ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp A-4

ncbi_strain_identifiers: Hp A-4

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Sorangium sp. So ce341

ncbi_strain_identifiers: So ce341

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce341


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China agricultural university


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_submitter: Sichuan University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Laboratory of Applied Microbiology, Department of Food and Cosmetic Science, Faculty of Bioindustry, Tokyo University of Agriculture


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Ulvibacter sp.


ncbi_isolate: Frankia Hr75

ncbi_organism_name: Frankia sp. Hr75.2

ncbi_strain_identifiers: Frankia Hr75


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Lactococcus taiwanensis

ncbi_refseq_category: reference genome

ncbi_submitter: DANKOOK UNIVERSITY


ncbi_isolation_source: food additive Bio-Kult infantis

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: Estonia

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_submitter: University of Georgia


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: fresh water

ncbi_organism_name: Deinococcus grandis

ncbi_submitter: RIKEN, BDR


ncbi_organism_name: Bacillus sp. YIM B13432

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13432


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_genome_category: derived from single cell

ncbi_organism_name: Magnetococcales bacterium HHB-1

ncbi_submitter: Institute of Oceanology Chinese Academy of Sciences


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus cereus group sp. BceL145

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL145


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Abiotrophia defectiva

ncbi_submitter: EMG


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Ammonifex sp.

ncbi_submitter: University of Southern California


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China

ncbi_organism_name: Veillonella parvula

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22794;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: hindgut

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Parepulonipiscium;x__unclassified Candidatus Parepulonipiscium;s__Candidatus Parepulonipiscium sp. PG-Nuni2H_MBin01


ncbi_isolation_source: Cladonia metagenome

ncbi_organism_name: Sphingomonas bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_submitter: Max von Pettenkofer-Institut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;s__Yersinia enterocolitica;sb__Yersinia enterocolitica subsp. palearctica;x__Yersinia enterocolitica subsp. palearctica YE-P1


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Serbia: Futog

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Georgia

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: CCUG 41451 T

ncbi_organism_name: Neisseria mucosa

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Maunalua Bay; Oahu; Hawaii

ncbi_isolation_source: Sand flats

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Siminovitchia fortis


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia

ncbi_isolation_source: Grenache

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: chicken caecal content


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: CA

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI


ncbi_country: Russia: Krasnodar Krai

ncbi_isolation_source: paddy soil

ncbi_organism_name: Pseudarthrobacter sp. BIM B-2242

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_assembly_name: Burkholderia sordidicola LMG 22029

ncbi_isolation_source: fungus

ncbi_organism_name: Caballeronia sordidicola

ncbi_submitter: LM-UGent

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Italy

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: equine clinic

ncbi_submitter: University of Veterinary Sciences


ncbi_country: Austria

ncbi_organism_name: Aeromonas salmonicida subsp. smithia

ncbi_submitter: Universite Laval


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_submitter: University of Manitoba


ncbi_isolation_source: wound swab

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Kitasatospora indigofera

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: CEITEC VFU


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0372

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: raw milk: raw milk (sheep)

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: Canada: Lacombe

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Morgantown; WV

ncbi_isolation_source: laboratory

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: West Virginia University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: Erythrobacter citreus LAMA 915 v1

ncbi_country: Atlantic Ocean: Rio Grande Rise; Mid-Atlantic Ridge

ncbi_isolation_source: deep sea water collected

ncbi_organism_name: Qipengyuania citrea LAMA 915

ncbi_strain_identifiers: LAMA 915

ncbi_submitter: Universidade do Vale do Itajai (UNIVALI)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_isolation_source: plant metagenome

ncbi_organism_name: uncultured Caulobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Novosphingobium sp. PhB165

ncbi_submitter: DOE Joint Genome Institute


gtdb_type_species_of_genus: t

ncbi_organism_name: Rhodoglobus vestalii


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG149

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangxi

ncbi_isolation_source: Rhizosphere of camphor trees

ncbi_organism_name: Pseudomonas sp. BN417


ncbi_organism_name: Candidatus Arthromitus sp. SFB-rat-Yit

ncbi_strain_identifiers: SFB-rat-Yit

ncbi_submitter: Center for Omics and Bioinformatics, Graduate School of Frontier Sciences, University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__unclassified Candidatus Neoarthromitus;s__Candidatus Arthromitus sp. SFB-rat-Yit


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces durmitorensis

ncbi_submitter: Hunan Institute of Agricultural Biotechnology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sphingobium sp.

ncbi_submitter: EMG


ncbi_country: Algeria: Souk El Tenine

ncbi_isolation_source: lung lesion

ncbi_organism_name: Mycolicibacter algericus DSM 45454

ncbi_submitter: Uppsala University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Ruminiclostridium sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Brachybacterium rhamnosum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0216R

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-04791

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG654

ncbi_organism_name: uncultured Olsenella sp.


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_isolation_source: kefir

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: SysMilk


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: metabat2_XCR1_HET_7832_bwa.103 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HET_7832_bwa.103 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: National Center for Disease Control and Public Health (NCDC) of Georgia


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Bacillaceae bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Yoonia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter sp. Brlt_5

ncbi_submitter: Banaras Hindu University


ncbi_submitter: concordia university


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces mutabilis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hopital Bicetre


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: WHOI

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Thioclava electrotropha


ncbi_country: China: Beijing

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China CDC


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Rhizobiales bacterium CCH10-E5

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: uncultured Polymorphobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG14437

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus suis YS23

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Belarus: Mogilev

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_assembly_level: Chromosome

ncbi_country: Japan: Iida

ncbi_isolation_source: Japan: Iida

ncbi_submitter: Bellevue University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Cereibacter;s__Cereibacter sphaeroides;x__Cereibacter sphaeroides f. sp. denitrificans


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Xylanibacter rodentium


ncbi_country: Russia: Moscow

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-0120

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter guerrae

ncbi_submitter: Toho University


ncbi_country: Italy

ncbi_isolation_source: stool

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Blood from newborn

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Gyeonggi-do Agricultural research & Extension Services


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: EMG


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Australia: Melbourne

ncbi_isolation_source: wound

ncbi_submitter: Monash University


ncbi_country: Denmark

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: Pakistan

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: Belgium: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Southampton


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Breast milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1242

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolate: CB4 bin31

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: CB4 bin31

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chicago


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from transplant house

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: China: Shangqiu

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: no molasses with increasing thiocyanate

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: ICAR National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)


ncbi_organism_name: Staphylococcus sp. AtDRG32

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus sp. 1P10SD

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 1P10SD


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Exeter University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Microcoleus sp. AT3-A2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Longimicrobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Lactobacillus sp. ESL0785

ncbi_submitter: University of Lausanne


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: Germany

ncbi_isolation_source: semi-finished milk product

ncbi_organism_name: Pseudomonas sp. WS 5013

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: South China University of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Longibacter sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Can Tho University


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Shandong University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Parma


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Pseudomonas sp. YQ_3

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nanchang University


ncbi_isolation_source: cold seep

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-1427

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-01

ncbi_submitter: Rothamsted Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: AgResearch


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University and Research


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Flavobacterium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: environmental

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: stool

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Mycolicibacterium diernhoferi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Marinicauda pacifica

ncbi_submitter: Shandong University


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Blood culture

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Alistipes sp.


ncbi_country: Thailand: Songkhla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Emcibacteraceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Amycolatopsis sp. NPDC023774

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: China: Guangxi

ncbi_organism_name: Shigella flexneri


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Lachnoclostridium phocaeense

ncbi_submitter: URMITE


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-796

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_organism_name: Collinsella intestinalis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Chryseobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli 38.16

ncbi_submitter: University Medical Center Utrecht


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Peru: Huaylas; Ancash

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Bartonella bacilliformis Cond044

ncbi_submitter: Broad Institute


ncbi_country: USA: North Carolina; Durham

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: South Korea

ncbi_isolation_source: Liver and air sac

ncbi_organism_name: Escherichia coli O2:K1:H4

ncbi_strain_identifiers: APEC E12053

ncbi_submitter: Seoul National University


ncbi_organism_name: Deinococcus carri

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: Russia: Moscow

ncbi_isolation_source: salted beef

ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: Kurchatov genome center


ncbi_isolation_source: Faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0385


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Micrococcus aloeverae

ncbi_submitter: King's College London


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Yersinia bercovieri


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Haliscomenobacter sp.

ncbi_submitter: Aalborg University


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Coneutiohabitans;s__Candidatus Coneutiohabitans thermophilus


ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Guangdong

ncbi_isolation_source: wetland sediment

ncbi_organism_name: Polyangium sp. 6x1

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: JCE

ncbi_organism_name: Neobacillus jeddahensis

ncbi_strain_identifiers: JCE

ncbi_submitter: URMITE


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Thalassospira xiamenensis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_organism_name: Calidithermus timidus DSM 17022

ncbi_submitter: DOE Joint Genome Institute


ncbi_strain_identifiers: CVCC 503

ncbi_submitter: Dalian University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: Fusobacterium nucleatum


ncbi_organism_name: Morganella morganii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Auckland


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Singapore

ncbi_isolation_source: hand hygiene sink aerator of the surgical stepdown ward in National University Hospital

ncbi_organism_name: Elizabethkingia anophelis NUH6

ncbi_submitter: SCELSE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: SponGES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Faculty of Science, Masaryk University


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Candidatus Nitrotoga sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;f__Gallionellaceae;g__Candidatus Nitrotoga;x__unclassified Candidatus Nitrotoga;s__Candidatus Nitrotoga sp.


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Serratia sp. (in: enterobacteria)

ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. (in: enterobacteria)


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 108

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Amity University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: USA: Ohio

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: China: Wenzhou

ncbi_isolation_source: Pus

ncbi_submitter: wenzhou medical university


ncbi_organism_name: Helicobacter hepaticus


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Hungary: Szeged wastewater treatment plant

ncbi_isolation_source: Anaerobic sludge from Szeged Municipal wastewater plant s biogas plant Biogas Plant

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Szeged

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: South Korea

ncbi_organism_name: Weissella cibaria

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Belgium

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Canada: Quebec City

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Argentina

ncbi_organism_name: Shigella sonnei


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Blautia producta

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium matruchotii


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pandoraea apista

ncbi_submitter: Public Health England


ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: Moskow Lomosonov State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Intestine of adult

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Parma


ncbi_country: USA

ncbi_isolation_source: WOUND/ABSCESS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: India

ncbi_isolation_source: fish meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: In-house environment

ncbi_submitter: South China Agricultural University


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Japan

ncbi_isolation_source: Sputum

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: IMG-taxon 2622736533 annotated assembly

ncbi_organism_name: Aequorivita viscosa

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Gribaldobacteria;s__bacterium (Candidatus Gribaldobacteria) CG10_big_fil_rev_8_21_14_0_10_33_41


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Hangzhou

ncbi_isolation_source: traditional pickle

ncbi_organism_name: Companilactobacillus heilongjiangensis

ncbi_submitter: Zhejiang University


ncbi_isolation_source: blood


ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10594

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Kenya

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Halalkalibacterium halodurans

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halalkalibacterium (ex Joshi et al. 2022);s__Halalkalibacterium halodurans


ncbi_organism_name: Priestia megaterium


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2872800

ncbi_submitter: IGS


ncbi_organism_name: Burkholderia anthinoferrum

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: India: Mawsmai Cave; Meghalaya

ncbi_isolation_source: Sediment sample

ncbi_organism_name: Parapedobacter sp. ISTM3

ncbi_submitter: Jawaharlal Nehru University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Empedobacter sp. UBA5036

ncbi_submitter: University of Queensland


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Firmicutes bacterium UBA1768

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA1768


ncbi_organism_name: Pseudarthrobacter quantipunctorum

ncbi_submitter: Universidad Andres Bello


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Weihai

ncbi_isolation_source: marine sediment from the coast of Weihai

ncbi_organism_name: Flagellimonas sp. S3867

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: endoscope

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: NY; Erie County

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Salmonella enterica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacillus sp. JJ1532

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ1532


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Megasphaera sp. UBA7761


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_country: Pakistan: Burewala; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. Bo_39

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Romboutsia ilealis


ncbi_country: South Africa: Westen Cape

ncbi_isolation_source: Paediatrics (haematology)

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Chlamydia trachomatis E/SotonE8

ncbi_submitter: Sanger Institute


ncbi_organism_name: Bacillus sp. CGMCC 1.60114

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CGMCC 1.60114


ncbi_assembly_name: Rumen uncultured genome RUG11599

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-2094

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: China: Xiamen

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xiaohegou

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B2824

ncbi_submitter: China Agricultural University


ncbi_country: USA: Ohio

ncbi_organism_name: Marinobacter persicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Horse feces

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: NODAI Genome Research Center, Tokyo University of Agriculture


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacterium sp. HOS204

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Pseudomonas sp. NPDC077405

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thermoflexus sp.


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Bifidobacterium angulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YJX

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Oxydemutatoraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Colombia: Santa Marta bay

ncbi_isolation_source: coral reef

ncbi_organism_name: Stappia indica

ncbi_strain_identifiers: SBBC 49

ncbi_submitter: National University of Colombia


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Yersinia enterocolitica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 321

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 2135

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Ribeirao Preto

ncbi_isolation_source: Grass

ncbi_organism_name: Pseudomonas sp. BGr12

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Bacillus paralicheniformis

ncbi_strain_identifiers: NCTC 8721

ncbi_submitter: NIZO food research


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: oil production facility

ncbi_organism_name: Thermovirga lienii

ncbi_submitter: University of Queensland


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Clostridium neonatale

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Helicobacter sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudanabaenales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Utah


ncbi_submitter: Kansas State University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: United Kingdom: London

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_assembly_name: WHOZ

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: WTSI


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf339

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Streptomyces sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Australia

ncbi_isolation_source: North Queensland;Australia

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Davis; CA

ncbi_organism_name: Pajaroellobacter abortibovis

ncbi_submitter: University of California, Davis


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_country: Laos

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Xenorhabdus doucetiae

ncbi_strain_identifiers: DI

ncbi_submitter: Centro de Investigaciones y Transferencias, Universidad Nacional de Villa Maria (CIT-CONICET)


ncbi_country: Israel: Tel-Aviv

ncbi_submitter: Tel-Aviv University


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_isolation_source: water

ncbi_organism_name: Cyanobacteria bacterium UBA7694

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA7694


ncbi_country: Spain: Huelva

ncbi_isolation_source: pond water

ncbi_organism_name: Idiomarina aquatica

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_country: China

ncbi_isolation_source: molybdenum mine

ncbi_organism_name: Bacillus sp. LM 4-2

ncbi_submitter: Henan University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LM 4-2


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_country: China: Shandong

ncbi_isolation_source: blood


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA7877


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Erysipelotrichia;o__Erysipelotrichales;f__Coprobacillaceae;g__Eggerthia;s__Eggerthia catenaformis;x__Eggerthia catenaformis OT 569 = DSM 20559


ncbi_country: France: Besancon

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_assembly_name: Rumen uncultured genome RUG14878

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: France

ncbi_isolation_source: urine

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes shahii

ncbi_submitter: AAFC


ncbi_country: Trinidad and Tobago

ncbi_isolation_source: Medical/diagnostic sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Spain: Marismas del Odiel; Huelva

ncbi_isolation_source: Saline soil

ncbi_organism_name: Terrihalobacillus insolitus

ncbi_submitter: University of Sevilla, Spain


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Denmark

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_organism_name: Salmonella sp. C3325

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: Bedsores

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_submitter: Curtin University


ncbi_organism_name: Xanthomonas hortorum pv. hederae

ncbi_strain_identifiers: WHRI 7219

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Australia: Gold Coast

ncbi_isolation_source: Nose

ncbi_submitter: The University of Queensland


ncbi_country: Antarctica: Livingston island

ncbi_organism_name: Exiguobacterium antarcticum

ncbi_submitter: Sofia University "St. Kliment Ohridski"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium antarcticum


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Bacillota bacterium


ncbi_country: Chile: Santiago

ncbi_isolation_source: nasal mucosa

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Andres Bello University


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 596866-70


ncbi_isolate: AOP35_05H_surf _bin _18

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP35_05H_surf _bin _18

ncbi_submitter: Genoscope


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Thomasclavelia ramosa


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: uncultured Hyphomonadaceae bacterium


ncbi_organism_name: gamma proteobacterium SCGC AAA300-D14

ncbi_strain_identifiers: SCGC AAA300-D14

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium SCGC AAA300-D14


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Paraburkholderia sp. BL17N1


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: TWING UPHL SUBMISSION GROUP


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas sp. COT-052 OH4946

ncbi_submitter: UC Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas;x__unclassified Porphyromonas;s__Porphyromonas sp. COT-052 OH4946


ncbi_assembly_name: Rumen uncultured genome RUG12325

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Deinococcales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Ghiorsea sp.

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;o__Mariprofundales;x__Mariprofundales incertae sedis;g__Ghiorsea;x__unclassified Ghiorsea;s__Ghiorsea sp.


ncbi_country: Puerto Rico

ncbi_isolation_source: Seawater

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Japan: Tokyo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Weissella cibaria

ncbi_submitter: University of Chicago


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_country: China: Wuliangsuhai

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_country: Germany: Hamburg

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria animalis

ncbi_submitter: Illinois Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_assembly_name: IMG-taxon 2619619037 annotated assembly

ncbi_organism_name: Antarctobacter heliothermus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_submitter: University hospital Lubeck


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Duke University


ncbi_country: South Korea

ncbi_isolation_source: Grape

ncbi_organism_name: Brevundimonas vitisensis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Campylobacter hyointestinalis


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: Australia

ncbi_isolation_source: lungs

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_assembly_name: freshwater MAG --- Umea1_bin-3892

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Turicibacter sanguinis


ncbi_country: China: Zhejiang

ncbi_isolation_source: retail chicken

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pakistan: Faisalabad; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. F_17

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Universidad de Sonora


ncbi_country: USA:New York Genesee

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: Cornell University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_submitter: National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL