ncbi_country: India: Chandigarh

ncbi_isolation_source: Wound swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella sp.

ncbi_submitter: SAHMRI


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


gtdb_representative: t

ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Marinilabiliales bacterium

ncbi_submitter: KAIST


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: broiler chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: National Center for Food Safety Risk Assessment


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Parachristensenella avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Parachristensenella;s__Candidatus Parachristensenella avicola


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Snodgrassella sp.

ncbi_submitter: China Agricultural University


ncbi_country: Bahamas: San Salvador Island

ncbi_isolation_source: Runway 10 Reef (10-12 m)

ncbi_organism_name: Alteromonas sp. RKMC-009

ncbi_submitter: University of Prince Edward Island


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sea water

ncbi_organism_name: Psychrobacter cibarius

ncbi_submitter: shanghai ocean university


ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bifidobacteriaceae bacterium MCC02032

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Medical College of Yangzhou University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Yangjiang

ncbi_isolation_source: soil

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: The Fourth Hospital of Shijiazhuang


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Pseudoalteromonas sp. bablab_jr011

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Flavobacteriaceae bacterium UBA2542

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou; Zhejiang

ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Belgium:North sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Methyloceanibacter methanicus

ncbi_refseq_category: reference genome

ncbi_submitter: Ghent University

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Baltimore

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_country: USA: Old Alexandria Reservoir

ncbi_isolation_source: surface water collection during the winter

ncbi_organism_name: Janthinobacterium sp. NKUCC06_STL

ncbi_submitter: Northern Kentucky University


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: Salmonella enterica CVM N46836 v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Litchfield


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Yersiniaceae bacterium


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: California

ncbi_isolation_source: Bile fluid

ncbi_strain_identifiers: SY-A

ncbi_submitter: UCLA Medical Center


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: ETH Zurich


ncbi_organism_name: Variovorax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T64 sea water enriched with oil for 64 days

ncbi_organism_name: Rhodobacterales bacterium 56_14_T64

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: salt marsh mud

ncbi_submitter: Harvard Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio natriegens;x__Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Burkholderia sp. BCC1988

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Japan

ncbi_isolation_source: skin of face; 6 single-cells amplified by MDA combined with human skin metagenome reads

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: bioBiome, Inc.


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangdong

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: South Korea: Jeollabuk-do

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea University


ncbi_organism_name: Leptolyngbyales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Hong Kong

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: saltwater marsh; near Woods Hole; Massachusetts; USA

ncbi_organism_name: Vibrio gazogenes

ncbi_submitter: United Arab Emirates University


ncbi_country: USA: PA; Crooked Run

ncbi_organism_name: Duganella sp. BJB475

ncbi_submitter: Bard College


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Providencia sp. PROV050

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Center for Microbial Communities


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Gallimonas faecavium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecavium


ncbi_organism_name: Oceanococcaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: distillers  solubles

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Changshu Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptomyces sp. NPDC006516

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Middle ear fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: CEBITEC


ncbi_country: USA: Hawaii

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: MIT


ncbi_assembly_name: IMG-taxon 2651870318 annotated assembly

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: Hunan University of Arts and Science


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Spain: Almeria

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas sp. B2021

ncbi_submitter: Futureco Bioscience


ncbi_country: Antarctica

ncbi_organism_name: Rhodococcus sp. PAMC28707

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. PAMC28707


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F46785

ncbi_submitter: Broad Institute


ncbi_isolation_source: Paediatrics

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Guangzhou Medical University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: kidney stone

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Loyola University Chicago


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Crocinitomix sp.

ncbi_submitter: University of East Anglia


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MRSA


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Serratia marcescens


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Chlorobiales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Spain: Tous; Valencia

ncbi_isolation_source: freshwater reservoir from 13m depth

ncbi_organism_name: Opitutia bacterium Tous-C1TDCM

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium Tous-C1TDCM


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Arenicella sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudochelatococcus sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Neobacillus mesonae

ncbi_strain_identifiers: MER TA 107

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Toombs Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Bifidobacterium longum NCC2705

ncbi_submitter: Nestle Research Center, Switzerland


ncbi_country: USA: TX

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Avimonas narfae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas narfae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas narfae


ncbi_country: Denmark: Region of Southern Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Slagelse Hospital


ncbi_country: United Kingdom: England

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. coronafaciens


ncbi_country: China: Hefei

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Feces

ncbi_submitter: academisch medisch centrum


ncbi_country: USA: Grecian Rocks; Florida

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Helicobacter acinonychis str. Sheeba

ncbi_strain_identifiers: Sheeba

ncbi_submitter: Penn State Univ.


ncbi_organism_name: Lachnoclostridium phytofermentans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Candidatus Angelobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;g__Candidatus Angelobacter;x__unclassified Candidatus Angelobacter;s__Candidatus Angelobacter sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Auburn University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Chinese Center for Disease Control and Prevention


gtdb_type_species_of_genus: t

ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Sheuella amnicola

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA: New Orleans; LA

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: Pseudooceanicola nitratireducens

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. K2188

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K2188


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Caecum

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: 307th Hospital of PLA


ncbi_country: Greece

ncbi_isolation_source: urine

ncbi_submitter: University Hospital of Larissa


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Switzerland: Basel

ncbi_isolation_source: inguinal

ncbi_submitter: ETH Zurich


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Flagellimonas alvinocaridis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Phycisphaera sp.

ncbi_submitter: GNS Science


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: addis ababa university


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured bacterium


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: Germany: Berlin

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Bacteroides intestinavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Health Canada


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The General Hospital of the People's Liberation Army


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter geojensis

ncbi_submitter: Shantou University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Raoultella ornithinolytica

ncbi_strain_identifiers: Ngtc NS 23

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Humidesulfovibrio sp.

ncbi_submitter: Aarhus University


ncbi_country: China: Jiangsu

ncbi_isolation_source: anaerobic fermentation tank

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: food

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou university


ncbi_country: USA: Trunk River; Woods Hole; MA

ncbi_isolation_source: Estuary

ncbi_organism_name: Rhodovulum sulfidophilum

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Candidatus Aalborgiella aggregata

ncbi_submitter: Aalborg University


ncbi_organism_name: Gluconobacter oxydans

ncbi_submitter: Teagasc


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chungbuk National University


ncbi_organism_name: Sphingobium subterraneum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Moorellales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Chung Hsing University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Microbacterium sp. HA-8

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Mycoplasmatales bacterium


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Beijing

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Planococcus maritimus

ncbi_submitter: Tang lab


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Amycolatopsis sp. NPDC050768

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Apulia

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Kitasatospora sp. NPDC097643


ncbi_organism_name: Saccharothrix sp. CCNWYY140

ncbi_submitter: Northwest A&F University


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFTM


ncbi_organism_name: Rhizobium sp. PP-WC-1G-195

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Flavobacterium cheniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eubacterium limosum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_organism_name: Acinetobacter baumannii


ncbi_assembly_level: Chromosome

ncbi_country: Viet Nam

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_country: Algeria: Fetzara Lake

ncbi_isolation_source: algerian wetland

ncbi_organism_name: Streptomyces sp. E1N211

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_country: Germany

ncbi_isolation_source: Bronchial secretions/BAL

ncbi_submitter: SurvCARE


ncbi_country: USA

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: JMI Laboratories


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK405

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: USA: Seattle

ncbi_organism_name: Mycolicibacterium porcinum

ncbi_submitter: UW


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Luteococcus avicola


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong CDC


ncbi_organism_name: Agrobacterium sp. SORGH_AS_0440

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Eisenbergiella merdipullorum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Ireland

ncbi_isolation_source: Homo sapiens

ncbi_organism_name: Clostridioides difficile M68

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_isolation_source: shallow marine sediment [ENVO:03000034]

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Olavius sp. associated proteobacterium Delta 1


ncbi_organism_name: bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. BKH01

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Greece: Xanthi

ncbi_isolation_source: aquaculture (freshwater)

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Hunan

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio coralliirubri

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Yersinia rochesterensis

ncbi_submitter: Nanjing Agriculture University


ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: Oral cavity

ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: University of Nevada, Reno


ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Holophagales bacterium UBA5607

ncbi_submitter: University of Queensland


ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Beebe hydrothermal vent plume at at depth of 4900m

ncbi_organism_name: Dehalococcoidia bacterium UBA1152


ncbi_country: Brazil: Sao Paulo

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Aeromonas taiwanensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 99

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas sp. 17053703

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. S1D4-20

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Brazil: BA

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: FIOCRUZ


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Fokinia solitaria

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Fokinia;s__Candidatus Fokinia solitaria


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin106

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: MSU bin106

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Bacillota bacterium


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Micromonospora chalcea


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus sp. AZ126

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: USDA


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Limnoraphis sp.

ncbi_submitter: University of Queensland


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: bacterium


ncbi_country: Pacific Ocean: Costa Rica Margin

ncbi_isolation_source: Single ANME:SRB aggregates separated by FACS after BONCAT. Aggregates were obtained from sediment incubations of a sediment horizon from a push core collected at a methane seep site identified by a white bacterial mat. This site in the Costa Rica Margin is called  Jaco Scar . Sample is identified by sample# 10073.

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Chicken product

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Acidovorax defluvii

ncbi_submitter: department of plant and microbial biology


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: 1;4-Dioxane-contaminated groundwater

ncbi_organism_name: Pseudonocardia dioxanivorans

ncbi_submitter: CLEMSON UNIVERSITY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (5uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Enterococcus sp. C62

ncbi_submitter: Northwest A & F University


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_strain_identifiers: IEGM 1298

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: Mass on the auricle

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: Modernising Medical Microbiology


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Fibrobacter sp. UBA7025

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Cellvibrio sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: South Korea: Anseong

ncbi_isolation_source: ginseng cultivating soil

ncbi_organism_name: Microbacterium sp. 4R-513

ncbi_submitter: Hankyong National University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: CA

ncbi_isolation_source: feline cat lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Australia

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas australica


ncbi_organism_name: Oxalicibacterium solurbis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Mexico: Jala; Nayarit

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces albidoflavus

ncbi_strain_identifiers: Q

ncbi_submitter: Instituto Politecnico Nacional


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_country: China: Guangdong

ncbi_isolation_source: milk

ncbi_submitter: South China Agricultural University


ncbi_country: France: Nantes

ncbi_isolation_source: skin

ncbi_submitter: university of Nantes


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: University of Chicago


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Actinobacillus;s__Actinobacillus pleuropneumoniae;x__Actinobacillus pleuropneumoniae serovar 12;x__Actinobacillus pleuropneumoniae serovar 12 str. 1096


ncbi_country: United Kingdom

ncbi_isolation_source: Nasopharyngeal swab

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Slovakia

ncbi_isolation_source: uterus

ncbi_organism_name: Mycoplasma tauri

ncbi_submitter: Institute of Microbiology


ncbi_country: Japan

ncbi_isolation_source: Front yard where neighbor s dogs are kept

ncbi_organism_name: Sporosarcina sp. P30

ncbi_submitter: University of Arizona


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Streptococcus agalactiae STIR-CD-13

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China: Hong Kong

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_organism_name: Subdoligranulum sp. AM23-21AC

ncbi_submitter: BGI


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_assembly_name: IMG-taxon 2667527439 annotated assembly

ncbi_organism_name: Actinacidiphila guanduensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Puerto Rico: MANATI

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Salmonella sp. s58408

ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_submitter: MRSN BI Team


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolate: Bosea sp. 127

ncbi_organism_name: Bosea sp. 127

ncbi_strain_identifiers: Bosea sp. 127

ncbi_submitter: Elham Karimi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. 127


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: USA: Austin; Texas

ncbi_isolation_source: air

ncbi_organism_name: Buchnera aphidicola (Sarucallis kahawaluokalani)

ncbi_strain_identifiers: Ska

ncbi_submitter: University of Hawaii


ncbi_isolation_source: lake sediment

ncbi_organism_name: Bhargavaea beijingensis

ncbi_submitter: Pondicherry university


ncbi_isolation_source: culture pond

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ianjin University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Sichuan University


ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Geobacillus kaustophilus GBlys

ncbi_strain_identifiers: GBlys

ncbi_submitter: Institute of Genetic Resources, Faculty of Agriculture, Kyushu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus;x__Geobacillus thermoleovorans group;s__Geobacillus kaustophilus;x__Geobacillus kaustophilus GBlys


ncbi_country: Australia: near Moree; NSW

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp. WSM4305

ncbi_submitter: Curtin University


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Rumen uncultured genome RUG12067

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Stenotrophomonas bentonitica


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_country: Australia: North Queensland

ncbi_isolation_source: diseased larvae

ncbi_organism_name: Vibrio owensii 47666-1

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio owensii;x__Vibrio owensii 47666-1


ncbi_country: Nigeria: Benin-city

ncbi_isolation_source: Vaginal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Calgary


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Fervidobacterium gondwanense


ncbi_organism_name: Arcobacter sp. YIC-80

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: Argentina: Buenos Aires; pasture plains

ncbi_isolation_source: animal dung

ncbi_submitter: Facultad de Ciencias Exactas y Naturales Universidad de Buenos Aires es


ncbi_country: New Zealand

ncbi_isolation_source: peach

ncbi_organism_name: Pseudomonas viridiflava

ncbi_strain_identifiers: ICMP 8820

ncbi_submitter: New Zealand Institute for Plant & Food research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Virginia

ncbi_isolation_source: human

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Virginia


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio brasiliensis

ncbi_submitter: NSW Department of Primary Industries


ncbi_country: China: Shandong

ncbi_isolation_source: brain tissue

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: liaocheng university


ncbi_assembly_name: Eubacterium massiliense

ncbi_organism_name: Eubacterium sp. SB2

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. SB2


ncbi_organism_name: uncultured Faecalibaculum sp.


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Australia: Mungerannie; South Australia

ncbi_isolation_source: Artesian bore drain

ncbi_organism_name: Brevibacillus sp. MCWH

ncbi_strain_identifiers: MCWH

ncbi_submitter: Institute for Applied Ecology - University of Canberra


ncbi_country: Greece: Crete

ncbi_isolation_source: amberjack juveniles

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: human gut

ncbi_organism_name: Segatella copri

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Japan:Aichi; Toyohashi

ncbi_isolation_source: thermophilic anaerobic digestion reactor

ncbi_organism_name: Thermodesulfovibrio sp. Kuro-1

ncbi_submitter: Applied Chemistry and Life Science, Toyohashi University of Technology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK1 = NCTC 7863

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus sanguinis;x__Streptococcus sanguinis SK1 = NCTC 7863


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA4070

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4070


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodospirillaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yunnan Animal Science and Veterinary Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 6373

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14761

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: Oregon; Lane County

ncbi_isolation_source: louse from fur of Tamias townsendii

ncbi_organism_name: Candidatus Lightella neohaematopini

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__lice endosymbionts;g__Candidatus Lightella;s__Candidatus Lightella neohaematopini


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Butyricimonas sp.

ncbi_submitter: DOE JGI


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Corynebacterium callunae DSM 20147

ncbi_submitter: CeBiTec, Bielefeld University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Priestia megaterium

ncbi_submitter: James Cook University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: California; The Cedars; Campsite Springs

ncbi_isolation_source: Alkaline pool submerged anode electrode

ncbi_organism_name: Paenibacillus sp. Cedars

ncbi_strain_identifiers: Cedars

ncbi_submitter: National Institute for Material Science


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella michiganensis


ncbi_organism_name: Sphingobacterium faecium

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: brain

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- MJ130820A_bin-348

ncbi_organism_name: uncultured Sterolibacterium sp.


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E802

ncbi_submitter: JCVI


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Humicultor tengchongensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Humicultor;s__Candidatus Humicultor tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Humicultor;s__Candidatus Humicultor tengchongensis


ncbi_organism_name: Paenibacillus pabuli

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: McGill University - Macdonald Campus


ncbi_organism_name: Metamycoplasma equirhinis

ncbi_submitter: LABEO


ncbi_isolation_source: human skin

ncbi_organism_name: Roseburia faecis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptomyces sp. NPDC058875

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: OSC; Logy Bay; NL

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universidad Mayor


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Lanzhou; Gansu

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp. JYMT SZCCT0180

ncbi_strain_identifiers: JYMT SZCCT0180

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacillus cereus


ncbi_country: Chile

ncbi_organism_name: Saccharothrix sp. S26

ncbi_submitter: Kingston University London, United Kingdom


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_strain_identifiers: atEC


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky;x__Salmonella enterica subsp. enterica serovar Kentucky str. 29166


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC058758

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Conexibacteraceae bacterium


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_isolate: SPRUCE 417

ncbi_organism_name: Mycobacterium sp.

ncbi_strain_identifiers: SPRUCE 417

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Calgary


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Institute of Biotechnology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Nannocystis sp.

ncbi_submitter: EPFL


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: freshwater MAG --- B4coas_bin-0258

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: sediments

ncbi_organism_name: Psychroserpens algicola

ncbi_submitter: shandong university


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA

ncbi_organism_name: Escherichia coli O111:NM str. K6895

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. K6895


ncbi_isolation_source: human gut

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Subtercola frigoramans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Wyoming


ncbi_organism_name: Prevotella micans DSM 21469 = JCM 16134

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella micans;x__Prevotella micans DSM 21469 = JCM 16134


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Indian Ocean

ncbi_isolation_source: surface seawater

ncbi_organism_name: Oceaniglobus indicus

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_organism_name: Ruminococcus sp. TM463

ncbi_submitter: University of Chicago


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanyang Technological University


ncbi_submitter: Tecnologico de Monterrey


ncbi_assembly_name: freshwater MAG --- A-1_bin-249

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: South Pacific

ncbi_organism_name: Jannaschia sp. EhC01

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Nepal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Mexico

ncbi_submitter: UNAM


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: USA: Tattnall County; Georgia

ncbi_organism_name: Pantoea allii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: hospital patient with urinary tract infection

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Neisseria weixii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Henan

ncbi_isolation_source: milk

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Chinese Animal Health and Epidemiology Center


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria sp. HKCCD7255

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: France: Paris

ncbi_isolation_source: feacal

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Institut Pasteur


ncbi_submitter: PulseNet USA


ncbi_country: USA: Utqiagvik; Alaska CRREL Permafrost Tunnel

ncbi_isolation_source: Cryopeg brine water

ncbi_organism_name: Marinobacter sp. M3C

ncbi_submitter: University of Washington


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 50

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: infected leaves

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Incheon

ncbi_isolation_source: culture collection

ncbi_organism_name: Subtercola boreus

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Streptomyces soliscabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Streptomyces sp. NPDC002262

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1047

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Argentina: Tucuman

ncbi_isolation_source: Tucuman; Argentina

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: PROIMI - CONICET


ncbi_country: USA

ncbi_isolation_source: Infective endocarditits

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Georgia


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Rostock University Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Geobacillus thermoleovorans B23

ncbi_submitter: Hokkaido University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Anoxybacillaceae;g__Geobacillus;x__Geobacillus thermoleovorans group;s__Geobacillus thermoleovorans;x__Geobacillus thermoleovorans B23


ncbi_country: USA: near Point Barrow; Alaska

ncbi_isolation_source: sea ice

ncbi_organism_name: Pseudomonas sp. Choline-3u-10

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: France

ncbi_organism_name: Lactobacillus crispatus

ncbi_strain_identifiers: CIRM-BIA 2233

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Prevotella merdae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: uncultured Enterococcus sp.


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Planctomycetota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: aEPEC 51

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_country: New Zealand

ncbi_isolation_source: feces

ncbi_submitter: Massey University


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 10

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory, Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Italy: Lombardia; Bergamo province

ncbi_isolation_source: Sweet corn

ncbi_organism_name: Pantoea stewartii subsp. stewartii

ncbi_strain_identifiers: IPV-BO 2766

ncbi_submitter: University of Rome "La Sapienza"


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0154R

ncbi_submitter: Broad Institute


ncbi_assembly_name: Hainich-Omni-XIII

ncbi_isolate: Hainich-Omni-XIII

ncbi_isolation_source: unknown

ncbi_organism_name: Omnitrophica bacterium GWA2_41_15

ncbi_strain_identifiers: Hainich-Omni-XIII

ncbi_submitter: UNIVERSITY OF JENA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Omnitrophica bacterium GWA2_41_15


ncbi_organism_name: Falsigemmobacter intermedius

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Collection de l'Institut Pasteur