ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: USDA-ARS-USMARC


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Pseudoalteromonas sp.

ncbi_submitter: Tang lab


ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_level: Scaffold

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Aphanothece cf. minutissima CCALA 015

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


gtdb_representative: t

ncbi_organism_name: Xanthobacter flavus

ncbi_refseq_category: reference genome

ncbi_submitter: AIST

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia sp. AU33545


ncbi_organism_name: Smithella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Mailhella sp.


gtdb_type_species_of_genus: t

ncbi_country: Japan: Niigata

ncbi_isolation_source: paddy field soil

ncbi_organism_name: Geomonas oryzae

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Bacillus sp. B8(2022)

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B8(2022)


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA102

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA102

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mogibacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Anaerolineaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Rhizobium sp. BK289

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: pus

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: intact colon fecal sample

ncbi_strain_identifiers: MFS 4

ncbi_submitter: USDA


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Phytobacter diazotrophicus


ncbi_country: Venezuela

ncbi_isolation_source: Post surgical secretion

ncbi_organism_name: Staphylococcus aureus DAR5861

ncbi_submitter: Broad Institute


ncbi_country: China: Shanghai

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: Low level radioactive waste repository experiment

ncbi_organism_name: Paenibacillus taichungensis

ncbi_submitter: VTT Technical Research Centre of Finland


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Tannerella forsythia

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Portugal: Porto

ncbi_isolation_source: Intraabdominal infection

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Burkholderia pseudomallei


ncbi_assembly_name: Rumen uncultured genome RUG12882

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Candidatus Colimorpha enterica

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Colimorpha;s__Candidatus Colimorpha enterica


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospinaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum


ncbi_country: Malaysia: Penang

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_organism_name: uncultured Alcanivorax sp.


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0895


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudohongiella nitratireducens

ncbi_submitter: University of Southern California


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Fengtai Region for Disease Control and Prevention, Beijing,China


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_organism_name: Plesiomonas shigelloides 302-73

ncbi_submitter: Centro Nacional de Analisis Genomico


ncbi_isolation_source: human gut

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University of Queensland


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Curtobacterium flaccumfaciens pv. beticola

ncbi_strain_identifiers: ATCC BAA-143

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cornell University


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (1uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual AQ

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolate: SPRUCE 616

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_strain_identifiers: SPRUCE 616

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: fecal samples

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellophilus tesquorum

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Photorhabdus sp. CRCIA-P01

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Dechloromonas aromatica (nom. nud.)

ncbi_submitter: University of Alberta


ncbi_submitter: EMG


ncbi_country: China: Chaka Salt Lake

ncbi_isolation_source: surface water

ncbi_organism_name: Flavobacterium sp. SaA2.13

ncbi_submitter: Zhejiang University


ncbi_country: USA: Palo Alto; California

ncbi_isolation_source: bloodstream

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Stanford Healthcare


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Salicola sp. Rm-C-2C1-2

ncbi_submitter: Macau University of Science and Technology


ncbi_country: China: Zhejiang Province; Ximen Island

ncbi_isolation_source: seawater at sediment depth

ncbi_organism_name: Pseudoalteromonas sp. T1lg76

ncbi_submitter: Zhejiang University of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Germany: Tuebingen

ncbi_isolation_source: root nodules

ncbi_organism_name: Streptomyces sp. AcE210

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Candidatus Ribeiella danica

ncbi_submitter: Aalborg University


ncbi_assembly_name: SpeckC

ncbi_organism_name: Pseudomonas carnis

ncbi_strain_identifiers: Pseudomonas carnis

ncbi_submitter: CEBITEC


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Monash University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Yonsei University


ncbi_country: USA: CA

ncbi_isolation_source: Tap water from hospital sink

ncbi_organism_name: Legionella anisa

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: Long Island University


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_organism_name: Candidatus Ventrisoma faecale

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Ventrisoma;s__Candidatus Ventrisoma faecale

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ventrisoma;s__Candidatus Ventrisoma faecale


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0414

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- LJ_bin-0454

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Paenibacillus larvae subsp. pulvifaciens

ncbi_submitter: CT Agric Expt Station


ncbi_country: USA: PA

ncbi_isolation_source: caecum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: avian liver (Gallus gallus domesticus)


ncbi_country: USA: Hawaii

ncbi_organism_name: Leptospira noguchii str. 2001034031

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Phoenicibacter congonensis

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_assembly_name: IMG-taxon 2595698219 annotated assembly

ncbi_organism_name: Dyadobacter psychrophilus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0810

ncbi_submitter: Broad Institute


ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Bolivia

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Florence


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Changshengia sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Aeolococcales;f__Candidatus Aeolococcaceae;g__Candidatus Changshengia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Aeolococcales;f__Candidatus Aeolococcaceae;g__Candidatus Changshengia;x__unclassified Candidatus Changshengia;s__Candidatus Changshengia sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 1994

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 1994


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_organism_name: Yersinia pestis CMCC91090

ncbi_submitter: Beijing Genomics Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Halanaerobium sp. MA284_MarDTE_T2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Austria: Lower Austria; Krems

ncbi_isolation_source: rectal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolate: VTEC

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Gemella sp. GL1.1

ncbi_submitter: King's College London


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_strain_identifiers: anaerobia AP69FAA

ncbi_submitter: UCSF


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0451R

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Atlantic Ocean

ncbi_isolation_source: pentadecane enrichment inoculated with seawater

ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: University of Califronia


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: thrips from onion leaf

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Pau University


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Devosia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: United Kingdom: Western English Channel

ncbi_isolation_source: Coastal surface water

ncbi_organism_name: Methylophilales bacterium

ncbi_submitter: University of Exeter


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Vircell S.L.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Arenibacter sp. UBA3199

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_country: USA: North Carolina

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. NCF4

ncbi_submitter: Emory University


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter sp.


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Aureispira sp.

ncbi_submitter: Kiel University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Viet Nam: Hoai Duc; Ha Noi

ncbi_isolation_source: root of white egg plant

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: ENDOBICA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: marine metagenome


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Italy: Tuscany; Siena

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Siena


ncbi_country: China: Changchun

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: SLPE

ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: not available: not collected

ncbi_submitter: SC


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolate: Magpie fecal

ncbi_strain_identifiers: Magpie fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_organism_name: Sulfuricellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Boston; MA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae BIDMC 53

ncbi_strain_identifiers: BIDMC 53

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae BIDMC 53


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Formosa sp. S-31

ncbi_submitter: Xiamen University


ncbi_organism_name: Candidatus Saccharimonas sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__unclassified Candidatus Saccharimonas;s__Candidatus Saccharimonas sp.


ncbi_organism_name: Streptomyces achromogenes


ncbi_organism_name: uncultured Flavipsychrobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Collinsella sp. LCP19S3_D5

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_organism_name: Abditibacterium sp.


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Nitrospiraceae bacterium


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Neptuniibacter sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: sea water

ncbi_organism_name: Flavobacteria bacterium MS024-2A

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;x__unclassified Flavobacteriia;s__Flavobacteria bacterium MS024-2A


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter lwoffii

ncbi_strain_identifiers: FDAARGOS 1394

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Lysinibacillus sp.

ncbi_submitter: University of Western Australia


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: LM-UGent


ncbi_country: Spain

ncbi_organism_name: Brucella suis bv. 2

ncbi_submitter: National Institute for Agrarian and Veterinary Research, P.I. & BioFIG - Center for Biodiversity Functional & Integrative Genomics Faculty of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 2


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis F1926

ncbi_submitter: Technical University of Denmark, Department of Systems Biology


ncbi_assembly_name: Escherichia coli CVM N33825PS v1.0

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N33825PS

ncbi_submitter: FDA


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands: Bennekom area

ncbi_isolation_source: rhizosphere of potato

ncbi_organism_name: Ochrobactrum quorumnocens

ncbi_submitter: Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas sp. LS_2

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: brine of stinky tofu

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: School of Biological Engineering


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Balneola sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Actinomyces bovis

ncbi_submitter: SC


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_submitter: China Agricultural University


ncbi_assembly_name: IMG-taxon 2623620514 annotated assembly

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Granulicatella adiacens

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Kingston; ON

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Queen's University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Klebsiella variicola


ncbi_organism_name: Listeria monocytogenes 6179

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_isolation_source: fruit of Malay rose apple

ncbi_organism_name: Acetobacter syzygii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: freshwater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces diastatochromogenes

ncbi_submitter: A*STAR


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Japan

ncbi_isolation_source: Heart

ncbi_organism_name: Streptococcus sp. DAT741

ncbi_submitter: National Institute of Animal Health


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 208

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: SNUC 3829

ncbi_submitter: University of Calgary


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: uncultured Friedmanniella sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium sp. CP2

ncbi_submitter: University of Parma


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_country: India: Himachal Pradesh

ncbi_isolation_source: freshwater; mud

ncbi_organism_name: Rhodomicrobium udaipurense

ncbi_submitter: Washington University in St. Louis


ncbi_country: Nigeria

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Cardiff University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Acidaminococcaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_12_FULL_39_21


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: blood


ncbi_country: USA:Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD964

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Tunisia: Borj Cedria

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: CBBC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Dialister sp.

ncbi_submitter: UIUC


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC058461


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteriovorax sp.


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Burkholderia theae

ncbi_strain_identifiers: XITOU

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Yellow Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Pseudooceanicola sediminis

ncbi_submitter: Qingdao Agricultural University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: clinical

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: Short assembly 1.2

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: Arterial blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Zhejiang

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Malaysia:Kuala Lumpur

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Japan

ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. animalis;x__Bifidobacterium animalis subsp. animalis MCC 0499


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin22

ncbi_isolation_source: soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: LAG bin22

ncbi_submitter: Monash University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Beijing


ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom: Dorset

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: NA 54

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus sp. QN2MO-1

ncbi_submitter: Hainan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. QN2MO-1


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1293

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: drinking water

ncbi_submitter: UW-GEL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Rahnella;s__Rahnella aquatilis;x__Rahnella aquatilis CIP 78.65 = ATCC 33071


ncbi_isolate: isolate

ncbi_isolation_source: Horse

ncbi_organism_name: Brucella pseudintermedia

ncbi_strain_identifiers: isolate

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Russia: Krasnodar Krai; Kuban

ncbi_isolation_source: pheasant; gastrointestinal tract

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Kazan Federal University


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3692

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Bdellovibrionales bacterium Ga0074139

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Bdellovibrionales bacterium Ga0074139

ncbi_submitter: University of Glasgow


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UF Health Jacksonville


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tongji University


ncbi_country: France: Besancon

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Center for Disease Prevention and Control of PLA


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli KTE160

ncbi_submitter: Broad Institute


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 8

ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Arizona State University


ncbi_organism_name: Duganella sp. 3397

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Sri Lanka

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine, University of Colombo


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Mucilaginibacter sp. SG538B


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Marvinbryantia formatexigens DSM 14469

ncbi_submitter: Stanford University


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Pelethocola;s__Candidatus Pelethocola excrementipullorum


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Australia: Perth

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: New Zealand: Christchurch

ncbi_isolation_source: Sputum sample

ncbi_organism_name: Legionella longbeachae

ncbi_submitter: Canterbury Health Laboratories


ncbi_isolation_source: pork salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Israel

ncbi_isolation_source: salt-saturated mud; Israel

ncbi_organism_name: Orenia marismortui DSM 5156

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Halanaerobiales;f__Halobacteroidaceae;g__Orenia;s__Orenia marismortui;x__Orenia marismortui DSM 5156


ncbi_organism_name: Lactococcus garvieae ATCC 49156

ncbi_submitter: Broad Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: [Pasteurella] aerogenes

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM BIA 225

ncbi_submitter: Agroscope


ncbi_organism_name: Staphylococcus argensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Ruzzini Lab


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Actinacidiphila sp. bgisy144

ncbi_submitter: BGI Research


ncbi_country: China: Sichuan Province

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Shanghai JiaoTong University School of Medicine


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: Nebraska

ncbi_isolation_source: aborted fetus

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Turneriella sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia massiliensis (ex Durand et al. 2017)

ncbi_submitter: University of Chicago


ncbi_country: USA: Minnesota

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces katrae

ncbi_submitter: University of Minnesota


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Italy

ncbi_isolation_source: duedonoscope instrument

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Campus Bio-medico of Rome


ncbi_country: Antarctica: Southern Victorialand; McMurdo Dry Valley; Taylor Valley; Lake Fryxell

ncbi_isolation_source: microbial mat

ncbi_organism_name: Phormidium pseudopriestleyi FRX01

ncbi_submitter: University of California Davis


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Brevibacterium casei

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: Gill chamber Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_country: Viet Nam: Tay Ninh

ncbi_isolation_source: throat swab

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_isolation_source: Faeces


ncbi_country: USA: New York City

ncbi_isolation_source: sputum unspecified

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Tianjin

ncbi_isolation_source: oil soil

ncbi_organism_name: Marinobacter sediminum

ncbi_submitter: Tianjin University


ncbi_country: Germany

ncbi_isolation_source: Nasal cavity

ncbi_organism_name: Rodentibacter genomosp. 2

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_organism_name: Pseudomonas amygdali pv. eriobotryae

ncbi_strain_identifiers: ICMP 4455

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. eriobotryae


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: RARI


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_country: Sweden: Baltic Sea

ncbi_isolation_source: Coastal surface seawater

ncbi_organism_name: Pseudomonas sp. CBS

ncbi_strain_identifiers: CBS

ncbi_submitter: Umea university


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Tissue Right Shoulder GLENOID MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Brucella anthropi

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWD1_42_14


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Alistipes sp. CAG:29

ncbi_submitter: DTU


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: mouse gut metagenome


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Kordiimonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: China: Heilongjiang Province

ncbi_isolation_source: sediment

ncbi_organism_name: Alteribacter keqinensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Germany: Dusseldorf

ncbi_isolation_source: Tap water

ncbi_organism_name: Mycobacteroides salmoniphilum

ncbi_submitter: LNCC


ncbi_assembly_name: IMG-taxon 2663762781 annotated assembly

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Rhodococcoides fascians


ncbi_country: Switzerland: Bern

ncbi_isolation_source: autopsy

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N2.9

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_strain_identifiers: bin N2.9

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Subgingival plaque; from a periodontal pocket at least 6mm deep

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: Melbourne Dental School, University of Melbourne


ncbi_country: Peru


ncbi_organism_name: Devosia sp. UYZn731


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: EMG


ncbi_country: China: Jiangsu Province

ncbi_isolation_source: surface-sterilized roots

ncbi_organism_name: Modestobacter roseus

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Kocuria arenosa


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 588

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Streptococcus nidrosiense

ncbi_submitter: St.Olavs Hospital


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_strain_identifiers: OSS 905

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Methylomarinum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Russia: Kemerovo Oblast; Kuzbass

ncbi_isolation_source: coal

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_assembly_name: Rg

ncbi_isolate: Rg

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_strain_identifiers: Rg

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: New York

ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA

ncbi_isolation_source: Cecum

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Microcella sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Globicatella sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Poultry

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: water

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-101

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS LIN-101

ncbi_submitter: The University Hong Kong


ncbi_submitter: Center for Microbial Communities


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Blautia wexlerae


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Eudoraea sp.

ncbi_submitter: Monash University


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. HMSC19C11

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: FL

ncbi_isolation_source: uterus (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Sediment

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Aarhus University


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseivirga sp.

ncbi_submitter: China University of Geosciences


ncbi_isolate: Clostridium perfringens

ncbi_isolation_source: human faecal sample

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: Clostridium perfringens;Q061.2

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Blautia hydrogenotrophica

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Hangzhou

ncbi_isolation_source: hospital

ncbi_submitter: City university of Hong Kong


ncbi_country: Russia: Western Siberia

ncbi_isolation_source: petroleum-contaminated soil; Western Siberia

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: IBPM RAS


ncbi_country: China: Guangdong

ncbi_isolation_source: citrus phyllosphere

ncbi_organism_name: Curtobacterium caseinilyticum

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellophilus tesquorum

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: University of Wisconsin Madiso


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_submitter: Quadram Institutte


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0301

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: Pseudomonas fragi NBRC 3458

ncbi_strain_identifiers: NBRC 3458

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas fragi;x__Pseudomonas fragi NBRC 3458


ncbi_country: Thailand: Ubon; Kemarach

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Wenzhouxiangellaceae bacterium

ncbi_submitter: Joint Institute for Nuclear Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Sutterella wadsworthensis


ncbi_assembly_name: CLC assembled contigs

ncbi_country: Saudi Arabia

ncbi_isolation_source: sea water

ncbi_organism_name: Candidatus Pelagibacter communis

ncbi_strain_identifiers: SCGC AAA795-M18

ncbi_submitter: UNIVERSITY OF CALIFORNIA - SAN DIEGO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China: HuNan

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nanchang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Lille

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom: England

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_organism_name: Variovorax sp. NFACC27

ncbi_submitter: University of the Pacific


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: jiiln university


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Northeastern University


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: China: Zhejiang

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12096

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- Loc090907-6m_bin-683

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: South Korea: Gwangju

ncbi_submitter: World Institute of Kimchi


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA176

ncbi_submitter: Broad Institute


ncbi_organism_name: Leptospira borgpetersenii serovar Ceylonica

ncbi_strain_identifiers: Piyasena

ncbi_submitter: JCVI


ncbi_organism_name: Paenibacillus sp. FSL M7-0547

ncbi_submitter: Penn State


ncbi_country: India: Puttaparthi; CTVS ICU

ncbi_isolation_source: Endotracheal tube

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sri Sathya Sai Institute of Higher Learning


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Nitrosomonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Nodosilinea sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Exiguobacterium profundum

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium profundum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin32

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_strain_identifiers: KAP bin32

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: LM08-01457 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Streptomyces sp. NPDC001833

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: China: Hangzhou

ncbi_isolation_source: food

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Chitinispirillales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: East China Normal University


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge cutting board swine

ncbi_submitter: FDA


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0422

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Rhodococcus erythropolis

ncbi_strain_identifiers: IEGM 1321

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_organism_name: Tannerellaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058304


ncbi_country: Russia: Moscow

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Rhodanobacter sp.


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_country: China:the Yellow Sea

ncbi_isolation_source: plastic contamination samples

ncbi_organism_name: Microbacterium sp. Y-01

ncbi_submitter: First Institute of Oceanography, State Oceanic Administration


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriaceae bacterium UBA4476

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: AIIMS, New Delhi


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus intermedius B196

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_country: Canada: Alberta

ncbi_isolation_source: Oil sands tailings pond

ncbi_organism_name: Pseudomonas sp. 1912-s

ncbi_submitter: Universite Laval


ncbi_assembly_name: Rumen uncultured genome RUG13172

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Loc081215-1m_bin-1673

ncbi_isolation_source: lake water


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA

ncbi_organism_name: Staphylococcus succinus

ncbi_strain_identifiers: ADQCR

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0165

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Ecuador: Quito

ncbi_submitter: Universidad San Francisco de Quito


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: University of Zurich


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: South Korea: Geoje Island

ncbi_isolation_source: coastal sea water [ENVO:00002150]

ncbi_organism_name: Qipengyuania algicida

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_country: USA: Minneapolis

ncbi_isolation_source: blood

ncbi_submitter: Virginia commonwealth university, Richmond VA, USA


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Glassiibacteriota;s__Candidatus Glassbacteria bacterium RIFCSPLOWO2_12_FULL_58_11


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: cheese form cow s milk; Sjenicki

ncbi_organism_name: Enterococcus italicus

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Poland

ncbi_submitter: Biobank Lab, Department of Molecular Biophysics, Faculty of Biology and Environmental Protection, Univeristy of Lodz, Poland


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0002

ncbi_submitter: Broad Institute


ncbi_organism_name: Adlercreutzia caecimuris


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Yangzhou

ncbi_isolation_source: feces from a porcine slaughterhouse

ncbi_organism_name: Klebsiella sp. TF21-TM

ncbi_submitter: YangZhou university


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: US Food and Drug Administration


ncbi_country: Estonia: Tartumaa; Tartu vald

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: the First Medicine Centre, Chinese PLA General Hospital