ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_organism_name: Planomonospora alba

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Methylobacterium oryzae

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Mongolia

ncbi_organism_name: Brucella abortus R42-08

ncbi_submitter: Broad Institute


ncbi_organism_name: Duncaniella freteri


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_isolation_source: Dairy

ncbi_organism_name: Bacillus cereus

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: Australia: WA; Canna

ncbi_organism_name: Mesorhizobium sp. CA6

ncbi_submitter: Curtin University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: EMG


ncbi_country: USA: NY

ncbi_organism_name: Bacillus sp. AFS002410

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS002410


ncbi_country: Romania: Targoviste

ncbi_isolation_source: Enviromental

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Mucilaginibacter ginsenosidivorans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials CNPEM


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Cancer Hospital


ncbi_organism_name: uncultured Kangiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA-ARS-USMARC


ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of South Africa


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Metabacillus litoralis

ncbi_strain_identifiers: MER 46

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ethiopia: Tigray; West Tigray; Shire

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Rugosibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Germany: Lake Stechlin

ncbi_genome_category: derived from single cell

ncbi_isolation_source: 10 single cells amplified by MDA; cell type akinete; from sediment

ncbi_organism_name: Dolichospermum sp. ST_sed3

ncbi_submitter: CSIRO


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium GW2011_GWC2_33_13


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Zhejiang A&F University


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: Nasal

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Malaya


gtdb_type_species_of_genus: t

ncbi_country: USA: Durham; NC

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Arachnia propionica

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas gingeri

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Legionella gratiana


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: WOUND SWAB

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: United Kingdom: Carrickfergus

ncbi_isolation_source: Brine

ncbi_organism_name: Halomonas sp. CSM-2

ncbi_submitter: Queen's University Belfast


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Minnesota


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: NE

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Chulalongkorn University


ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: University of Oxford


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_country: Bahamas: Pigeon Creek; San Salvador

ncbi_isolation_source: gill

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Lucina aurantia)


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli O104:H4 str. 11-4522

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 11-4522


ncbi_assembly_level: Chromosome

ncbi_organism_name: Helicobacter canadensis MIT 98-5491

ncbi_submitter: Helicobacter canadensis MIT 98-5491 Sequence Consortium


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Iowa

ncbi_isolation_source: pneumonic lung specimen from feedlot steer

ncbi_organism_name: Mannheimia haemolytica D174

ncbi_submitter: National Animal Disease Center


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (MCD) from International Space Station

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Beijing

ncbi_isolation_source: leaf spot

ncbi_organism_name: Pseudomonas quercus

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_isolation_source: Vagina

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Portugal: Odemira

ncbi_organism_name: Corynebacterium silvaticum

ncbi_submitter: UFMG


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: Tracheal lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Leyella stercorea

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Japan: Watarase-yuusuichi; Fujioka; Tochigi

ncbi_organism_name: Dolichospermum heterosporum TAC447

ncbi_submitter: Hokkaido University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA1929


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Litorimonas sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Avibacterium avium

ncbi_strain_identifiers: SCPM-O-B-15614 (Shiryaevo PSK-4)

ncbi_submitter: SRCAMB


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Candidatus Obscuribacteraceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;x__unclassified Candidatus Obscuribacteraceae;s__Candidatus Obscuribacteraceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: biofilm from LB_RO membrane2

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_submitter: Academia Sinica


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Utrecht University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Tepidiformaceae bacterium


ncbi_organism_name: Paenibacillus sp. 2TAB26

ncbi_submitter: CCRP


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Arizona

ncbi_isolation_source: hindgut

ncbi_organism_name: Parasaccharibacter apium

ncbi_submitter: USDA-ARS


ncbi_country: China:Hubei; Huangshi

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_strain_identifiers: GPS6 HBHS 2017-3

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Firmicutes bacterium CAG:176

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:176


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Bose Institute


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: CO

ncbi_isolation_source: milk bovine cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA1974

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Actinomycetaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG10843

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Candidatus Solibacter sp.

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Solibacter;x__unclassified Candidatus Solibacter;s__Candidatus Solibacter sp.


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-4223

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Health Canada


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthomonas hortorum pv. cynarae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Methylobacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: China: Huzhou

ncbi_isolation_source: stool sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou cdc


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea: Jeonbuk province

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Jeonbuk National University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: United Kingdom: England

ncbi_isolation_source: GOS pig 49 cecum

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: The University of Nottingham


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Candidatus Mesolinea sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Mesolinea;x__unclassified Candidatus Mesolinea;s__Candidatus Mesolinea sp.


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Paenibacillus sp. SORGH_AS_0338

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: North Carolina

ncbi_isolation_source: respiratory

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: United Kingdom:England


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H24662

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Denmark: Zealand

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium beringeri

ncbi_submitter: Aarhus University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. NPDC102384

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: sputum

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_strain_identifiers: GBS

ncbi_submitter: California Sate University, San Bernardino


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Thailand: Lamphun; Mueang Lamphun

ncbi_isolation_source: diseased buffalo with haemorrhagic septicaemia

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_strain_identifiers: THF

ncbi_submitter: Murdoch University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_12_FULL_45_19


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acholeplasmataceae bacterium


ncbi_submitter: University of Trento


ncbi_country: China: Qingdao

ncbi_organism_name: Rhodobacteraceae bacterium CCMM004

ncbi_submitter: Marine Carbon Sequestration and Energy Microorganism Group


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium H8

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium H8


ncbi_country: United Kingdom

ncbi_isolation_source: Chondroid

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_isolation_source: skin swab

ncbi_organism_name: Janibacter indicus

ncbi_submitter: Changwon National University


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_isolation_source: Faeces


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Haliscomenobacter hydrossis DSM 1100

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Segatella copri

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;s__Candidatus Kerfeldbacteria bacterium CG_4_10_14_0_8_um_filter_42_10


ncbi_country: China: Ningxia

ncbi_isolation_source: rhizosphere soil of Cucumber

ncbi_organism_name: Paenibacillus apii

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: France

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Bacillus sp. 22293

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 22293


ncbi_isolate: VTEC

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Leyella stercorea

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: cold seep

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: SRCAMB


ncbi_organism_name: Myxococcales bacterium


ncbi_submitter: Wits University


ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: VIVEKANANDA COLLEGE, AGATEESWARAM


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Tamil Nadu Agricultural University


ncbi_isolation_source: bioreactor

ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Queensland


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 11

ncbi_isolation_source: acid mine drainage site biofilm from emergence; outflow channel; and Rose Pool

ncbi_organism_name: Bacteroidia bacterium

ncbi_strain_identifiers: MAG 11

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: urine

ncbi_strain_identifiers: MGH 13

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii;x__Enterobacter hormaechei subsp. hoffmannii MGH 13


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Denmark: Odense

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Region Zealand


ncbi_country: China: Guangdong

ncbi_isolation_source: kefir grains

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- Day2-1_bin-019

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_country: USA

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Dysgonomonas sp.


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea: Namsan Mt.

ncbi_organism_name: Paenibacillus agilis

ncbi_submitter: dongguk university


ncbi_organism_name: Photorhabdus luminescens subsp. luminescens

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Bar Harbor; ME MDIBL

ncbi_isolation_source: algae in harbor

ncbi_organism_name: Cellulophaga baltica

ncbi_submitter: University of New Hampshire


ncbi_country: South Korea: Gomso

ncbi_isolation_source: gomso solar saltern

ncbi_organism_name: Halomonas aestuarii

ncbi_submitter: Jeju National University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: clinically healthy pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: INRAe


ncbi_country: Nigeria: Kano

ncbi_isolation_source: School toilet

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Subdoligranulum sp. TF05-17AC

ncbi_submitter: BGI


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina abyssalis

ncbi_submitter: University of Queensland


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Anhui

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universidad Autonoma de Sinaloa


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Spain: Santiago de Compostela

ncbi_organism_name: Streptococcus downii

ncbi_strain_identifiers: CECT 9732

ncbi_submitter: SERGAS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_country: Egypt

ncbi_isolation_source: Ground beef

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC006678

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium UBA2848


ncbi_isolation_source: culture

ncbi_submitter: University of California at Davis


ncbi_country: Poland: Bydgoszcz

ncbi_isolation_source: hematoma

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: termite gut

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Modern Agricultural College


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri Shi06GS02

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yunnan

ncbi_isolation_source: kefir

ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_submitter: State Key Laboratory of Dairy Biotechnology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Yonathbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;x__unclassified Candidatus Yonathbacteria;s__Candidatus Yonathbacteria bacterium


ncbi_country: Mexico: Mexico city

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Bartonella apis

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: GNS Science


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: Canada

ncbi_isolation_source: Duck hatchery premise. Environmental sponge from top of hatcher C1 in hatcher room C

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Candidatus Desulforudis audaxviator

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Candidatus Desulforudaceae;g__Candidatus Desulforudis;s__Candidatus Desulforudis audaxviator


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: BGI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. G-M28

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: University of Leicester


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudoxanthomonas suwonensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Czech Republic: Chronicare Mund Brno

ncbi_isolation_source: urine

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Processed meat wors

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Johannesburg


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Metamycoplasma salivarium

ncbi_submitter: Iwate Medical University


ncbi_organism_name: Pseudoalteromonas sp. B62

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kemin Industries (Asia) Pte Ltd.


ncbi_organism_name: Salmonella sp. LSP 576/01

ncbi_submitter: University of Oviedo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Escherichia coli

ncbi_submitter: Normandie Univ


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_organism_name: Zobellia russellii

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Alexandria University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA754

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__unclassified Bacillales;s__Bacillales bacterium UBA754


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: California; Eel River; Dobbyn Creek near Alderpoint

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Fort McMurray; Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Bacteroidales bacterium UBA5204

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA5204


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Solibacillus isronensis

ncbi_strain_identifiers: MER TA 154

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus stratosphericus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong Province

ncbi_isolation_source: stem

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Guangdong Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wroclaw


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: California; Knight s Landing

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human listeriosis

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: 18-04415;clinical isolate of L. monocytogenes

ncbi_submitter: ROBERT KOCH INSTITUT


ncbi_country: China:Hubei; Xiaogan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: caecum

ncbi_organism_name: Ligilactobacillus sp. 110_WCHN

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 737393

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Allomuricauda sp. AC10

ncbi_submitter: Shantou University


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020196

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: ND

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: Seawater from oxygen minimum zone

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0546


ncbi_submitter: The University of Melbourne


ncbi_organism_name: Macrococcus psychrotolerans

ncbi_submitter: University of Bern


ncbi_organism_name: Petrotogaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Taibai Mountain

ncbi_isolation_source: moss soil

ncbi_organism_name: Streptomyces asoensis

ncbi_submitter: Northwest A&F University


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: Arthrocnemum machrostachyum leaves

ncbi_organism_name: Vibrio palustris

ncbi_strain_identifiers: CECT 9027T

ncbi_submitter: UVEG


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Italy

ncbi_isolation_source: vegetables

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Nosocomial environment

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 113 (4-7535473)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 113 (4-7535473)


ncbi_organism_name: Candidatus Fervidibacter sacchari

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Fervidibacterota;c__;o__;f__;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter sacchari

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;s__Candidatus Fervidibacter sacchari


ncbi_country: Australia: Warrandyte; Victoria

ncbi_isolation_source: scats

ncbi_organism_name: Siccibacter turicensis

ncbi_submitter: RMIT University


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: food processing facility

ncbi_organism_name: Pseudomonas sp. PS01296

ncbi_submitter: Penn State University


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: metagenome

ncbi_organism_name: Anaeromassilibacillus sp. An250

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Huzhou cdc


ncbi_isolation_source: river water

ncbi_organism_name: Citrobacter sp. R1

ncbi_submitter: Shandong University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_isolation_source: skin; tongue

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Thailand: Udon Thani

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: PA

ncbi_isolation_source: small intestine white-tailed deer

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Kurume University School of Medicine


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Minneapolis; MN

ncbi_isolation_source: urine

ncbi_submitter: Santa Clara University


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 86

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: fluid

ncbi_organism_name: Staphylococcus aureus M0378

ncbi_submitter: Broad Institute


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Banpo; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: South china normal university


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Acetobacter sp. DmW_125126

ncbi_submitter: Brigham Young University


ncbi_organism_name: Motiliproteus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Colorado State University


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Proteus sp. G4468

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4468


ncbi_country: China: Dongying

ncbi_isolation_source: Glycine soja rhizoplane saline soil

ncbi_organism_name: Sinorhizobium fredii

ncbi_submitter: Tobacco Research Institute of Chinese Academy of Agricultural Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_isolation_source: cervical

ncbi_organism_name: Streptococcus sp. HMSC074F10

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Cystobacter fuscus

ncbi_strain_identifiers: Cbf 8

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Rhizobium beringeri

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kampala International University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Parabacteroides distasonis


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Bacteroides sp.


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Brazil: Blumenau

ncbi_isolate: bacterium

ncbi_isolation_source: feces

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: bacterium

ncbi_submitter: LNCC


ncbi_country: Canada: Lacombe

ncbi_organism_name: Aerococcus suis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lachnospiraceae bacterium PFB1-17

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli KTE168

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_assembly_name: Photobacterium marinum AK15

ncbi_country: India:Palk Bay

ncbi_organism_name: Photobacterium marinum

ncbi_submitter: Institute of Microbial Technology


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: SponGES


ncbi_country: Italy: Turi

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Alberta


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Sulfurirhabdus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Rhizobiales bacterium 63-22

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: CNGB


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: mesophilic digester

ncbi_submitter: University of Manitoba

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Thermoclostridium;s__Thermoclostridium stercorarium;sb__Thermoclostridium stercorarium subsp. thermolacticum;x__Thermoclostridium stercorarium subsp. thermolacticum DSM 2910


ncbi_country: Viet Nam

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Marinicella pacifica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Tianjin

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Thiohalophilus thiocyanatoxydans


ncbi_organism_name: Kocuria rosea

ncbi_submitter: marine college, shandong university


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Ancillula glyptotermitis

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seattle Children's Hospital


ncbi_country: Mexico

ncbi_organism_name: Gallibacterium anatis 4895

ncbi_submitter: University of Copenhagen


ncbi_country: France

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2827

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2827


ncbi_country: United Kingdom:Manchester

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Vibrio nigripulchritudo SFn27

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: intestinal content

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IFSC USP


ncbi_isolation_source: clinical material

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: South Africa: Mpumalanga

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 90

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: New Zealand: Palmerston North

ncbi_isolation_source: fresh; whole chicken carcass purchased from a supermarket

ncbi_submitter: Institute of Veterinary, Animal and Biomedical Sciences,  Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni P110B


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. N-M52

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Chlamydia trachomatis L2b/Ams2

ncbi_submitter: Sanger Institute


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Streptococcus agalactiae GBS10

ncbi_submitter: The Genome Institute


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Kitasatospora herbaricolor

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Bacteroides sp. 3_1_40A

ncbi_submitter: Broad Institute


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Norway: Bergen

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus argenteus

ncbi_strain_identifiers: ACVAA

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: JCVI


ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: India: Kolkata

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Anaerococcus vaginalis


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bartonella sp. AA89HNZF

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. NPDC058479

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: OG1RF arcD::Tn

ncbi_submitter: University of Buffalo


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolate: AOP25_C1_surf _bin _15

ncbi_organism_name: Staphylococcus sp.

ncbi_strain_identifiers: AOP25_C1_surf _bin _15

ncbi_submitter: Genoscope


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-340

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Kashgar

ncbi_isolation_source: Saline-alkali environment

ncbi_organism_name: Bacillus haynesii

ncbi_submitter: Xinjiang University


ncbi_organism_name: Aquimarina hainanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: uncultured Campylobacteraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Rubrivivax sp. SCN 70-15

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F16108

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG14303

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: Colombia: Antioquia

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fusobacterium pseudoperiodonticum

ncbi_submitter: EMG


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus M24418


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Department of Veterinary Microbiology Kamdhenu University Navsari


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Ruthenibacterium sp.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Mesorhizobium sp. M1272

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Thermomicrobiales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: Stool

ncbi_submitter: CDC


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter nosocomialis


ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 1007-1-F #3

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 1007-1-F #3


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: seafood

ncbi_organism_name: Vibrio parahaemolyticus S143

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S143


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces rapamycinicus NRRL 5491

ncbi_strain_identifiers: NRRL 5491

ncbi_submitter: University of Kaiserslautern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces violaceusniger group;s__Streptomyces rapamycinicus;x__Streptomyces rapamycinicus NRRL 5491


ncbi_organism_name: Rhodococcus sp. UYP9

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. UYP9


ncbi_country: Senegal

ncbi_isolation_source: stool

ncbi_organism_name: Brucella intermedia

ncbi_submitter: institut hospitalo-universitaire IHU


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Microbacterium ulmi

ncbi_strain_identifiers: CECT 5976


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_strain_identifiers: JPIBVI

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured Thalassobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Kineococcus radiotolerans


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre pasteur du Cameroun


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand

ncbi_organism_name: Leptospira weilii str. 2006001853

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom: London

ncbi_isolation_source: Screening

ncbi_submitter: UK Health Security Agency


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_isolation_source: Koumiss

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Rectal and wound swab

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Public Health Ontario


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Nanchang

ncbi_isolation_source: visceral

ncbi_submitter: Jiangxi academy of agricultural sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWA1_41_7


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces showdoensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Longimicrobiales bacterium


ncbi_isolate: SPRUCE 317

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 317

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_isolate: AOP38_B2_surf _bin _21

ncbi_organism_name: Corynebacterium casei

ncbi_strain_identifiers: AOP38_B2_surf _bin _21

ncbi_submitter: Genoscope


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Candidatus Ruthturnera sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__environmental samples;s__uncultured Candidatus Ruthturnera sp.


ncbi_organism_name: Paraburkholderia silvatlantica


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-4056

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Florida


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolate: Miscellaneous

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Catenisphaera adipataccumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0331

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Indonesia: Sumatra

ncbi_isolation_source: Soil

ncbi_organism_name: Acinetobacter amyesii

ncbi_submitter: National Institute of Public Health


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG831

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: MI

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia sp. MSK.21.1

ncbi_submitter: University of Chicago


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Anaerosporomusa subterranea

ncbi_submitter: Colorado State University


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill