ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Opitulatrix roisinitermitis

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


gtdb_representative: t

ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: UANTW


ncbi_organism_name: Escherichia coli

ncbi_submitter: Carleton Univeristy


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Leifsonia aquatica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Germany

ncbi_isolation_source: Cattle

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11649

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: chicken yard waste

ncbi_organism_name: Clostridium ljungdahlii DSM 13528

ncbi_refseq_category: reference genome

ncbi_submitter: Competence Network

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: East China Normal University


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: air

ncbi_organism_name: Pedobacter sp. Leaf170

ncbi_submitter: ETH ZURICH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_assembly_name: freshwater MAG --- Loc080925-4m_bin-0780

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Atopobiaceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Anhui University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Lacrimispora sp. HJ1

ncbi_submitter: Seoul Medical Center


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Alistipes onderdonkii


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: University of Pittsburgh


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2615840718 annotated assembly

ncbi_organism_name: Marinovum algicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Phenylobacterium aquaticum

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Kenya: Kisumu

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Rice root associated bacteria

ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Yogurt

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: URMITE


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. NA03103

ncbi_submitter: Nanjing University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Kingston Uniiversity

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Edaphocola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Australia: Perth

ncbi_isolation_source: conjugation and plant nodule

ncbi_organism_name: Mesorhizobium loti

ncbi_submitter: Curtin University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W62934

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG043

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-6444

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. actinidifoliorum


ncbi_isolation_source: Ropy Bread

ncbi_strain_identifiers: FadWe

ncbi_submitter: University of Alberta


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Mrs. Puff

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Spain: Marbella

ncbi_isolation_source: Shore seawater

ncbi_organism_name: Vibrio coralliirubri

ncbi_strain_identifiers: MARg

ncbi_submitter: University of Cambridge


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_organism_name: Bacillus sp. DAG6

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DAG6


ncbi_organism_name: Streptomyces sp. NPDC052309

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: EMG


ncbi_submitter: University of Wyoming


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Psychrobium sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB3u-8

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Neisseria polysaccharea

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2687453724 annotated assembly

ncbi_organism_name: Streptomyces sp. 2224.1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_assembly_name: IMG-taxon 2695420953 annotated assembly

ncbi_organism_name: Geodermatophilus nigrescens


ncbi_country: USA: Kansas

ncbi_isolation_source: feces

ncbi_submitter: University of Guelph


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Nankai Universigy


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Halobacillus halophilus DSM 2266

ncbi_submitter: Max-Planck-Institute of Biochemistry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Halobacillus;s__Halobacillus halophilus;x__Halobacillus halophilus DSM 2266


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: NIHS


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Colombia: Cali

ncbi_isolation_source: Peritoneal fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Respiratory tract secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_organism_name: Acinetobacter gerneri

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0434

ncbi_submitter: Broad Institute


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Pakistan: Karachi

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus glycinifermentans

ncbi_submitter: ICCBS, University of Karachi


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: Rumen uncultured genome RUG13105

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: Taiwan

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_strain_identifiers: Taillow

ncbi_submitter: National Chung Cheng University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_organism_name: Campylobacter hyointestinalis

ncbi_submitter: Universidad de Leon


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Radboud University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Eugene

ncbi_isolation_source: organic material

ncbi_organism_name: Vibrio sp. ZOR0018

ncbi_submitter: University of Oregon


ncbi_assembly_name: freshwater MAG --- MJ120730A_bin-217

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Nostoc sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces sp. NPDC002730

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Queensland

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Center for Biotechnology Information


ncbi_strain_identifiers: NGH Pa07

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: USA: Kennedy Space Center

ncbi_isolation_source: clean room in the vehicle assembly building where the viking spacecraft were assembled

ncbi_organism_name: Bacillus sp. V59.32b

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. V59.32b


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces griseoviridis


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institut


ncbi_organism_name: Enterococcus lactis


ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: Fauclty of medecine and pharmacy


ncbi_organism_name: Streptococcus parauberis KCTC 11980BP

ncbi_strain_identifiers: KCTC 11980BP

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: USA: IN

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Nocardioides sp. zg-1228

ncbi_submitter: China CDC


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-113

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: Bangladesh

ncbi_submitter: SC


ncbi_isolation_source: Paper surface

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Fudan University


ncbi_country: Malawi: Blantyre

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: WA; Seattle

ncbi_isolation_source: urine


ncbi_country: China: Peking

ncbi_isolation_source: Hair cutting kit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: China Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Actinomadura sp. NTSP31

ncbi_submitter: Yildiz Technical University


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_strain_identifiers: WHRI 5636

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Italy: Padova

ncbi_isolation_source: ricotta cheese

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Padova


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1088S


ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Tongji Hospital, School of Medicine, Tongji University


ncbi_country: Poland

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Peptococcus simiae

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: China: inner Mongolian

ncbi_isolation_source: culture medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Paraburkholderia fungorum

ncbi_strain_identifiers: KJ

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_assembly_level: Chromosome

ncbi_organism_name: Candidatus Enterococcus lowellii

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-424-P16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Salmonella sp. M198

ncbi_submitter: Zhejiang University


ncbi_country: Kenya

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Nairobi


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Dialister invisus

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus agalactiae GB00202

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: France

ncbi_isolation_source: cecal contents

ncbi_organism_name: Enterococcus asini


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Ireland

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University College Cork


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Gottschalkia purinilytica

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Sangeribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Flavobacteriales bacterium


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mycoplasma suis KI3806

ncbi_submitter: Institute of Veterinary Bacteriology


ncbi_country: China

ncbi_organism_name: Ectopseudomonas hydrolytica

ncbi_submitter: Chung-Ang University


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. M-M49

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp. UBA6481

ncbi_submitter: University of Queensland


ncbi_isolation_source: China;Henan

ncbi_organism_name: Salmonella sp. HNK130


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_organism_name: Pseudoalteromonas sp. 24-MNA-CIBAN-0067

ncbi_submitter: University of Florence


ncbi_country: Brazil: Minas Gerais; Furnas Lake

ncbi_isolation_source: non-axenic culture from freshwater

ncbi_submitter: Universite de Montreal


ncbi_assembly_name: freshwater MAG --- Loclat_bin-19700

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shanghai Ocean university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chungnam national university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Salmonella sp. NW102

ncbi_submitter: Sichuan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Bifidobacterium psychraerophilum

ncbi_submitter: Teagasc


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. NW290


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: University of Surrey


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Neuroinfections Emerging in the Americas Study


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lund University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Instituto de Quimica


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudolysobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;s__Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_12_FULL_48_11


ncbi_country: Zimbabwe

ncbi_submitter: µFORGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis;x__Yersinia pestis subsp. pestis bv. Orientalis


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. VBCF_06 NA8

ncbi_strain_identifiers: VBCF_06 NA8

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-3 day 1472

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Gordonibacter sp.


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Tissues

ncbi_organism_name: Staphylococcus aureus M457-1

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Kineosporiaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Listeria innocua

ncbi_submitter: PulseNet USA


ncbi_country: South Korea: Pohang

ncbi_isolation_source: gut

ncbi_organism_name: Enterovibrio paralichthyis

ncbi_submitter: Sungkyunkwan University


ncbi_country: Mali

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: Clostridia bacterium


ncbi_country: France: Marseille

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseille


ncbi_country: Egypt

ncbi_isolation_source: stool

ncbi_submitter: USUHS


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Tuscaloosa; AL

ncbi_isolation_source: Breast meat


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: Foshan

ncbi_isolation_source: liquorpericardii

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Ithaca(NY)

ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Methylomonas koyamae

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Waterloo


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Glycomyces sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Jharkhand; Bokaro; Khetko

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: North Sea

ncbi_isolation_source: coastal sea water column HE361-14 at a depth of 3m

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Hong Kong

ncbi_isolation_source: Stanley WWTPs_42 WWTPs effluent

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella aerogenes


ncbi_country: China: Shandong

ncbi_isolation_source: fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: University of Queensland


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1486

ncbi_submitter: Broad Institute


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Australia: Tullaroop Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Dolichospermum circinale CS-541/04

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Guatemala

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: DE

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Colon

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Poland: Koszalin

ncbi_organism_name: Streptococcus sp. 1453

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 49

ncbi_submitter: USDA-ARS


ncbi_country: Canada: Syncrude; Ft. McMurray; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Patescibacteria group bacterium UBA5633

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA5633


ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Italy

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli 907672

ncbi_submitter: Washington University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes indistinctus


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: BGI


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acididesulfobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;x__unclassified Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter sp.


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Nigeria: Kano

ncbi_submitter: Robert Koch Institute, Germany


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis Nm8187

ncbi_submitter: University of Toronto


ncbi_isolation_source: intestine

ncbi_organism_name: Oxalobacter formigenes

ncbi_submitter: University of Western Ontario


ncbi_organism_name: Rothia sp. CCM 9417

ncbi_submitter: Masaryk University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. CCM 9417


ncbi_country: USA: Texas

ncbi_isolation_source: respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: Canada: Manitoba

ncbi_isolation_source: eye infection

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: National Microbiology Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Xenobia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;x__unclassified Candidatus Xenobia;s__Candidatus Xenobia bacterium


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Kalmar county hospital


ncbi_country: Mexico: Monterrey; Nuevo Leon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Xylanibacter ruminicola 23

ncbi_strain_identifiers: Bryant 23

ncbi_submitter: TIGR


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dyella sp. KRB-257

ncbi_submitter: Kyonggi university


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Arsenophonus sp. NC-PE1-MAG3

ncbi_submitter: Northwest A&F University


ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Salmonella sp. SAL04294

ncbi_submitter: Zhejiang university


ncbi_organism_name: Citrobacter sp. BNK-42

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: uncultured Deferribacteres bacterium


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: CNRS UMR6197

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Vibrio owensii

ncbi_submitter: Tel Aviv University


ncbi_organism_name: uncultured Nitrospira sp.


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Granulicoccus phenolivorans

ncbi_submitter: University of South Africa


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Yong Zhou City; Hunan Province

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shanghai Veterinary Research Institute


ncbi_assembly_name: IMG-taxon 2599185317 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC06-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Candidatus Apopatosoma intestinale

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Apopatosoma;s__Candidatus Apopatosoma intestinale


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-2-11AD

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Portugal

ncbi_isolation_source: Healthy human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium GW2011_GWE2_44_13


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: Full-scale anaerobic digester operated by the Champaign-Urbana Sanitary District treating a mixture of municipal and industrial waste activated sludge and municipal sewage

ncbi_organism_name: Ignavibacteria bacterium ADurb.Bin266

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteria bacterium ADurb.Bin266


ncbi_country: China: Zhejiang

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Bern


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Leptospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Japan: Lake Biwa; Shiga Prefecture

ncbi_isolation_source: surface freshwater

ncbi_organism_name: Tersicoccus sp. Bi-70

ncbi_submitter: The University of Tokyo


ncbi_country: Kenya: Nairobi

ncbi_submitter: Makerere University


ncbi_country: Australia: Australian Capital Territory

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- Loc090721-8-6m_bin-0974

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Paenibacillus amylolyticus

ncbi_submitter: Lodz University of Technology


ncbi_organism_name: Streptomyces sp. NBC_00299

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Salmonella enterica CVM N32754-SQ v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Stanford University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China

ncbi_submitter: China Jiliang University


ncbi_country: Ireland: Dublin

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_country: South Korea

ncbi_organism_name: Neoroseomonas terrae

ncbi_submitter: UNIVERSITY OF GENT


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Providencia huashanensis

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salinispora arenicola CNY011

ncbi_submitter: DOE Joint Genome Institute


ncbi_strain_identifiers: SGSC 2220

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. SARA40


ncbi_organism_name: Colwellia sp. MB3u-64

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Tsinghua University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Yeosu

ncbi_organism_name: Gordonia sp. PP30

ncbi_submitter: Daegu Catholic University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. PP30


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: Universidade Estadual de Londrina


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter pinnipediorum subsp. caledonicus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: imported food: chilli pepper

ncbi_submitter: University of Zurich


ncbi_isolation_source: Ileo-caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Sichuan Agricultural University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: bioreactor

ncbi_organism_name: Synergistaceae bacterium UBA5560

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: National Institute of Biotechnology


ncbi_isolate: AOP1_E1_surf _bin _20

ncbi_organism_name: Fusobacterium sp.

ncbi_strain_identifiers: AOP1_E1_surf _bin _20

ncbi_submitter: Genoscope


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridium caseinilyticum

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW1094

ncbi_submitter: Sichuan University


ncbi_organism_name: Elizabethkingia anophelis subsp. anophelis

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Desulfovibrio fairfieldensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Bifidobacterium bifidum


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: PS1 clade bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;s__PS1 clade bacterium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ignavibacteria bacterium UBA2333

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA2333


ncbi_country: Germany

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_country: Estonia: Polvamaa; Kooraste

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: MD

ncbi_isolation_source: Turkey

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Peru

ncbi_isolation_source: Olive production company

ncbi_organism_name: Shewanella algae

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Agrobacterium tumefaciens str. Kerr 14

ncbi_strain_identifiers: Kerr 14

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium tumefaciens;x__Agrobacterium tumefaciens str. Kerr 14


ncbi_country: Poland

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: NanKai universit


ncbi_assembly_name: Salmonella enterica CVM N45955 v1.0

ncbi_country: USA: OR

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Stanford University


ncbi_assembly_name: Gammaproteobacteria bacterium Ga0077554

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium Ga0077554

ncbi_submitter: University of Glasgow


ncbi_country: Curacao: Netherland Anthilles

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Moorena sp. SIO3A5

ncbi_submitter: UCSD


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ecuador

ncbi_isolation_source: nodules

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_strain_identifiers: CNPSo 675

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA/CDC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella sp. C3248

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: APC Microbiome Ireland


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Region Zealand


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID4936

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Basic Medical Science


ncbi_country: Canada

ncbi_submitter: Swansea University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Bacillus sp. SM-B1

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SM-B1


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus HOAG6025

ncbi_submitter: Broad Institute


ncbi_country: USA: Lake Erie; Sandusky Bay; Ohio

ncbi_isolation_source: enrichment culture of drinking water treatment residuals inoculated with Planktothrix agardhii

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: The Ohio State University


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Florida


ncbi_isolation_source: oronasal secretion material

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Animal Health, Veterinary Medicine, Rakuno Gakuen


ncbi_organism_name: Streptococcus sp. 2021WUSS125

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Germany: Bavaria

ncbi_isolation_source: bee honey

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: South Korea: Wanju-gun

ncbi_isolation_source: Agricultural soils

ncbi_organism_name: Rhodococcus sp. 3-2

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 3-2


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- MJ130729A_bin-425

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC091025

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_organism_name: Escherichia coli KTE207


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Baltic Sea: Linnaeus Microbial Observatory outside of Oland

ncbi_organism_name: Flavobacterium sp. LMO9

ncbi_submitter: Linnaeus University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Zhejiang

ncbi_isolation_source: cecal contents

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides ovatus


ncbi_country: USA: Boston; MA

ncbi_isolation_source: laboratory evolution

ncbi_submitter: Harvard University


ncbi_country: China: Wuhan

ncbi_organism_name: Erwinia sp. BC051422

ncbi_submitter: The Central Hospital of Wuhan


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: France

ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: INRAe


ncbi_country: Namibia

ncbi_isolation_source: nest material

ncbi_organism_name: Sphingomonas sp. IC-56

ncbi_submitter: Aarhus university


ncbi_country: Norway: Sarpsborg/Fredrikstad

ncbi_isolation_source: Glomma River

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: Norwegian Defence Research Establishment (FFI)


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: China: Weihai

ncbi_isolation_source: coastal sediments

ncbi_organism_name: Microbaculum marinisediminis

ncbi_submitter: Shandong Univerity at Weihai


ncbi_country: China: Yunnan

ncbi_isolation_source: Soy product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 96

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Enterococcus sp.


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Flavonifractor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: South African National Antarctic Programme


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Leclercia tamurae

ncbi_submitter: Universidad de Sevilla


ncbi_organism_name: Sphingomonas sp. NPDC079357

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: USDA Agricultural Research Service


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: California; Eel River; South Fork Eel River near Phillipsville

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: non-pure culture

ncbi_organism_name: Anabaena sp. AL09

ncbi_submitter: Oregon State University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bilifractor porci

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Clostridium baratii

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Ontario

ncbi_isolation_source: ANIMAL

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20100089


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: Clemson University


ncbi_country: Ecuador: Quito

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Acidithiobacillus sp. YTS05

ncbi_submitter: Shandong University


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Brachyspira sp.

ncbi_submitter: AAFC


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas sp. UBA6549

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0716

ncbi_submitter: Broad Institute


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Axillary-groin Swab

ncbi_organism_name: Helcobacillus massiliensis

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;s__Candidatus Staskawiczbacteria bacterium RIFOXYB1_FULL_37_44


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_assembly_name: Rumen uncultured genome RUG10598

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Selenomonas bovis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aeromonas sp. ANP5

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli


ncbi_country: China: Guigang City; Guangxi Province

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M66673


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wadsworth Center, New York State Department of Health


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Staphylococcus aureus T15889


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Geobacter sp. UBA5730

ncbi_submitter: University of Queensland


ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Candidatus Faecivivens sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Faecivivens;x__unclassified Candidatus Faecivivens;s__Candidatus Faecivivens sp.


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Faecalicatena fissicatena

ncbi_submitter: University of Chicago


ncbi_country: Belarus: Minsk District

ncbi_isolation_source: bronchoalveolar lavage (female)

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: The Republican Research and Practical Center for Epidemiology and Microbiology


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Caloramator sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Nebraska

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: France

ncbi_organism_name: Pseudomonas tremae

ncbi_submitter: University of Arizona


ncbi_organism_name: Sulfitobacter sp. TCYB15

ncbi_submitter: First Institute of Oceanography, Ministry  of Natural Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: USA; Santa Monica Basin

ncbi_isolation_source: seep sediment enrichment culture

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: deep mesotrophic lake

ncbi_organism_name: Limnohabitans sp. MMS-10A-160

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus sp. C85

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Nocardia sp. NPDC046473

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: uncultured Sphingorhabdus sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_isolation_source: throat

ncbi_organism_name: Staphylococcus aureus M44987

ncbi_submitter: Broad Institute


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: France: Centre Hospitalier General de Beauvais

ncbi_organism_name: Enterococcus faecalis EnGen0233


ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Arenibacter certesii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Staphylococcus aureus F16106


ncbi_country: Australia: Hobart

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Thiomonas sp. 15-66-11

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp. 15-66-11


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolation_source: water

ncbi_organism_name: Limnobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_country: USA

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: NCTR/FDA


ncbi_country: Australia

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Exiguobacterium sp. UBA5002

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. UBA5002


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Bacteroides sp.


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Iowa


ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_submitter: Aarhus University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Dublin

ncbi_submitter: dtu national food institute


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: chinese


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hebei North University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Arsenophonus sp. NC-LC2-MAG3

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Umea University


ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Salinispora tropica CNB-440

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Chile: Region del Maule; Estero Los Robles

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Ghana: Kumasi

ncbi_isolation_source: dripstand

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2010C-4221


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-180

ncbi_submitter: Broad Institute


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: Finland

ncbi_isolation_source: Fecal samples from slaughtered sheep

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich, Vetsuisse Faculty


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces harbinensis

ncbi_submitter: Nanjing University


ncbi_organism_name: Clostridioides sp. ZZV14-6009

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: blood culture

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_country: Brazil: Botucatu; Sao Paulo State

ncbi_submitter: Sao Paulo State University