ncbi_organism_name: Streptomyces sp. NPDC007945

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_assembly_level: Contig

ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


gtdb_representative: t

ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_submitter: Kiel University


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1697

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Devosia sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-57A1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: India

ncbi_isolation_source: Marine biofilms

ncbi_organism_name: Pseudoalteromonas tetraodonis

ncbi_submitter: Alagappa University


ncbi_isolation_source: human stool

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: DOE JGI


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_country: USA: OH

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory sample from patients who developed COVID-19 within the first three months of the pandemic in New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Denver

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_organism_name: Salmonella sp. SAL04271

ncbi_submitter: Zhejiang university


ncbi_country: Germany: Herford

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidad de las Americas


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0051

ncbi_submitter: Broad Institute


ncbi_assembly_level: Complete Genome

ncbi_country: Finland

ncbi_isolation_source: Fecal samples from slaughtered sheep

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces avidinii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Polynucleobacter necessarius

ncbi_submitter: UNIVERSITY OF BRITISH COLUMBIA, DEPT BOTANY


ncbi_isolation_source: metagenome

ncbi_organism_name: Pseudoflavonifractor sp. An184

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Colombia

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: Centre pasteur du Cameroun


ncbi_assembly_name: Rumen uncultured genome RUG10542

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Ligilactobacillus murinus


ncbi_submitter: ETH Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_isolation_source: root nodules

ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 122-Bd

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Escherichia sp.


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_strain_identifiers: Pasteur Institute Standard strain

ncbi_submitter: Saga University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar tolworthi


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. haemolyticus

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Blood

ncbi_submitter: WTSI


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Main Ward

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR30992

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Vienna


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Quanzhou Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Japan

ncbi_isolation_source: excrement

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: Rakuno Gakuen University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus sp. HMSC62D11

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter bilis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine


ncbi_country: Thailand: Satun

ncbi_isolation_source: tree bark

ncbi_organism_name: Sporolactobacillus sp. STSJ-5

ncbi_submitter: Faculty of pharmaceutical science, Chulalongkorn University


ncbi_assembly_name: Rumen uncultured genome RUG13356

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom: Scotland; Isle of Skye; Inner Hebrides

ncbi_isolation_source: mammary gland; supra mammary lymph node

ncbi_organism_name: Staphylococcus lutrae

ncbi_refseq_category: reference genome

ncbi_submitter: Illinois Institute of Technology

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_country: India

ncbi_isolation_source: urine

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Germany: Munchen

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


gtdb_type_species_of_genus: t

ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Hominilimicola fabiformis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: South Korea:Seoul

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Manitoba


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Petrimonas mucosa

ncbi_submitter: University of British Columbia


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Alkek Center for Metagenomics and Microbiome Research


ncbi_isolation_source: stool

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Leucobacter sp.

ncbi_submitter: University of Sorocaba (UNISO)


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: lake water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_organism_name: Segatella bryantii

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Enterococcus dongliensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Democritus University of Thrace


ncbi_country: China: Liaoning

ncbi_isolation_source: rearing water

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: Ghent University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Colon


ncbi_country: South Korea: Yesan

ncbi_isolation_source: waste mushroom compost

ncbi_organism_name: Pedobacter sp. BS3

ncbi_submitter: Hankyong National University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium P1123

ncbi_submitter: Washington University


ncbi_organism_name: Lacticaseibacillus sp. NRC_P2

ncbi_submitter: msa univeristy


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Turkey: Ankara

ncbi_isolation_source: blood culture; Ankara

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ankara Yildirim Beyazit University


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc031

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc031


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 76-2651


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Faecalispora jeddahensis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Dehong

ncbi_isolation_source: nodule

ncbi_organism_name: Sinorhizobium psoraleae

ncbi_strain_identifiers: CCBAU 65732

ncbi_submitter: University of Firenze


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Cambodia: National Pediatric Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Armed Forces Research Institute of Medical Sciences (AFRIMS)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Tasmania; Dairy Farm

ncbi_isolation_source: dairy equipment filters

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University of Tasmania


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W4b

ncbi_submitter: Chengdu University


ncbi_country: Taiwan

ncbi_isolation_source: pond water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;s__Candidatus Portnoybacteria bacterium CG10_big_fil_rev_8_21_14_0_10_40_22


ncbi_organism_name: Psychrobacter sp. T6-6

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerella sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Montreal; Quebec

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Washington


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus schweitzeri


ncbi_organism_name: Cellulomonas algicola

ncbi_submitter: Univercity of Yamanashi


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-L18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy: Apulia; Bari

ncbi_isolation_source: blood

ncbi_submitter: University of Bari "Aldo Moro", Bari, Italy


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Myxococcaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shanghai Jiao Tong University School of Medicine


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Zhejiang

ncbi_isolation_source: cooked food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Arctic Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Alteromonas sp. K632G

ncbi_submitter: Shandong University


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Streptococcus sp. HMSC068H01

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: AOP35_05H_surf _bin _16

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP35_05H_surf _bin _16

ncbi_submitter: Genoscope


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chungbuk National University


ncbi_organism_name: Escherichia sp. WS1384

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Bartonella bacilliformis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: ammonia-oxidizing enrichment culture

ncbi_organism_name: bacterium HR36

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-05065

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: EMG


ncbi_organism_name: uncultured Campylobacterales bacterium


ncbi_country: Japan

ncbi_strain_identifiers: BGSC 4AE1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar amagiensis


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Candidatus Anaerobiospirillum pullicola

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shenzhen

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: BGI


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Yangzhou University


ncbi_organism_name: Caballeronia sp. LZ043

ncbi_submitter: University of Texas at Arlington


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFCSPHIGHO2_12_FULL_51_37


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: Uppsala University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium septicum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: San Diego; CA

ncbi_isolation_source: Base of telephone pole adjacent to curb outs ide entrance to surfing area at Malibu

ncbi_organism_name: Sporosarcina sp. P10

ncbi_submitter: University of Arizona


ncbi_organism_name: Candidatus Blochmanniella camponoti

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Blochmanniella;s__Candidatus Blochmanniella camponoti


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sphingobacterium multivorum


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Clostridiales bacterium UBA3948

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Saccharimonadota bacterium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Fecal samples from a 12-year-old male koala named Zagget

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium Zag_1


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: USA: Wyoming

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: University of Bern


ncbi_organism_name: Escherichia coli O16:H48

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Acinetobacter baumannii 44327_2

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Ethiopia

ncbi_organism_name: Fluoribacter dumoffii

ncbi_submitter: Danish Technical University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V10_P2A27P122

ncbi_submitter: Instituto de ecologia


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: University of Oldenburg


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Southwest Minzu University


ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Nocardia sp. NPDC019309

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS3

ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_organism_name: Rhizobium sp.


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Schnuerera sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Anaerovibrio sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Hespellia sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pantoea agglomerans


ncbi_country: Russia: Moscow

ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_strain_identifiers: VKPM Ac-1636

ncbi_submitter: Kurchatov Institute


ncbi_country: China: Dezhou

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Dezhou University


ncbi_organism_name: Photorhabdus heterorhabditis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Viet Nam:Hanoi

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Michigan


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0597

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: EMG


ncbi_organism_name: Myxococcota bacterium


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces albus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Novosphingobium lubricantis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Hainan Medical University


ncbi_organism_name: Streptomyces sp. NBC_01620

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University


ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Pseudomonas prosekii

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)


ncbi_organism_name: Streptomyces sp. NPDC007984

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Vogelbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;x__unclassified Candidatus Vogelbacteria;s__Candidatus Vogelbacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14565

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Ketobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Quisquiliibacterium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Enorma sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: Guatemala: Guatemala

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Wuhu City; Anhui Province

ncbi_isolation_source: activated sludge

ncbi_organism_name: Arenimonas caeni

ncbi_submitter: Anhui Normal University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Burkholderiales bacterium


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Actinobacillus;s__Actinobacillus pleuropneumoniae;x__Actinobacillus pleuropneumoniae serovar 3;x__Actinobacillus pleuropneumoniae serovar 3 str. JL03


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ130916B_bin-422

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_assembly_name: Rumen uncultured genome RUG11296

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Bacteroides ovatus


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Australia: Queensland; Lake Wivenhoe

ncbi_isolation_source: freshwater

ncbi_organism_name: Cylindrospermopsis raciborskii S10

ncbi_submitter: Griffith University


ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_country: Antarctica: Taylor Dry Valley

ncbi_isolation_source: Near-surface active layer soil samples from the polygonal terrain

ncbi_organism_name: Chromatiales bacterium USCg_Taylor

ncbi_submitter: Princeton University


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Dyella sp.

ncbi_submitter: Guangxi University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Butyricicoccus pullicaecorum


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Helsinki


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S34

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California; Middletown

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Sri Lanka

ncbi_isolation_source: urine

ncbi_submitter: Faculty of Medicine, University of Colombo


ncbi_organism_name: Klebsiella sp. 92358

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: China: Jinan; The Second Hospital of Shandong University

ncbi_isolation_source: Urine sample

ncbi_submitter: ShanDong University


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Oscillospiraceae bacterium VE202-24

ncbi_submitter: The University of Tokyo


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: USA: St. Louis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: South Korea: Suwon

ncbi_organism_name: Xanthomonas citri pv. glycines

ncbi_submitter: National Institute of Crop Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_country: Romania: Targoviste

ncbi_isolation_source: Wastewater Effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: Thailand: Chiang Rai Province

ncbi_isolation_source: rice leaf

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Cornell University


ncbi_organism_name: Brucella suis F5/05-10

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: South Africa: Mpumalanga

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 231

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Paenibacillus thiaminolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil from wetland

ncbi_organism_name: Massilia sp. TS11

ncbi_submitter: Hankyong National University


ncbi_country: USA

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Hungary: Tatabanya

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Semmelweis University


ncbi_country: France: Montpellier

ncbi_isolation_source: insect rearing in EBCL quarantine

ncbi_organism_name: Serratia montpellierensis

ncbi_submitter: USDA-ARS


ncbi_country: India: Haryana

ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus luminescens

ncbi_submitter: Vishal Somvanshi's shared submissions


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Legionella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Chile: Tarapaca Salar de Huasco

ncbi_isolation_source: shallow sediments of the Salar de Huasco lagoon

ncbi_organism_name: Desulfatitalea sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: Water from cooling tower

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_submitter: SC


ncbi_country: Cuba

ncbi_organism_name: Streptomyces sp. WAC05292

ncbi_submitter: McMaster University


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: USA: Georgia

ncbi_isolation_source: Vidalia onion field

ncbi_organism_name: Pantoea stewartii subsp. indologenes

ncbi_submitter: University of Georgia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Jeonbuk National University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Rhizobiales bacterium TMED28

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Afipia carboxidovorans OM5

ncbi_submitter: Mississippi State University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Pseudomonas capeferrum

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 8 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: Ireland: Dublin

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Maynooth University


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Naval Medical Research Center


ncbi_organism_name: Streptomyces sp. NPDC059861

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Halomonas sp. AOP42-C2-25

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Canada: Guelph

ncbi_isolation_source: paw

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Italy

ncbi_isolation_source: ready to eat food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolate: Imperialibacter sp. 75

ncbi_organism_name: Imperialibacter sp. 75

ncbi_strain_identifiers: Imperialibacter sp. 75

ncbi_submitter: Station Biologique de Roscoff - Sorbonne Universite/CNRS


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Instituto de Biotecnologia y Biologia Molecular


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Beijing

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: China: Guizhou province

ncbi_isolation_source: tobacco rhizosphere soil

ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: Shandong Agricultural University


ncbi_organism_name: Aedoeadaptatus coxii


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: chicken feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: China CDC


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Verrucomicrobia bacterium UBA2644

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA2644


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- AM-sed-core1-D0_bin-720

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Teredinibacter turnerae T0609

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_country: Pacific Ocean

ncbi_isolation_source: North Pacific Ocean

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: puncture

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_organism_name: Deinococcus aquiradiocola

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil: Palmas

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Saudi Arabia:Jeddah

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_country: Puerto Rico: MANATI

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: MO

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: Belgium

ncbi_organism_name: Buchnera aphidicola (Periphyllus lyropictus)

ncbi_strain_identifiers: Pl-LLN

ncbi_submitter: Universite catholique de Louvain


ncbi_assembly_name: freshwater MAG --- LJ-3-15m_bin-0357

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Thailand: Trang

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: The ithree institute


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Thiovulum sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Germany

ncbi_organism_name: Hallella faecis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea

ncbi_organism_name: Bacillus amyloliquefaciens CC178

ncbi_submitter: National Academy of Agricultural Science, RDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens;x__Bacillus amyloliquefaciens CC178


ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. G-M30

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Foot panel of ARED on ISS

ncbi_submitter: Desert Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Dialister sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: host s whole body

ncbi_organism_name: Candidatus Sodalis sp. SoCistrobi

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Candidatus Sodalis sp. SoCistrobi


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_isolation_source: BLOOD


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Portugal: Porto

ncbi_isolation_source: Lettuce

ncbi_organism_name: Acinetobacter sp. Ac_5812

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Lacombe

ncbi_organism_name: Allisonella histaminiformans

ncbi_submitter: AAFC


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Colombia: Buenaventura; Valle del Cauca

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis 38765

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridiales bacterium


ncbi_country: Qatar

ncbi_isolation_source: Retail Chicken Carcasse

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_country: Italy

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China

ncbi_isolation_source: food

ncbi_submitter: CFSA


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Enterobacter cloacae complex sp. SHL008

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL008


ncbi_organism_name: Paraburkholderia sp. GAS333

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Tractidigestivibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Methylobacillus sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_assembly_name: freshwater MAG --- UppL4_bin-386

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Solomon Islands

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudoalteromonas sp. S2721

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0132

ncbi_submitter: Broad Institute


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_54_22


ncbi_submitter: INSTITUT PASTEUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae SA1


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Allegan County; MI

ncbi_isolation_source: Baseline Lake

ncbi_organism_name: Microcystis aeruginosa BS11-05

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Dakarella massiliensis

ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_527L22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Portugal: Azores

ncbi_isolation_source: soil

ncbi_strain_identifiers: BGSC 4CB1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar azorensis


ncbi_country: USA

ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Arthrobacter sp. ISL-5

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium


ncbi_country: USA: VA Richmond

ncbi_submitter: Ares Genetics GmbH


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef fabrication equipment surface

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Sphingopyxis sp. JAI128

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark

ncbi_isolation_source: Chicken meat

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sandarakinorhabdus limnophila DSM 17366

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Buchnera aphidicola (Neophyllaphis podocarpi)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: BIFSCo Region 5

ncbi_isolation_source: bovine pre-evisceration carcass

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. USDA-ARS-USMARC-1880


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Pseudomonas sp. fls2-241-TYG-175

ncbi_submitter: University of Chicago


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Croatia: Zagreb

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: phyllosphere

ncbi_organism_name: Pseudomonas sp. S34

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland


ncbi_isolation_source: rectal swab

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Azorhizobium caulinodans

ncbi_submitter: Instituto de Salud Carlos III


ncbi_country: South Korea: Seoul

ncbi_isolation_source: soil

ncbi_organism_name: Nocardioides jejuensis

ncbi_submitter: Seoul Women's University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Cloacibacillus sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. BIOS-E4-1

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_02_FULL_46_47


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_submitter: Nankai University


ncbi_organism_name: Paraburkholderia bannensis

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: Respiratory

ncbi_organism_name: Neisseria sp. HMSC03D10

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Massilia sp.

ncbi_submitter: University of California-Riverside


ncbi_organism_name: Streptomyces sp. NPDC056086

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Bdellovibrionales bacterium GWA2_49_15

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alteromonas sp.


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 168

ncbi_submitter: Oregon State University


ncbi_organism_name: Streptomyces sp. TR06-5

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Antarctica: Fumarole Bay; Deception Island

ncbi_isolation_source: sediment

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Escherichia coli R424

ncbi_submitter: Broad Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium sp. MSK.17.10

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Bangladesh: Matlab

ncbi_isolation_source: drinking water

ncbi_organism_name: Escherichia coli

ncbi_submitter: icddr,b


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F36699


ncbi_organism_name: Citrobacter youngae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Streptomyces sp. NPDC058664

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Streptomyces puniciscabiei

ncbi_submitter: USDA Agricultural Research Service


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Salmonella sp. NW1268

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Pseudogracilibacillus auburnensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas sp. GLN_3

ncbi_submitter: WenZhou Medical University


ncbi_isolate: AOP38_B2_surf _bin _13

ncbi_organism_name: Alkalibacterium gilvum

ncbi_strain_identifiers: AOP38_B2_surf _bin _13

ncbi_submitter: Genoscope


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Bergen


ncbi_organism_name: Nocardiopsis alba


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_country: Canada: Quebec

ncbi_isolation_source: blood

ncbi_organism_name: Anaerobiospirillum sp. NML120511

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Candidatus Aminicenantales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;x__unclassified Candidatus Aminicenantales;s__Candidatus Aminicenantales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Huazhong Agricultural University


ncbi_country: Angola

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces echinatus

ncbi_submitter: King Mongkut's Institue of Technology Ladkrabang


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Priestia megaterium


ncbi_country: USA: Monroe; NC

ncbi_organism_name: Erwinia persicina

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Normandy

ncbi_isolation_source: cutaneous/wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_country: Canada: BC

ncbi_isolation_source: pavilion lake microbialites

ncbi_organism_name: Exiguobacterium chiriqhucha RW-2

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium chiriqhucha;x__Exiguobacterium chiriqhucha RW-2


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Agrobacterium tumefaciens


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_organism_name: uncultured Mariniphaga sp.


ncbi_country: China: Zigong; Sichuan Province

ncbi_isolation_source: bloodstream

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: intestinal tract

ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Longyan University


ncbi_country: Norway: near Austertana

ncbi_isolation_source: small freshwater lake

ncbi_organism_name: Polynucleobacter sp. AP-Elch-400A-B2

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen people's hospital


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Denmark: Aarhus

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Paludibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Sierra Leone

ncbi_isolation_source: Human sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: TU Delft


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_strain_identifiers: NNAb 2487

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: China: Shandong

ncbi_isolation_source: feces

ncbi_submitter: Shandong University


ncbi_organism_name: Candidatus Woykebacteria bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woykeibacteriota;x__unclassified Candidatus Woykebacteria;s__Candidatus Woykebacteria bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: SC


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: AAFC


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: University of Pittsburgh


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Mameliella alba

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Shimwellia blattae


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: The East China Sea

ncbi_isolation_source: shallow sea; symbosis with harmful algal bloom algae

ncbi_organism_name: Ponticoccus alexandrii

ncbi_submitter: First Institute of Oceanography, MNR