ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: EMG


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: Chile: Comau Fjord

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: water column

ncbi_organism_name: Pseudoprimorskyibacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Bifidobacterium pullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Hungatella hathewayi


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_country: USA: Virginia

ncbi_isolation_source: host body

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Uppsala University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Streptomyces griseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Eel River; South Fork Eel River between Leggett and Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: stool

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Dalhousie University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE144

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter sp. LMG 17559

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: USA: FL

ncbi_isolation_source: fecal beef calf

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Hickory Corners; MI

ncbi_organism_name: Bradyrhizobium sp. KBS0727

ncbi_submitter: Indiana University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Poland

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Streptacidiphilus sp. EB103A

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_submitter: Sultan Qaboos University


ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Iowa State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Ministry of Education and Training, Vietnam


ncbi_organism_name: Streptomyces sp. P10-4

ncbi_submitter: Shanxi Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG832

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: freshwater MAG --- Ki3-D4_bin-355

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS


ncbi_country: Bolivia: La Paz

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Queensland


ncbi_country: China: Xinjiang

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. N502

ncbi_submitter: Xinjiang University


ncbi_country: Spain

ncbi_isolation_source: fecal sample from zoo

ncbi_organism_name: Bifidobacterium saguinibicoloris

ncbi_refseq_category: reference genome

ncbi_submitter: University of Parma

ncbi_type_material_designation: assembly from type material


ncbi_country: Tanzania: Dar es Salaam

ncbi_isolation_source: patient in hospital

ncbi_submitter: University of Bergen


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Microbacterium testaceum

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Agrobacterium deltaense

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: University of Illinois


ncbi_organism_name: Clostridium cellulovorans 743B

ncbi_submitter: Mie University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Sulfurovum sp. NBC37-1

ncbi_submitter: Japan Agency for Marine-Earth Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium CG_4_10_14_3_um_filter_35_13


ncbi_country: China: Jilin

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Singapore

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospira sp. UBA5699

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Agrobacterium cavarae

ncbi_submitter: UNESP-FCAV


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Qinghai

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 08-01229

ncbi_submitter: Broad Institute


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Selenomonas noxia


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Azerbaijan: Absheron peninsula

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: Atlantic Ocean

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Lucinoma myriamae


ncbi_country: USA: Oakland; CA

ncbi_isolation_source: anal gland

ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: UC Davis


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_country: Finland

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_organism_name: Thermus sp.

ncbi_submitter: Montana State University


ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Cupriavidus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Sphingomonadaceae bacterium


ncbi_isolation_source: intestinal content

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: ChinaCDC


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Micromonospora echinospora

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Australia: Perth

ncbi_isolation_source: Retail table eggs

ncbi_submitter: Murdoch University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: blood from hospitalized preterm neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: San Marcos; TX

ncbi_isolation_source: Wild adult 2.2

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Texas State University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: GenFS


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: France: Rouen

ncbi_isolation_source: urine

ncbi_submitter: Normandie Univ


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: University of Colorado at Boulder


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Gallionella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Teagasc


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Hyphomonadaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC056410

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Brevibacillus sp. 179-C1.1 HS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pseudomonas sp. Qb2C1

ncbi_submitter: LMU Munich


ncbi_organism_name: Bartonella sp. MU70NMGDW

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Megasphaera sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: China:Shanghai Veterinary Research Institute; CAAS

ncbi_isolation_source: nasal swab of a pig with respiratory infection

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Shanghai Veterinary Research Institute, CAAS


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-442-N17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Peritoneal Fluid

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human gut

ncbi_organism_name: Dermabacter jinjuensis

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bulgaria

ncbi_isolation_source: Black sea water

ncbi_organism_name: Pseudodesulfovibrio sp. S3

ncbi_submitter: SIAM


gtdb_type_species_of_genus: t

ncbi_country: South Korea

ncbi_isolation_source: Sea water

ncbi_organism_name: Parashewanella spongiae

ncbi_submitter: Korea Institue of Ocean Science and Technology


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_submitter: JPIAMR ARMIS


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_country: China

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_strain_identifiers: SaT

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Fimbriimonas sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea: Gyeongsan-si

ncbi_isolation_source: An agricultural soil which has been contaminated with an insecticide DDT for about 60 years

ncbi_organism_name: Paralcaligenes sp. KSB-10

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N43480 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii


ncbi_country: Russia: Vologda region

ncbi_isolation_source: peat bog

ncbi_organism_name: Candidatus Deferrimicrobium borealis

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__Candidatus Deferrimicrobium;s__Candidatus Deferrimicrobium borealis


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_40_12


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Martinique

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of California, Davis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: France

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter youngae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: cold seep

ncbi_organism_name: Arcobacter sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: the East China Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Metabacillus sediminilitoris

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: India

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: Zoo Composter number 3

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Instituto de Biotecnologia


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Serbia

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Rhizobium esperanzae

ncbi_strain_identifiers: SEMIA 4058

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- T7_bin-136

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_country: Laos

ncbi_isolation_source: chicken stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolate: 368 shch

ncbi_strain_identifiers: BCG-1;368 shch

ncbi_submitter: Central Research Institute for Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Korea

ncbi_isolation_source: Golden sea squirt; Halocynthia roretzi

ncbi_organism_name: Lutimonas halocynthiae

ncbi_strain_identifiers: CECT 8444

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_submitter: University of Georgia


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Streptomyces sp. NPDC052292

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Proteus hauseri

ncbi_submitter: University of Pittsburgh


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter sp. MIT 99-10781

ncbi_submitter: MIT


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Turkey: Mersin

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: University of Toronto Mississauga


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with normal maize

ncbi_organism_name: Dialister hominis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Guizhou Province

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. SS

ncbi_strain_identifiers: SS

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_organism_name: Gluconobacter albidus

ncbi_strain_identifiers: NBRC 3250

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Antarctica: Herring Island

ncbi_organism_name: Hymenobacter sp. NBH84

ncbi_submitter: University of New South Wales


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Microbacterium sp. NPDC079176

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: Karst cave sediment

ncbi_organism_name: Streptomyces cavernae

ncbi_strain_identifiers: SYSU K10008

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Propionicicella superfundia DSM 22317

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Huzhou cdc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Russia: Moscow

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Pannonibacter sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Uberlandia

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Federal University of Uberlandia


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan University


ncbi_isolation_source: water

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Thioalkalivibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: uncultured Ferruginibacter sp.


ncbi_organism_name: Streptomyces hygroscopicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Terriglobia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Milan


ncbi_organism_name: Candidatus Agathobaculum pullistercoris


ncbi_submitter: Ruijin Hospital affiliated to Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Candidatus Hydrogenedens sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;x__unclassified Candidatus Hydrogenedens;s__Candidatus Hydrogenedens sp.


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Biotechnology, BTU Cottbus-Senftenberg


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_country: USA: Mill Valley; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Synergistales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_country: USA:New York Albany

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: California; The Cedars highly alkaline spring BS5

ncbi_organism_name: Alishewanella sp. BS5-314

ncbi_submitter: Tokyo Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA3354

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater


ncbi_country: China: Weihai

ncbi_organism_name: Agarivorans sp. B2Z047

ncbi_submitter: Shandong University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: faece

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Xiamen University


ncbi_country: Denmark: Aarhus University lake; Aarhus

ncbi_isolation_source: microaerophilic veil; freshwater sediment

ncbi_organism_name: Phyllobacterium calauticae

ncbi_submitter: Aarhus University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan

ncbi_isolation_source: Crassostrea gigas

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Chung Cheng University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. AF32-8BH

ncbi_submitter: BGI


ncbi_organism_name: Actinocrinis sp.

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: Dianchi Lake

ncbi_organism_name: Microcystis aeruginosa FACHB-905 = DIANCHI905

ncbi_submitter: South China Normal University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: superior fermented meat

ncbi_organism_name: Lactiplantibacillus paraplantarum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: Monash University


ncbi_country: Spain: Catalunya

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA

ncbi_isolation_source: Vagina

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Paenalcaligenes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC058291

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer D sample 29 PSU in greater than .8 micron size fraction

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: Erythrobacter ramosus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Mycobacterium tuberculosis CCDC5180

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Pantoea agglomerans

ncbi_strain_identifiers: FDAARGOS 1447

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Comamonas sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: IMG-taxon 2671180174 annotated assembly

ncbi_organism_name: Streptomyces sp. PAN_FS17

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Russia: Nizhniy Novgorod

ncbi_isolation_source: liquor

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_country: Chile: Santiago

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_strain_identifiers: OMJ 145

ncbi_submitter: University of Maryland, Baltimore


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: EPFL


ncbi_organism_name: Nonomuraea sp. NBC_01738

ncbi_submitter: Technical University of Denmark


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan:Shizuoka; Atami; off Hatsushima Island

ncbi_isolation_source: deep-sea water

ncbi_organism_name: Pseudoalteromonas sp. MM1

ncbi_submitter: Uemura Lab, Department of Biological Sciences, Graduate School of Science, The University of Tokyo


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Great Lakes

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: China

ncbi_isolation_source: marine sediments

ncbi_organism_name: Roseicyclus sediminis

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Streptomyces sp. MJP52

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Alberta


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis ATCC 8503

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Tannerellaceae;g__Parabacteroides;s__Parabacteroides distasonis;x__Parabacteroides distasonis ATCC 8503


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: Hadeer Aly Ibrahim Aly Morgaan


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health, Department of Medical Sciences


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ellagibacter isourolithinifaciens


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Caldilineales bacterium

ncbi_submitter: South China University of Technology


ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium


ncbi_country: Malaysia: Eastern Peninsula

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Caspian Sea

ncbi_organism_name: Bordetella bronchiseptica M85/00/2

ncbi_submitter: JCVI


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Hoylesella timonensis

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium HUM_5


ncbi_isolation_source: urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea

ncbi_isolation_source: human stool

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0141

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: RESPOND-AbOne


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Dartmouth College


ncbi_country: China:Xinjiang; Gurbantunggut Desert

ncbi_isolation_source: bulk soil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: South Korea: Jeju

ncbi_isolation_source: larvae of insect

ncbi_organism_name: Microbacterium allomyrinae

ncbi_submitter: BioPS Co., Ltd.


ncbi_isolation_source: Foot ulcer

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3663

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3663


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: blood

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Symbiothrix sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Symbiothrix;x__unclassified Candidatus Symbiothrix;s__Candidatus Symbiothrix sp.


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella sp. SAL04196

ncbi_submitter: Zhejiang university


ncbi_country: Haiti

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Storrs; CT

ncbi_isolation_source: Hindgut contents

ncbi_organism_name: Dysgonomonas sp. HGC4

ncbi_submitter: University of Connecticut


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Denmark: Skive

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_isolation_source: Raw salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_submitter: FDA


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Mahidol University


ncbi_organism_name: Variovorax sp. V213

ncbi_submitter: Kyoto University


ncbi_country: Australia

ncbi_isolation_source: Casey Hospital

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Monash University


ncbi_assembly_name: Campylobacter jejuni CVM 41974 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41974

ncbi_submitter: FDA/CVM


ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. IMCC 30228

ncbi_submitter: Inha University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: GNS Science


ncbi_submitter: University of California at Davis


ncbi_country: China: Shatin

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Acinetobacter pseudolwoffii


ncbi_assembly_name: acinetobacter baumannii isolate  strainD

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: D

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of Bristol


ncbi_isolation_source: BLOOD


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10


ncbi_country: Colombia

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: China: Chengde potato field

ncbi_isolation_source: potato stem

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Hebei Academy of Agricultural and Forestry Sciences


ncbi_organism_name: Salmonella sp. 2021_1241

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: terrestrial

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: China: Hunan

ncbi_isolation_source: feces

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Toho University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: Rumen uncultured genome RUG13550

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: sludge from anammox bioreactor

ncbi_organism_name: Candidatus Brocadiaceae bacterium S225

ncbi_submitter: Radboud Universiteit Nijmegen

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;x__unclassified Candidatus Brocadiaceae;s__Candidatus Brocadiaceae bacterium S225


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: Rhizobium sp. BK619

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Chromohalobacter japonicus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: Hungary

ncbi_isolation_source: abscess

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: France: Bordeaux

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_country: USA:Auburn; Alabama

ncbi_isolation_source: diseased catfish

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: USDA


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia seminalis

ncbi_submitter: University of Michigan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Humisphaera sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 7082

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_country: Germany

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: UCSF


ncbi_country: New Zealand

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Mount Pinos; Los Padres National Forest; California

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Parolsenella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: PMEN

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mogibacterium timidum

ncbi_submitter: EMG


ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Poona


ncbi_isolation_source: human sample for infectious disease patient

ncbi_submitter: Department of Clinical Laboratory Science, Faculty of Health Care, Tenri Health Care University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Zhejiang university


ncbi_isolation_source: water tank

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Zhejiang University


ncbi_country: Bolivia: Aranjuez; La Paz

ncbi_isolation_source: Choqueyapu River

ncbi_submitter: University of Gothenburg


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0560

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_strain_identifiers: COPD L3a

ncbi_submitter: Chengdu University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: USA: Tattnal Co.; GA

ncbi_isolation_source: Texas millet

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_submitter: EMG


ncbi_country: Japan

ncbi_isolation_source: feces; 1 single-cell amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: bioBiome, Inc.


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: Seabed sludge

ncbi_organism_name: Streptomyces violaceoruber

ncbi_submitter: Shandong Academy of Medical Sciences


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: Technical University of Denmark


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Broad Institute


ncbi_submitter: Prince of Songkla University


ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Streptomyces ficellus

ncbi_strain_identifiers: NRRL 8067

ncbi_submitter: college of bioengineering


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Paraglaciecola sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: metagenome

ncbi_organism_name: Capnocytophaga sputigena


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Flavobacteriales bacterium UBA4110

ncbi_submitter: University of Queensland


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Columbia University Medical Center


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: secretion

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Corynebacterium sp. SFY-K9

ncbi_submitter: Guangdong Women and Children Hospital


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Rowley; Massachusetts

ncbi_isolation_source: untreated salt marsh sediment

ncbi_organism_name: Salaquimonas sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Algeria

ncbi_isolation_source: Dromedary milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Wuerzburg


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_AE_11

ncbi_organism_name: uncultured Dictyobacter sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Indonesia: Sulawesi Island; Lake Matano

ncbi_isolation_source: ferruginous lake sediment

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: DS-I Africa


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_submitter: McGill University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Tokyo


ncbi_isolate: AOP31_B2_surf _bin _30

ncbi_organism_name: Vreelandella alkaliphila

ncbi_strain_identifiers: AOP31_B2_surf _bin _30

ncbi_submitter: Genoscope


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Chengdu

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Jilin

ncbi_organism_name: Commensalibacter sp. W8133

ncbi_submitter: China Agricultural University


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Heidelberg University Hospital


ncbi_country: United Kingdom: Salisbury

ncbi_isolation_source: Vagina

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: UK Health Security Agency


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Ferruginibacter sp.


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_assembly_name: IMG-taxon 2615840642 annotated assembly

ncbi_organism_name: Acinetobacter sp. yr461

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Shigella flexneri K-227

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Brown University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_assembly_name: Rumen uncultured genome RUG13956

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-849

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Syntrophomonas sp. DTU019

ncbi_submitter: Technical University of Denmark


ncbi_country: India: Pirana landfill site; Ahmedabad; Gujarat

ncbi_isolation_source: Dumpsite

ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: GBRC


ncbi_isolation_source: Human fecal samples

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Marmota baibacina

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: University of Alberta


ncbi_isolate: FAECES

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: Campylobacter jejuni;FAECES

ncbi_submitter: LSHTM


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_country: Australia: Coldstream; Victoria

ncbi_isolation_source: Rural River

ncbi_organism_name: Campylobacter volucris

ncbi_submitter: Monash University


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Gifu University - Life Science Research Center - Division of Anaerobe Resear ch


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Dorea sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Queensland


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: Tulsa; Oklahoma

ncbi_isolation_source: retail chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Tulsa


ncbi_country: France: Libourne

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: USA: Tucson; Arizona

ncbi_isolation_source: Pleural fluid from renal transplant patient

ncbi_organism_name: Legionella tucsonensis

ncbi_submitter: Tel Aviv University


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-679

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: China: Shanghai

ncbi_isolation_source: other

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: USA: DE

ncbi_isolation_source: egg (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Korea: Gochang

ncbi_isolation_source: lake sediment

ncbi_organism_name: Cognatilysobacter lacus

ncbi_submitter: Hankyong National University


ncbi_assembly_name: freshwater MAG --- Umea2p1_bin-1050

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides stercoris


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: ETH Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Washington


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Enterobacter sp.


ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPHIGHO2_01_FULL_40_58


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Streptomyces sp. BBFR25

ncbi_submitter: University of Freiburg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: University of Liege


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG14070

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Frankiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Tel Aviv University


ncbi_organism_name: Kineococcus sp. SYSU DK015

ncbi_strain_identifiers: SYSU DK015

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Texas A&M University, School of Vet Med


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium CG_4_9_14_3_um_filter_35_16


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-PB2

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Streptomyces griseoloalbus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_assembly_name: Rumen uncultured genome RUG10495

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter kondonii

ncbi_submitter: Cornell University


ncbi_country: China: Shenzhen

ncbi_isolation_source: chicken

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of aberdeen


ncbi_organism_name: Streptomyces platensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Treponema socranskii

ncbi_submitter: The University of Hong Kong


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: The University of Melbourne