ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Canada: Ontario

ncbi_genome_representation: full

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Campinas

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: India: Uttar Pradesh; Jalaun; Odotpura

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Japan

ncbi_organism_name: Streptobacillus notomytis

ncbi_refseq_category: reference genome

ncbi_submitter: Robert Koch Institute


ncbi_country: India

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


gtdb_representative: t

ncbi_country: USA: Mesa; Arizona

ncbi_isolation_source: anaerobic sludge

ncbi_organism_name: Pleomorphomonas carboxyditropha

ncbi_submitter: Arizona State University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Candidatus Nanopelagicus abundans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus abundans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;s__Candidatus Nanopelagicus abundans


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: France: Tours

ncbi_isolation_source: blood

ncbi_organism_name: Helicobacter sp. TUL

ncbi_strain_identifiers: TUL

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Maricaulis sp.

ncbi_submitter: Tang lab


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Leucobacter muris

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa Z61

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SurvCARE


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Instituto Nacional de Pediatria


ncbi_submitter: University of Florida


ncbi_organism_name: Cysteiniphilum litorale

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Chinese Medicine


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Duganella sp. CT11-25

ncbi_submitter: North Carolina State University


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Shandong University


ncbi_organism_name: Salmonella sp. SAL04283

ncbi_submitter: Zhejiang university


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Negativibacillus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_assembly_level: Chromosome

ncbi_organism_name: Rhodothermus marinus

ncbi_submitter: Matis Itd.


ncbi_organism_name: Asticcacaulis sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: GreatLife


ncbi_isolate: metabat2_XCR1_HOM_7864_bwa.55 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HOM_7864_bwa.55 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Halobacillus mangrovi

ncbi_submitter: Institute of Marine Science


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium


ncbi_organism_name: Propionibacterium sp. KPL2005

ncbi_submitter: Broad Institute


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Enterococcus sp. C47

ncbi_submitter: Northwest A & F University


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf29

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Australia: Brisbane

ncbi_isolation_source: nasopharynx sample from patient HS-CRS-17

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Calgary


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Calgary

ncbi_organism_name: Staphylococcus hominis


ncbi_country: Pakistan

ncbi_isolation_source: bovine milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: Texas

ncbi_isolation_source: pilonidal cyst

ncbi_organism_name: Cellulomonas hominis

ncbi_strain_identifiers: ATCC BAA-786

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of three-weeks old elephant

ncbi_submitter: University of Queensland


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Alphaproteobacteria bacterium CMAR1

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: University of Copenhagen


ncbi_country: Spain: Barcelona

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_country: China: Xinjiang No.1 glacier

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. Sr18

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Micromonospora sp. CPCC 206061

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_organism_name: Maritalea myrionectae DSM 19524

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: North Carolina

ncbi_isolation_source: soil

ncbi_organism_name: Eleftheria terrae

ncbi_submitter: NovoBiotic Pharmaceuticals


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 1836

ncbi_submitter: Ghent University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C0630

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Agathobacter rectalis


ncbi_genome_representation: partial

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Inner Mongolia Medical University


ncbi_organism_name: Leclercia sp.


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: DC

ncbi_isolation_source: Abscess

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: Mouse faeces


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Third Institute of Oceangraphy, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Staphylococcus sp. HMSC10B09

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: URMITE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Canada: Brigham; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Comamonas sp. B21-038

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Canada

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacteriaceae bacterium VN002

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Hydrogenobacter thermophilus

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Bilophila sp.


ncbi_organism_name: Telluribacter sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lactobacillus hominis


ncbi_country: China: Sichuan

ncbi_isolation_source: fermented grains of Baijiu

ncbi_organism_name: Cohnella sp. REN36

ncbi_submitter: student


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_assembly_name: Escherichia coli CVM N36204PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N36204PS

ncbi_submitter: FDA


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Frankineae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Klebsiella aerogenes


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Galway


ncbi_organism_name: Brevundimonas vesicularis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Gdansk University of Technology


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Thermomonas haemolytica

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Streptomyces sp. NBC_01498

ncbi_submitter: Technical University of Denmark


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Roseibacillus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jena University Hospital


ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides clarus

ncbi_submitter: EMG


ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Alteraurantiacibacter sp.

ncbi_submitter: Rutgers University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;x__unclassified Candidatus Acidulodesulfobacterales;s__Candidatus Acidulodesulfobacterales bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Germany

ncbi_organism_name: Paenibacillus sp. GM1FR

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: China: Jilin

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_assembly_name: Rumen uncultured genome RUG14749

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China:Hong Kong

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Hafnia alvei ATCC 51873

ncbi_submitter: Washington University Genome Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Hafniaceae;g__Hafnia;s__Hafnia alvei;x__Hafnia alvei ATCC 51873


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Balneicella halophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: OH

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG13694

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Leptotrichiaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Brazil: Santos

ncbi_isolation_source: brown mussels (Perna perna)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMT1-62

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_isolation_source: feces

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Atlantic Ocean

ncbi_isolation_source: skin

ncbi_organism_name: Pseudoalteromonas sp. APC 3893

ncbi_submitter: University College Cork


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_submitter: sichuan university


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Malaysia: Sabah

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Biotechnology Research Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus MISS6080

ncbi_submitter: Broad Institute


ncbi_country: Mexico

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Lloydiibacteriota;s__Candidatus Lloydbacteria bacterium CG22_combo_CG10-13_8_21_14_all_47_15


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: carcass

ncbi_submitter: Yangzhou University


ncbi_country: Bangladesh

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: icddrb


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Campylobacter sp. RM12637

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Eisenbergiella sp.

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: USA: La Jolla; CA

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinomonas sp. SBI8L

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Segatella copri


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014-D6_bin-626

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: Commercial Mycovac-L vaccine

ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre pasteur du Cameroun


ncbi_isolation_source: marine metagenome


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Jiulongibacter sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: USA

ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus peoriae

ncbi_submitter: Cornell University


ncbi_country: South Africa

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Zoonosis Science Center


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Stutzerimonas balearica

ncbi_submitter: University of Thessaly


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parolsenella sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Nocardia iowensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Limihabitans stercoravium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limihabitans;s__Candidatus Limihabitans stercoravium


ncbi_organism_name: Corynebacterium falsenii

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: EPFL


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: SC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: AIMST University


ncbi_organism_name: Acinetobacter tjernbergiae

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: Distal colon

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Auckland


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Massey University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_submitter: Aalborg University


ncbi_organism_name: Nevskia sp.


ncbi_assembly_name: Rumen uncultured genome RUG14408

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Verrucomicrobia bacterium UBA1727

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1727


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_submitter: The University of Hong Kong


ncbi_country: Taiwan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Shanghai Jiaotong University school of medicin


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Australia: near Lamington National Park; Queensland

ncbi_isolation_source: termite gut

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_assembly_name: Rumen uncultured genome RUG835

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: Vershire; Ely Copper Mine

ncbi_isolation_source: water

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Fujian; Longyan; Zijin gold and copper mine

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. Au-Mic1

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5051

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Spain: Madrid

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario La Paz


ncbi_country: Spain: Rapita

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Australia: Melbourne

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Monash University


ncbi_country: Romania: Cekend

ncbi_isolation_source: landfill leachate-treating activated sludge bioreactor

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: ELTE Eotvos Lorand University


ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium intracellulare

ncbi_strain_identifiers: ABSURDO Component C

ncbi_submitter: Bard College


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Niabella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Candidatus Flexifilum breve

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Aggregatilineales;f__Candidatus Flexifilaceae;g__Candidatus Flexifilum;s__Candidatus Flexifilum breve


ncbi_country: USA: North Carolina; Durham County

ncbi_isolate: LPT

ncbi_isolation_source: whole lichen thallus containing the lichenizing fungus Leptogium austroamericanum; the cyanobacterial photobiont; and possibly endolichenic fungi and prokaryotes

ncbi_organism_name: Nostoc sp. LPT

ncbi_strain_identifiers: LPT

ncbi_submitter: Duke University


ncbi_country: India: Andhra Pradesh

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. RP6

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: 2437 assembly

ncbi_submitter: inrae nouzilly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_country: Thailand

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Peru: Calca; Cuzco

ncbi_isolation_source: clinical specimen; blood

ncbi_organism_name: Bartonella bacilliformis Peru38

ncbi_submitter: Broad Institute


ncbi_country: USA: San Diego

ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: University of California, San Diego


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Bacillus cereus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_assembly_name: freshwater MAG --- Ki2-D4_bin-0692

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Denmark

ncbi_isolation_source: oral cavity

ncbi_organism_name: Otariodibacter oris

ncbi_submitter: University of Copenhagen


ncbi_country: Australia: VIC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0128


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Eawag


ncbi_isolate: Rodriguez-Navarro A4-1

ncbi_isolation_source: Beehive

ncbi_organism_name: Bombella apis

ncbi_strain_identifiers: Rodriguez-Navarro A4-1;LMG 1352

ncbi_submitter: Ghent University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Zunongwangia profunda

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mangrovimonas yunxiaonensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Catenibacterium sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Salmonella sp. NW174

ncbi_submitter: Sichuan University


ncbi_organism_name: Aeromonas veronii bv. sobria

ncbi_submitter: Hellenic Centre for Marine Research


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Lishizhenia sp.


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Schlesneria sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sam Houston State University


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Morganella morganii

ncbi_submitter: National Chung Cheng University


ncbi_isolate: Clinical

ncbi_isolation_source: Cough swab

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: passage 100 in MRS medium of strain P-8

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Enhydrobacter sp.

ncbi_submitter: NIH/NHGRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;x__Hyphomicrobiales incertae sedis;g__Enhydrobacter;x__environmental samples;s__uncultured Enhydrobacter sp.


ncbi_country: Switzerland: Le Moleson region; Fribourg

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0236

ncbi_submitter: University of Lausanne


ncbi_country: Lebanon

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: China: Henan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Argentina: Victoria

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: woad vat

ncbi_organism_name: Clostridium isatidis

ncbi_submitter: University of Nottingham


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Florida

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_isolation_source: ileum

ncbi_organism_name: Limosilactobacillus ingluviei

ncbi_submitter: Quadram Institutte


ncbi_assembly_name: Rumen uncultured genome RUG11463

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. SCUT-3

ncbi_submitter: South China University of Technology


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Veblenbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vebleniibacteriota;x__unclassified Candidatus Veblenbacteria;s__Candidatus Veblenbacteria bacterium


ncbi_country: Italy: South Tyrol; Alps

ncbi_organism_name: Solimicrobium silvestre

ncbi_submitter: Biocant


ncbi_organism_name: Gudongella sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Novosphingobium endophyticum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: CA

ncbi_isolation_source: onion

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS3002

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Klebsiella sp. CIP107

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22811;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Puerto Rico: Guajataca Forest

ncbi_isolation_source: bromeliad phytotelma

ncbi_organism_name: Rhodopseudomonas sp. BR0G17

ncbi_submitter: University of Puerto Rico at Mayaguez


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: college of veterinary medicine


ncbi_organism_name: uncultured Carboxylicivirga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Ohio

ncbi_isolation_source: Sewage

ncbi_organism_name: Enterobacter sichuanensis

ncbi_submitter: Ohio State University


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter sp. JH536

ncbi_submitter: Jinhua Central Hospital


ncbi_country: USA: Pittsburgh; Pennsylvania Magee Womens Hospital

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Banfield Lab


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_submitter: The University of Texas at San Antonio


ncbi_country: Japan

ncbi_organism_name: Raoultella planticola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: South Africa: Lokaleng Village; Mahikeng

ncbi_isolation_source: fecal sample from diarrhoea affected cattle B

ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: North-west University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Candidatus Alistipes avistercoris

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: foodborne patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Osaka Institute of Public Health


ncbi_organism_name: Dietzia maris

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: ETH Zurich, DBSSE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany

ncbi_organism_name: Nocardiopsis composta

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Nocardia iowensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Streptococcus sp. HMSC070A10

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: The University of Melbourne


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Oral cavity

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Sweden

ncbi_organism_name: Clostridium botulinum C str. Stockholm

ncbi_strain_identifiers: Stockholm

ncbi_submitter: National Veterinary Institute (SVA), Sweden

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum C;x__Clostridium botulinum C str. Stockholm


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU1 evolved under selective conditions; LB evolved gen 500 Population GS

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: RU1 LB7

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_isolation_source: intestine

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Milk

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter pittii

ncbi_strain_identifiers: FDAARGOS 1397

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_submitter: Christian Medical College


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolate: SPRUCE 479

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 479

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Brevibacillus sp. NPDC003359

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: AB PRISMA


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Sediminibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Streptomyces rochei


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: DS-I Africa


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_country: USA: Midwest

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: University of Chicago


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: mine service water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: uncultured Desulfobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120497


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Palmer LTER


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Baekdu Mountain

ncbi_isolation_source: soil

ncbi_organism_name: Ramlibacter ginsenosidimutans

ncbi_submitter: Dongguk University


ncbi_organism_name: Sporosarcina ureae


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: secretion

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: Stomach

ncbi_organism_name: Helicobacter enhydrae

ncbi_submitter: MIT


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 158

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: India: Gulf of Kutch

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Candidatus Neomicrothrix subdominans

ncbi_submitter: Aalborg University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Shenzhen

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Enterocloster lavalensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Paenibacillus sp. FSL R5-0744

ncbi_submitter: Penn State


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Aestuariivirgaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand

ncbi_isolation_source: animal

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Srinakharinwirot university


ncbi_isolation_source: chicken breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CVM_N202


ncbi_isolation_source: aquaculture pond

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jiangnan University


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Thermoguttaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Anhui

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFCSPHIGHO2_01_FULL_40_23


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_country: Nigeria

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Italy: Sardinia

ncbi_organism_name: Leptospira sp. id769339

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Sardegna


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: SC


ncbi_submitter: Chongqing Medical University


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Endotracheal aspirate

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: China: South China Sea

ncbi_isolation_source: sediments

ncbi_organism_name: Bacillus albus

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_country: Germany: Eilenburg

ncbi_isolation_source: active sludge of wastewater treatment plant

ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Helmholtz Center for Environmental Research -UFZ


ncbi_country: USA: Delaware

ncbi_isolation_source: laboratory

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: BW25113 frmA KO wo pUD9

ncbi_submitter: University of Delaware


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: grass shoots

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinobacterium sp. xm-d-579

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: France

ncbi_isolation_source: urine sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MAL

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Texas

ncbi_organism_name: Acidovorax soli

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Pleural effusion

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWD1_31_12


ncbi_country: China: Liaoning

ncbi_isolation_source: sputum

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Kangwon National University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Balneolaceae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__environmental samples;s__uncultured Balneolaceae bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Legionella sp.

ncbi_submitter: University of Florida


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_organism_name: Bartonella sp. MR63HLJHH

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Nanning

ncbi_isolation_source: food

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: soil metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: UIUC


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bordetella pertussis H973

ncbi_submitter: JCVI


ncbi_country: Australia

ncbi_isolation_source: Shiraz

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Germany

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T59607

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Sacramento County; Citrus Heights

ncbi_isolation_source: Living room air

ncbi_organism_name: Hymenobacter sp. HSC-4F20

ncbi_submitter: Sierra College


ncbi_country: China

ncbi_submitter: China Aricultural University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_isolation_source: Complejo Hospitalario de Pontevedra (Pontevedra)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France: paris

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Institut Pasteur


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pimelobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Desulfobacterales bacterium


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces sp. NPDC048255

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: France: Caen

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus hirae


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient8 sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shenzhen People Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Escherichia coli N40513

ncbi_submitter: FDA


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Indiana

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. INML5

ncbi_submitter: Emory University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Bacteriology Microbiology, Osaka Institute of Public Health


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M49691

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Black Sea sulfidic water cellulose enrichment

ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: Royal Netherlands Institute for Sea Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Umea University


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Qujing Normal University


ncbi_country: Panama: Bastimentos

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: terrestrial

ncbi_organism_name: Kosmotogaceae bacterium


ncbi_country: Germany: Dusseldorf

ncbi_isolation_source: Tap water

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: LNCC


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: Soil from a ginseng field

ncbi_organism_name: Pseudoxanthomonas koreensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Bradyrhizobium sp. SZCCHNS30121

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_isolation_source: feces from veal calf

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: International Space Station

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NPDC091283

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: India

ncbi_isolation_source: placenta

ncbi_organism_name: Brucella abortus

ncbi_submitter: SDAU


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium GW2011_GWB1_39_5


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EBI


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Ardenticatenia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptomyces sp. NPDC002458


ncbi_country: Sweden

ncbi_isolation_source: abscess

ncbi_organism_name: Mycobacterium tuberculosis BTB09-230

ncbi_submitter: Broad Institute


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: University of Malaya


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Blautia sp.


ncbi_isolate: Nostoc CCY 9925

ncbi_organism_name: Nostoc sp. CCY 9925

ncbi_strain_identifiers: Nostoc CCY 9925

ncbi_submitter: royal netherlands institute for sea research (nioz)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. CCY 9925


ncbi_organism_name: uncultured Bradymonadales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Bradymonadales;x__environmental samples;s__uncultured Bradymonadales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter lari

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_submitter: Shanghai Hongkou District Center for Disease Control and Prevention


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Collinsella sp.


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Enterobacter sp. SGAir0187

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_submitter: Cepheid


ncbi_organism_name: Bacillus subtilis subsp. natto

ncbi_strain_identifiers: BGSC 27E1

ncbi_submitter: Lawrence Berkeley National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: unknown


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LHUB-ULB


ncbi_country: China

ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: EMG


ncbi_country: China: Hong Kong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Novosphingobium sp. UBA6272


ncbi_isolation_source: drainage fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_isolation_source: stool of 63 year old male

ncbi_organism_name: Vibrio furnissii

ncbi_submitter: Zhongshan People's City Hospital


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_isolation_source: secretions

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient A

ncbi_organism_name: Achromobacter xylosoxidans


ncbi_country: Japan: Wakayama Prefecture

ncbi_isolation_source: blood sample

ncbi_organism_name: Bartonella sp. JB15

ncbi_submitter: University of Basel


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Brazil: Anavilhanas; AM

ncbi_isolation_source: Apterostigma fungus garden

ncbi_organism_name: Burkholderia sp. Ap-962

ncbi_submitter: UW-Madison


ncbi_organism_name: Flavobacterium hydatis

ncbi_submitter: Universite Laval


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Ensifer sp. OTU672

ncbi_submitter: The University of Chicago


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: Texas A&M University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 320

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: SNUC 3379

ncbi_submitter: University of Calgary


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: New Zealand: South Canterbury

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Thailand

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcaceae bacterium UBA2831

ncbi_submitter: University of Queensland


ncbi_country: Hungary: Dunatetetlen

ncbi_isolation_source: Sos-er soda pan; water

ncbi_organism_name: Belliella filtrata

ncbi_submitter: Centre for Ecological Research, Institute of Aquatic Ecology


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: University of Michigan


ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Italy: Venice; Rio di S. Giacomo

ncbi_isolation_source: anaerobic marine mud samples

ncbi_organism_name: Desulfobacter hydrogenophilus

ncbi_submitter: Harvard University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Lutimonas sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: IMG-taxon 2671180024 annotated assembly

ncbi_organism_name: Ornithinimicrobium cerasi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: China: Henan

ncbi_organism_name: Stenotrophomonas nematodicola

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: Exilibacterium sp.

ncbi_submitter: Georgia Tech


ncbi_country: China: Hong Yuan

ncbi_organism_name: Microbispora sp. H10885

ncbi_submitter: Sichuan Industrial Institute of Anotibioctics


ncbi_country: USA: WA

ncbi_isolation_source: ARMADA Isolate

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Caulobacteraceae bacterium UBA3198

ncbi_submitter: University of Queensland