ncbi_country: USA: Unknown

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-2629

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_assembly_level: Scaffold

ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_level: Complete Genome

ncbi_country: Canada: Lacombe; Alberta

ncbi_isolation_source: feeder bull pericardium

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_refseq_category: reference genome

ncbi_submitter: US DOE Joint Genome Institute (JGI), The Lactic Acid Bacteria Genome Consortium and Fidelity Systems Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus gasseri;x__Lactobacillus gasseri ATCC 33323 = JCM 1131

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: mssing

ncbi_organism_name: Myxococcus xanthus DZ2

ncbi_submitter: CNRS


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Arizona

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers of Disease Control


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ecuador

ncbi_isolation_source: pulmonary

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad San Francisco de Quito


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: The strain was isolated from blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_organism_name: Flavobacterium magnesitis

ncbi_submitter: Biorecover


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea:Incheon

ncbi_isolation_source: kimchi (Korean traditional fermented food)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Incheon National University


ncbi_country: China: Zhejiang

ncbi_isolation_source: Casuarina equisetifolia rhizosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Zhejiang Agriculture and Forestry University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprophilus


ncbi_organism_name: Breznakiellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: India: Ballur village; Anekal taluk; Bengaluru Rural district; Karnataka

ncbi_isolation_source: Milk

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maine

ncbi_isolation_source: hospital patient

ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: BW

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_organism_name: Limnospira sp. PMC 289.06

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Shewanella oncorhynchi

ncbi_submitter: Nofima


ncbi_organism_name: Fulvivirga sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Halarcobacter ebronensis

ncbi_submitter: Lund University


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_genome_category: derived from single cell

ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;x__unclassified Rickettsiales;s__Rickettsiales endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Veillonella atypica

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin3

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: HIE bin3

ncbi_submitter: Monash University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_submitter: University of Oxford


ncbi_submitter: AstraZeneca


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6135

ncbi_submitter: Chinese University of Hong Kong


ncbi_assembly_name: IMG-taxon 2708742470 annotated assembly

ncbi_organism_name: Agreia sp. VKM Ac-1783

ncbi_strain_identifiers: VKM Ac-1783

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;g__Agreia;x__unclassified Agreia;s__Agreia sp. VKM Ac-1783


gtdb_type_species_of_genus: t

ncbi_assembly_level: Chromosome

ncbi_country: Czech Republic: Mirosovice

ncbi_isolation_source: Compost soil

ncbi_organism_name: Solicola gregarius

ncbi_submitter: University of Chemistry and Technology


ncbi_country: Russia: Novosibirsk

ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Institute of Chemical Biology and Fundamental Medicine (ICBFM SB RAS)


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Candidatus Alistipes merdigallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_isolation_source: secretions

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Poultry feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Lexington; Kentucky

ncbi_isolation_source: equine placenta

ncbi_organism_name: Amycolatopsis kentuckyensis

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: USA

ncbi_organism_name: Mycoplasmopsis sturni DSM 22021

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: urinary tract

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya


ncbi_country: China: Shandong

ncbi_organism_name: Providencia sp. M-8

ncbi_submitter: China Agricultural University


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Paris Saclay University


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Antarctica: Anvers Island archipelago

ncbi_isolation_source: combination of 4 samples of Synoicum adareanum

ncbi_submitter: Desert Research Institute


ncbi_assembly_name: Rumen uncultured genome RUG14031

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R346;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Dorea longicatena

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H90284

ncbi_submitter: Broad Institute


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_organism_name: Chitinophaga oryziterrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: SC


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolate: laboratory, frozen stock

ncbi_isolation_source: Oklahoma State University

ncbi_organism_name: Mannheimia haemolytica

ncbi_strain_identifiers: frozen stock;laboratory;89010807N

ncbi_submitter: USDA, ARS, USMARC


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: Sediment

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UOL


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_country: Canada

ncbi_organism_name: Francisella tularensis subsp. tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Aurangabad

ncbi_submitter: Christian Medical College


ncbi_submitter: SC


ncbi_country: Viet Nam: Hoa Binh

ncbi_isolation_source: throat swab

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_country: USA: Thompson trail; Siena College campus; Loudonville; New York

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Siena College


ncbi_organism_name: Fimbriiglobus sp.

ncbi_submitter: EPFL


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter sp. 210702-DFI.5.30

ncbi_submitter: University of Chicago


ncbi_country: USA: Umatilla County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1D3

ncbi_submitter: Oregon State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp. AF19-1

ncbi_submitter: BGI


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli O26

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Serratia sp.

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus sp. FSL K6-2861

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-2861


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: USDA-ARS-USMARC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Dourados

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Australia: Tasmania

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Tasmanian Health Service


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV032

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Mexico

ncbi_isolation_source: Lerma River

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: South Korea: Republic of Korea; Jeju; coastal area

ncbi_organism_name: Xanthomarina spongicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque; gingival sulcus

ncbi_organism_name: Paenibacillus glucanolyticus

ncbi_submitter: The Forsyth Institute


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-422-B15

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Leeuwenhoekiella sp. LLG6367-2.1

ncbi_submitter: Station Biologique de Roscoff


ncbi_country: USA: Goucher College; Baltimore; Maryland

ncbi_isolation_source: skin mucus

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Goucher College


ncbi_country: Italy

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 87807-1

ncbi_submitter: Broad Institute


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lactobacillus bombicola

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Brachymonas sp.


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: cold seep

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Duffyella gerundensis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans NLML5

ncbi_submitter: Cornell University


ncbi_organism_name: Waddliaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: freshwater

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Caldovatus sediminis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_country: South Korea: Namyangj

ncbi_isolation_source: Water source with 2-MIB odor

ncbi_organism_name: Pseudanabaena yagii GIHE-NHR1

ncbi_submitter: National Institute of Environmental Research


ncbi_isolation_source: rat gut

ncbi_organism_name: Butyricimonas virosa


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Hydrogenobaculum sp. Y04AAS1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Japan: Kanto

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Candidatus Kapaibacterium thiocyanatum

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__Candidatus Kapaibacterium thiocyanatum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__Candidatus Kapaibacterium thiocyanatum


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA

ncbi_isolation_source: Veterinary

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_assembly_name: IMG-taxon 2698536816 annotated assembly

ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Bradyrhizobium lablabi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transcending colon aspirate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: India: Uttar Pradesh

ncbi_isolation_source: milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Bioprox


ncbi_country: Thailand: Trang

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Clostridium disporicum

ncbi_submitter: SC


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Anaerococcus obesiensis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Italy: Ivrea

ncbi_isolation_source: liquor

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Novartis Vaccines


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter lovaniensis

ncbi_submitter: university of Ghent


ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FDA/CDC


ncbi_organism_name: Bradyrhizobium sp. F1.2.6

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: DOE JGI


ncbi_assembly_name: Rumen uncultured genome RUG10571

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_assembly_name: freshwater MAG --- LJ_bin-4083

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: PA 62

ncbi_organism_name: Pseudomonas aeruginosa str. PA 62

ncbi_strain_identifiers: PA 62

ncbi_submitter: University of Strathclyde

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas aeruginosa;x__Pseudomonas aeruginosa str. PA 62


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Philippines

ncbi_isolation_source: sputum

ncbi_submitter: Philippine Genome Center


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Citrobacter sp. HN-141

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Eisenbergiella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Psychrobacter urativorans

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Blautia faecis

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: India: Assam

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: IMR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Streptomyces althioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rat gut

ncbi_organism_name: Bacteroides sp. UBA7156

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG14095

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: uncultured Hymenobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southampton


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces cyaneofuscatus


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinotignum sp. GS-2025b


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0544

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Pseudomonadaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: USA: Oregon

ncbi_isolation_source: symptomatic onion

ncbi_organism_name: Rahnella aceris

ncbi_submitter: University of the West of England


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: fermented soybean paste

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: National Academy of Agrigultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_submitter: University of California at Davis


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Spain: Saelices el Chico; Salamanca

ncbi_isolation_source: nodules

ncbi_organism_name: Micromonospora noduli

ncbi_strain_identifiers: Lupac 07

ncbi_submitter: Universidad de Salamanca


ncbi_country: Nigeria

ncbi_submitter: Cardiff University


ncbi_isolate: A

ncbi_organism_name: Bacillus anthracis str. A0488

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. A0488


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Canada: Aylmer; Quebec

ncbi_isolation_source: Root nodule from soybean plant inoculated with root zone soil from Amphicarpa bracteata

ncbi_organism_name: Bradyrhizobium symbiodeficiens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_assembly_name: Burkholderia  cenocepacia BCC1295

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Pseudomonas sp. zbq_11

ncbi_submitter: WenZhou Medical University


ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Planctomycetes bacterium UBA7888

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium UBA7888


ncbi_country: Viet Nam: Hanoi

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Streptomyces hirsutus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: University of Minnesota


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O139

ncbi_submitter: Christian Medical College


ncbi_organism_name: Alphaproteobacteria bacterium UBA2984


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M62

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium aquaticum

ncbi_submitter: Sorbonne University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Wits University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Colombia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0141

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: food

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: gut

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W82310

ncbi_submitter: Broad Institute


ncbi_country: USA: Bar Harbor; ME MDIBL

ncbi_organism_name: Pseudoalteromonas shioyasakiensis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: [Clostridium] leptum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: University of Waterloo


ncbi_country: USA: California

ncbi_isolation_source: environmental

ncbi_organism_name: Mesorhizobium sp. C395A

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany:State of Brandenburg;Potsdam-Mittelmark; NIEMGK

ncbi_isolation_source: former landfill site for plastics

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: BAM Bundesanstalt fuer Materialforschung und -pruefung


ncbi_country: USA: Arizona

ncbi_isolation_source: pruno

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: EPFL


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: IMG-taxon 2606217759 annotated assembly

ncbi_organism_name: Sharpea azabuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: SAR92 clade bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_assembly_name: Salmonella enterica CVM N41904-SQ v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: United Arab Emirates: Abu dhabi

ncbi_isolation_source: root sample

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: UAE University


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of pig farm

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The REHAB Consortium


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Microbulbifer sp. CNSA002


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Salmonella sp. SC33

ncbi_submitter: Sichuan University


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 235

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0681

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: India: Pune

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0224R

ncbi_submitter: Broad Institute


ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_country: Brazil: Sao Paulo

ncbi_submitter: Instituto de Quimica


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: University of Oldenburg


ncbi_country: France: Durance river; Tallard

ncbi_isolation_source: river

ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Sorbonne University


ncbi_country: Antarctica

ncbi_organism_name: Psychrobacter sp. TB15

ncbi_submitter: University of Florence


ncbi_organism_name: Rahnella inusitata

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Comamonas faecalis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Nigeria: Sokkoto State;Ilella

ncbi_isolation_source: ant gut

ncbi_organism_name: Olivibacter sp. UJ_SKK_5.1

ncbi_submitter: University of Jos


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. 41573


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Manitoba

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Campylobacter sp. LH-2024

ncbi_submitter: Luxembourg Institute of Science and Technology


ncbi_country: China: Beijing

ncbi_isolation_source: intestine

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sri Lanka: Jaffna

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: USA: NM

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Spain: Ferrol; Galicia

ncbi_isolation_source: Clams

ncbi_organism_name: Arcobacter venerupis

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Litorivicinus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gemmobacter nanjingensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Lederbergia wuyishanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Kocuria rosea

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Anaerovibrio sp.


ncbi_isolation_source: orthoquartzite cave surface

ncbi_organism_name: Pseudomonas fluorescens R124

ncbi_submitter: Northern Kentucky University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Carnobacterium maltaromaticum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10219A

ncbi_submitter: University of Exeter


ncbi_organism_name: Henriciella sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Cochin; Kathrikkadavu; retail fish market

ncbi_isolation_source: clam

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Indian Council of Agricultural Research-Central Institute of Fisheries and Technology


ncbi_country: USA: Tulsa

ncbi_isolation_source: beef liver

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Tulsa


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: California

ncbi_isolation_source: chicken

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: USDA


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_country: Poland: Kopan

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wStur

ncbi_submitter: Martin Luther University Halle-Wittenberg


ncbi_assembly_name: Rumen uncultured genome RUG13934

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Poland: Warsaw

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_assembly_name: IMG-taxon 2596583700 annotated assembly

ncbi_organism_name: Devosia enhydra

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: freshwater SAG --- SB-2103-1078-O3

ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. UBA744

ncbi_submitter: University of Queensland


ncbi_organism_name: Yersinia pestis CMCC84046

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Denmark

ncbi_isolation_source: Spoiled cod fillet

ncbi_organism_name: Photobacterium iliopiscarium

ncbi_strain_identifiers: NCIMB 13478

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Huzhou CDC


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Faecalicoccus sp.

ncbi_submitter: University of California, Davis


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R16

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_organism_name: Pseudomonas sp. RTB3

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Aeromonas sobria

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: Lactobacillaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Chisholmbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Chisholmiibacteriota;x__unclassified Candidatus Chisholmbacteria;s__Candidatus Chisholmbacteria bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: secrete

ncbi_organism_name: Mycobacterium tuberculosis BTB10-005

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: excrement

ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: XSK

ncbi_submitter: The Affiliated People Hospital of Jiangsu University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Cough Swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Human finger

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ATCC 6341

ncbi_submitter: University of Konstanz


ncbi_country: Belgium: Flanders; Tienen

ncbi_isolation_source: sugar thick juice

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Chung-Ang University


ncbi_assembly_name: Rumen uncultured genome RUG10810

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Peribacillus butanolivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Terrisporobacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Fusobacterium mortiferum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces parvus


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_organism_name: Roseateles chitinivorans

ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Novosphingobium sp.


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_assembly_name: Shigella flexneri II:(3)4,7(8) 1.0

ncbi_organism_name: Shigella flexneri II:(3)4,7(8)

ncbi_submitter: Korea National Institute of Health


ncbi_country: South Korea: Gongju

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: oral swab

ncbi_organism_name: Pasteurella sp. WM03

ncbi_submitter: King's College London


ncbi_organism_name: Rhodobium orientis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Pseudomonas sp. fls2-241-R2A-110

ncbi_submitter: University of Chicago


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_isolation_source: Food processing environment

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Lu'an People's Hospital


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Spain

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Turkey: Ankara

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Fimbriimonas ginsengisoli

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: China: Shanxi province; Jingyang

ncbi_isolation_source: rhizosphere soil in an alfalfa field

ncbi_organism_name: Streptomyces alfalfae

ncbi_submitter: college of life science and technology


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Borreliella spielmanii

ncbi_strain_identifiers: Pmew

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: cecum

ncbi_submitter: University of Minnesota


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Peru: Lima

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_isolation_source: rhizosphere soil culture M52

ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_submitter: Tarim University


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_submitter: ANIWHA


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Ardenticatenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Okinawa trough

ncbi_isolation_source: marine sediment

ncbi_organism_name: Idiomarina sp. OT37-5b

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Streptomyces atroolivaceus

ncbi_strain_identifiers: NRRL ISP-5137

ncbi_submitter: University of Illinois


ncbi_organism_name: Pseudoflavonifractor sp. 60

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_strain_identifiers: OSS 914

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: freshwater MAG --- YR4_bin-0286

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.1 filter

ncbi_organism_name: Alphaproteobacteria bacterium GWA1_45_9


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Xiamen University


ncbi_country: Viet Nam: Bac Ninh

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Montreal


ncbi_submitter: Fred Hutchinson Cancer Center


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Indian Institute of Science Education and Research Kolkata


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: gut

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Princeton University


ncbi_organism_name: Candidatus Choladousia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;x__unclassified Candidatus Choladousia;s__Candidatus Choladousia sp.


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV227

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: California

ncbi_isolation_source: respiratory secretions

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CDPH


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2706794920 annotated assembly

ncbi_organism_name: Pseudomonas panipatensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: skin; soft tissue and Pneumonia

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of Washington


ncbi_country: USA: Manhattan; Kansas

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Altaica


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: Yangzhou University


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Alistipes finegoldii


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: Streptomyces roseifaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA2153

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2153


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: [Ruminococcus] lactaris


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus cereus group sp. BceL201

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL201


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Borreliella garinii

ncbi_submitter: LMU Munich


ncbi_country: Germany

ncbi_isolation_source: wound swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: USA: DC

ncbi_isolation_source: Stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Japan: Hokkaido; Sapporo

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces cinnamoneus

ncbi_submitter: John Innes Centre

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: France: Ales

ncbi_isolation_source: urine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Avimonas sp.

ncbi_submitter: Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;x__unclassified Candidatus Avimonas;s__Candidatus Avimonas sp.


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Africa: Port Elizabeth; Algoa Bay; Indian Ocean

ncbi_isolation_source: White Sands Reef

ncbi_organism_name: Priestia megaterium

ncbi_submitter: PharmaSea


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Aggregatibacter sp.


ncbi_isolation_source: marine

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: Russia: Krasnodar Krai; Gladkovsky mud volcano

ncbi_isolation_source: pool on the surface of a mud volcano

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Denmark: Vigerslev

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_country: China: Sichuan

ncbi_organism_name: Klebsiella pneumoniae subsp. ozaenae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Pistachios

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rutgers University


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: beijing


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Paenibacillus larvae

ncbi_strain_identifiers: NRRL NRS-1687

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: SD

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: week R6 calf 134 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Knoellia remsis

ncbi_strain_identifiers: ATCC BAA-1496

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Limosilactobacillus equigenerosi

ncbi_strain_identifiers: NRIC 0697

ncbi_submitter: Kyushu University


ncbi_submitter: University of Saskatchewan


ncbi_country: Chile

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_country: Serbia: Irig

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: University of Exeter


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces bicolor

ncbi_strain_identifiers: NRRL B-3897

ncbi_submitter: University of Illinois


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: Hemoculture

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: BGI


ncbi_country: Netherlands

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: Columbia River estuary; salinty 5

ncbi_organism_name: Rhodobacteraceae bacterium UBA3428

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Chr-Hansen

ncbi_type_material_designation: assembly designated as neotype


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: Rutgers University


ncbi_country: Iceland: Mulakvisl; Kotlujokull Glacier

ncbi_isolation_source: carbon dioxide amended sediment enrichment culture

ncbi_organism_name: Cellulomonas sp.

ncbi_submitter: Montana State University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Oscillospiraceae bacterium TM11-13A

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Phoenix; AZ

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Imperial College London


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Michigan

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: EPFL


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_assembly_name: SalTypSTCR0044 1.0

ncbi_country: Malaysia

ncbi_submitter: University of Malaya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi;x__Salmonella enterica subsp. enterica serovar Typhi str. CR0044


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Rhizobacter sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__environmental samples;s__uncultured Rhizobacter sp.


ncbi_organism_name: Streptomyces sp. NPDC047082

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Alberta

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: University of Pittsburgh


ncbi_country: Thailand

ncbi_isolation_source: other

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: CLC Genomics Workbench 10

ncbi_country: USA: CA

ncbi_isolation_source: Lung R

ncbi_submitter: University of California at Davis


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Technical University of Munich


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas aeruginosa C52

ncbi_submitter: Broad Institute


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: MI

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: CDC


ncbi_organism_name: Cnuibacter sp. UC19_7

ncbi_submitter: The Connecticut Agricultural Experiment Station


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC057565


ncbi_organism_name: Streptomyces sp. NPDC000665


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: Italy

ncbi_isolation_source: Restaurant

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: China: Tsinghua University

ncbi_submitter: Tsinghua University


ncbi_organism_name: Syntrophobacterales bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: China Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Kushneria sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Anaerobic Digestion Sludge

ncbi_organism_name: Firmicutes bacterium UBA1065

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA1065


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Bacillus cereus group sp. BceL289

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL289


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Elusimicrobia bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 589

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chirstian Medical College


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Wilmar International Limited


ncbi_submitter: National Institute of Health


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Variovorax sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Tsinghua University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: Gungdong

ncbi_isolation_source: skin damage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: India

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sterolibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago