ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_level: Scaffold

ncbi_organism_name: Candidatus Saccharimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__unclassified Candidatus Saccharimonas;s__Candidatus Saccharimonas sp.


gtdb_representative: t

ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium RIFOXYB1_FULL_47_11


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Hospital La Paz


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Methyloversatilis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Nocardia sp. NPDC058499

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: uncultured Nitrospirales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hainan University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Clostridiaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Faecalimonas sp.


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Ensifer sp.

ncbi_submitter: Quanzhou Normal University


ncbi_isolation_source: forest soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_submitter: University of Tehran


ncbi_isolate: SPRUCE 634

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 634

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Toronto

ncbi_isolation_source: Assorted Sub Meats

ncbi_submitter: Public Health Ontario


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: South Korea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: ChunLab, Inc.


ncbi_isolation_source: turkey

ncbi_submitter: FDA-CVM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guizhou

ncbi_isolation_source: water of lake

ncbi_organism_name: Rhodobacteraceae bacterium CH30

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Verona, Italy


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


gtdb_type_species_of_genus: t

ncbi_isolation_source: Clone isolated from the evolution experiment described in Ketola et al. 2013 (doi: 10.1111/evo.12148)

ncbi_submitter: UNIVERSITY OF JYVASKYLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P7 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cornell University


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolate: aBpra

ncbi_organism_name: Arsenophonus nasoniae

ncbi_strain_identifiers: aBpra

ncbi_submitter: University of Liverpool


ncbi_organism_name: Clostridium thermobutyricum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acetobacter pasteurianus IFO 3283-07

ncbi_submitter: Acetobacter pasteurianus genome sequencing consortium


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Japan:Wakayama; Wakayama; Wakayama bay

ncbi_organism_name: Biformimicrobium ophioploci

ncbi_refseq_category: reference genome

ncbi_submitter: Kyoto University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Alachua County; Florida

ncbi_isolation_source: feces

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Florida


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Lacunisphaera sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paraburkholderia ginsengisoli NBRC 100965

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_organism_name: uncultured Sulfuritalea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gaopeijia maritima

ncbi_submitter: Shandong Univerity at Weihai


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Arthrobacter zhaoxinii

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: Italy: Caserta

ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella abortus

ncbi_submitter: IZSM-Portici


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: Guangdong Medical University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID7804

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: India: Jaipur

ncbi_isolation_source: soda lake

ncbi_organism_name: Salipaludibacillus sp. CUR1

ncbi_submitter: Central University of Rajasthan


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacillus cereus group sp. BceL039

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL039


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Huzhou

ncbi_isolation_source: topsoil

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: School of Environment and Resources


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef carcass

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Jinan University Affiliated Zhuhai Hospital


ncbi_country: China: Jiangsu

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Montana

ncbi_isolation_source: Rocky Mountain wood tick

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Nine Mile RSA514

ncbi_submitter: National Institutes of Health


ncbi_organism_name: Leuconostoc pseudomesenteroides 4882

ncbi_submitter: INRA Jouy-en-Josas


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 108 - depth 10m

ncbi_organism_name: Erythrobacter sp. REDSEA-S22_B4

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Enterococcus sp. AZ151

ncbi_submitter: Broad Institute


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: Purdue University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC050085

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Roseburia amylophila

ncbi_submitter: UIUC


ncbi_organism_name: Paraburkholderia sp. GAS206C

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces lincolnensis


ncbi_organism_name: Candidatus Aphodosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Aphodosoma;x__unclassified Candidatus Aphodosoma;s__Candidatus Aphodosoma sp.


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolate: AOP42_C2_surf _bin _33

ncbi_organism_name: Ruoffia tabacinasalis

ncbi_strain_identifiers: AOP42_C2_surf _bin _33

ncbi_submitter: Genoscope


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aestuariimicrobium sp. Y1814

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- VK4_bin-1065

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_assembly_name: Rumen uncultured genome RUG14383

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Mogibacterium sp. CM50

ncbi_submitter: J. Craig Venter Institute


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Firmicutes bacterium OM07-11

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium OM07-11


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Stellenbosch University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_strain_identifiers: WHRI 5692A

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Northwest Minzu University


ncbi_organism_name: Helicobacter pylori SA163C

ncbi_submitter: MHH


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Isolate of vaccine strain at NADC lab; Iowa

ncbi_isolation_source: vaccine isolate

ncbi_organism_name: Brucella abortus RB51-AHVLA

ncbi_submitter: U.S. Department of Agriculture


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Acidaminococcus timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: UNIVERSITY OF THE BASQUE COUNTRY UPV/EHU UPV/EHU


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: India: Chilika lagoon

ncbi_isolation_source: sediment

ncbi_organism_name: Roseiconus lacunae

ncbi_submitter: JNTUH


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: BIFSCo Region 2

ncbi_strain_identifiers: USDA-ARS-USMARC-1936;CDC 2012K-0663

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0663


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA4454


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Sterolibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Shewanella fidelis ATCC BAA-318

ncbi_strain_identifiers: ATCC BAA-318

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus LPIH6001

ncbi_submitter: Broad Institute


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Minnesota Department of Health Infectious Disease Laboratory Submission Group


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Bibersteinia trehalosi

ncbi_submitter: Hubei Academy of Agricultural Sciences


ncbi_country: USA: Arizona

ncbi_isolation_source: trach asp

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Comamonas sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Japan: Kanita-machi; Amori Pref.

ncbi_organism_name: Pseudomonas coronafaciens pv. oryzae

ncbi_strain_identifiers: ICMP 9091

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. oryzae


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 20


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of California, Davis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Anaerococcus vaginalis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India: Sardar Krushinagar Agricultural University; Dantiwada; Gujarat

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Clostridium sp. NCR

ncbi_strain_identifiers: NCR

ncbi_submitter: Anand Agricultural University


ncbi_country: USA: midwestern

ncbi_isolation_source: Manila ropes placed above water tanks and feed bunks used as sampling devices

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE102

ncbi_submitter: Broad Institute


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Veillonellaceae bacterium AF80-09CM05A

ncbi_submitter: BGI-Shenzhen


ncbi_country: Venezuela: Distrito Capital; Municipio Libertador; Caracas

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Oscillibacter avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Nocardioides sp. CCNWLW212

ncbi_submitter: Northwest A&F University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GenomeTrakr Project: Ohio Department of Agriculture | Animal Disease Diagnostic Laboratory


ncbi_organism_name: Synechococcus sp. UW179A

ncbi_submitter: UNIVERSITY OF SOUTHERN CALIFORNIA


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Psychrobacter sp. 1Y10

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Versatilivorator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Versatilivoradales;f__Candidatus Versatilivoraceae;g__Candidatus Versatilivorator;x__unclassified Candidatus Versatilivorator;s__Candidatus Versatilivorator sp.


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Nonomuraea salmonea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oklahoma State Universtiy


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Fourth Hospital of Hebei Medical University


ncbi_organism_name: Lachnospiraceae bacterium 7_1_58FAA

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Cambodia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Actinomyces oris

ncbi_submitter: University of Malaya


ncbi_country: Greece

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: not provided

ncbi_organism_name: Cryptobacterium curtum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: University of Queensland


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_assembly_name: freshwater MAG --- MJ130702B_bin-496

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Tang lab


ncbi_organism_name: Ehrlichia cf. muris str. EmCRT

ncbi_strain_identifiers: EmCRT

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Ehrlichia;x__canis group;s__Ehrlichia muris;x__Ehrlichia cf. muris str. EmCRT


ncbi_organism_name: Rhodospirillales bacterium


ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Curvibacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_country: USA: Mayo Clinic; Rochester; Minnesota

ncbi_isolation_source: hip prothesis biopsy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Helicobacter sp.


ncbi_submitter: Zhejiang University


ncbi_isolation_source: Olavius algarvensis individual from shallow marine sediments near sea grass bed

ncbi_submitter: MAX-PLANCK INSTITUTE FOR MARINE MICROBIOLOGY, BREMEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;x__unclassified Spirochaetales;s__Olavius algarvensis spirochete endosymbiont


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Brachybacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cinvestav


ncbi_isolate: NECK SKIN

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: NECK SKIN;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Portugal: North and Centre

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Enterococcus dongliensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: leaves

ncbi_organism_name: Paracoccus pantotrophus

ncbi_submitter: RWTH Aachen University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: China: Zhejiang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Neisseria subflava

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Thailand: Trang

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: South Korea:Anseong-si; Gyeonggi-do

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Crop Science, RDA


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer N sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Ghana:Kassena Nankana District

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Microvirga lotononidis

ncbi_submitter: University of Turku


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: LHE 6

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Pseudomonas sp. UW4

ncbi_submitter: University of Waterloo


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Anoxybacillus sp. FSL W8-0382

ncbi_submitter: Penn State


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Psychrobacillus sp. FJAT-21963

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Spontaneous mutant

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Quzhou Hospital Affiliated to Wenzhou Medical University (Quzhou People's Hospital)


ncbi_organism_name: Lachnotalea sp.

ncbi_submitter: Lomonosov Moscow State University, Faculty of Biology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: Poultry egg

ncbi_organism_name: Escherichia coli

ncbi_submitter: GADVASU


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: [Clostridium] hylemonae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudophaeobacter sp. 1A09344

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;s__Candidatus Yanofskybacteria bacterium RIFCSPLOWO2_01_FULL_42_49


ncbi_submitter: China Agricultural University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Hengyang

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Streptococcus salivarius


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Bauldia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Christian Medical College


ncbi_organism_name: Salmonella sp. NW211

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Treponema denticola

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Utrecht University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Italy

ncbi_isolation_source: bovine meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Louisiana

ncbi_isolation_source: sugarcane mill mud

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Wells College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Stenotrophomonas koreensis

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutia bacterium UBA2987

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA2987


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Colombia: Atlantico

ncbi_isolation_source: water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Beijing Genome Institute


ncbi_country: China: Hebei

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Shigella flexneri Y

ncbi_submitter: CDC


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Iran: Tehran

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Pasteur Institute of Iran


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal composite of dairy cows

ncbi_submitter: USDA


ncbi_submitter: IMPERIAL COLLEGE LONDON

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: University Miguel Hernandez


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Buchnera aphidicola (Hyalopterus amygdali)

ncbi_submitter: Centre for Microbiology and Environmental Systems Science


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Guangdong Ocean University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_organism_name: Atlantibacter subterraneus

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: [Clostridium] aerotolerans DSM 5434

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_country: USA: Detroit

ncbi_submitter: UC San Diego


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: Slovakia

ncbi_isolation_source: bryndza cheese

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Faculty of Natural Sciences of the Comenius University in Bratislava


ncbi_country: USA

ncbi_isolation_source: environment; non-food

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Bradyrhizobium elkanii

ncbi_strain_identifiers: USDA 238


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged pork steak (+ 1 CD)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: India: Tamil Nadu; Fort Tiruchirappalli

ncbi_isolation_source: stone ruins (granite) of a fort

ncbi_organism_name: Agrococcus sp. TF02-05

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Lachnoclostridium sp.


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_assembly_name: freshwater MAG --- Loc090402-8m_bin-0971

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia obeum

ncbi_submitter: EMG


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides stercoris


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Salmonella sp. NW873

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Truepera sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: chlorinated drinking water; site 5

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Glasgow


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Brazil: Patos

ncbi_isolation_source: lung fragment

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Actinocorallia aurantiaca

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pantoea piersonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ABFPV

ncbi_submitter: NHGRI


ncbi_isolation_source: Soil

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Michigan State University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: National University of Singapore


ncbi_country: Portugal

ncbi_isolation_source: raw wastewater

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus asini

ncbi_submitter: EMG


ncbi_country: Russia: Central region

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_strain_identifiers: Km 4

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Brucella anthropi

ncbi_submitter: Indian Institute of Technology


ncbi_assembly_name: IMG-taxon 2687453730 annotated assembly

ncbi_organism_name: Granulicella pectinivorans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Palmyra Atoll

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Okeania sp. SIO2G5

ncbi_submitter: UCSD


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Naval Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: instituto de investigaciones biologicas clemente estable


ncbi_organism_name: Streptomyces marokkonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Ureaplasma sp.


ncbi_organism_name: Slackia heliotrinireducens

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Russia: Yakutia

ncbi_isolation_source: deep soil layers

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Chile

ncbi_isolation_source: Derived from strain Pseudomonas aeruginosa MF1

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Saudi Arabia

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Spain: Cabo de Gata; Almeria

ncbi_isolation_source: whole insect macerate from a Lab maintained population of field collected O. laevigatus

ncbi_organism_name: Leucobacter sp. OLIS6

ncbi_submitter: Swansea University


ncbi_country: USA

ncbi_isolation_source: human gut

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Pseudomonas zhanjiangensis

ncbi_submitter: Anhui University of Chinese Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Zurich


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfurivibrionaceae bacterium

ncbi_submitter: University of Bremen


ncbi_organism_name: Ligilactobacillus ruminis S23

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Flavobacterium sp. 22076

ncbi_submitter: Yantai University


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: China: Ningxia

ncbi_isolation_source: pig fecal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-3016

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Corynebacterium pseudotuberculosis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China:Zhujiang Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Southern Medical University


ncbi_organism_name: Candidatus Nitrosopelagicus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Nitrososphaerota;x__Nitrososphaerota incertae sedis;g__Candidatus Nitrosopelagicus;x__unclassified Candidatus Nitrosopelagicus;s__Candidatus Nitrosopelagicus sp.


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA5150


ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: UR CVS

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Holdemanella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: USA: CA

ncbi_isolation_source: Raw Cow Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Waterloo


ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Brazil: Buzios Island

ncbi_isolation_source: coral mucus

ncbi_organism_name: Paracoccus sp. SM22M-07

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. SM22M-07


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: San Diego State University


ncbi_country: Australia: Perth

ncbi_isolation_source: Lung sputum

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Curtin University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-426-L23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 0-3 cm

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 183

ncbi_submitter: SC


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_assembly_name: Enterobacter timonensis

ncbi_organism_name: Pseudenterobacter timonensis


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Turin


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India

ncbi_submitter: Washington State University


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium chitinilyticum

ncbi_submitter: Ocean University of China


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pedobacter sp. GR22-6

ncbi_submitter: Lycoming College


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_country: Senegal: Dakar

ncbi_isolation_source: urine

ncbi_submitter: National University Teaching Hospital Aristide le Dantec


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Thermovirga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Prochlorococcus marinus str. GP2

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. NPDC058045

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Paraburkholderia sp. EG304

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Seoul National University


ncbi_organism_name: Halothece sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Micromonosporaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: South Africa: Mpumalanga

ncbi_isolation_source: Beef mince

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacillus cereus group sp. BceL294

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL294


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_organism_name: alpha proteobacterium SCGC AAA280-P20

ncbi_strain_identifiers: SCGC AAA280-P20

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__unclassified Alphaproteobacteria;s__alpha proteobacterium SCGC AAA280-P20


ncbi_country: USA: Montana

ncbi_isolation_source: Rocky Mountain wood tick

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: Nine Mile RSA363

ncbi_submitter: National Institutes of Health


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Chicago


ncbi_organism_name: Devosia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Photorhabdus luminescens

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H21;x__Escherichia coli O104:H21 str. CFSAN002237


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Siphonobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Antarctica: Vestfold Hills

ncbi_isolation_source: quartz stone sublithic biofilm

ncbi_organism_name: Subsaximicrobium wynnwilliamsii

ncbi_submitter: University of Tasmania


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID486

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: Eastern Cape

ncbi_isolation_source: pleural fuid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 14

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__environmental samples;s__uncultured Patescibacteria group bacterium


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: Alistipes timonensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Nottingham Trent University


ncbi_country: Taiwan

ncbi_isolation_source: PUS

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Eisenbergiella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudorhodoplanes sinuspersici

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_submitter: Sichuan University


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S057

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S057


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: City University of Hong Kong


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Spain: Tarragona

ncbi_isolation_source: brine

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: IMEDEA


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Escherichia coli TW11681

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Pakistan: Burewala; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. Bo_3

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Bradford; NH

ncbi_organism_name: Pseudomonas fluorescens

ncbi_strain_identifiers: LoriBL

ncbi_submitter: Hubbard Center for Genome Studies


ncbi_country: Italy: Pavia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pavia


ncbi_organism_name: Streptomyces sp. bgisy126

ncbi_submitter: BGI Research


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Wuxi Maternity and Child Health Care Hospital


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: SC


ncbi_country: South Korea:Seoul

ncbi_isolation_source: blood

ncbi_submitter: Hallym University College of Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM72

ncbi_submitter: AgResearch


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P63P

ncbi_submitter: South China Agricultural University


ncbi_country: China: Wudalianchi; Heilongjiang Province

ncbi_organism_name: Streptomyces sp. CB02261

ncbi_submitter: The Scripps Research Institute


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky;x__Salmonella enterica subsp. enterica serovar Kentucky str. 29439


ncbi_country: Germany

ncbi_isolation_source: cervical swab

ncbi_submitter: Justus-Liebig University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Thauera sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at Dallas


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Brazil: Mato Grosso; Primavera do Leste

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Mato Grosso Cotton Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Actinomycetes bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Christensenellales bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Chromohalobacter sarecensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Zhejiang A and F University


ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Psychromonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Blastomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Loc090402-4m_bin-0732

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Phycisphaerae bacterium


ncbi_organism_name: Collinsella sp.


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Alteripontixanthobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Enterococcus sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Saint-Louis Hospital


ncbi_country: USA

ncbi_organism_name: Sphingomonas sp. ABOLD

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Norway: Bergen

ncbi_isolation_source: synovial fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Antioquia


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Miami

ncbi_isolation_source: Simulated Florida Golf course soil sample

ncbi_organism_name: Burkholderia sp. MR1

ncbi_submitter: Oak Ridge National Lab


ncbi_country: Sweden

ncbi_isolation_source: abscess

ncbi_organism_name: Mycobacterium tuberculosis BTB07-261

ncbi_submitter: Broad Institute


ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_submitter: EMG


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: NanJing University


ncbi_assembly_name: freshwater MAG --- Loc080925-4-5m_bin-0190

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_organism_name: Emergencia timonensis

ncbi_submitter: Washington University in St. Louis


ncbi_country: Belgium

ncbi_isolation_source: BALf

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_submitter: University of Southampton


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: Campylobacter coli CVM N29710

ncbi_submitter: FDA/CVM


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Micavibrio sp. UBA6964

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_genome_category: derived from environmental sample

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium RAAC3_TM7_1


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Japan

ncbi_isolation_source: paddy soil

ncbi_organism_name: Geomonas azotofigens

ncbi_submitter: The University of Tokyo


ncbi_assembly_name: IMG-taxon 2596583541 annotated assembly

ncbi_organism_name: Bacteroides sp. AR29

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. M0398

ncbi_submitter: China Agricultural University


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: South Pacific

ncbi_organism_name: Pseudoalteromonas ruthenica

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D7_bin-180

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Mesosutterella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Gemella morbillorum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Rheinheimera aquimaris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Providence; RI

ncbi_isolation_source: cecum of female; 6-week old mouse

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Brown University


ncbi_organism_name: Akkermansia massiliensis

ncbi_submitter: Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Kineococcus sp. SYSU DK013

ncbi_strain_identifiers: SYSU DK013

ncbi_submitter: Sun Yat-sen University


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas sp. PA-1-8C

ncbi_submitter: NIAB East Malling Research


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: sepsis

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: R-75726 assembly

ncbi_organism_name: Burkholderia sola

ncbi_submitter: LM-UGent


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus sp. PBL-C9

ncbi_submitter: Malaysia Genome Institute, National Institutes of Biotechnology Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PBL-C9


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Hungatella sp.