdong

ncbi_isolation_source: Soil

ncbi_organism_name: Rhodococcus sp. 2G

ncbi_submitter: Jinan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 2G


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus sp. AZ109

ncbi_submitter: Broad Institute


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolate: AOP33_2_surf _bin _8

ncbi_organism_name: Arthrobacter rhombi

ncbi_strain_identifiers: AOP33_2_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Actinobacteria bacterium UBA6100

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium UBA6100


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Denmark: Jaegersborg Dyrehave

ncbi_isolation_source: grassland soil

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Salmonella sp. NW1109

ncbi_submitter: Sichuan University


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_country: Australia

ncbi_isolation_source: environmental

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Paenibacillus lactis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: China: Shanghai

ncbi_isolation_source: waste landfill

ncbi_organism_name: Sinomonas sp. ASV322

ncbi_submitter: Beijing University of Chemical Technology


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillaceae bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy: Apulia; Bari

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_country: China: Bejing

ncbi_isolation_source: Anus

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: water samples from two horizons (5 m and 20 m) were filtered through the net (size 27-um) and then filtered through nitrocellulose filters with a pore size of 0.22 um

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Paracoccaceae bacterium Fryx2

ncbi_submitter: CosmosID


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Candidatus Faecenecus gallistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__;o__;f__;g__Candidatus Faecenecus;s__Candidatus Faecenecus gallistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Faecenecus;s__Candidatus Faecenecus gallistercoris


ncbi_country: Canada: Quttinirpaaq Lagoon

ncbi_isolation_source: freshwater lake

ncbi_organism_name: filamentous cyanobacterium Phorm 6

ncbi_strain_identifiers: Phorm 6

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__filamentous cyanobacterium Phorm 6


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: NATIONAL UNIVERSITY OF IRELAND, GALWAY


ncbi_submitter: Graduate School of Life Sciences, Tohoku University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Aurantimonadaceae;g__Aureimonas;s__Aureimonas ureilytica;x__Aureimonas ureilytica DSM 18598 = NBRC 106430


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Jiangsu

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Symbiodiniaceae culture

ncbi_organism_name: Roseovarius sp. MMSF_3305

ncbi_submitter: The University of Melbourne


ncbi_country: Australia: Brisbane

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The University of Queensland


ncbi_country: Brazil: Belm de So Francisco; PE

ncbi_isolation_source: bulbs

ncbi_organism_name: Burkholderia semiarida

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_country: Switzerland

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Inselspital


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Burkholderiales bacterium UBA4200

ncbi_submitter: University of Queensland


ncbi_organism_name: Limosilactobacillus reuteri subsp. rodentium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Singapore

ncbi_isolation_source: Swimming Pool Backwash

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: SCELSE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Snodgrassella alvi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Madurai Kamaraj University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Uganda

ncbi_isolation_source: Ventricular cerebrospinal fluid

ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_submitter: Pennsylvania State University College of Medicine


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidocella sp.


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium OM02-26

ncbi_submitter: BGI


ncbi_country: France: Marseille

ncbi_isolation_source: skin

ncbi_organism_name: Streptomyces mexicanus

ncbi_submitter: IHU - Mediterannee Infection


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroides acidifaciens