ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Germany

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: Quadram Institutte


gtdb_representative: f

ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptodolium elevatio

ncbi_refseq_category: reference genome

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangzhou

ncbi_isolation_source: nasal swabs

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptomyces rochei


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus UCIM6009

ncbi_submitter: Broad Institute


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium transplantifaecale

ncbi_submitter: URMITE

ncbi_type_material_designation: assembly from type material


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lactiplantibacillus sp. DA1

ncbi_submitter: Ming Chuan University


ncbi_country: Colombia

ncbi_isolation_source: Tissues

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: pharynx

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centre for genomic regulation (CRG)


ncbi_organism_name: Pseudomonas aeruginosa BWH053


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli

ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: EMG


ncbi_country: Brazil: Bom Jesus dos Perdoes

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Instituto Agronomico - IAC - Campinas - SP - Brasil


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Citrobacter sp. FDAARGOS_156

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: Palmer LTER


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: SOAPdenovo v1.06

ncbi_isolation_source: hypersaline soil

ncbi_organism_name: Nocardiopsis gilva YIM 90087

ncbi_submitter: Yunnan Institute of Microbiology, Yunnan University


ncbi_isolation_source: human feces metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Megasphaera elsdenii


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptomyces massasporeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Segatella hominis


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Leptotrichia wadei

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces canus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Cellvibrio sp. ARAG 10.3

ncbi_strain_identifiers: ARAG 10.3

ncbi_submitter: Food Industries Research Institute


ncbi_organism_name: uncultured Gallionella sp.


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


gtdb_type_species_of_genus: t

ncbi_organism_name: Kushneria aurantia

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Kasetsart University Chalermphrakiat Sakon Nakhon Province Campus


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Streptomyces chartreusis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: uncultured Lentisphaeraceae bacterium


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: Novosphingobium sp. NPDC080210


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Streptomyces sp. NPDC058834


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_65_9


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Dialister invisus


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Clostridium sp. SHJSY1

ncbi_submitter: Shandong University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_assembly_name: freshwater MAG --- MJ110516B_bin-0228

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture


ncbi_country: Nigeria: Ogun

ncbi_isolation_source: Ready-to-eat food

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Neisseria lactamica


ncbi_organism_name: Dickeya dadantii

ncbi_submitter: Cornell University


ncbi_organism_name: Streptomyces sp. NPDC041068

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: coronal/gingival

ncbi_organism_name: Capnocytophaga sp. oral taxon 864

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;x__unclassified Capnocytophaga;s__Capnocytophaga sp. oral taxon 864


ncbi_country: Japan:Hokkaido; Sapporo city

ncbi_submitter: Zoonoses, School of Veterinary Medicine, Kitasato University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_country: Bangladesh

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Hohenheim


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: China: Yunnan

ncbi_isolation_source: hot spring

ncbi_organism_name: Thermus tengchongensis

ncbi_submitter: China University of Geosciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pigeon pea little leaf phytoplasma

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__unclassified Candidatus Phytoplasma;s__Pigeon pea little leaf phytoplasma


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Seattle

ncbi_isolation_source: cause of peritonitis

ncbi_organism_name: Mycolicibacterium mucogenicum DSM 44124

ncbi_submitter: Uppsala University


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Pandoraea sp. 64-18

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Arcobacter cryaerophilus gv. pseudocryaerophilus

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Kenya

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacteriaceae bacterium NR044

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23000;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: groundwater

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: USA: MA; Boston

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Broad Institute


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Zhaoqing

ncbi_isolation_source: deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Center for Disease Control and Prevention of zhaoqing


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Loc090907-8-6m_bin-156

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The REHAB Consortium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_organism_name: Microbacterium sp. NPDC055988

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_organism_name: Chryseobacterium taichungense


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 81-2625


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_assembly_name: freshwater MAG --- UppL5_bin-2002

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Symbiobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: Peadiatric - bp apparatus

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio chagasii

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Nocardioides kribbensis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces sp. G-G2

ncbi_submitter: Yildiz Technical University


ncbi_country: Cambodia

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Belgium

ncbi_isolation_source: Dried mushrooms

ncbi_organism_name: Clostridium sp. CH2

ncbi_submitter: KULeuven


ncbi_assembly_name: freshwater MAG --- Umea_bin-05401

ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: BILS


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Lebanon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_assembly_name: IMG-taxon 2634166303 annotated assembly

ncbi_organism_name: Arenibacter palladensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Costa Rica: San Jose

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Labilithrix sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Vibrio sp. CJQ_6

ncbi_submitter: WenZhou Medical University


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Armatimonadota bacterium


ncbi_submitter: Lunds Universitet


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: India

ncbi_isolation_source: Turmeric powder

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: crab grass

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Ruminococcaceae bacterium UBA3215


ncbi_organism_name: Tissierella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. H021

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas sp. FSL R10-0399

ncbi_submitter: Cornell University


ncbi_country: Italy: Lake Candia

ncbi_isolation_source: freshwater

ncbi_organism_name: Vulcanococcus limneticus Candia 3B3

ncbi_strain_identifiers: Candia 3B3

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Kingella kingae KK171

ncbi_submitter: URMITE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Nasophaynx


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Mulei; Xinjiang

ncbi_organism_name: Mesorhizobium muleiense

ncbi_submitter: Zhengzhou University of light industry


ncbi_country: Argentina: Cordoba

ncbi_isolation_source: Abomasal fluid foetus

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis bv. intermedius;x__Campylobacter fetus subsp. venerealis cfvi9825


ncbi_isolation_source: Stool

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_organism_name: Pedobacter antarcticus

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Selenomonas sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Australia: Perth

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Brazil: Sao Jose da Bela Vista

ncbi_isolation_source: water

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kiel University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Germany

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Tuebingen


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Pietermaritzburg

ncbi_isolation_source: Rectum

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020047925

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces sp. NPDC060085

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Porphyromonas catoniae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Universite de Caen Normandie


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Pacific Ocean: Near Hawaii

ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Listeria innocua

ncbi_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Qingdao Agriculture University


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Universidad Nacional de Villa Maria


ncbi_organism_name: Pseudomonas rossensis

ncbi_submitter: Masaryk University


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0776

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus asini ATCC 700915

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus asini;x__Enterococcus asini ATCC 700915


ncbi_country: Brazil:Sao Paulo; Sao Jose do Rio Preto

ncbi_isolation_source: blood

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Aarhus University


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 1

ncbi_submitter: Lebanese American University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: BIFSCo Region 5

ncbi_isolation_source: Swine Preevisceration Carcass Swab

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brandenburg


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum


ncbi_organism_name: Candidatus Pelethomonas sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Pelethomonas;x__unclassified Candidatus Pelethomonas;s__Candidatus Pelethomonas sp.


ncbi_country: Italy

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Blautia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella sp. NW1080

ncbi_submitter: Sichuan University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: Ground Water

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neglectibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: USA: MN

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: skin

ncbi_organism_name: Citricoccus massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Glutamicibacter sp. Je.9.36

ncbi_submitter: Center of Biotechnology of Borj Cedria


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli E851/71

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG12117

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermovirga sp.

ncbi_submitter: The Ohio State University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Microbacterium sp. NPDC090281

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces celluloflavus


ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: North Carolina State University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Oxalobacteraceae bacterium


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Hydrothermia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Hydrothermota;c__Candidatus Hydrothermia;x__unclassified Candidatus Hydrothermia;s__Candidatus Hydrothermia bacterium


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: Mycobacterium sp. HOS52

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Pantoea septica

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Draft genome of Kocuria varians G6

ncbi_isolate: Kocuria varians

ncbi_isolation_source: Meat Chopper / Grinder in a Danish Slaughterhouse

ncbi_organism_name: Kocuria varians

ncbi_strain_identifiers: Kocuria varians;G6

ncbi_submitter: Universitetsparken 15


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shinella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: USA: Iowa

ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: University of Iowa


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf407

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Sweden

ncbi_isolation_source: prostatic tissue

ncbi_organism_name: Cutibacterium acnes subsp. defendens

ncbi_submitter: Aarhus University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria sp. HMSC078C12

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Manitoba


ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Aquatic

ncbi_submitter: GCAT-SEEK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium aquatile;x__Flavobacterium aquatile LMG 4008 = ATCC 11947


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: USA

ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: SD

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Rhodohalobacter sp. 8-1

ncbi_submitter: Ningbo University


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0045

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Joint Microbiome Facility


ncbi_country: USA: Texas; Corpus Christi

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Blautia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_country: China

ncbi_isolation_source: anaerobic digsetion effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Wenzhou

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Italy: Naturno (BZ)

ncbi_isolation_source: liver

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Switzerland

ncbi_isolation_source: Environment water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Inserm


ncbi_isolation_source: burned soil

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Gallionella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: California; Modesto

ncbi_organism_name: Elusimicrobiota bacterium


ncbi_country: China: Shanghai

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: EMG


ncbi_submitter: China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ghana: Northern region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_isolation_source: wound

ncbi_organism_name: Shewanella algae

ncbi_submitter: Karolinska Institutet


ncbi_country: Canada: Alberta

ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_isolation_source: Soil

ncbi_organism_name: Massilia sp. WG5

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Devosia sp. MC1541

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coriobacteriaceae bacterium LG101-28

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Hungatella hathewayi


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Yonsei University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Baildon


ncbi_isolation_source: caecum

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Veterinary Research Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_submitter: University of Trento


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 24 days

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shantou University


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: United Kingdom: Scottish west coast; north of Oban

ncbi_isolation_source: Sea loch water

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: The Roslin Institute, University of Edinburgh


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Broad Institute


ncbi_country: Portugal

ncbi_isolation_source: health products

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Peru:Santa Cruz

ncbi_organism_name: Yersinia pestis PY-13

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Granulicella sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Candidatus Fimadaptatus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimadaptatus;x__unclassified Candidatus Fimadaptatus;s__Candidatus Fimadaptatus sp.


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: MAMI


ncbi_organism_name: Enterobacter sp. MGH 38

ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 38


ncbi_organism_name: Streptomyces cinnamoneus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Aphanothece stagnina RSMan2012

ncbi_submitter: Federal University of Rio Grande


ncbi_organism_name: Hydrogenophaga intermedia

ncbi_submitter: Biology Centre CAS


ncbi_assembly_name: Rumen uncultured genome RUG14933

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Nigerium sp.


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Technical University of Denmark


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Chloroflexota bacterium


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-01

ncbi_submitter: Rothamsted Research


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae


ncbi_country: China: Beihai

ncbi_organism_name: Mangrovimonas sp. YM274

ncbi_submitter: Fourth Institute of Oceanography, Ministry of natural resources


ncbi_country: South Korea: Jeollanam-do

ncbi_isolation_source: soil

ncbi_organism_name: Sphingomonas sp. NIBR02145

ncbi_submitter: eGnome Inc.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_country: Guinea-Bissau

ncbi_submitter: FDA/CFSAN


ncbi_country: Ecuador

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_submitter: University of Debrecen


ncbi_country: Brazil: Rio Grande do Sul;Porto Alegre

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa swab

ncbi_organism_name: Dietzia cinnamea

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Brazil: Minas Gerais; Furnas Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Region de Aysen

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Otago


ncbi_country: Brazil

ncbi_isolation_source: isolated from a wheat field in the South of Brazil

ncbi_organism_name: Paenibacillus riograndensis SBR5

ncbi_submitter: UFRGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;x__Paenibacillus sonchi group;s__Paenibacillus riograndensis;x__Paenibacillus riograndensis SBR5


ncbi_country: USA: Damariscotta River in front of the Bigelow Laboratory for Ocean Sciences

ncbi_isolation_source: four week timepoint of microcosm treated with crude oil after inoculation with natural surface seawater; biological replicate 2

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: binding flour

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: TIFN


ncbi_country: Taiwan

ncbi_isolation_source: homogenized honeybee

ncbi_organism_name: Spiroplasma melliferum IPMB4A

ncbi_submitter: Academia Sinica


ncbi_country: South Korea: Yeosu

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Alishewanella aestuarii B11

ncbi_submitter: Korea University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Argentina

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: spleen

ncbi_organism_name: Aeromonas media

ncbi_submitter: University of Connecticut Graf Lab


ncbi_isolation_source: Sediment

ncbi_organism_name: Candidatus Guanabacterium sedimentis

ncbi_submitter: UFRJ

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__;o__Candidatus Guanabacteria;f__;g__Candidatus Guanabacterium;s__Candidatus Guanabacterium sedimentis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__Acidobacteriota incertae sedis;o__Candidatus Guanabacteria;g__Candidatus Guanabacterium;s__Candidatus Guanabacterium sedimentis


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridia bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Svalbard: Arctic

ncbi_isolation_source: Sediment sample of Kongsfizorden; Arctic

ncbi_organism_name: Marinobacter sp. AC-23

ncbi_submitter: Agharkar Research Institute


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil

ncbi_organism_name: Edaphocola aurantiacus


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: UCB-1 pistachio rootstock

ncbi_organism_name: Rhodococcus sp. PBTS 1

ncbi_strain_identifiers: PBTS 1

ncbi_submitter: New Mexico State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. PBTS 1


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual T

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aeriscardovia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Actinomyces massiliensis

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: marine

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: University of Queensland


ncbi_country: China:Ningxia Hui Autonomous Region

ncbi_isolation_source: Lycium barbarum rhizosphere soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Shandong Agricultural University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: CDC


ncbi_country: South Korea

ncbi_isolation_source: fresh water pond

ncbi_organism_name: Piscinibacter aquaticus

ncbi_submitter: CHUNG ANG UNIVERSITY


ncbi_country: Slovenia

ncbi_isolation_source: Risotto with shrimps

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonas entomophila L48

ncbi_submitter: Genoscope


ncbi_organism_name: Pigmentiphaga soli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Hunan

ncbi_isolation_source: Hunan smoked pork

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Karolinska Institutet


ncbi_country: Malaysia: North Selangor

ncbi_isolation_source: Peat

ncbi_organism_name: Dyella sp. C9

ncbi_submitter: Monash University Malaysia


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Emergencia sp.

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SCH


ncbi_organism_name: Blautia wexlerae


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Darwinimomas equi

ncbi_submitter: Quadram Institute


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Leuconostoc inhae

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Inconstantimicrobium porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: China: Shandong

ncbi_organism_name: Providencia sp. M-27

ncbi_submitter: China Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Paucilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with normal maize

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Glutamicibacter creatinolyticus

ncbi_submitter: Federal Research Center for Fundamental and Translational Medicine


ncbi_organism_name: Streptomyces sp. NPDC059743

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWC2_44_9


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_country: France

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: India: Joginder Nagar; Himachal Pradesh

ncbi_isolation_source: Gastrointestinal tract of fish

ncbi_organism_name: Craterilacuibacter sp. RT1T

ncbi_submitter: National Agri-Food Biotechnology Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Persephonella sp.

ncbi_submitter: Portland State University


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium gordonae

ncbi_submitter: JCVI


ncbi_country: India: Mumbai

ncbi_isolation_source: Sea water

ncbi_organism_name: Nocardiopsis dassonvillei

ncbi_strain_identifiers: NCIM 5124

ncbi_submitter: Savitribai Phule Pune University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Prof. Bart Currie, Menzies School of Health Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Poland: Olecko

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Medicines Institute


ncbi_country: Panama: Gamboa

ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter sp. C26G

ncbi_submitter: UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO-CCG


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: wastewater

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_assembly_name: Salmonella enterica CVM N45926 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: Antarctica: Livingston island

ncbi_organism_name: Pseudarthrobacter sp. AL07

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_country: China: Ningxia; Yinchuan

ncbi_isolation_source: blood

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: terrestrial

ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0046

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NWAFU


ncbi_organism_name: Aggregatibacter segnis


ncbi_country: Norway

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: root

ncbi_organism_name: Micromonospora sp. AP08

ncbi_submitter: Faculty of Pharmaceutical Sciences, Chulalongkorn University


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Roseburia faecis


ncbi_country: Australia: Melbourne

ncbi_isolation_source: seeds

ncbi_organism_name: Curtobacterium sp. GC_Cur_1

ncbi_submitter: Agriculture Victoria


ncbi_country: Portugal: Praia de Lavadores; Canidelo

ncbi_isolation_source: tide pool; rock surface scraping

ncbi_organism_name: Lusitaniella coriacea LEGE 07157

ncbi_submitter: CIIMAR


ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Fish

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: P10 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Yantai University


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Pseudarthrobacter sp. J75

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Monash University


ncbi_country: Thailand: Gulf of Thailand; Bangpoo; Samut Prakan

ncbi_isolation_source: Aquatic bird feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Faculty of Science, Chulalongkorn University


ncbi_country: USA: Nashville; TN

ncbi_isolation_source: Breast meat

ncbi_submitter: Broad Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: Murdochiella vaginalis

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College and Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces salinarius

ncbi_submitter: Shool of Life Science


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0071


ncbi_assembly_name: freshwater MAG --- MJ130729A_bin-110

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Eubacterium ventriosum


ncbi_isolation_source: symptomatic inner bark

ncbi_organism_name: Brenneria goodwinii

ncbi_submitter: University of the West of England


ncbi_assembly_name: Burkholderia  cenocepacia BCC0523

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_assembly_name: Rumen uncultured genome RUG13061

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Chromulinivoraceae bacterium

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;x__unclassified Candidatus Chromulinivoraceae;s__Candidatus Chromulinivoraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP42_A1_surf _bin _11

ncbi_organism_name: Marinobacter sp.

ncbi_strain_identifiers: AOP42_A1_surf _bin _11

ncbi_submitter: Genoscope


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: rectal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Federal University of Rio Grande do Sul


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Sweden

ncbi_isolation_source: UTI

ncbi_submitter: Uppsala University


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human skin

ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: USA: California

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR31381

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: IMG-taxon 2675903152 annotated assembly

ncbi_organism_name: Paracoccus isoporae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Pseudomonas mosselii

ncbi_submitter: Guangxi University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Botucatu

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1791


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhodopirellula sp. SM50

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: uncultured Dorea sp.


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Davis; CA

ncbi_isolation_source: olive fermentation

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: UC Davis


ncbi_organism_name: Campylobacter sp. BCW_4322

ncbi_submitter: University of California at Davis


ncbi_submitter: China Agricultural University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_country: Germany: Thuringia

ncbi_organism_name: Aliarcobacter cibarius

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Czech Republic

ncbi_isolation_source: Milk

ncbi_organism_name: Alloscardovia macacae

ncbi_submitter: University of Parma


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_submitter: South China Agricultural University


ncbi_country: Australia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Viet Nam: Ho Chi Minh

ncbi_submitter: Pasteur Institute in Ho Chi Minh City


ncbi_country: China: zhejiang

ncbi_isolation_source: Child feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hospital


ncbi_assembly_name: Rumen uncultured genome RUG10560

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridium sp. CAG:524

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: EMG


ncbi_country: USA: St. Louis; Missori

ncbi_submitter: Washington University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: New York City

ncbi_isolation_source: newborn nursery

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Columbia University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF16-29

ncbi_submitter: BGI


ncbi_country: USA: North Carolina

ncbi_submitter: JCVI


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_organism_name: Bacteroides uniformis


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Paenibacillus sp. W2I17

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Propionibacterium freudenreichii


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: North-West University


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Enterococcus sp. DIV0207g

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Roseibium sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Aeromonas sp. MdU4

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southampton


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: uncultured Methylobacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kitasatospora sp. NPDC098652

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Drainage

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Egypt: Alexandria

ncbi_submitter: University of East Anglia


ncbi_country: China

ncbi_isolation_source: muscle tissue

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: School of Life Sciences, Xiamen University


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Nigeria

ncbi_submitter: Cepheid


ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA5481

ncbi_submitter: University of Queensland


ncbi_country: New Zealand

ncbi_isolation_source: plant

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: University Claude Bernard Lyon 1

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Roizmanbacteria bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;x__unclassified Candidatus Roizmanbacteria;s__Candidatus Roizmanbacteria bacterium


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU