ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_submitter: The University of Texas at Dallas


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


gtdb_representative: f

ncbi_country: Canada: London

ncbi_isolation_source: parent strain CV601 collected from dairy manure

ncbi_organism_name: Escherichia coli

ncbi_submitter: Western University


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces sp. NPDC014889

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Queensland


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFCSPLOWO2_01_FULL_48_20


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert bare soil

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Alberta


ncbi_assembly_level: Complete Genome

ncbi_country: China: Qinghai province; Yushu; Hoh Xil

ncbi_organism_name: Streptococcus chenjunshii

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute for Communicable Disease Control and Prevention

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Lachnospiraceae bacterium NK4A179

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gemmiger qucibialis


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Weissella confusa


ncbi_country: France

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: L'Oreal


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Cellvibrionales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Candidatus Obscuribacterales bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__unclassified Candidatus Obscuribacterales;s__Candidatus Obscuribacterales bacterium


ncbi_assembly_name: freshwater MAG --- Loclat_bin-15874

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S21

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Bacillus safensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Phocaeicola coprophilus CAG:333

ncbi_submitter: DTU


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridium paraputrificum


ncbi_organism_name: Streptomyces sp. NBC_00496

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG13524

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Natronospira sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Microbacterium fluvii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Brazil: Pocon Pantanal

ncbi_isolation_source: soil

ncbi_submitter: Federal University of Mato Grosso


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Kazan Federal University


ncbi_country: Japan

ncbi_isolation_source: human subcutaneous abscess

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Microbiology, Juntendo University


ncbi_organism_name: Neisseria sp. P0009.S010

ncbi_submitter: Rochester Institute of Technology


ncbi_country: USA: California

ncbi_isolation_source: jejunum

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Phocaeicola abscessus

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Costa Rica

ncbi_organism_name: Candidatus Pantoea edessiphila

ncbi_strain_identifiers: SoET

ncbi_submitter: Ohio State University


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Michigan State University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_submitter: University of Galway


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Streptomyces sp. NPDC057496


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SC


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Candidatus Enterousia excrementavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;s__Candidatus Enterousia excrementavium


ncbi_country: Kenya

ncbi_organism_name: Lachnospiraceae bacterium UBA5881

ncbi_submitter: University of Queensland


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Sweden

ncbi_organism_name: Deinococcus aquatilis DSM 23025

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Kyungpook National University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 1528

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: jiangnan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_assembly_level: Chromosome

ncbi_isolation_source: Meat from pig - fresh

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_country: Canada: Alberta

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Nesterenkonia alkaliphila

ncbi_submitter: Huzhou University


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Copromonas (nom. illeg.);s__Candidatus Copromonas avistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Copromonas (nom. illeg.);s__Candidatus Copromonas avistercoris (nom. illeg.)


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYB12_FULL_58_10


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp. TM05-53

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. TM05-53


ncbi_isolation_source: colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Coprobacillus sp. AF36-10BH


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Russia: Yakutia

ncbi_isolation_source: milk

ncbi_submitter: Federal Research Center for Animal Husbandry named after Academy Member L.K. Ernst


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Neisseria dentiae

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Enterocloster sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Massilimicrobiota timonensis

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_country: Canada: Vancouver

ncbi_isolation_source: maternal vaginal swab of a 35 year-old woman fluid on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Turkey

ncbi_organism_name: Xenorhabdus bovienii

ncbi_submitter: Ordu University


ncbi_organism_name: Segatella oulorum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Germany: Mannheim

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: Hera General Hopsital; patient

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Igenbio, Inc


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F23353


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Caenarcanales bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;c__Vampirovibriophyceae;o__Candidatus Caenarcanales;x__unclassified Candidatus Caenarcanales;s__Candidatus Caenarcanales bacterium


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_organism_name: Variovorax sp. VRV01


ncbi_country: Germany: Goettingen

ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Medical Center Goettingen


ncbi_organism_name: Salmonella enterica subsp. enterica


ncbi_country: China

ncbi_organism_name: Actinobacteria bacterium YIM 96077

ncbi_submitter: Yunnan institute of microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__unclassified Actinomycetes;s__Actinobacteria bacterium YIM 96077


ncbi_organism_name: Roseburia sp. AF12-17LB

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_isolation_source: Respiratory

ncbi_organism_name: Abiotrophia sp. HMSC24B09

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: [Pasteurella] aerogenes

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


ncbi_country: Iran: Fars

ncbi_isolation_source: wheat

ncbi_organism_name: Xanthomonas translucens pv. undulosa

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. undulosa


ncbi_isolation_source: sputum from CF patient

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: Staphylococcus aureus M0994

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: sputum

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Guizhou University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institut Pasteur, Universite Paris Cite


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Lake Erie

ncbi_organism_name: Microcystis sp. LE19-388.1G


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Desulfovibrio fairfieldensis


ncbi_organism_name: Vannielia sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: uncultured Desulfocurvus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Polaromonas sp.


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Mycobacterium sp. Lab-001

ncbi_submitter: Tsinghua university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: bacterium NLAE-zl-P430

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;x__unclassified Candidatus Marinacidobacterales;s__Candidatus Marinacidobacterales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_country: India

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Kenya

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Masinde Muliro University of Science and Technology


ncbi_country: United Kingdom

ncbi_organism_name: Mycoplasmopsis caviae

ncbi_submitter: Institute of Microbiology


ncbi_country: Japan:Ibaraki;Lake Kasumigaura

ncbi_isolation_source: lake water

ncbi_organism_name: Dolichospermum planctonicum

ncbi_submitter: National Institute for Environmental Studies


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: China: Dexing; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: South china normal university


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 9

ncbi_submitter: University of Siena


ncbi_submitter: Southwest Medical University


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Streptomyces pratensis

ncbi_submitter: Memorial University of Newfoundland


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0192

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: Russia: Tver

ncbi_isolation_source: Human feces

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: The Vavilov Insitute of General Genetics


ncbi_country: USA: Oklahoma

ncbi_organism_name: Sphingopyxis sp. OAS728

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Salmonella sp. NW1189

ncbi_submitter: Sichuan University


ncbi_country: USA: Memphis; TN

ncbi_isolation_source: stool sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Poland: Limanowa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_assembly_name: freshwater MAG --- Loc090721-4m_bin-0959

ncbi_organism_name: uncultured Cytophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: France

ncbi_isolation_source: Minced meat

ncbi_submitter: Anses


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhizobium sp. Leaf383

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Chile

ncbi_submitter: Universidad Autonoma de Chile


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Priestia sp. YIM B13552

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Priestia;x__unclassified Priestia;s__Priestia sp. YIM B13552


ncbi_country: Brazil

ncbi_isolation_source: Flock Environment (Gallus gallus Broilers)

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: ULBRA


ncbi_country: Sri Lanka: Colombo

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Isolate 01;Patient 09

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: URMITE


ncbi_country: USA: CA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-110-08_S4_C2

ncbi_submitter: IGS


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Shandong Province

ncbi_isolation_source: feces

ncbi_organism_name: Corynebacterium lujinxingii

ncbi_submitter: China CDC


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_organism_name: Brevundimonas sp. 1080


ncbi_organism_name: uncultured Massilia sp.


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Roseateles sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Naning

ncbi_isolation_source: rhizosphere of green pepper

ncbi_organism_name: Lysobacter enzymogenes

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: Centre of Biosciences of the Slovak Academy of Sciences


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0003

ncbi_submitter: University of Liege


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Qingdao Agricultural Universtiy


ncbi_country: USA: NY

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Treponema porcinum

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Turkey: Mugla

ncbi_isolation_source: Fish Farm

ncbi_organism_name: Pseudomonas arcuscaelestis

ncbi_submitter: Erciyes University


ncbi_assembly_name: SOAPdenovo

ncbi_country: China

ncbi_isolation_source: grown in culture and sent on a short-term space flight

ncbi_organism_name: Pseudomonas aeruginosa LCT-PA220

ncbi_submitter: BGI Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Dairy Farm; Merseyside; UK

ncbi_organism_name: Treponema phagedenis

ncbi_submitter: University of Liverpool


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Technical University of Denmark


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_submitter: University of Wyoming


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp5 AA66

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp5 AA66

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: MI

ncbi_isolation_source: cow

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: ocular secretion

ncbi_organism_name: Shewanella sp. Sh95

ncbi_submitter: Instituto de Investigaciones en Microbiologia y Parasitologia Medica (UBA/CONICET)


ncbi_country: Czech Republic

ncbi_isolation_source: chicken meat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: New Zealand

ncbi_isolation_source: peach

ncbi_organism_name: Pseudomonas sp. ICMP 564

ncbi_strain_identifiers: ICMP 564

ncbi_submitter: New Zealand Institute for Plant & Food research


ncbi_organism_name: Komagataeibacter europaeus LMG 18494

ncbi_submitter: Vital-IT - Swiss Institute of Bioinformatics


ncbi_country: Malaysia

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Malaya


ncbi_isolation_source: blood

ncbi_organism_name: Sanguibacter inulinus

ncbi_submitter: King's College London


gtdb_type_species_of_genus: t

ncbi_country: China: Chengdu

ncbi_organism_name: Entomohabitans teleogrylli

ncbi_submitter: Sichuan University


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Respiratory

ncbi_organism_name: Pseudomonas sp. HMSC16B01

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: SciBear LLC


ncbi_assembly_name: freshwater MAG --- Ja2_bin-0368

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_isolation_source: sewage

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11110

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Italy

ncbi_isolation_source: twig

ncbi_organism_name: Pseudomonas avellanae CRAFRUed2

ncbi_submitter: CRA


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: BGI


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: river sediment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: NSU Genome Research Institute (NGRI), North South University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 119 (4-6879578)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 119 (4-6879578)


ncbi_organism_name: Streptomyces sp. NPDC093065

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Tomato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: RDA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG10576

ncbi_organism_name: Ruminococcus flavefaciens


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Streptomyces hygroscopicus


ncbi_country: South Korea: Sancheong district; Gyeongsang province

ncbi_isolation_source: broken rice

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Flavobacteriales bacterium UBA7519

ncbi_submitter: University of Queensland


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Fudan University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0692

ncbi_submitter: Broad Institute


ncbi_country: India: Delhi

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Raineya sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_submitter: INRA/CNRS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CN18


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Vibrio barjaei

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Pantoea vagans

ncbi_submitter: EMG


ncbi_organism_name: Edwardsiella piscicida

ncbi_submitter: USDA ARS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_isolate: AOP25_F2_surf _bin _14

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP25_F2_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: Hydrogenibacillus schlegelii

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;f__Bacillales Family X. Incertae Sedis;g__Hydrogenibacillus;s__Hydrogenibacillus schlegelii


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Botrimarina mediterranea

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_organism_name: Salmonella sp. NW516

ncbi_submitter: Sichuan University


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Veterinary Science Hannover

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Xanthomarina sp.


ncbi_organism_name: uncultured bacterium


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_country: USA: National Naval Medical Center; Bethesda; MD

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii Naval-57

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangzhou

ncbi_isolation_source: ZXC

ncbi_submitter: General Hospital of Southern Theatre Command of PLA


ncbi_organism_name: Klebsiella sp. 91970

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Microbulbifer sp. 2304DJ12-6

ncbi_submitter: Hannam University


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Korea: Geonggi

ncbi_isolation_source: kimchi (fermented food)

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Korea Food Research Institute


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pandoraea fibrosis

ncbi_submitter: LM-UGent


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Achromobacter mucicolens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_assembly_name: IMG-taxon 2718217650 annotated assembly

ncbi_organism_name: Pseudoxanthomonas wuyuanensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-7m-b_bin-382

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas sp.


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine metagenome


ncbi_country: Switzerland

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Zurich


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Solitalea sp. GCM10023251

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Tang lab


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-020-07_S3_C2

ncbi_submitter: IGS


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: INTA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: RESPOND-AbOne


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: USA

ncbi_isolation_source: intestinal contents

ncbi_submitter: Iowa State University College of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Helicobacter hepaticus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa

ncbi_organism_name: Photorhabdus noenieputensis

ncbi_submitter: Northeastern University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Chitinispirillaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Streptomyces sp. NPDC007346

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neglectibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea: Jeju

ncbi_isolation_source: soil inside a natural cave

ncbi_organism_name: Prescottella subtropica

ncbi_submitter: Jeju National University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bartonella fuyuanensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: adult honey bee queen gut

ncbi_organism_name: Bombella sp. ESL0387

ncbi_submitter: University of Lausanne


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Phycisphaerales bacterium UBA2507

ncbi_submitter: University of Queensland


ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Colon

ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_country: China: Bejing

ncbi_isolation_source: Anus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Cyanobacteria bacterium P01_G01_bin.39

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_G01_bin.39


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: kennel

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Canada: Langley

ncbi_isolation_source: Ixodes pacificus

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: University of Regina


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerovibrio sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Intestinimonas timonensis


ncbi_submitter: University of Nottingham


ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: North South University


ncbi_organism_name: Spiroplasma sp. hy2

ncbi_submitter: Texas A&M University


ncbi_organism_name: Alistipes inops


ncbi_organism_name: Aureibaculum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Christensenellaceae bacterium


ncbi_strain_identifiers: Brem 166

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Mozdok;x__Leptospira kirschneri serovar Mozdok str. Brem 166


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 314

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: SNUC 5359

ncbi_submitter: University of Calgary


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture


ncbi_submitter: The University of Hong Kong


ncbi_country: Poland

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: China: Harbin

ncbi_isolation_source: seed

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: School of life science


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: China: Anhui

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Sweden

ncbi_isolation_source: gut

ncbi_submitter: DTU


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira borgpetersenii;x__Leptospira borgpetersenii serovar Javanica;x__Leptospira borgpetersenii serovar Javanica str. MK146


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: China: Sichuan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii AB_1649-8

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: India:East Rathong Glacier; Sikkim

ncbi_isolate: water

ncbi_isolation_source: stream water

ncbi_organism_name: Arthrobacter sp. ERGS1:01

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Fecal samples from a 12-year-old male koala named Zagget

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium Zag_111


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Providencia sp. B2

ncbi_strain_identifiers: NDM34 B2

ncbi_submitter: National University Hospital


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Halomonas salina


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: South Korea

ncbi_isolation_source: ATCC

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SeoulNationalUniversity


ncbi_isolation_source: Spartina alterniflora (smooth cordgrass) detritus collected from the southeastern US salt marshes off Skidaway Island; GA

ncbi_organism_name: Citreicella sp. SE45

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: IMG-taxon 2663762751 annotated assembly

ncbi_organism_name: Glycomyces harbinensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Algoriphagus sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Methylovirgula sp.

ncbi_submitter: EMG


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Veillonella sp.


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P11P

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: blood sample from patient with bacteremia

ncbi_submitter: University of Maryland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus CIG1524


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Exiguobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__environmental samples;s__uncultured Exiguobacterium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea:Busan

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Pusan National University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Agrobacterium tumefaciens


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Italy: Europe

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: cBio Corp


ncbi_organism_name: Nocardiopsis kunsanensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_isolation_source: The Red Sea

ncbi_organism_name: Sulfitobacter sp. KE33

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Blautia producta

ncbi_strain_identifiers: DSM 935

ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas sp. FP2254

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Pseudomonas sp. P2757

ncbi_submitter: Masaryk University


ncbi_organism_name: uncultured Anaerovorax sp.


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country


ncbi_organism_name: uncultured Haliscomenobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Arsenophonus sp. NC-WZS1-MAG3

ncbi_submitter: Northwest A&F University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Iowa State University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: Georgia

ncbi_isolation_source: freshwater lake mesocosm spiked with pig7 feces day 7

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella cibaria

ncbi_submitter: World Institute of Kimchi


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Atopobium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Roseibium sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Roseococcus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: EMG


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Spain: Madrid

ncbi_organism_name: Escherichia coli

ncbi_submitter: IRYCIS


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Pauljensenia sp. 20925_1_34

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Enterobacter cloacae complex sp.6730764

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6730764


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Gungdong

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Peribacillus sp. NPDC097895

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mycetocola manganoxydans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Anaeroarcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Thailand: Thung Chang

ncbi_organism_name: Puniceicoccales bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CO

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: Candidatus Curtissbacteria bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;x__unclassified Candidatus Curtissbacteria;s__Candidatus Curtissbacteria bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: ISI 842

ncbi_isolate: ISI 842

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: ISI 842

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_country: China: Zhuhai

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinan University


ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Georgia


ncbi_country: China: Hainan

ncbi_isolation_source: Baked product:food poisoning

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Saudi Arabia: Makkah

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: Biopesticide Delfin

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Zurich


ncbi_country: South Africa: Gauteng

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_country: China: Yunnan Province

ncbi_isolation_source: hot spring

ncbi_organism_name: Azospirillum thermophilum

ncbi_submitter: Henan Normal University


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_country: South Korea: Bukjeju

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_isolation_source: Ajwan cumin seeds

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_country: Italy

ncbi_organism_name: Microbacterium sp. AG790

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Amycolatopsis sp. SB7-3

ncbi_submitter: Chulalongkorn University


ncbi_country: United Kingdom

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: USDA-ARS


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Colombia: Medellin

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Italy: Rome

ncbi_isolation_source: blood culture

ncbi_submitter: Sapienza University of Rome


ncbi_country: Italy: Elba

ncbi_isolate: EB

ncbi_isolation_source: nitrite oxidizing enrichment from marine coastal surface sediments

ncbi_organism_name: Candidatus Nitronauta litoralis

ncbi_strain_identifiers: EB

ncbi_submitter: Division of Microbial Ecology


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Priestia endophytica

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Arthrobacter sp. Marseille-P9274

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: sediment near the Kiel Fjord

ncbi_organism_name: Rhodopirellula baltica SH28

ncbi_submitter: Microbial Interactions in MArine Systems (MIMAS)


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Enterorhabdus sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 2 days after first rain event (91mm)

ncbi_organism_name: Chloroflexi bacterium 13_1_40CM_4_65_16

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium 13_1_40CM_4_65_16


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-2871

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human stool

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Rhodovulum sp. YNF3179

ncbi_submitter: Shangdong University at Weihai


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Succinivibrio sp.


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Shandong University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseriaceae bacterium

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: uncultured Rhodohalobacter sp.


ncbi_isolate: Acidobacteria sp. RBC039

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_strain_identifiers: Acidobacteria sp. RBC039

ncbi_submitter: UNIVERSITY OF WATERLOO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA786

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__unclassified Bacillales;s__Bacillales bacterium UBA786


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: affine MC_78

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacterium sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: [Clostridium] nexile


ncbi_country: Germany: Salemer Moor

ncbi_isolation_source: moss

ncbi_organism_name: Mycolicibacterium sphagni

ncbi_submitter: Uppsala University


ncbi_country: USA

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: IRHS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Enterorhabdus sp.


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Russian Research Anti-Plague Institute Microbe