gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Geodermatophilus normandii

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


gtdb_representative: f

ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium sp. 1245852.3

ncbi_submitter: JCVI


ncbi_organism_name: Streptomyces sp. NPDC006510

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: New Delhi

ncbi_isolation_source: healthy skin

ncbi_organism_name: Dermacoccus sp. PE3

ncbi_submitter: Institute of Genomics and Integrative Biology


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1371

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangdong Province

ncbi_isolation_source: river water

ncbi_organism_name: Flectobacillus rivi

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_organism_name: Brachybacterium aquaticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Nova Scotia

ncbi_isolation_source: water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_assembly_level: Chromosome

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BMRO

ncbi_submitter: The University of Adelaide


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Holosporaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: marjoram

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Max Rubner-Institut


ncbi_assembly_name: LM77097 assembly

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Brevundimonas sp.


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: Left Flank

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Brazil: Seropedica

ncbi_isolation_source: Sugarcane field

ncbi_organism_name: Nitrospirillum viridazoti CBAmc

ncbi_strain_identifiers: CBAmC

ncbi_submitter: Embrapa


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: tomato roots

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: JLU


ncbi_country: China: Wuhan

ncbi_isolation_source: soil

ncbi_organism_name: Halomonas sp. HAL1

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: milk powder

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_isolation_source: laboratory

ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Science College, Shantou University


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Cutaneous

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: Institut Pasteur


ncbi_country: USA: Bloomington; INDIANA

ncbi_organism_name: Myxococcus xanthus

ncbi_submitter: ETH Zurich


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Catenulisporales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium glucuronolyticum

ncbi_submitter: US Food and Drug Administration

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_country: China: Hubei

ncbi_isolation_source: the kidney of Aristichthys nobilis

ncbi_organism_name: Aeromonas hydrophila

ncbi_strain_identifiers: Ah DBHS101

ncbi_submitter: Institute of Hydrobiology, Chinese Academy of Sciences


ncbi_organism_name: Methylobacterium guangdongense

ncbi_submitter: Guangdong Microbial Culture Collection Center


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: Rumen uncultured genome RUG10952

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangdong

ncbi_isolation_source: Swabs of feces

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Anhui

ncbi_submitter: University of Science and Technology of China


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Universite Laval


ncbi_assembly_name: Rumen uncultured genome RUG11164

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: China: Shuikoushan; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Desulfitobacterium hafniense

ncbi_submitter: South china normal university


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Faculty of Veterinary Medicine, Ankara University (FVMAU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: University of Milan


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CLS

ncbi_submitter: Cochin hospital


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Sphaerobacter thermophilus

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Haliea sp. E17

ncbi_submitter: Shandong University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Thioclava sp.


ncbi_organism_name: Lentzea sp. NPDC051213

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Russia: Kamchatka; Uzon Caldera

ncbi_isolation_source: thermophilic sediment from neutral hot spring

ncbi_organism_name: Acidithiobacillus thiooxidans

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Sri Lanka

ncbi_organism_name: Actinobacillus capsulatus DSM 19761

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli BIDMC 17B

ncbi_strain_identifiers: BIDMC 17B

ncbi_submitter: Broad Institute


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Aminobacterium sp. UBA5410

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonas syringae CC1544

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae CC1544


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: South Korea

ncbi_isolation_source: Seawater

ncbi_organism_name: Maribacter dokdonensis DSW-8

ncbi_submitter: Yonsei University


ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinik Tuebingen


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Technical University of Denmark


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG32

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_strain_identifiers: labscale reactor_MAG32

ncbi_submitter: TU Delft

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Campylobacter jejuni


ncbi_country: Germany: Freising

ncbi_organism_name: Mogibacterium kristiansenii

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Colombia

ncbi_isolation_source: Post surgical secretion

ncbi_organism_name: Staphylococcus aureus DAR5836


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Mycobacterium sp. SMC-17

ncbi_submitter: Samsung Medical Center


ncbi_country: China: Guangzhou

ncbi_isolation_source: lichi orchard soil

ncbi_organism_name: Trinickia sp. Y13

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: China: Hebei

ncbi_isolation_source: Mastitis Milk

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-150

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella sp. NW883

ncbi_submitter: Sichuan University


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_assembly_name: Rumen uncultured genome RUG13412

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Thermosipho melanesiensis

ncbi_submitter: University of Oslo


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: sediment

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Norway

ncbi_isolation_source: Fermented sausage; Norway

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Nofima


ncbi_country: Brazil: Mato Grosso

ncbi_isolation_source: lymph nodes

ncbi_submitter: Cuiaba University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: BCO Bacterial Genomes


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Candidatus Pseudoruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_country: South Korea: Chungnam

ncbi_isolation_source: center of the feces

ncbi_organism_name: Limosilactobacillus kribbianus

ncbi_submitter: ABS Research Support Center


ncbi_organism_name: Treponema socranskii

ncbi_submitter: EMG


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: Universiteit Gent


ncbi_country: Kazakhstan: Pavlodar

ncbi_isolation_source: suspension

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_country: Peru: Caraz; Ancash

ncbi_isolation_source: clinical specimen; blood

ncbi_organism_name: Bartonella bacilliformis Ver075

ncbi_submitter: Broad Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Bangladesh

ncbi_isolation_source: Frozen raw headless shell shrimp

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_name: CCUG 346 T

ncbi_organism_name: Neisseria cinerea

ncbi_strain_identifiers: CCUG 346 T

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Poland

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: USA: NY

ncbi_isolation_source: produce field drag swab

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: New York State Dept. of Health - Wadsworth Center


ncbi_country: India: Assam agricultural fields

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia sp. SJ98

ncbi_submitter: Institute of Microbial Technology,Chandigarh,INDIA


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M62794


ncbi_isolation_source: healthy weaning piglets

ncbi_organism_name: Limosilactobacillus reuteri I5007

ncbi_submitter: China Agricultural University


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus W75098


ncbi_organism_name: Cytobacillus kochii

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Leclercia adecarboxylata


ncbi_country: China

ncbi_isolation_source: heart

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_assembly_name: Rumen uncultured genome RUG12093

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-371

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Zurich


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Natronohydrobacter sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Alberta

ncbi_submitter: University of Calgary


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Salmonella sp. NW1017

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudoalteromonas rhizosphaerae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Su Dong


ncbi_assembly_name: freshwater MAG --- Ja_bin-1781

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Methylibium sp.


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG399

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Acidimicrobiia bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Aeromonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: IMG-taxon 2667527397 annotated assembly

ncbi_organism_name: Pseudomonas granadensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: India: Himachal Pradesh

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: HPLD

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Italy: Emilia Romagna

ncbi_isolation_source: caecal content

ncbi_organism_name: Helicobacter winghamensis

ncbi_submitter: University of Bologna


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Belem; PA

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: China: Tibet

ncbi_isolation_source: acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrivorans

ncbi_submitter: Central South University


ncbi_assembly_name: freshwater MAG --- MJ111018A_bin-779

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Vienna


ncbi_isolation_source: human stool

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1959

ncbi_submitter: Broad Institute


ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pretoria


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: uncultured Aggregatibacter sp.


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Zhangjiakou; Jiuliancheng Nur

ncbi_isolation_source: dried saline lake

ncbi_organism_name: Planctomonas psychrotolerans

ncbi_submitter: Hebei North University


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: VRFCWCF MRTB180

ncbi_country: India: Chennai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: VRFCWCF MRTB180

ncbi_submitter: VISION RESEARCH FOUNDATION, SANKARA NETHRALAYA


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW215-E1

ncbi_submitter: Arkin Lab


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: P111K BY

ncbi_submitter: Imperial College London


ncbi_country: Israel

ncbi_strain_identifiers: KPC 43

ncbi_submitter: TLVMC


ncbi_organism_name: Exiguobacterium acetylicum

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium acetylicum


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M80992

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus stercoris

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: USA: California

ncbi_isolation_source: skin swab

ncbi_organism_name: Paracholeplasma manati

ncbi_strain_identifiers: Oakley

ncbi_submitter: US FDA


ncbi_country: USA: IL

ncbi_isolation_source: organic soy

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_genome_category: derived from single cell

ncbi_organism_name: Sulfurimonas sp. SAG-AH-194-I05

ncbi_submitter: The Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Streptococcus canis

ncbi_submitter: University of Glasgow


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Listeria booriae

ncbi_submitter: University of Tennessee


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG12148

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Norway

ncbi_isolation_source: blood

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Limoges

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: DE

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Germany

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: MIT

ncbi_isolation_source: human stomach

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: MIT


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: University of Liverpool


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrmr

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Stool

ncbi_organism_name: Hathewaya massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Microcystis aeruginosa PCC 7941

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Pseudomonas sp. SAR267

ncbi_submitter: Vanderbilt University Medical Center


ncbi_organism_name: uncultured Leptolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_isolation_source: Caecum


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Zellenberg

ncbi_isolation_source: soil

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Malaya


ncbi_isolation_source: USA

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: University of Minnesota


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: France: Paris

ncbi_submitter: INSERM


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Pig feces

ncbi_submitter: Chulalongkorn University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_34_10


ncbi_organism_name: uncultured Pseudomonadota bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_strain_identifiers: CR 24

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Clostridioides difficile 6534

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_submitter: Monash University


ncbi_country: China: Yunnan Province

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Foshan University


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: China: Beijing

ncbi_isolation_source: milk from animal17

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Hebei University of Science & Technology


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. CCC2.2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Bielefeld

ncbi_isolation_source: rubber door sealing of a washing machine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bielefeld University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Mailhella sp.


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Desulfobacca sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Roseateles sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: NRRL BD-142

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada: Ottowa

ncbi_organism_name: Paenarthrobacter aurescens

ncbi_submitter: Emory University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1031433

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Variovorax sp. SCN 67-20

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter cinaedi


ncbi_country: Italy: Colle Umberto (TV)

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium botulinum D/C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Canada: Pictou County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic lake sediment

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Universidad de la Republica


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pennsylvania;Pittsburgh

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Portugal: Montesinho

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Aveiro


ncbi_country: Ireland

ncbi_isolation_source: surrface of cheese

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Cork insitute of Technology


ncbi_organism_name: Bordetella sp.

ncbi_submitter: Zhejiang University


gtdb_type_species_of_genus: t

ncbi_country: Japan: Arai-Hama; Miura Peninsula; Kanagawa

ncbi_isolation_source: coastal soil

ncbi_organism_name: Paraliomyxa miuraensis

ncbi_submitter: Nagoya University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum from endotrachea

ncbi_organism_name: Staphylococcus aureus M0579

ncbi_submitter: Broad Institute


ncbi_country: Mozambique

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Austria: Lake Sighartsteiner Weiher at Neumarkt am Wallersee

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Polynucleobacter sp. 73C-SIWE

ncbi_submitter: University of Innsbruck


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Apopatocola equi

ncbi_submitter: Quadram Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: University of Utah


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Huibei

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Cote d Ivoire: Abidjan

ncbi_isolation_source: University Hospital of Abidjan-Cocody

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pasteur Institut of Ivory Coast


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Stenotrophomonas rhizophila

ncbi_submitter: Institute of Botany, Jiangsu Province and Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- AM5_bin-1252

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Department of Microbiology, Graduate School of Medicine, Kyoto University


ncbi_organism_name: Veillonella atypica

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: SC


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: Mediterranean Sea

ncbi_organism_name: Hyphomonas sp.


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMT1-21

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolate: Isolate LA5_775

ncbi_isolation_source: Culture

ncbi_strain_identifiers: LA5 775;Isolate LA5_775

ncbi_submitter: inrae de tours

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Shelburne County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Nocardia sp. NPDC006044

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Comamonas sediminis

ncbi_submitter: Academy of National Food and Strategic Reserves Administration


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Stirling


ncbi_organism_name: Pseudomonas alloputida


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: PA

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_country: Austria:Vienna; General Hospital Vienna

ncbi_organism_name: Klebsiella pneumoniae IS53

ncbi_submitter: AIT


ncbi_organism_name: Oceanococcaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Tsukamurella tyrosinosolvens


ncbi_organism_name: Pantoea sp. 1B4

ncbi_submitter: Connecticut Agricultural Experiment Station


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus CHAP6049

ncbi_submitter: Broad Institute


ncbi_organism_name: Blautia schinkii DSM 10518

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia schinkii;x__Blautia schinkii DSM 10518


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7184

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7763


ncbi_organism_name: Mycoplasmoides gallisepticum str. F

ncbi_strain_identifiers: F

ncbi_submitter: University of Connecticut


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Alberta


ncbi_country: India: Kodaikanal

ncbi_isolation_source: Kombucha SCOBY

ncbi_organism_name: Komagataeibacter intermedius

ncbi_submitter: Tampere University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R212;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Russia: Primorsky Krai

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Federal Service on Customers’ Rights Protection and Human Well-Being Surveillance


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_country: Netherlands: Wageningen

ncbi_isolation_source: Methanogenic sludge blanket reactor

ncbi_organism_name: Desulfofundulus sp. TPOSR

ncbi_strain_identifiers: TPOSR

ncbi_submitter: Wageningen University


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_strain_identifiers: B294;Neisseria meningitidis


ncbi_country: Canada: Quebec; Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Paenibacillus sp. Root52

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfosporosinus sp. UBA5775

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Italy

ncbi_isolation_source: Fermented sourdough

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella oxytoca


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: China

ncbi_isolation_source: prostatic fluid

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Singapore

ncbi_isolation_source: rectal

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemella haemolysans

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Clostridiaceae bacterium UBA5483


ncbi_country: USA: Maryland

ncbi_isolation_source: peri-anal swab

ncbi_organism_name: Klebsiella pneumoniae 7699

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: France: APHM

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7060

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli


ncbi_country: Switzerland: Berne

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Lucky Strike hydrothermal vent field

ncbi_organism_name: Hippea jasoniae

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG13502

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_submitter: college of life science


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Malaysia

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: India: Vatva; Ahmadabad

ncbi_isolation_source: Heavy metal contaminated soil

ncbi_organism_name: Brucella oryzae

ncbi_submitter: Charotar University of Science & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Czech Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Germany

ncbi_isolation_source: Gut

ncbi_strain_identifiers: Isolate-114 (HZI)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-114 (HZI)


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Xiamen University


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: laboratoire des substances bioactives


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Natural Sciences Research Institute, University of the Philippines Diliman


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Fujian

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: sewage sludge

ncbi_organism_name: Desulfomonile tiedjei DSM 6799

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: female infant ascitic fluid

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Tang lab

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_country: China

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Switzerland: Basel

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: ETH Zurich


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Austwickia sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Nocardia altamirensis NBRC 108246

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: New York City

ncbi_isolation_source: BAL

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Undibacterium squillarum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Peru

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pseudomonas poae

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: FDA/CDC


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin30

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin30

ncbi_submitter: Monash University


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_country: USA: Ocean Beach; California

ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Venezuela: Carrao River

ncbi_isolation_source: plant surface

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Abengoa Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coprobacillus sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Balneolaceae bacterium UBA4522

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Balneolota;c__Balneolia;o__Balneolales;f__Balneolaceae;x__unclassified Balneolaceae;s__Balneolaceae bacterium UBA4522


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolate: Milk cow fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Milk cow fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: GBBC 1072

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_organism_name: Flagellimonas aurea

ncbi_submitter: Tang lab


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: NABI 308

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_isolation_source: terrestrial

ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_name: IMG-taxon 2651870364 annotated assembly

ncbi_organism_name: Lachnospiraceae bacterium KHCPX20

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Clostridium sp. ATCC 25772

ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;x__unclassified Clostridium;s__Clostridium sp. ATCC 25772


ncbi_country: Australia

ncbi_isolation_source: dairy

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: FRR B 2943

ncbi_submitter: Queensland Health


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Radboud University


ncbi_country: Brazil: Manicor; AM

ncbi_isolation_source: tree

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: OR

ncbi_isolation_source: Market Swine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59609F

ncbi_submitter: FDA


ncbi_country: Chile: Santiago

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Firmicutes bacterium ADurb.Bin262

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium ADurb.Bin262


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Salinibacter ruber

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Salmonella sp. NW750

ncbi_submitter: Sichuan University


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Wolbachia endosymbiont of Rhagoletis indifferens

ncbi_strain_identifiers: wInd

ncbi_submitter: University of Notre Dame


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Parvicellaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Chryseotalea sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Endomicrobiia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: SAHMRI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus agalactiae FSL S3-102

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf116

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Streptococcus suis

ncbi_submitter: IZSM-Portici


ncbi_country: Bangladesh

ncbi_isolation_source: water sample

ncbi_organism_name: Vibrio cholerae O1 str. EDC-022

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. EDC-022


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolate: clinical strain from anonymous patient of Limoges Hospital

ncbi_isolation_source: blood culture

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: INRA Toulouse


ncbi_organism_name: Desulfovermiculus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae SPAR48


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China

ncbi_isolation_source: chicken carcass

ncbi_submitter: China National Center for Food Safety Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_assembly_name: Rumen uncultured genome RUG12063

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0115

ncbi_submitter: Broad Institute


ncbi_country: USA: South Carolina

ncbi_isolation_source: Low salinity river system

ncbi_organism_name: Vibrio sp. 05-20-BW147

ncbi_submitter: Active Teaching NextGenSequencing Group (GCAT-SEEK)


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Zhejiang

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Vitreoscilla stercoraria DSM 513

ncbi_strain_identifiers: DSM 513

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: AAFC


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Israel

ncbi_isolation_source: Dead Sea

ncbi_organism_name: Chromohalobacter israelensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Rhodococcus erythropolis


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_isolation_source: Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_assembly_name: MAA 4293 version 1

ncbi_country: USA

ncbi_organism_name: Mycobacterium avium 05-4293

ncbi_submitter: National Animal Disease Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;x__Mycobacterium avium 05-4293


ncbi_assembly_name: gdodcwi02 v01

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii MRSN 3527

ncbi_strain_identifiers: MRSN 3527

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii MRSN 3527


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Scardovia inopinata

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis R508

ncbi_submitter: Washington University


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: Venezuela

ncbi_organism_name: Wolbachia endosymbiont of Mansonella ozzardi

ncbi_submitter: New England Biolabs


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Rhodococcus tukisamuensis NBRC 100609

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerpen


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: University of Chicago


ncbi_country: Spain: Madrid

ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus cuniculi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Nocardioides sp. PD653

ncbi_submitter: Microbiology, Applied Biology and Chemistry, Tokyo university of Agriclture


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Morrow County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1F9

ncbi_submitter: Oregon State University


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Baotou; InnerMongolia

ncbi_isolation_source: cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Qingdao Agricultural University


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Caulobacter sp. CCNWYY153

ncbi_submitter: Northwest A&F University


ncbi_submitter: AAFC


ncbi_country: Norway: Trondheim fjord

ncbi_isolation_source: sponge

ncbi_organism_name: Streptomycetaceae bacterium MP113-05

ncbi_submitter: Norwegian University of Science and Technology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus durans

ncbi_submitter: SC


ncbi_country: Brazil: Ibiuna

ncbi_isolation_source: Spinach

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Sao Paulo


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen


ncbi_country: Russia: St.Petersburg

ncbi_isolation_source: skin

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Mycolicibacterium llatzerense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Japan

ncbi_isolation_source: cecal feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oribacterium sp.


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus garvieae NBRC 100934

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Streptococcus ruminicola

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Marques de Valdecilla University Hospital


ncbi_organism_name: Bacillus sp. SIMBA_005

ncbi_submitter: SIMBA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SIMBA_005


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Labrys okinawensis

ncbi_submitter: Gyeongsang national university


ncbi_organism_name: Brevundimonas faecalis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Armatimonadetes bacterium 55-13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium 55-13


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_isolate: metabat2_XCR1_HET_6747_bwa.118 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_XCR1_HET_6747_bwa.118 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Pseudomonadota bacterium


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: NY

ncbi_isolation_source: produce field drag swab

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Sweden

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus porcinus

ncbi_submitter: SC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: EMG


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology