ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium CG_4_10_14_0_2_um_filter_41_8


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UNIVERSITY MEDICAL CENTER UTRECHT


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_assembly_level: Scaffold

ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA

ncbi_organism_name: Pedobacter sp. KBW01

ncbi_submitter: Tufts University


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Paenibacillus dendritiformis

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Vineibacter terrae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Rumen uncultured genome RUG11466

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Streptomyces bohaiensis

ncbi_submitter: Applied Microbiology, Department of Marine Biosciences, Tokyo University of Marine Science and Technology

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Kocuria turfanensis

ncbi_refseq_category: reference genome

ncbi_submitter: Hubei University of Technology


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_country: China: GuangZhou

ncbi_isolation_source: purulent wounds

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: South China Agricultural University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Germany

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: UZ Gent


ncbi_assembly_name: IMG-taxon 2615840606 annotated assembly

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Nostocaceae cyanobacterium P_APHA

ncbi_submitter: University of Utah


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11597

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA:Wyoming; Yellowstone National Park; Bouder Geyser hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Thermomicrobium sp.

ncbi_submitter: University of Minnesota


ncbi_submitter: University Hospital Muenster


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: United Kingdom: Crawley

ncbi_isolation_source: pus

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Neisseria flavescens


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: Malaysia

ncbi_isolation_source: Compost

ncbi_organism_name: Saccharococcus caldoxylosilyticus

ncbi_submitter: University Malaysia Sabah


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-347-K20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus sp. BLCC1-0148

ncbi_submitter: Henan University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. BLCC1-0148


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Scalp Level; Pennsylvania

ncbi_isolation_source: acid mine drainage in low-pH Fe(II)-oxidizing bioreactor

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Packed salmon

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 78

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2128

ncbi_submitter: Broad Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Colwellbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Colwelliibacteriota;x__unclassified Candidatus Colwellbacteria;s__Candidatus Colwellbacteria bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Pontibacter sp. 13R65

ncbi_submitter: Xinjiang Academy of Agricultural Sciences


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_submitter: University of Pavia


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tongji University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Metabacillus litoralis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Cyamopsis

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: University of Rome "La Sapienza"


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA2520

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA2520


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Lethbridge Research Centre


ncbi_country: China: Yutangba; Enshi

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. ES3-33

ncbi_submitter: university of copenhagen


ncbi_country: USA: PA

ncbi_isolation_source: spleen

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Washington state; Ritzville

ncbi_isolation_source: wheat rhizosphere

ncbi_organism_name: Pseudomonas sp. R11-23-07

ncbi_submitter: Universite de Moncton


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Government of Canada


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-494

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_organism_name: Williamsia deligens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Sulfurifustaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Czech Republic: Jablunkov

ncbi_isolation_source: drinking water

ncbi_organism_name: Enterococcus rotai

ncbi_submitter: Gateway Technical College


ncbi_isolation_source: Leafy green

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Salmonella Syst-OMICS


ncbi_organism_name: Streptomyces sp. NPDC017861

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Zhejiang institute of freshwater fisheries


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: SC


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: India: Mumbai

ncbi_organism_name: Yersinia pestis

ncbi_strain_identifiers: 125 B plague Bombay

ncbi_submitter: cBio Corp


ncbi_organism_name: Citrobacter sp. R-1.5.2

ncbi_submitter: University of Oldenburg


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium

ncbi_isolation_source: faces

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: Antarctica

ncbi_organism_name: Flavobacterium sp. 14A

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus sp. DIV0170

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LSHTM


ncbi_organism_name: Rodentibacter caecimuris

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_country: Germany: Berlin

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Fibrobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eisenbergiella sp.


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Marivivens donghaensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_organism_name: Streptomyces sp. PDY-4

ncbi_submitter: Korea University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MAMI


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Cereibacter changlensis

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_isolate: Portugal

ncbi_organism_name: symbiont of Argiope bruennichi

ncbi_strain_identifiers: Portugal

ncbi_submitter: Ernst-Moritz-Arndt University of Greifswald


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Candidatus Pelagibacter sp. Uisw_101

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. Uisw_101


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Planctomycetes bacterium UBA1146

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium UBA1146


ncbi_isolation_source: sediment

ncbi_organism_name: Bacillales bacterium UBA3566

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Rickettsiaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Rhodoferax sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Tehcnology, Sydney


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter atlanticus subsp. cyclopteri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Shenzhen

ncbi_organism_name: Olsenella sp. AF16-14LB

ncbi_submitter: BGI


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: rhizosphere of mature greenhouse bell pepper (Capsicum annuum L) plants grown in soilless media

ncbi_organism_name: Flavobacterium sp. F52

ncbi_submitter: ARO, Volcani Agriculture Research Center


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_country: France

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Rhorus exstirpatorius


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Kluyvera sp. EC_51

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC007251

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome


ncbi_country: India: Lampokhari Lake; Aritar; Sikkim

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: AR 06_Mez(R)

ncbi_submitter: The University of Burdwan


ncbi_country: Russia

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute for Epidemiology


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: China: Xi an

ncbi_isolation_source: urban river water

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: majorbio


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Chicago


ncbi_organism_name: Citrobacter sp. RHBSTW-00509

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_strain_identifiers: Malikx

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Yersinia kristensenii

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacillus cereus HuA2-9

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus HuA2-9


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease Swab

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M12714


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Health Canada


ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: South Korea: Jinju

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: China: Sichuan

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile CD9

ncbi_submitter: Institute for Genome Sciences


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Candidatus Merdibacter merdigallinarum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Toho University


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human skin

ncbi_organism_name: Corynebacterium massiliense

ncbi_submitter: NIH/NHGRI


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M015S1

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Borreliella japonica


ncbi_country: Serbia: Kovilj

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Flavobacteriales bacterium UBA6057

ncbi_submitter: University of Queensland


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: USA

ncbi_organism_name: Haemophilus parainfluenzae ATCC 33392

ncbi_submitter: Zymo Research Corporation


ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus WMCA6015

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces sp. NPDC047130

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: stool sample from female patient with EHEC symptoms (bloody diarrhea)

ncbi_organism_name: Escherichia coli O104:H4 str. GOS1

ncbi_submitter: Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. GOS1


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mannheimia haemolytica

ncbi_strain_identifiers: swab isolate 1;2930MH

ncbi_submitter: University of California, Davis


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptococcus agalactiae STIR-CD-21

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Pakistan: Thal Desert

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Aarhus University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Acidithiobacillus thiooxidans ATCC 19377

ncbi_submitter: Universite de Montreal


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: Australia: WA; Canna

ncbi_organism_name: Mesorhizobium sp. CA15

ncbi_submitter: Curtin University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: uncultured Sphingopyxis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Succiniclasticum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Methylotenera sp.


ncbi_assembly_name: PAIRED

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MASINDE MULIRO UNIVERSITY OF SCIENCE AND TECHNOLOGY


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Dekas Lab, Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: uncultured Candidatus Entotheonella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;x__environmental samples;s__uncultured Candidatus Entotheonella sp.


ncbi_organism_name: Acinetobacter bohemicus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillus cereus group sp. BceL101

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL101


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4524

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC057340

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 103

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 335

ncbi_submitter: University of Calgary


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: Sweden: Oerebro

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus saccharolyticus

ncbi_submitter: Aarhus University


ncbi_country: Russia: Altai krai

ncbi_isolation_source: French frie

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG19

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPMP 768

ncbi_submitter: University of Pretoria


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_country: China: Shandong

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_country: Peru: Tingua; Ancash

ncbi_isolation_source: clinical specimen; blood

ncbi_organism_name: Bartonella bacilliformis VAB9028

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: New York

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 5

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Glasgow


ncbi_organism_name: Gemella haemolysans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Argentina: northwestern

ncbi_isolation_source: silage

ncbi_organism_name: Loigolactobacillus coryniformis subsp. coryniformis

ncbi_submitter: Centro de Referencia para Lactobacilos (CERELA-CONICET)


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Germany

ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: University of Toronto Mississauga


ncbi_assembly_name: Rumen uncultured genome RUG14152

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: PA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Blautia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA

ncbi_isolation_source: swine facility

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 919

ncbi_submitter: USDA-ARS


ncbi_organism_name: Bacillus cereus

ncbi_submitter: United Arab Emirates University


ncbi_country: USA: Pittsburgh; PA

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_assembly_name: Rumen uncultured genome RUG11610

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine water body

ncbi_organism_name: Pelagerythrobacter aerophilus

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aphanothece sp.

ncbi_submitter: Stockholm University


ncbi_country: Morocco: Aoudal

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium cytisi

ncbi_submitter: LMU Munich


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay warer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Norway

ncbi_isolation_source: Snout ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: jiangnan


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM260Bi

ncbi_submitter: Washington University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolate: Fecal samples

ncbi_isolation_source: LBC

ncbi_strain_identifiers: Fecal samples


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf094

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF16-49

ncbi_submitter: BGI


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: alginate 40-100 m particle (artificial) late colonization

ncbi_organism_name: Psychrosphaera sp. B3R10

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Hungatella hathewayi

ncbi_submitter: EMG


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_isolation_source: fecal swab

ncbi_organism_name: Sphingobacterium hotanense

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Candidatus Limiplasma pullistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma pullistercoris


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: Mojave desert

ncbi_organism_name: Mycoplasma testudineum

ncbi_submitter: University of Nevada, Reno


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Sporocytophaga sp.

ncbi_submitter: UNESP-FCAV


ncbi_assembly_name: Rumen uncultured genome RUG14919

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonas amygdali pv. lachrymans

ncbi_submitter: KRIBB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. lachrymans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Marinobacter sp. UBA3182

ncbi_submitter: University of Queensland


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 12-15 cm

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycoplasma sp. Z707

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Paraburkholderia dipogonis

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Paraburkholderia sp. MM5482-R2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: SPRUCE 360

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 360

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: BGI-Shenzhen


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_submitter: Monash University


ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Meningitis; Pneumonia

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: East China Normal University


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: AAFC


ncbi_isolation_source: Faeces


ncbi_country: Mexico: San Luis Potosi

ncbi_organism_name: Microbacterium thalli

ncbi_submitter: Escuela Nacional de Ciencias Biologicas-IPN


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Unknown

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: UZ Gent


ncbi_country: United Kingdom: Leicester

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Leicester


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Schekmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Schekmaniibacteriota;x__unclassified Candidatus Schekmanbacteria;s__Candidatus Schekmanbacteria bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: China: Guangzhou

ncbi_isolation_source: litchi pericarp

ncbi_organism_name: Exiguobacterium acetylicum

ncbi_submitter: Institute of Fruit Tree Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium acetylicum


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Alistipes communis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-167

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: RU1 BHI10

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: University of Technology Sydney


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia: Elista

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russia Research Anti-Plague Institute "Microbe"


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: University Medical Center Groningen


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: USA

ncbi_isolation_source: Tissue isolate

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_organism_name: Sphingobium xenophagum

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Barnesiella sp. WM24

ncbi_submitter: King's College London


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S30

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Egypt

ncbi_isolation_source: Desert Soil; Sinai

ncbi_organism_name: Streptomyces sp. Wb2n-11

ncbi_submitter: TUGRAZ


ncbi_isolation_source: child s throat

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_isolation_source: Japanese tripe stew

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: NIHS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas macacae

ncbi_submitter: UC Davis


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Clostridium perfringens


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 416


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Lancefieldella rimae

ncbi_submitter: EMG


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Eubacteriales bacterium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: SCOPE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Colwellia polaris

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__environmental samples;s__uncultured candidatus Brocadiaceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Hickory Corners; MI

ncbi_organism_name: Burkholderia sp. KBS0801

ncbi_submitter: Indiana University


ncbi_organism_name: Candidatus Eremiobacteraceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Candidatus Eremiobacterales;f__Candidatus Eremiobacteraceae;x__unclassified Candidatus Eremiobacteraceae;s__Candidatus Eremiobacteraceae bacterium


ncbi_country: Italy

ncbi_isolation_source: fresh parmesan cheese

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Parma


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_country: USA: PA

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: China: Jinze hot Spring; Tengchong; Baoshan; Yunnan

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Kryptobacter tengchongensis

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Kryptobacter;s__Candidatus Kryptobacter tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Kryptobacter;s__Candidatus Kryptobacter tengchongensis


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_organism_name: Cyanobacteria bacterium UBA11372

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA11372


ncbi_country: China: Guangzhou

ncbi_organism_name: Salmonella sp. L-S2638

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-470-G21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_country: Denmark: Coppenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella henselae

ncbi_submitter: Anses UMR BIPAR


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-210-07_S3_C2

ncbi_submitter: IGS


ncbi_submitter: Center for Microbial Communities


ncbi_country: South Korea

ncbi_isolation_source: slaughterhouse carcass

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Michigan


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Spain

ncbi_isolation_source: fecal sample from zoo

ncbi_organism_name: Bifidobacterium miconisargentati

ncbi_submitter: University of Parma


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Anaerolineales bacterium UBA3001

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_submitter: Washington University in St. Louis


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3292-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Svalbard

ncbi_isolation_source: fjord sediment

ncbi_organism_name: Vreelandella neptunia

ncbi_submitter: Bacterial diversity and its interaction with metals in glacio-marine environment of Arctic


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Japan

ncbi_isolation_source: Sputum

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Cupriavidus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: United Kingdom: Salisbury

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: cervix

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter sp. WCHAc060042

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: France

ncbi_isolation_source: throat

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Blautia sp. HCP3S3_G8

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: surface swab

ncbi_organism_name: Pantoea brenneri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio oreintalis group;s__Vibrio orientalis;x__Vibrio orientalis CIP 102891 = ATCC 33934


ncbi_organism_name: Escherichia coli O104:H4 str. Ec12-0465

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. Ec12-0465


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Respiratory

ncbi_organism_name: Lactobacillus sp. HMSC25A02

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Mobilisporobacter sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_strain_identifiers: KC

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Fimbriimonadaceae bacterium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Candidatus Spongiisocius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Candidatus Spongiisociales;f__Candidatus Spongiisociaceae;g__Candidatus Spongiisocius;x__unclassified Candidatus Spongiisocius;s__Candidatus Spongiisocius sp.


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Aminobacter sp. Y103A

ncbi_submitter: Tohoku University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacterium plexicaudatum

ncbi_submitter: EMG


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Beijing

ncbi_isolation_source: rhizosphere of maize

ncbi_organism_name: Mesorhizobium sp. YM1C-6-2

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_isolation_source: Albacore tuna-anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Sulfurospirillum cavolei


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_organism_name: uncultured Fimbriimonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: TIAC 2689

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Rhodobacter sp.


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_country: Brazil: Braganca


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Pricia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: China: shanghai

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. LJBV19

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LJBV19


ncbi_country: China

ncbi_isolation_source: sediment sample from the Liaodong Bay of the Bohai Sea

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Spain

ncbi_isolation_source: drinking water from drinking water treatment plant

ncbi_organism_name: Flavobacterium sp. CECT 9288

ncbi_submitter: University of Valencia, Spain

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;x__unclassified Flavobacterium;s__Flavobacterium sp. CECT 9288


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Croatia: Pula

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Pigeon pea little leaf phytoplasma

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__unclassified Candidatus Phytoplasma;s__Pigeon pea little leaf phytoplasma


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bacteraemia patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Hungary

ncbi_isolation_source: Plant material

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Romania

ncbi_organism_name: Mycobacterium tuberculosis 2995AB

ncbi_submitter: Broad Institute


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Kitasatospora sp. NPDC093679

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_organism_name: Actinokineospora inagensis DSM 44258

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhisuis


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: MGH 27


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_submitter: University of Oxford


ncbi_organism_name: Holdemanella biformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Universidad Autonoma de Yucatan


ncbi_organism_name: Picosynechococcus sp. PCC 7002

ncbi_submitter: Nanjing Agriculture University


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Tartu


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: ballast tank

ncbi_organism_name: Legionellaceae bacterium

ncbi_submitter: Shandong university


ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Tsinghua University


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides uniformis


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Lachnospiraceae bacterium GAM79

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: YangZhou university


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: food production metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Kolkata

ncbi_isolation_source: blood sample from septicemic neonates

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_country: Brazil

ncbi_isolation_source: Frozen Chicken

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: BGI Research


ncbi_country: Italy

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Shigella flexneri 7b

ncbi_submitter: CDC


ncbi_submitter: Zoonosis Science Center, Uppsala University


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Staphylococcus aureus F29214

ncbi_submitter: Broad Institute


ncbi_organism_name: Kocuria marina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Magnetococcus marinus MC-1

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Belgorod

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SRCAMB


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Argentina: Victoria

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (5uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: China: LiaoHe

ncbi_isolation_source: oil-soil

ncbi_organism_name: Siccirubricoccus phaeus

ncbi_submitter: china agricultural university


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine