ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Knoxville; TN

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_assembly_name: BSN42 Closure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


gtdb_representative: t

ncbi_organism_name: Cyanobacteria bacterium P01_D01_bin.44

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_D01_bin.44


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter soli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: Colombia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Alianza científico - tecnológica Nucleosensor-TB


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Chryseobacterium sp.


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: uncultured Thalassolituus sp.


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Arenibacter sp. ARW7G5Y1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_isolate: PURPLELP

ncbi_organism_name: Candidatus Sedimenticola sp. PURPLELP

ncbi_strain_identifiers: PURPLELP

ncbi_submitter: University of Vienna


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Brazil: Parana State

ncbi_isolation_source: blood bag

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Oswaldo Cruz Foundation (Fiocruz)


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Paucimonas sp.

ncbi_submitter: Colorado State University


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: deep-sea hydrothermal vent sediment

ncbi_organism_name: Psychrobacter piscatorii

ncbi_submitter: Third Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: PMEN

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: China

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Zhujiang Hospital, Southern Medical University


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Czech Republic

ncbi_organism_name: Escherichia coli

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal: Oporto

ncbi_isolation_source: Raw-frozen dog food

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Spain: Andratx Harbor; Mallorca Island; Balearic Islands

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Loktanella sp. 3ANDIMAR09

ncbi_submitter: Univesitat de les Illes Balears (UIB)


ncbi_country: Japan

ncbi_isolation_source: tracheal secretions

ncbi_submitter: Toho university


ncbi_assembly_name: freshwater MAG --- LJ_bin-4696

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_country: Switzerland:Lake Cadagno

ncbi_isolation_source: Lake Cadagno chemocline

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA:New York City

ncbi_isolation_source: New York City MTA subway

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Sporolactobacillaceae;g__Sporolactobacillus;s__Sporolactobacillus vineae;x__Sporolactobacillus vineae DSM 21990 = SL153

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_isolation_source: banana wilt

ncbi_strain_identifiers: NCPPB 2005

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas vasicola;x__Xanthomonas vasicola pv. musacearum;x__Xanthomonas vasicola pv. musacearum NCPPB 2005


ncbi_isolation_source: cold seep

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Denmark

ncbi_isolation_source: sheep

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 61:-:1,5,7


ncbi_isolation_source: feces

ncbi_organism_name: Roseburia sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: SC


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Flavonifractor sp.


ncbi_country: Australia

ncbi_isolation_source: Clinical Lab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: La Trobe University


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: BDSA

ncbi_submitter: University of Dhaka


ncbi_country: China

ncbi_organism_name: Agromyces aurantiacus

ncbi_refseq_category: reference genome


ncbi_country: USA: UC Davis Medical Center; Davis; Ca

ncbi_organism_name: Escherichia coli

ncbi_submitter: UC Davis


ncbi_organism_name: Agrobacterium sp. O3.4

ncbi_submitter: Julius Kuehn-Institut, Federal Research Centre for Cultivated Plants (JKI)


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Russia: Nizhniy Novgorod

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 44:z4,z23:-


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-25d

ncbi_strain_identifiers: Hp P-25d

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Psychrobacter sp. bablab_jr012


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Streptomyces sp. CC302I

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus USA_12

ncbi_submitter: Broad Institute


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Zestomonas thermotolerans


ncbi_country: Spain: Galicia; Carnota municipality

ncbi_isolation_source: Crude-oil-contaminated intertidal sand sample

ncbi_organism_name: Pseudomonas abyssi

ncbi_submitter: University of Balearic Islands

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: maxillary sinus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: CIDICS-UANL


ncbi_organism_name: Paenibacillus macerans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Plantibacter auratus

ncbi_submitter: Chenggong Campus of Yunnan University


ncbi_organism_name: Devosia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: Monash University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Kitasatospora sp. NPDC056184

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Enterococcus sp. DIV0213j

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_assembly_name: freshwater MAG --- KTt_bin-2244

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_country: Japan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Comamonas sp. MYb396

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Pseudomonas sp. PWP3-1b2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Hopital Bicetre


ncbi_country: Ecuador

ncbi_isolation_source: broncoalveolar lavage

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: UAEM


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Streptomyces chattanoogensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella sp. CLA-ER-H7

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Bristol


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Hessaraghatta suburban village; Bengaluru North taluk; Karnataka

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Ethiopia: Tigray; Central Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_organism_name: Staphylococcus capitis


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: France: Provence-Alpes-Cote d Azur; Chateaurenard

ncbi_isolation_source: bulk soil

ncbi_submitter: Universite de Moncton

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas chlororaphis group;s__Pseudomonas chlororaphis;sb__Pseudomonas chlororaphis subsp. aureofaciens


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0069

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Dept of Clinical Microbiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Tiruvallur

ncbi_organism_name: Mycobacterium tuberculosis H2438


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: University of Michigan Medical School


ncbi_country: China: Henan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Hong Kong: Telegraph Bay

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Glutamicibacter sp. JL.03c

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. K03

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: France: Vaucluse

ncbi_isolation_source: pasteurized carrot

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: INRA C3

ncbi_submitter: TU Muenchen


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Enterocloster clostridioformis


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Maribacter sp. UBA4516

ncbi_submitter: University of Queensland


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG10514

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Chile: Region de Aysen

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Thalassolituus sp. UBA675


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_assembly_name: Rumen uncultured genome RUG11143

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10859

ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas sobria

ncbi_submitter: Institut d'Investigacio Biomedica Sant Pau


ncbi_country: China: Beijing

ncbi_isolation_source: Ear swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Sakha

ncbi_isolation_source: permafrost

ncbi_organism_name: Clostridium algoriphilum

ncbi_submitter: University of Zurich


ncbi_organism_name: Bartonella pachyuromydis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Delftia lacustris


ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter suis

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_country: Spain

ncbi_submitter: Universite Laval


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0000

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Hansschlegelia beijingensis

ncbi_submitter: IBPM RAS


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Salmonella sp. SAL4455

ncbi_submitter: Zhejiang university


ncbi_organism_name: Salmonella sp. SKLX108654


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Vibrio plantisponsor

ncbi_submitter: WenZhou Medical University


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Maonan District; Maoming City; Guangdong Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Sphingomonas lycopersici

ncbi_submitter: Guangdong Institute Of Microbiology


ncbi_organism_name: Marinilactibacillus kalidii

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Intestinimonas sp.


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR30921

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Philippines: Nag-aso Hot Spring; Manito; Albay

ncbi_isolation_source: geothermal lake

ncbi_organism_name: Anoxybacteroides rupiense

ncbi_submitter: University of the Philippines Los Banos


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0403

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Northeastern University


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_country: China: Sichuan

ncbi_isolation_source: lung

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_country: Spain: Alicante

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudorhizobium pelagicum

ncbi_submitter: University Miguel Hernandez


ncbi_assembly_name: Rumen uncultured genome RUG504

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: other

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: Greece:Thermopyles geothermal spring

ncbi_isolation_source: geothermal water

ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Thessaly


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: The First Hospital of Jilin University


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Viet Nam:Thai Binh

ncbi_isolation_source: human stool

ncbi_submitter: Osaka Institute of Public Health


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA: Boston

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. PU10

ncbi_submitter: MicroLife Solutions


ncbi_country: Spain: Mediterranean Sea

ncbi_isolation_source: Seawater

ncbi_organism_name: Alteromonas lipotrueae

ncbi_submitter: Mediterranean Institute for Advanced Studies (IMEDEA)


ncbi_country: Denmark

ncbi_isolation_source: pharynx

ncbi_organism_name: Mannheimia cairinae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UC San Diego


ncbi_country: Russia: Moscow

ncbi_isolation_source: soft tissue abscess

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_submitter: Harbin Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 62:z36:-;x__Salmonella enterica subsp. arizonae serovar 62:z36:- str. RKS2983


ncbi_country: Belgium

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)


ncbi_isolation_source: blood

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Vellozia epidendroides specimens

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_country: India

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: USA: OH

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Australia: Melbourne

ncbi_organism_name: Serratia nevei

ncbi_submitter: Monash University


ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: IRRI


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: Central African Republic: Gamboula

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. CA-230715

ncbi_submitter: Technical University of Denmark


ncbi_country: Tunisia

ncbi_isolation_source: seafood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ANSES


ncbi_assembly_name: IMG-taxon 2616644807 annotated assembly

ncbi_organism_name: Desulfobacula phenolica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: Faeces


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aminobacter sp. BA135

ncbi_submitter: INTECH


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: IMG-taxon 2675903217 annotated assembly

ncbi_organism_name: Myroides phaeus


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0042

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Dermabacter sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Campylobacter showae


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Enterobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alkaliphilus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Kyungpook National University


ncbi_organism_name: uncultured Sulfurovum sp.


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-170

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Nonlabens sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Australia: NSW

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: saline water including plankton

ncbi_submitter: Uppsala University


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Nantong; Jiangsu province

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: Linn County; Oregon

ncbi_organism_name: Pseudoclavibacter sp. AY1F1

ncbi_submitter: Oregon State University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Chicago

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Ignavibacteria bacterium UBA2268

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA2268


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus delbrueckii;sb__Lactobacillus delbrueckii subsp. lactis;x__Lactobacillus delbrueckii subsp. lactis DSM 20072


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Yonsei University College of medicine


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Sphagnum bog

ncbi_organism_name: Mycobacterium sp. DL99

ncbi_submitter: University of Minnesota


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Norway

ncbi_isolation_source: Human

ncbi_organism_name: Brucella melitensis

ncbi_submitter: NORWEGIAN INSTITUTE OF PUBLIC HEALTH


ncbi_isolate: Stool culture

ncbi_strain_identifiers: Stool culture

ncbi_submitter: IRB Barcelona / BIST


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Merdivicinus;s__Candidatus Merdivicinus intestinigallinarum


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Wisconsin

ncbi_isolation_source: nasal lavage

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Steroidobacter denitrificans

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_country: Switzerland

ncbi_isolation_source: cheese culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Brigham Young University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Denmark

ncbi_isolation_source: company environment

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 55:k:z39


ncbi_country: USA: NY; New York

ncbi_isolation_source: Human Clinical

ncbi_organism_name: Yersinia pestis

ncbi_strain_identifiers: El Dorado

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Providencia rettgeri DSM 1131

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: Portugal: Guimaraes; Aldao

ncbi_isolation_source: forest soil

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Universidade do Minho


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Elioraea sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG14406

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Faecimonas intestinavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Faecimonas;s__Candidatus Faecimonas intestinavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Faecimonas;s__Candidatus Faecimonas intestinavium


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jan Kochanowski University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Sutterella sp.

ncbi_submitter: Yonsei University


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-673-B08

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mesorhizobium sp. M0976

ncbi_submitter: Washington State University


ncbi_country: France: Mantes

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: metagenome

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Kenya

ncbi_organism_name: Christensenella sp. UBA6345


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolate: metabat2_coassembly_bwa.191 MAG

ncbi_organism_name: Candidatus Gallimonas faecavium

ncbi_strain_identifiers: metabat2_coassembly_bwa.191 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas faecavium


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: body fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_assembly_name: IMG-taxon 2608642106 annotated assembly

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Ottowia sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Hungary

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_submitter: INRA


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Gansu Provincial People's Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Malaysia: Sabah

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Borneo Medical and Health Research Centre


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Mahatma Gandhi University, Kottayam


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Massilia haematophila

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Engelstadt

ncbi_isolate: TIMP

ncbi_isolation_source: beetle abdomen

ncbi_strain_identifiers: TIMP

ncbi_submitter: Johannes Gutenberg-University Mainz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Shikimatogenerans;s__Candidatus Shikimatogenerans bostrichidophilus


ncbi_assembly_name: freshwater MAG --- Loc090116-9m_bin-0542

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: USA: CA

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Alteromonas oceani

ncbi_submitter: Tang lab


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: China: Yellow River delta

ncbi_isolation_source: coastal wetland

ncbi_organism_name: Agromyces binzhouensis

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: Streptomyces sp. CA-179760

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Micromonospora sp. NPDC049460

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Emergencia sp.

ncbi_submitter: EMG


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Pacific Ocean: Costa Rica Margin

ncbi_isolation_source: Single ANME:SRB aggregates separated by FACS after BONCAT. Aggregates were obtained from sediment incubations of a sediment horizon from a push core collected at a methane seep site identified by a grey bacterial mat. This site in the Costa Rica Margin is called  Mussel Beach  and is found on Mound 12. Sample is identified by sample# 9063.

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Gammaproteobacteria bacterium UBA7256


ncbi_country: Switzerland

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Johnsonella sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Unknown Opitutales AM_1811

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_assembly_name: IMG-taxon 2706794916 annotated assembly

ncbi_organism_name: Sphaerochaeta associata

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA 197 T(A)

ncbi_submitter: SC


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Streptococcus mitis


ncbi_isolation_source: marine water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Cloacibacillus porcorum

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Huaian

ncbi_isolation_source: pig slaughterhouse

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: Thermaerobacter sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Thermaerobacter;x__unclassified Thermaerobacter;s__Thermaerobacter sp.


ncbi_country: USA: Providence; RI

ncbi_isolation_source: cecum

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Brown University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Moraxella nonliquefaciens

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: Cornell University


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: infant feces

ncbi_organism_name: Lacticaseibacillus rhamnosus L34

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Nevskia sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: uncultured Leptolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Rhizomicrobium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Finland

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Gangwon State Agricultural research &Extension Services


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: China: Northern Tibetan Plateau

ncbi_isolation_source: saline lake

ncbi_organism_name: Streptomyces sp. 378

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Philomath; Benton Co.; OR

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: USDA


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Northeastern University


ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Corynebacterium pyruviciproducens

ncbi_submitter: University of California, Davis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shan Wei

ncbi_isolation_source: shrimp pool

ncbi_organism_name: Vibrio sp. VP6

ncbi_submitter: Shenzhen Institute of Advanced Technology,Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon mucosa

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Streptomyces luteogriseus


ncbi_country: China: Zhengzhou

ncbi_isolation_source: Powdered Infant Formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Henan Center for Diease Control and Prevention


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Clostridium tetani E88

ncbi_strain_identifiers: Massachusetts

ncbi_submitter: Gottingen Genomics Laboratory


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umm Al-Qura University


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Monash University


ncbi_country: Denmark: Aalborg

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hydrogenothermaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: Sinepuxent Island; MD

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Flavipsychrobacter stenotrophus


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Photobacterium sp. WH80

ncbi_submitter: HZI-Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sonorensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Candidatus Dormibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Dormiibacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Dormiibacter;x__unclassified Candidatus Dormibacter;s__Candidatus Dormibacter sp.


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: USA

ncbi_isolation_source: Nebraska

ncbi_submitter: University of Nebraska Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Tongue scraping

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Queensland


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: EMG


ncbi_country: China: Xiangtan City;Hunan Province

ncbi_isolation_source: leaf

ncbi_organism_name: Streptomyces xanthii

ncbi_submitter: School of Life Science,Hunan University of Science and Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: Previously collected from blood cultures (R)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Erasmus University Medical Center


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Washington


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Yangzhou University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital