ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Embrapa Genetic Resources and Biotechnology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: China: Guangdong

ncbi_genome_representation: full

ncbi_organism_name: Staphylococcus sp. GDY8P209P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_assembly_level: Contig

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Colombia: Atlantico

ncbi_isolation_source: estuarine water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Magnetococcus sp. YQC-5

ncbi_submitter: Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Micromonospora sp. NPDC047753

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Caulobacter sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: China: Zhejiang

ncbi_isolation_source: Domestic environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA: Evans Co.; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Palmer LTER


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_isolation_source: intestinal content

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: ChinaCDC


ncbi_country: Antarctica

ncbi_isolation_source: soil crust

ncbi_organism_name: Argonema galeatum A003/A1

ncbi_refseq_category: reference genome

ncbi_submitter: Palacky University Olomouc

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Paraburkholderia dipogonis

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Pseudomonas sp.


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_level: Complete Genome

ncbi_country: India

ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_strain_identifiers: LMG 859

ncbi_submitter: CSIR-Institute of Microbial Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae

ncbi_type_material_designation: assembly from pathotype material


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Vagina

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_level: Chromosome

ncbi_country: Germany

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bielefeld, Germany


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1617 from squamous cell carcinomas patient MST026

ncbi_organism_name: Staphylococcus epidermidis


ncbi_country: Brazil: Belo Horizonte

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: France

ncbi_isolation_source: spontaneous streptomycin resistant clone isolated at Pasteur Institute

ncbi_organism_name: Shigella flexneri 5a str. M90T

ncbi_submitter: Dalhousie University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Shigella;s__Shigella flexneri;x__Shigella flexneri 5a;x__Shigella flexneri 5a str. M90T


ncbi_country: USA: Lake Washington

ncbi_organism_name: Acidovorax sp. 30

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil

ncbi_isolation_source: artisanal cheese

ncbi_submitter: School of Pharmaceutical Sciences


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Portugal

ncbi_isolation_source: Anal

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: National Institute of Health, Portugal


ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway: Trondheim fjord

ncbi_isolation_source: sponge

ncbi_organism_name: Streptomyces sp. GBA 94-10 4N24

ncbi_submitter: The Institute for Information Transmission Problems

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__unclassified Streptomyces;s__Streptomyces sp. GBA 94-10 4N24


ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Alberta


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Iceland: Seltjarnarnes

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Matis ohf


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: China: Anhui

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of California, Berkeley


ncbi_country: Colombia: Antioquia

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB09-157

ncbi_submitter: Broad Institute


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CA

ncbi_isolation_source: kidney llama camelid

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_37_16


ncbi_country: Chile: Santiago

ncbi_isolation_source: beef

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_country: China: Guigang City; Guangxi Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: China

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Harbin Institute of Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Segatella copri

ncbi_submitter: Georgia Institute of Technology


ncbi_strain_identifiers: Case 2

ncbi_submitter: National Reference Centre for Multidrug-resistant Gram-negative Bacteria (NRC)


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0445


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolate: AOP35_04H_surf _bin _17

ncbi_organism_name: Canibacter sp.

ncbi_strain_identifiers: AOP35_04H_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Smithella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: uncultured Hyphomicrobium sp.


ncbi_isolation_source: gut

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Segatella copri

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: China: Hengyang

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


gtdb_type_species_of_genus: t

ncbi_isolation_source: chicken feces

ncbi_organism_name: Vagococcus fluvialis

ncbi_strain_identifiers: NCDO 2497

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Blastopirellula marina

ncbi_submitter: University Duisburg-Essen


ncbi_submitter: University of Utah


ncbi_isolation_source: Cleaned poultry house

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Aeromonas hydrophila

ncbi_strain_identifiers: Aeromonas hydrophila

ncbi_submitter: Veterinary Public Health Veterinary Medicine, Kitasato University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Puerto Rico: Patillas

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Candidatus Leptovillus affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Kluyvera georgiana

ncbi_strain_identifiers: Igbk 15

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transverse colon lumen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Moredun Research Institute


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Russia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_country: Italy: PA Bolzano

ncbi_isolation_source: BAL

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Czech Academy of Science


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: Antarctica

ncbi_isolation_source: seawater

ncbi_organism_name: Flavobacterium frigidimaris

ncbi_submitter: FDA


ncbi_country: Hong Kong

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1066

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Enterococcus sp. AZ166

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Mycolicibacterium cosmeticum

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M73849


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0774


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Enterobacter sp. MGH 23

ncbi_strain_identifiers: MGH 23

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 23


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_submitter: Public Health Laboratory


ncbi_country: Belgium

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 2159

ncbi_submitter: Agroscope


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Natronincolaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_organism_name: Corynebacterium provencense

ncbi_submitter: URMITE


ncbi_organism_name: Ovoidimarina sediminis

ncbi_submitter: Sungkyunkwan University


ncbi_country: Chile: Santiago

ncbi_isolation_source: Intestinal biopsy

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Streptomyces rhizosphaericus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_02_FULL_55_25


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Oribacterium parvum ACB8

ncbi_submitter: J. Craig Venter Institute


ncbi_country: France: Nantes

ncbi_isolation_source: Digestive

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Korea Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Actinomarinales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__unclassified Candidatus Actinomarinales;s__Candidatus Actinomarinales bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Proteobacteria bacterium UBA7415

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA7415


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Alkalibacter rhizosphaerae

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Lebanese American university


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_isolation_source: ascites

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Bangladesh

ncbi_isolation_source: pond water

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Anaeromassilibacillus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Melioribacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Spain: Huelva; Cueva de la Mora

ncbi_isolation_source: Deep anoxic layer (35m depth) Cueva de la Mora

ncbi_organism_name: bacterium

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Salmonella sp. 2020_354

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: University of Alberta


ncbi_organism_name: [Eubacterium] siraeum


ncbi_country: Denmark: Ega

ncbi_isolation_source: activated sludge from Ega_18-Q3-R5-49

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0810

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: NIVIP


ncbi_country: China: Yunnan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Instituto de Higiene, Facultad de Medicina, Universidad de la Republica


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Variibacter sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Cohaesibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: uncultured Nitrosomonas sp.

ncbi_submitter: Lund University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Yonsei University


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Rumen uncultured genome RUG12075

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Croceibacter atlanticus


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus doosanensis

ncbi_submitter: Ecology and Nature Conservation Institute


ncbi_country: Sweden: Eksjs

ncbi_isolation_source: stool

ncbi_submitter: Division of Clinical Microbiology, Department of Laboratory Medicine, Karolinska Institute, Karolinska University Hospital, Huddinge, Sweden


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Oribacterium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Wageningen University


ncbi_country: Iraq

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Canada: Eastern region

ncbi_isolation_source: milk from dairy animals with mastitis

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Memorial University of Newfoundland


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0050

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Romania: Bucharest

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_assembly_name: Rumen uncultured genome RUG12210

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: University of pavia


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Atlantic Ocean: East Atlantic Ocean near Canada

ncbi_isolation_source: seawater

ncbi_organism_name: Zunongwangia sp. ESRF-bin46

ncbi_submitter: National Research Council Canada


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01042

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01042


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Microbacterium testaceum StLB037

ncbi_submitter: BGI


ncbi_submitter: Toho University


ncbi_country: USA: Ramsey County; Minnesota

ncbi_organism_name: Clavibacter michiganensis subsp. insidiosus

ncbi_submitter: University of Minnesota, Twin Cities


ncbi_country: USA: WIsconsin

ncbi_organism_name: Streptomyces sp. rh34

ncbi_submitter: Cornell University


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus suis YS64

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Stellaceae bacterium


ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Yersinia pestis I1970005

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Streptomyces sp. NPDC018338

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: India

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Microbacterium sp. 4NA327F11

ncbi_submitter: University of Trento


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Borkfalkia faecavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Denmark: Thy National Park; dry moor in national park

ncbi_organism_name: Streptomyces sp. NBC_01500

ncbi_submitter: Technical University of Denmark


ncbi_country: South Korea: Wanju

ncbi_organism_name: Pseudomonas sp. V98_8

ncbi_submitter: Max Rubner-Institut


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Micavibrio sp. UBA2341

ncbi_submitter: University of Queensland


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest medical university


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Burkholderia pseudomultivorans

ncbi_strain_identifiers: IVRIUSG

ncbi_submitter: ICAR - Indian Veterinary Research Institute


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: Corticimicrobacter sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Germany

ncbi_organism_name: Staphylococcus kloosii

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: TS

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Brucellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: pig

ncbi_organism_name: Campylobacter coli BIGS0015

ncbi_submitter: Swansea University


ncbi_organism_name: Christensenellales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: bacterium TM462

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Bacillus cereus group sp. MYBK101-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK101-2


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Monash University


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Gemella morbillorum

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Shijiazhuang

ncbi_isolation_source: Cervical secretion

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Haemophilus sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Mexico: Bahia de Campeche

ncbi_isolate: specimen P

ncbi_isolation_source: symbiont-bearing gill tissue

ncbi_strain_identifiers: specimen P

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Piscirickettsiaceae;g__Cycloclasticus;x__unclassified Cycloclasticus;s__Cycloclasticus sp. symbiont of Bathymodiolus heckerae


ncbi_country: Switzerland

ncbi_isolation_source: chicken crop

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: ETH Zurich


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: Netherlands: Gelderland; Wageningen

ncbi_isolation_source: enrichment of guinea pig fecal samples

ncbi_organism_name: Streptococcus sp. 'caviae'

ncbi_strain_identifiers: Cavy grass 6

ncbi_submitter: Wageningen University


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Intestinimonas timonensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom: England

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. maculicola;x__Pseudomonas syringae pv. maculicola str. M6


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guizhou; Jiuan

ncbi_organism_name: Metallibacterium sp.


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bartonella sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: China: Lake Taihu

ncbi_isolation_source: cyanobacterial bloom water

ncbi_organism_name: Novosphingobium sp. ERW19

ncbi_submitter: Shenzhen International Graduate School, Tsinghua University


ncbi_organism_name: uncultured Desulfospira sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Clostridiaceae bacterium UBA4536

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Brazil: Rio de Janeiro; Parnaso

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. CBMA 360

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: United Arab Emirates

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_country: USA: Montana

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: USDA-ARS


ncbi_country: Hong Kong

ncbi_isolation_source: Shatin WWTPs_12 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Kangiella sp.

ncbi_submitter: Northeastern University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprococcus comes

ncbi_submitter: EMG


ncbi_organism_name: Abiotrophia defectiva


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Holdemanella hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_country: Lebanon

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faecal

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ICE 737

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_country: United Kingdom: Wales

ncbi_isolation_source: mine water

ncbi_organism_name: Acidithrix ferrooxidans

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: China: Weihai

ncbi_isolation_source: gut

ncbi_organism_name: Roseovarius dicentrarchi

ncbi_submitter: Shandong University


ncbi_country: USA

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio vulnificus Env1

ncbi_submitter: University of Valencia


ncbi_assembly_name: BDZ

ncbi_country: Australia: Townsville; Queensland

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: BDZ

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad Nacional Andres Bello


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Pakistan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF READING


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: China: Chongqing

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_organism_name: Morganella morganii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 2868

ncbi_submitter: University of Groningen, University Medical Center Groningen

ncbi_type_material_designation: assembly designated as clade exemplar


ncbi_assembly_name: Rumen uncultured genome RUG13506

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Switzerland

ncbi_organism_name: Bordetella hinzii 1277

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chlamydia trachomatis E/SW3

ncbi_submitter: Sanger Institute


ncbi_organism_name: Streptomyces sp. NPDC005953

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Mississippi State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-242


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0064

ncbi_submitter: Broad Institute


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo, A.C. (CIAD)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Frumkin Institute of physical chemistry and electrochemistry RAS (IPCE RAS)


ncbi_organism_name: uncultured Comamonadaceae bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured delta proteobacterium


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- LaPlata-5m-a_bin-214

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: Germany

ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Munster


ncbi_country: Canada

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Segatella copri

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0072

ncbi_submitter: University of Liege


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Amycolatopsis bullii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0023

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS


ncbi_country: Hungary

ncbi_isolation_source: caecum domestic rabbit

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Comamonas sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Gar NS 6

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1111101949

ncbi_submitter: Broad Institute


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: China: Ezhou

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. FX8

ncbi_submitter: Huanggang Normal University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Methylobacterium radiotolerans JCM 2831

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: India

ncbi_isolation_source: chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Duck

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. BCW_7460

ncbi_submitter: University of California at Davis


ncbi_organism_name: beta proteobacterium KB13

ncbi_submitter: The Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Isosphaeraceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 8

ncbi_organism_name: Chlorobium limicola

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_country: Taiwan: Hualien

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: Tzu Chi University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas peli

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-1179

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Escherichia coli

ncbi_submitter: shandong university


ncbi_organism_name: Guyparkeria sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EMG


ncbi_country: USA:New York; EastHarlem

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR1006

ncbi_submitter: Texas A&M University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_isolation_source: Sand

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-2912

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Holophaga sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Roraima

ncbi_isolation_source: wound secretion

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: WTSI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium RIFOXYA12_FULL_33_12


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: fresh feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: France

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_organism_name: Hungatella effluvii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maryland

ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA

ncbi_isolation_source: Ankle

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: MNPAB

ncbi_submitter: The University of Iowa


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Tisiphia sp.

ncbi_submitter: Northwest A&F University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: GSFC UNIVERSITY


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Mesorhizobium sp. M0968

ncbi_submitter: Washington State University


ncbi_country: Ecuador: Quito

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_isolation_source: wetlands

ncbi_organism_name: Mucilaginibacter psychrotolerans

ncbi_submitter: Shandong university at Weihai


ncbi_organism_name: Epilithonimonas sp.


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Bacillus sp. EKM420B

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EKM420B


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_submitter: KU Leuven


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Sphingorhabdus lacus

ncbi_submitter: University of Florida


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces syringium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Hospital & Research Institute


ncbi_organism_name: Eisenbergiella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella sp. SJTUF15583

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Serratia sp. NPDC087055

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. NPDC087055


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Xanthomonas hortorum pv. gardneri


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Tissierellia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__environmental samples;s__uncultured Tissierellia bacterium


ncbi_country: New Zealand

ncbi_submitter: New Zealand Genomics Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 18708


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: University of Chicago


ncbi_country: USA: Michigan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Streptomyces zhihengii


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Turkey: Samsun

ncbi_organism_name: Micromonospora sp. D75

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: IMPAM-CONICET


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Japan

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Finland

ncbi_organism_name: Yersinia frederiksenii


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18


ncbi_organism_name: Shewanella colwelliana

ncbi_submitter: Toho University


ncbi_country: France: Centre

ncbi_isolation_source: leaf spots on Actinidia deliciosa hayward

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. actinidifoliorum


ncbi_country: Hungary: Soroksar river (tributary of Danube river)

ncbi_isolation_source: rhizosphere of Typha angustiflora

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: Institute of Pharmacy and Molecular Biotechnology


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Oscillatoria sp. PMC 1068.18

ncbi_submitter: National Museum of Natural History - Paris


ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Paraburkholderia azotifigens

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: France

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_strain_identifiers: CNCM I 4543

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: China: Shandong

ncbi_isolation_source: secretion

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: NBRC 3376

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_country: China: Yantai

ncbi_isolation_source: The RAS Atlantic Salmon facility

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Institute of Microbiology Chinese Academy of Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.461 MAG

ncbi_isolate: bin.461 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_strain_identifiers: bin.461 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; MPn+N amendment

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Montana


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: USA: WA

ncbi_organism_name: Rhodococcus sp. 02-925g

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 02-925g


ncbi_assembly_name: freshwater MAG --- Loc090116-9m_bin-0587

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Desulfurivibrionaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Guangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_country: Japan: Okinawa Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Paraferrimonas sedimenticola

ncbi_submitter: Third Institute of Oceanography, SOA


ncbi_country: Sweden

ncbi_isolation_source: PX colon

ncbi_organism_name: Mycobacterium tuberculosis BTB09-382

ncbi_submitter: Broad Institute


ncbi_country: China: Pishan County

ncbi_isolation_source: fecal specimen

ncbi_organism_name: Brevundimonas pishanensis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp6 AA54

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp6 AA54

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Guangdong institue of microbiology


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Liquorilactobacillus hordei

ncbi_submitter: Teagasc


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae MGH 21

ncbi_strain_identifiers: MGH 21

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 21


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Department of Earth and Planetary Science, The University of Tokyo


ncbi_country: Portugal: Ribatejo e Oeste; Almoster

ncbi_submitter: EVOLMYCO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides;x__Mycoplasma mycoides subsp. mycoides C425/93


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Mexico: Guaymas Basin

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Fish

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Lutibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: Argentina: Balcarce; Buenos Aires province

ncbi_isolation_source: Rectal swab of live bovine cattle

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Instituto Nacional de Tecnologia Agropecuaria


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_submitter: JCVI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_assembly_name: freshwater MAG --- MJ-2014-D7_bin-371

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_country: Indonesia: East Java Province; Pacitan District; Donorojo Subdistrict; Klepu Village; Nglesen backwoods

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Disease Investigation Center Wates


ncbi_country: Zimbabwe

ncbi_organism_name: Bradyrhizobium sp. SEMIA

ncbi_strain_identifiers: SEMIA

ncbi_submitter: University of calcutta


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: China: Bohai Gulf

ncbi_isolation_source: marine sediment

ncbi_organism_name: Vibrio marinisediminis

ncbi_submitter: Binzhou Medical University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_country: Portugal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Health Doutor Ricardo Jorge


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Nocardia xishanensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13297

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Spain: Formentera; Pityuses; Balearic Islands

ncbi_isolation_source: sea coast [ENVO:00000303]|shoreline [ENVO:00000486]

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: University of Naples Federico II

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: India:Gete; Lahaul & Spiti

ncbi_isolation_source: Lake sediment

ncbi_organism_name: Paenibacillus sp. IHB B 3084

ncbi_strain_identifiers: IHB B 3084

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;x__unclassified Paenibacillus;s__Paenibacillus sp. IHB B 3084


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Durham; NC

ncbi_isolation_source: nasal swab

ncbi_organism_name: Corynebacterium sp. MSK074

ncbi_submitter: Duke University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State University of Londrina


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany: Frankfurt

ncbi_isolation_source: Tissue samples (liver; spleen; lung; heart; kidney; ovaries; gut; and skin)

ncbi_organism_name: Brucella sp. 10RB9210

ncbi_submitter: University of Virginia


ncbi_submitter: Center for Microbial Communities


ncbi_country: Italy

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter baylyi;x__Acinetobacter baylyi DSM 14961 = CIP 107474


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Utah

ncbi_isolation_source: stool

ncbi_submitter: Intermountain Healthcare


ncbi_country: China: Beijing

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptococcus sp. Marseille-P7376

ncbi_submitter: URMITE


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Arsenophonus sp.

ncbi_submitter: University of Liverpool


ncbi_isolation_source: tracheal wash

ncbi_organism_name: Metamycoplasma equirhinis

ncbi_submitter: Japan Racing Association


ncbi_country: USA: Seattle

ncbi_isolation_source: urine


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile DA00044

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Listeria innocua Clip11262

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Uganda: Bombo Military Hospital

ncbi_submitter: Makerere University


ncbi_organism_name: Thomasclavelia spiroformis DSM 1552

ncbi_submitter: Stanford University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Pseudoxanthomonas spadix


ncbi_country: United Kingdom

ncbi_isolation_source: cattle

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kedougou


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shizuishan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis


ncbi_country: China

ncbi_organism_name: Pseudactinotalea sp. HY160

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Dorea sp.