ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


gtdb_representative: t

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_assembly_level: Scaffold

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lactococcus muris

ncbi_refseq_category: reference genome

ncbi_submitter: Northeast Agricultural University

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: China:Zhongshan moutain Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: NJ-W

ncbi_submitter: BioInformatics Center


ncbi_organism_name: Staphylococcus aureus subsp. aureus MW2

ncbi_submitter: NITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus MW2


ncbi_country: South Korea:Jinju

ncbi_isolation_source: throat

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Aquabacterium sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp.


ncbi_country: Germany: Regensburg

ncbi_isolation_source: blood [UBERON:0000178]

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef seawater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_assembly_name: IMG-taxon 2599185219 annotated assembly

ncbi_organism_name: Corynebacterium spheniscorum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India

ncbi_isolation_source: Aerial roots

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Post Graduate Department of Biosciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Qinghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: OR

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM1476

ncbi_submitter: IGS


ncbi_country: Malawi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Incheon

ncbi_isolation_source: Sea sand

ncbi_organism_name: Pseudothioclava arenosa

ncbi_submitter: Thioclava arenosa CAU 1312 (MCCC 1A12005) is available from MCCC (Marine Culture Collection of China) (http://www.mccc.org.cn/).

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Henan

ncbi_organism_name: Amycolatopsis nivea

ncbi_strain_identifiers: CFH S0261

ncbi_submitter: Xinxiang Medical University


ncbi_country: China: Zhejiang

ncbi_isolation_source: Ward

ncbi_submitter: the First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken farm

ncbi_submitter: sichuan university


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Productos Lacteos de Asturias (IPLA-CSIC)


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: China:Fujian provience; Longyan city; Zijin gold and copper mning

ncbi_isolation_source: heavy metal containmented soil

ncbi_organism_name: Cupriavidus necator

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis TX0860

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_submitter: Prince of Songkla University


ncbi_assembly_name: Rumen uncultured genome RUG11071

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Hainan

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12141

ncbi_submitter: South China Agricultural University


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: China: Beijing

ncbi_isolation_source: sputum specimen

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1277

ncbi_submitter: Broad Institute


ncbi_country: USA: Hamilton; Montana

ncbi_isolation_source: Crushed Rocky Mountain wood ticks

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: RMSFV

ncbi_submitter: NIAID


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Ligilactobacillus sp.


ncbi_organism_name: Shigella sonnei

ncbi_submitter: National University of Sciences and Technology (NUST)


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: food

ncbi_organism_name: Shigella boydii

ncbi_submitter: JCVI


ncbi_country: China

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Taiwan: Hsinchu City

ncbi_organism_name: Fructobacillus papyriferae

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: USA: IA

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridium sp. CAG:524

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Chlamydia pecorum

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptomyces sp. NPDC051985

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Fervidobacteriaceae bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Streptacidiphilus sp. EB129

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Bacillus infantis

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: the first people's hospital of Yongkang


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae FSL F2-338

ncbi_submitter: The J. Craig Venter Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_country: China: Maanshan; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_country: China: Beijing; Lake Miyun

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: laboratoire des substances bioactives


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: freshwater MAG --- AM-2014-D3_bin-489

ncbi_submitter: BILS


ncbi_country: Thailand: Chiang Rai

ncbi_isolation_source: hot spring soil

ncbi_organism_name: Micromonospora solifontis

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_country: South Africa: Kwazulu-Natal

ncbi_isolation_source: ascitic fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China:Hong Kong

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Hospital of North Norway


ncbi_country: India: Pune

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter sp. HG048

ncbi_submitter: National Centre for cell Science


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Coprobacillus sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom:England


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Ja1_bin-0438

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Portugal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: [Clostridium] symbiosum


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_isolation_source: Caecum


ncbi_country: India

ncbi_isolation_source: chicken meat/poultry

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom: Hatchlands

ncbi_isolation_source: Oak rhizosphere soil

ncbi_organism_name: Dryocola boscaweniae

ncbi_submitter: UWE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Beijing

ncbi_isolation_source: MHB broth

ncbi_submitter: China agriculture university


ncbi_assembly_name: IMG-taxon 2700988709 annotated assembly

ncbi_organism_name: Flavobacterium chilense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Arthrobacter sp. UYEF2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridium intestinale


ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: IMGAG (Universitaetsklinikum Tuebingen)


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Komeilibacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;x__unclassified Candidatus Komeilibacteria;s__Candidatus Komeilibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_organism_name: Longimicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_submitter: BGI


ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: swab from a hand-washing sink as part of the hospital routine surveillance program

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Melbourne


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas sp. LB-090624

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_isolation_source: Urine (midstream specimen of urine)

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Thailand: Chiang Rai

ncbi_isolation_source: a hot spring canal

ncbi_organism_name: Micromonospora sp. HM5-17

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_country: USA: IL

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Bacillus sp. ISL-45

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ISL-45


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Clostridioides difficile CD196

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_country: China: Panjin; Liaodong Bay

ncbi_isolation_source: marine sediments

ncbi_organism_name: Lysinibacillus sp. ZYM-1

ncbi_submitter: Dalian university of technology


ncbi_country: Chile

ncbi_isolation_source: ham

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Neomicrothrix subdominans


ncbi_isolation_source: not isolated

ncbi_submitter: Okinawa Institute of Advanced Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Tift Co. GA

ncbi_isolation_source: seedling

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Butyrivibrio sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0418

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria cossartiae subsp. cossartiae

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cossartiae


ncbi_organism_name: Sutcliffiella horikoshii DSM 8719

ncbi_submitter: Cinvestav-Irapuato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Sutcliffiella;s__Sutcliffiella horikoshii;x__Sutcliffiella horikoshii DSM 8719


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Helicobacter japonicus


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: SWINE INTESTINE

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces sp. NPDC001832

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: caecum

ncbi_organism_name: Erysipelatoclostridium sp. An173

ncbi_submitter: Veterinary Research Institute


ncbi_assembly_name: Rumen uncultured genome RUG451

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Cepheid


ncbi_isolate: VTEC

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: Brazil

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: chicken wing

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Faculty of Veterinary Medicine, Ankara University (FVMAU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Devosia honganensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micromonospora carbonacea

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_assembly_name: Rumen uncultured genome RUG10016

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Rumen uncultured genome RUG12175

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: University of Auckland


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: China: Hunan

ncbi_isolation_source: brain and liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium UBA5522

ncbi_submitter: University of Queensland


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: annelid root tissue scrapped from turkey femur surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: ProBone


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lentilactobacillus buchneri NRRL B-30929

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Neobacillus drentensis

ncbi_submitter: Auburn University


ncbi_assembly_name: Rumen uncultured genome RUG14141

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~10 day-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Mount Hope Bay; Rhode Island

ncbi_organism_name: Halobacteriovorax marinus

ncbi_submitter: Providence College


ncbi_country: China: Guangdong

ncbi_isolation_source: pond water

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Galway


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. R-M65

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia territorii

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Nanjing

ncbi_isolation_source: paddy soil

ncbi_organism_name: Rhodobacteraceae bacterium QY30

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: USA: Kentucky

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridium sp. BJN0013

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Vreelandella vilamensis

ncbi_submitter: University of Sevilla, Spain


ncbi_assembly_name: Rumen uncultured genome RUG12062

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus durans

ncbi_strain_identifiers: P16 CL A28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: USA:Pasadena; California

ncbi_isolation_source: soil/tree roots near Citrus sinensis

ncbi_organism_name: Paraburkholderia edwinii

ncbi_submitter: California Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Casimicrobium huifangae

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Chlamydia psittaci 02DC18

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Legionella rubrilucens

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Beijing

ncbi_isolation_source: blood

ncbi_submitter: Guangzhou Medical University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Institute of Life Sciences and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: South Korea: Taean-gun

ncbi_isolation_source: forest soil

ncbi_organism_name: Streptomyces spectabilis

ncbi_submitter: Seoul National University


ncbi_country: China: Sichuan; Dujiangyan; Hongkou

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Egypt

ncbi_isolation_source: Desert soil

ncbi_organism_name: Micromonospora sp. DH13

ncbi_submitter: Ain Shams University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolate: Genome sequencing of Nitrospira japonica strain NJ11

ncbi_isolation_source: activated sludge

ncbi_organism_name: Nitrospira japonica

ncbi_submitter: WASEDA university


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_assembly_level: Chromosome

ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Azosocius agrarius

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__;f__Candidatus Azoamicaceae;g__Candidatus Azosocius;s__Candidatus Azosocius agrarius

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Azoamicaceae;g__Candidatus Azosocius;s__Candidatus Azosocius agrarius


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFOXYD1_FULL_42_14


ncbi_organism_name: Chroococcales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Burkholderiales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: EMG


ncbi_country: Canada: Calgary; Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: University of Galway


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Sulfuriferula sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_country: South Korea: Hanam-si

ncbi_organism_name: Simplicispira hankyongi

ncbi_submitter: Hankyong National University


ncbi_organism_name: uncultured Massilia sp.


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_isolation_source: Throat swab 15

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut


ncbi_organism_name: Escherichia sp. WS470

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 256

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus cereus group sp. BC59

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC59


ncbi_organism_name: Corynebacterium variabile

ncbi_submitter: University of Minnesota


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella sp. SKLX115403

ncbi_submitter: Zhejiang university


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Syntrophotalea sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Candidatus Gallimonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;x__unclassified Candidatus Gallimonas;s__Candidatus Gallimonas sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Germany: Greifswald

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus sp. DIV0808

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces iakyrus


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Turku


ncbi_organism_name: Streptococcus mitis


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Scripps Institution of Oceanography


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Tang lab


ncbi_country: Canada: Red Deer

ncbi_organism_name: Heyndrickxia oleronia

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Granulosicoccaceae sp. 1_MG-2023

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Rhodococcus gordoniae

ncbi_submitter: SC


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_submitter: LSTM


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_assembly_name: freshwater MAG --- LinL2_bin-0412

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_country: Canada: Guelph

ncbi_isolation_source: Lung tissue

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Helsinki


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-01414

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Monoglobales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Baiyang Lake

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas xionganensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Universita degli Studi di bari


ncbi_submitter: INSTITUT PASTEUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_isolation_source: animal with tuberculosis arrested by chemotherapy

ncbi_organism_name: Mycolicibacterium flavescens

ncbi_submitter: Uppsala University


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Alicycliphilus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EBI


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (caries +)

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NBC_00385

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus vestibularis ATCC 49124

ncbi_submitter: Baylor College of Medicine


ncbi_country: Fiji

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: India: Vellore

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Biofilm and Antimicrobial Resistance Consortium of ODA receiving countries


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Denmark: Odense

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NRRL B-3229

ncbi_strain_identifiers: NRRL B-3229

ncbi_submitter: University of Illinois


ncbi_organism_name: Fusobacterium nucleatum


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: Svalbard

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. NZS71

ncbi_submitter: Shandong University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Streptococcus agalactiae GB00940

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_isolation_source: Broviac blood

ncbi_organism_name: Bacillus sp. FDAARGOS_527

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FDAARGOS_527


ncbi_organism_name: Microcystis aeruginosa PCC 9807

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: uncultured Legionella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Aeromonas sp. 31P

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: marine

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Zhongshania sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: The University of Queensland


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0050

ncbi_submitter: Broad Institute


ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae UCICRE 1

ncbi_strain_identifiers: UCICRE 1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCICRE 1


ncbi_country: USA: CO

ncbi_isolation_source: feces

ncbi_organism_name: Shigella boydii

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: IMG-taxon 2599185238 annotated assembly

ncbi_organism_name: Nereida ignava DSM 16309

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Dalhousie University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: perianal region

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine


ncbi_country: Tunisia: Korba

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Fusobacterium gastrosuis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Proteus terrae

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Texas; Kleberg County; Upper Laguna Madre

ncbi_isolation_source: bioplastic (PHA) biofilm from water-sediment interface of coastal lagoon

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 94


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: warwound (surv)

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Miami University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF76-10pH9T

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: USA: Wisconsin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-481

ncbi_strain_identifiers: NRRL S-481

ncbi_submitter: University of Illinois


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Clostridioides sp. ES-S-0001-02

ncbi_submitter: Northern Arizona University


ncbi_country: Kenya

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_organism_name: Tessaracoccus aquimaris

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: pig feces

ncbi_submitter: Yangzhou University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: New York City

ncbi_isolation_source: incision site unspecified

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Chitinophaga ginsengisegetis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces rectiviolaceus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: water samples from two horizons (5 m and 20 m) were filtered through the net (size 27-um) and then filtered through nitrocellulose filters with a pore size of 0.22 um

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA

ncbi_isolation_source: cornea

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of New South Wales


ncbi_country: Mexico

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNAM


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: EMG


ncbi_country: Thailand: Roi ed

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Kasetsart University


ncbi_assembly_name: Thalassomonas sp. strain RHCl1

ncbi_organism_name: Thalassomonas sp. RHCl1

ncbi_submitter: iBB-IST


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore3_bin-0378

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Helicobacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bordetella pertussis I002

ncbi_submitter: JCVI


ncbi_organism_name: Angelakisella massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Mogibacterium diversum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: Switzerland: Morens

ncbi_isolation_source: bulk soil

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: UMR5557 Laboratoire d'Ecologie Microbienne


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Terracoccus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SurvCARE


ncbi_assembly_name: Salmonella enterica CVM 43844 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: University of South Africa


ncbi_country: China: Anhui

ncbi_isolation_source: activated sludge in the pharmaceutical factory

ncbi_organism_name: Rhodococcus sp. A5(2022)

ncbi_submitter: Anhui normal university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. A5(2022)


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: University of Gafsa


ncbi_organism_name: Yersinia aldovae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: IN

ncbi_isolation_source: small intestine canine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Latah; ID

ncbi_isolation_source: cattle

ncbi_submitter: University of Idaho


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured PS1 clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__environmental samples;s__uncultured PS1 clade bacterium


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus sp. 2022WUSS037

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: uncultured Enterovirga sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Jijel


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Nacional de Pediatria


ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: rectal swab

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: China: Heilongjiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: private dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Aurantiacibacter atlanticus

ncbi_submitter: The Third Institute of State Oceanic Administration


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Yonsei University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Bacillus haynesii

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Methane-rich estuary sediments 52-54 cm

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium DG_27


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Long Beach; CA

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: nodule

ncbi_submitter: CEBITEC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Frankiales;f__Frankiaceae;g__Protofrankia;x__unclassified Protofrankia;s__Protofrankia symbiont of Coriaria myrtifolia


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Firmicutes bacterium AF19-2LB

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF19-2LB


ncbi_assembly_name: Rumen uncultured genome RUG556

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA6936

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA6936


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: Spain: Granada

ncbi_isolation_source: mitral valve

ncbi_organism_name: Lactococcus garvieae

ncbi_strain_identifiers: Lg-Granada

ncbi_submitter: University of Valencia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Corynebacteriaceae;g__Corynebacterium;s__Corynebacterium humireducens;x__Corynebacterium humireducens NBRC 106098 = DSM 45392


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: KS

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Synechocystis sp. PCC 6803

ncbi_submitter: Institute of Biology 3, Faculty of Biology, Albert-Ludwigs-University Freiburg


ncbi_country: Portugal: National Park of Peneda-Geres; Ermida

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universidade do Minho


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 8-415-05_S1_C2

ncbi_submitter: IGS


ncbi_isolation_source: food production metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Azerbaijan

ncbi_isolation_source: fleas Ctenophtalmus secundus

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Delftia sp. BR1

ncbi_submitter: Southern University and AM College


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Beijing Genome Institute


ncbi_country: France

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea nosoerga

ncbi_submitter: IHU mediterranee infection


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Rhodospirillales bacterium


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Labrenzia sp. ac12

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Toho University


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Netherlands

ncbi_isolation_source: healthy human volunteer

ncbi_organism_name: Enterococcus faecium E980

ncbi_submitter: Dept. of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Sungiibacteriota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungiibacteriota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUTO POLITECNICO NACIONAL


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University College Cork


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces xanthophaeus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Yibin

ncbi_isolation_source: pit mud

ncbi_organism_name: Caproiciproducens galactitolivorans

ncbi_submitter: Sichuan University of Science & Engineering


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: China: Beijing

ncbi_isolation_source: Sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Tri-Service General Hospital


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Anaerovoracaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Cyanobacterium sp.


ncbi_organism_name: Bacillus cereus


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: chloroflexi

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_country: Brazil: Belem

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Halobacillus naozhouensis

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Weizmann Institute of Science


ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Paenibacillus sp. FSL H8-0282

ncbi_submitter: Penn State


ncbi_organism_name: Sulfuricellaceae bacterium

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: China: xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Micromonospora profundi

ncbi_submitter: Tarim University,


ncbi_isolation_source: gut

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Aphanothece sp.

ncbi_submitter: Stockholm University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Markham Ice Shelf

ncbi_isolation_source: freshwater lake

ncbi_organism_name: filamentous cyanobacterium Phorm 46

ncbi_strain_identifiers: Phorm 46

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__filamentous cyanobacterium Phorm 46


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Pelethousia gallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Pelethousia;s__Candidatus Pelethousia gallinarum


ncbi_country: Spain: Ebro Delta; Catalonia

ncbi_isolation_source: Mussels

ncbi_organism_name: Malaciobacter molluscorum LMG 25693

ncbi_strain_identifiers: CECT 7696

ncbi_submitter: USDA, ARS, WRRC


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-1131

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B340;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: India

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_country: China: Jilin

ncbi_organism_name: Gilliamella sp. M0364

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- A-3_bin-248

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Gallionellaceae bacterium

ncbi_submitter: BILS


ncbi_country: Papua New Guinea

ncbi_organism_name: Burkholderia pseudomallei MSHR139

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_submitter: Hunan Agricultural University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Sao Paulo


ncbi_country: USA

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Acetobacter aceti

ncbi_strain_identifiers: NBRC 3281

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: University of Chicago


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_organism_name: [Ruminococcus] lactaris ATCC 29176

ncbi_submitter: Stanford University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: Brucella abortus

ncbi_submitter: Madurai kamaraj university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-6204

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Public Health Laboratory, NPHL, Khartoum, Sudan


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: UM Hospital; Miami; Florida

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Photorhabdus bodei

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV235

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Germany

ncbi_organism_name: Listeria monocytogenes WSLC1042

ncbi_submitter: ETH Zurich


ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Morganella morganii

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Rutgers; NJ

ncbi_isolation_source: Biocathode MCL; marine biofilm

ncbi_organism_name: Leisingera aquaemixtae

ncbi_submitter: US Naval Research Laboratory


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Desulfotomaculum sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Zongyangia hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: South Korea:Seoul

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Veillonella sp. KGMB01456

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_isolate: AOP30_C2_surf _bin _17

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP30_C2_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolate: AOP9_I1_surf _bin _10

ncbi_organism_name: Pseudoalteromonas prydzensis

ncbi_strain_identifiers: AOP9_I1_surf _bin _10


ncbi_organism_name: Clostridium ljungdahlii

ncbi_submitter: University of Tuebingen


ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: Pennsylvania State University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8514

ncbi_submitter: University of Exeter