ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S32

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudohongiella sp.

ncbi_submitter: Tara Oceans Consortium


gtdb_representative: t

ncbi_isolation_source: cold seep

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_level: Complete Genome

ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_level: Scaffold

ncbi_country: USA: Texas

ncbi_organism_name: Chromobacterium alkanivorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Johnsonella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_submitter: Chr. Hansen A/S


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Endotricha flammealis


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: swab

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Streptomyces sp. NPDC019396

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: NY; Buffalo

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: University of Iowa


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Aliarcobacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Lake Washington

ncbi_organism_name: Janthinobacterium sp. 64

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human skin

ncbi_organism_name: Conchiformibius steedae

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Micromonospora sp. NPDC048999


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Kitasatospora sp. NBC_00458

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China: Liaoning

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Research Institute of childrens infections


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: India: Vellore

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Japan: Tokyo

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Teikyo University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Actinacidiphila glaucinigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Prachinburi

ncbi_organism_name: Hahella sp. HN01

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Micromonospora lupini


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Nigeria: Awka

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter sp. Awk 2

ncbi_strain_identifiers: Awk 2

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus sp. GDQ8D220P

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10189

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Pseudomonas sp. zbq_10

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Rhodomicrobiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: United Kingdom: Salisbury

ncbi_isolation_source: Vagina

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: UK Health Security Agency


ncbi_country: Brazil

ncbi_submitter: UNIFESP


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudozobellia sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada

ncbi_isolation_source: isolated from contaminated platelets

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Health Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolation_source: sub-cultured for isolation from anaerobic microbial enrichment culture derived from a coal seam gas formation water sample

ncbi_organism_name: Solidesulfovibrio magneticus str. Maddingley MBC34

ncbi_strain_identifiers: Maddingley MBC34

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Japan

ncbi_isolation_source: Algal

ncbi_submitter: University of Liverpool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;g__Candidatus Megaera;x__unclassified Candidatus Megaera;s__Candidatus Megaera endosymbiont of Mesostigma viride


ncbi_organism_name: Mogibacterium kristiansenii

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;f__Candidatus Gastranaerophilaceae;x__unclassified Candidatus Gastranaerophilaceae;s__Candidatus Gastranaerophilaceae bacterium


ncbi_organism_name: Rufibacter sediminis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Cheng Kung University Hospital


ncbi_organism_name: Bacillus seohaeanensis

ncbi_strain_identifiers: KCTC 3913


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Vicinamibacteria bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Holophagae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: ARRIAM


ncbi_organism_name: Pantoea sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: IMG-taxon 2675903145 annotated assembly

ncbi_organism_name: Loktanella sp. DSM 29012

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Candidatus Phaeomarinibacter ectocarpi

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: China: Guangxi

ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia sp. N21116

ncbi_submitter: Guangxi Academy of Sciences, China


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-02-H05-BA

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Singapore

ncbi_isolation_source: blood

ncbi_submitter: Singapore General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_organism_name: Croceibacterium atlanticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Fundacao Oswaldo Cruz


ncbi_organism_name: uncultured Dialister sp.


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho university


ncbi_isolation_source: algal culture

ncbi_organism_name: Labrenzia sp. PO1

ncbi_submitter: Shenzhen University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Methylophilaceae bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: Mozambique

ncbi_organism_name: Mycolicibacterium conceptionense

ncbi_submitter: JCVI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Thailand: Samut Sakhon

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China CDC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Argentina: Misiones

ncbi_isolation_source: cellulolytic consortium obtained from decaying native forest soil

ncbi_organism_name: Enterobacter sp. R1(2018)

ncbi_submitter: INTA


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2636416056 annotated assembly

ncbi_organism_name: Polaromonas sp. JS666

ncbi_strain_identifiers: JS666 UNC47MFTsu3.1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Schwartzia sp.

ncbi_submitter: EMG


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CONICET-CEMIC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_country: USA

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA4534

ncbi_submitter: University of Queensland


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_submitter: Dalian Medical University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Kiel University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ABFQX

ncbi_submitter: NHGRI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Vagococcus salmoninarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Sydney


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: China: Huzhou

ncbi_isolation_source: stool sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou cdc


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptomyces sp. NPDC056013

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Kenya

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: Bradyrhizobium sp. USDA 327

ncbi_strain_identifiers: USDA 327

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_assembly_name: freshwater MAG --- MJ110629A_bin-233

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Avigastranaerophilus;s__Candidatus Avigastranaerophilus faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Avigastranaerophilus;s__Candidatus Avigastranaerophilus faecigallinarum


gtdb_type_species_of_genus: t

ncbi_organism_name: Colibacter massiliensis

ncbi_submitter: URMITE


ncbi_country: China: Shanghai

ncbi_isolation_source: aquatic product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: University of Michigan Medical School


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_organism_name: Phycisphaerae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Buttiauxella sp. HR94

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Chakrabartia sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Syntrophobacteria bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Poland: Kalisz

ncbi_isolation_source: Cucumber hairy roots

ncbi_organism_name: Agrobacterium cucumeris

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI)


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Anhui Medical University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Murdoch Children's Research Institute


ncbi_organism_name: Streptomyces tricolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Blautia hansenii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Halothiobacillaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: Pseudomonas corrugata

ncbi_submitter: Agriculture Victoria Research


ncbi_organism_name: Pseudoduganella danionis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Staphylococcus shinii


ncbi_country: USA

ncbi_isolation_source: Clinical

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Netherlands: Oosterscheldt

ncbi_organism_name: Photobacterium sanguinicancri

ncbi_submitter: CIAD, A.C.


ncbi_country: Australia: Newcastle

ncbi_organism_name: Acutalibacter sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M57729

ncbi_submitter: Broad Institute


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Thailand: Samutsakorn Province

ncbi_isolation_source: soil

ncbi_organism_name: Terrilactibacillus laevilacticus

ncbi_submitter: Chulalongkorn University


ncbi_country: China: Liaocheng

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China: Beijing

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_country: Russia: Moscow Region; Durykino ravine

ncbi_isolation_source: Bog soil from slope of Durykino raven

ncbi_organism_name: Candidatus Liberimonas magnetica

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;c__Endomicrobiia;o__Endomicrobiales;x__Endomicrobiales incertae sedis;g__Candidatus Liberimonas;s__Candidatus Liberimonas magnetica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: New York City

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Polynucleobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Anaerobutyricum sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_organism_name: Microcoleus sp. D2B6

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Guangxi

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: BGI


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: rectal swab

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_country: China: Yunnan

ncbi_isolation_source: hot spring sample

ncbi_organism_name: Chelatococcus albus

ncbi_strain_identifiers: SYSU G07232

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Leucothrix mucor

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces tauricus


ncbi_country: India

ncbi_isolation_source: Stool sample from a patient with diarrhea

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Collaborative Research Center of Okayama University for Infectious Diseases in India, Okayama University


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Humicultor tengchongensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Humicultor;s__Candidatus Humicultor tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Humicultor;s__Candidatus Humicultor tengchongensis


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: China:Sichuan; Wolung

ncbi_isolation_source: Soil

ncbi_organism_name: Planotetraspora mira

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Looe Key National Marine Sanctuary; Florida

ncbi_isolation_source: coral mucus

ncbi_organism_name: Jejuia sp. UBA6058

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Streptococcus vestibularis

ncbi_submitter: EMG


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_isolation_source: freshwater

ncbi_organism_name: Anabaena sp. FACHB-709

ncbi_submitter: South China Normal University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Russia: Lake Baikal

ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lomalinda


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Oklahoma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 132

ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Monaro; NSW

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Candidatus Caldatribacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;p__Candidatus Caldatribacteriota;x__unclassified Candidatus Caldatribacteriota;s__Candidatus Caldatribacteriota bacterium


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium longum


ncbi_isolate: Asticcacaulis sp. strain MM231

ncbi_organism_name: Asticcacaulis sp. MM231

ncbi_strain_identifiers: Asticcacaulis sp. strain MM231

ncbi_submitter: center for biotechnology (cebitec), bielefeld university


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Flavobacterium sp. DSR2-3-3

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Agrobacterium deltaense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bifidobacterium longum subsp. suis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Kordiimonas sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Candidatus Pelethousia gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Pelethousia;s__Candidatus Pelethousia gallinarum


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_country: USA: California; Middletown

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Indian Institute of Technology Jodhpur


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_submitter: EMG


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Canada: Alberta

ncbi_organism_name: Fluviicoccus sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Clostridium botulinum BKT015925

ncbi_submitter: National Veterinary Institute (SVA), Sweden


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Pacific Ocean: New Britain Trench

ncbi_isolation_source: a deep-sea sediment sample from the New Britain Trench

ncbi_organism_name: Georhizobium profundi

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: air sac

ncbi_submitter: FAPESP


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Lentzea sp. NPDC003310

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany

ncbi_organism_name: Streptococcus sp. SP4

ncbi_submitter: University Hospital Dresden


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Wenzhou

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Maryland

ncbi_isolation_source: Heads

ncbi_organism_name: Bacillus sp. S74

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S74


ncbi_assembly_name: Norway 13

ncbi_country: Norway: Bergen

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: Norway 13

ncbi_submitter: Uppsala University


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA3319

ncbi_submitter: University of Queensland


ncbi_country: Spain

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Serratia sp. PL4

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. PL4


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Nankai University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Bacillus sp. ST24

ncbi_submitter: Texas A&M

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ST24


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Candidatus Methylomirabilales bacterium

ncbi_submitter: University of Galway

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;x__unclassified Candidatus Methylomirabilales;s__Candidatus Methylomirabilales bacterium


ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: SCPA


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Arcanobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Chile

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: soil alkaline flat

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Mesonia sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-0182

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_assembly_name: freshwater MAG --- Day6-1_bin-560

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Hohhot

ncbi_isolation_source: sour goat milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Nagoya University


ncbi_country: Tanzania: Dar Es Salaam

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Streptomyces sp. NPDC051940

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Ohio

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa Swab

ncbi_organism_name: Corynebacterium sp. p3-SID1194

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bangladesh Agricultural University, Mymensingh


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0811

ncbi_submitter: The University of Queensland


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: Institute of Hydrobiology, Chinese Academy of  Sciences


ncbi_organism_name: Yersinia proxima

ncbi_submitter: Jilin University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Selenomonas noxia

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: groundwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: caecum

ncbi_organism_name: Massilimicrobiota sp. An105

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: horse feces

ncbi_organism_name: Neomoorella thermoacetica

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Microvirga lupini

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Gambia

ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Murdoch Children's Research Institute


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. W8171

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: University of Lausanne


ncbi_assembly_name: Rumen uncultured genome RUG13603

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermoanaerobacteraceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Caldimonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacillus bingmayongensis

ncbi_submitter: Centre of biotechnology of Sfax


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: FL Keys

ncbi_isolation_source: coral tissue

ncbi_organism_name: Silicimonas sp.

ncbi_submitter: NOAA/UM


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Hengyang

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas sp. P1B16

ncbi_submitter: University of Chemistry and Technology, Prague


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Albania: Ksamil

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha weberae

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2585428102 annotated assembly

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas syringae pv. pisi

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. pisi


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_country: Australia: Adelaide

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of South Australia


ncbi_country: USA: Seattle

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_organism_name: uncultured Erythrobacter sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Veillonella atypica

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Moraxella sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: China: Guizhou

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: France: Paris

ncbi_organism_name: Bartonella henselae

ncbi_submitter: Anses UMR BIPAR


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: mangrove

ncbi_organism_name: Streptomyces antioxidans

ncbi_strain_identifiers: MUSC 164

ncbi_submitter: University of Malaya


ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Ponderosibacter;x__unclassified Candidatus Ponderosibacter;s__Candidatus Ponderosibacter sp. Uisw_141_02


ncbi_organism_name: Acidaminococcaceae bacterium


ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Pseudoroseomonas ludipueritiae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Melioribacteraceae bacterium


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: poultry litter

ncbi_submitter: UNIVERSITY OF SEVILLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. Ks16

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: EPFL


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Thalassotalea sp.

ncbi_submitter: marine college, shandong university


ncbi_strain_identifiers: BT-B

ncbi_submitter: Yale University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Johnevansiales;f__Candidatus Johnevansiaceae;g__Candidatus Portiera;s__Candidatus Portiera aleyrodidarum;x__Candidatus Portiera aleyrodidarum BT-B-HRs


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Microbacterium sp. MMO-138

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Enterobacter hormaechei


ncbi_submitter: Columbia University Medical Center


ncbi_assembly_name: freshwater MAG --- MJ110830B_bin-451

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_submitter: Monash University


ncbi_country: Malaysia: Rimba Ilmu

ncbi_isolation_source: soil

ncbi_organism_name: [Enterobacter] lignolyticus

ncbi_submitter: University of Malaya


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA1918

ncbi_submitter: University of Queensland


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: NYC

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Dankook University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Innoviva Specialty Therapeutics


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense genomovar ulcerans

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: Universidade Federal de Pelotas


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Lianyuan

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Application of microbial technology


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium sp. RCAM05973

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: Pseudomonas salmasensis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Portugal

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium UBA6578


ncbi_organism_name: Streptomyces sp. GD-15H

ncbi_submitter: Chungnam National University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Handley Lab, University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Montreal

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Enterobacter quasihormaechei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: France: Villejuif

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus gallinarum


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Beijing

ncbi_submitter: General Hospital


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: Lab culture Euplotes raikovi

ncbi_organism_name: Candidatus Francisella endociliophora

ncbi_submitter: Swedish Defence Research Agency


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Czech Republic: Zofinsky prales National Nature Reserve

ncbi_isolation_source: decomposing wood from intermixed hardwood and conifers

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium glyciniphilum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_country: USA: MD

ncbi_isolation_source: food product

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: OARSA, CFSAN


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-10044

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud del Peru


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Harvard University


ncbi_country: USA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: CDC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Somalia

ncbi_isolation_source: camel milk products

ncbi_organism_name: Weissella confusa

ncbi_submitter: Brigham Young University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: BALB/c mice 13 weeks after infection with Brucella melitensis 16M

ncbi_organism_name: Brucella melitensis 16M13W

ncbi_submitter: Chinese PLA Institute for Disease Control & Prevention, Academy of Military Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella melitensis;x__Brucella melitensis bv. 1;x__Brucella melitensis bv. 1 str. 16M;x__Brucella melitensis 16M13W


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Nagoya University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W28921

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8305

ncbi_submitter: University of Warwick


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Italy: Pisa

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Genoa


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1111203374


ncbi_organism_name: Streptomyces tubercidicus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Coleofasciculus sp. B1-GNL1-01

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Variovorax sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Melbourne


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Gothenburg


ncbi_country: Italy: Brescia

ncbi_isolation_source: Artisanal dry-fermented salami

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: University of Bologna


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_submitter: University College Cork


ncbi_country: USA: California

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Chryseobacterium sp. KCF3-3

ncbi_submitter: Mie University


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 97008

ncbi_submitter: IGS


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Universidad de Leon


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Wyoming


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Caryophanaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bryobacter sp.


ncbi_organism_name: Knoellia tibetensis

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_submitter: University of Surrey


ncbi_organism_name: Psychrobacter faecalis


ncbi_country: USA: Nebraska

ncbi_isolation_source: eye swab

ncbi_organism_name: Moraxella bovoculi

ncbi_submitter: USDA


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW458-11-11-14-TSB1

ncbi_submitter: Arkin Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Vermont

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Pseudoalteromonas sp. KG3

ncbi_submitter: Iowa State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: Canada: North Shore

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_country: Spain: Catalunya

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: University of Waterloo


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: Hot Springs

ncbi_organism_name: Chroococcidiopsis sp. TS-821

ncbi_submitter: The University of Tennessee, Knoxville


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Roseivirga sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Wyoming Soil

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Ohio State university


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Anaerobiospirillum thomasii

ncbi_submitter: SC


ncbi_isolation_source: Whole blood of a duck with colibacillosis

ncbi_strain_identifiers: ExPEC XM

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: Urine Cath

ncbi_submitter: Washington University


ncbi_submitter: University of Verona, Italy


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Zhongshania aliphaticivorans

ncbi_submitter: University of East Anglia


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Fusicatenibacter sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: Fermented goat milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Rhode Island

ncbi_isolate: A

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: D344RRF x C68;A

ncbi_submitter: brown University/Rhode Island Hospital


ncbi_organism_name: Pantoea agglomerans


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Brevundimonas vesicularis


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Southampton


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Amaricoccus sp.

ncbi_submitter: Nanjing University


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: Peru

ncbi_isolation_source: intestine

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: USA: San Francisco

ncbi_submitter: Santa Clara University


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_submitter: University of Zurich


ncbi_country: Mexico

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Blautia sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Sphingomonas sp. CCH19-C6

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: Chigee

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: AJT

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F73229

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Goldiibacteriota;x__unclassified Candidatus Goldiibacteriota;s__Candidatus Goldiibacteriota bacterium HGW-Goldbacteria-1


ncbi_country: Zambia: Lusaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of Maryland College Park


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Vibrio hepatarius

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Thermoanaerobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Cryptobacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Australia: Sunshine Coast hinterland; Queensland

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: ObjetBio Agricultural Co., Inc.


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce

ncbi_organism_name: Morganella morganii

ncbi_submitter: University of Wyoming


ncbi_country: USA: San Diego

ncbi_isolation_source: urine (asymptomatic UTI)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Baylor College of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: BGI-Shenzhen


ncbi_country: China: Huaian

ncbi_isolation_source: pig slaughterhouse

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: Shantou University


ncbi_organism_name: Enterococcus sp. DIV1090

ncbi_submitter: Broad Institute


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-191

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas sp. DC3200b2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudochelatococcus lubricantis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Salmonella sp. SKLX077818

ncbi_submitter: Zhejiang university


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: deep chlorophyll maximum in the Mediterranean off the coast of Alicante; Spain; 75m below sea surface

ncbi_organism_name: marine actinobacterium MedAcidi-G2A

ncbi_submitter: Evolutionary Genomics Group (UMH-EGG)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Oak Ridge; TN

ncbi_organism_name: Pseudomonas sp. FW305-20

ncbi_submitter: Arkin Lab


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa CS-573

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: University of Waterloo


ncbi_country: Russia: Buryats

ncbi_isolation_source: dairy product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Paraguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1429

ncbi_submitter: Broad Institute


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Serratia sp. MMO-24

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. MMO-24


ncbi_country: Austria

ncbi_organism_name: Legionella anisa

ncbi_submitter: Danish Technical University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_country: China: Panyu

ncbi_isolation_source: urine

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Granulicella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 35


ncbi_country: Canada: Quebec; Brome Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Tidjanibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Chicken blood (Gallus gallus)

ncbi_submitter: Mississippi State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_organism_name: Bacillus albus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University