ncbi_country: Ghana: Asante Akyem District

ncbi_isolation_source: Chronic wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Goettingen (UMG)


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_genome_representation: full

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: China: Jiangsu

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: anaerobic fermentation tank

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptococcus agalactiae FSL S3-026

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Brevundimonas poindexterae

ncbi_submitter: Tang lab


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Nuclear Industry 417 Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Candidatus Izemoplasma sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;f__Candidatus Izemoplasmataceae;g__Candidatus Izemoplasma;x__unclassified Candidatus Izemoplasma;s__Candidatus Izemoplasma sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Texas at San Antonio


ncbi_country: China: Zhejiang

ncbi_isolation_source: Shellfish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Complete Genome

ncbi_country: Mexico: Puebla

ncbi_isolation_source: Peritoneal dialysis liquid

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: School of Medicine, Southeast University


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Northeast Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Wolbachia endosymbiont of Armadillidium arcangelii

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: wArc

ncbi_submitter: Universite de Poitiers


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Nimes

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Alistipes sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: plant

ncbi_organism_name: Curtobacterium sp. VKM Ac-2852

ncbi_strain_identifiers: VKM Ac-2852

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_organism_name: Termitinemataceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Pakistan

ncbi_organism_name: Shigella sonnei


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: India

ncbi_organism_name: Rothia kristinae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: China: Yunnan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Halieaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a a 3.0 um filter and then through a 0.2 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: City University of Hong Kong


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Shinshu University Graduate School of Medicine, Science and Technology


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nocardia elegans NBRC 108235

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Nocardia;s__Nocardia elegans;x__Nocardia elegans NBRC 108235

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Florida

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: agricultural environmental material

ncbi_organism_name: Escherichia coli

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mediterraneibacter gnavus AGR2154

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: Universiteit Antwerpen


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Eggerthia catenaformis

ncbi_submitter: EMG


ncbi_organism_name: Segatella copri

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Prochlorococcus sp. MIT 0602

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM22699

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_submitter: Faculty of sciences and technology of Mohammedia


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Flavobacterium sp. GT2N3

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Jiangsu University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Burkholderia sp. BCCCDS08

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Aliihoeflea sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes ihumii


ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Enterobacter cloacae complex sp. XAL001

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. XAL001


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Gammaproteobacteria bacterium UBA7363

ncbi_submitter: University of Queensland


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: Australia: Adelaide

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of South Australia


ncbi_country: USA: BIFSCo Region 5

ncbi_isolation_source: bovine hide

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1923


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Candidatus Solibacter sp.

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Solibacter;x__unclassified Candidatus Solibacter;s__Candidatus Solibacter sp.


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Guangzhou

ncbi_isolation_source: LJX

ncbi_submitter: General Hospital of Southern Theatre Command of PLA


ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Serbia

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_submitter: Yuan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_submitter: SC


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: PS1 clade bacterium

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;s__PS1 clade bacterium


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_assembly_name: IMG-taxon 2708742415 annotated assembly

ncbi_organism_name: Azospirillum sp. RU37A

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolate: CoA2 C42

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Bryobacteraceae bacterium CoA2 C42

ncbi_strain_identifiers: CoA2 C42

ncbi_submitter: University of Michigan


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Russia: North Caucasus region

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_country: Iran: Khorasan

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas khorasanensis

ncbi_submitter: KU Leuven


ncbi_country: Antarctica

ncbi_isolation_source: antarctic marine sponge

ncbi_organism_name: Pseudoalteromonas sp. TB51

ncbi_submitter: University of Florence


ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_organism_name: Actinacidiphila bryophytorum

ncbi_submitter: Chengdu university


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: Red Cedar River in Okemos; Michigan; USA

ncbi_organism_name: Sphaerochaeta pleomorpha str. Grapes

ncbi_strain_identifiers: Grapes

ncbi_submitter: JGI


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_assembly_level: Chromosome

ncbi_country: South Africa

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Ochrobactrum sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 8-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinan University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Queensland


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_country: United Kingdom:Aberdeen

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: enrichment culture inoculated with black band disease microbial mat

ncbi_organism_name: Parvularcula sp. BBD 1991-13

ncbi_submitter: University of Michigan


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Japan: Ago Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Halorhodospira sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Enterococcus sp. DIV1639a

ncbi_submitter: Broad Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis TX0470

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Blautia sp.


ncbi_country: USA: FL; Ft. Lauderdale

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudoalteromonas sp. CnMc7-37

ncbi_submitter: Meyer Microbes Lab


ncbi_country: Brazil: Aruja

ncbi_isolation_source: Lettuce

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_strain_identifiers: DOME 6301

ncbi_submitter: Chung Ang University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Shanghai

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Huashan Hospitial of Fudan University


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: China: Tibet; Nyingchi

ncbi_isolation_source: pea roots

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Rainer Borriss's shared submissions


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: AB-Biotics SA


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Lewinella sp.

ncbi_submitter: The University Hong Kong


ncbi_country: Japan

ncbi_isolation_source: water

ncbi_organism_name: Leptospira idonii

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Bradyrhizobium sp. LA6.8

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Chile: Atacama desert; Yungay region

ncbi_isolation_source: soil

ncbi_organism_name: Modestobacter caceresii

ncbi_strain_identifiers: KNN 45-2b

ncbi_submitter: Institute of Biology, Leiden University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Conchiformibius sp.

ncbi_submitter: University of California, Davis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Abawacaibacteriota;s__Candidatus Abawacabacteria bacterium RBG_16_42_10


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Monash University


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_submitter: Ministry of Agriculture and Food, Government of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: lake water

ncbi_submitter: University of Zurich


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus sp. YIM B13569

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13569


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: Strip loin

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Streptomyces sp. NPDC046374

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom

ncbi_organism_name: Myxococcus sp. CA027

ncbi_submitter: Aberystwyth University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA7263

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Russia: Moscow

ncbi_isolation_source: subclavian catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Maricaulis sp.


ncbi_country: Antarctica: Robinson Ridge

ncbi_isolation_source: pooled data from three different soil samples

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: nstitute of Tibetan Plateau Research, Chinese Academy of Sciences


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Beijing

ncbi_isolation_source: gut

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: New Zealand: Southern

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acinetobacter sp.


ncbi_isolation_source: mouse gut

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom: England

ncbi_isolation_source: Wound hock

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Gaiella sp.


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_country: South Korea: Dongmak

ncbi_isolation_source: Tidal flat sediment

ncbi_organism_name: Desulforhopalus sp. IMCC35007

ncbi_submitter: inha university


ncbi_assembly_name: Rumen uncultured genome RUG13538

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: Rumen uncultured genome RUG13379

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_country: USA: Old Alexandria Reservoir

ncbi_isolation_source: surface water collection during the winter

ncbi_organism_name: Pseudomonas sp. NKUCC02_KPG

ncbi_submitter: Northern Kentucky University


ncbi_country: China: Heilongjiang

ncbi_isolation_source: xylem sap

ncbi_organism_name: Rahnella victoriana

ncbi_strain_identifiers: HLNPK 985

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_country: China: Mount Tai

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Yangzhou University


ncbi_country: Canada

ncbi_submitter: Health Canada


ncbi_organism_name: Jannaschia sp. CCS1

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


gtdb_type_species_of_genus: t

ncbi_organism_name: Thermoanaerobacter ethanolicus JW 200

ncbi_submitter: University of Exeter


ncbi_assembly_name: IMG-taxon 2721755848 annotated assembly

ncbi_organism_name: Pseudooceanicola antarcticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Switzerland

ncbi_isolation_source: stool sample

ncbi_submitter: University of Bern


ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lachnospira eligens

ncbi_submitter: EMG


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: AAFC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: AK

ncbi_isolation_source: skin halibut

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: FDA/CFSAN


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Bacillus sp. MYb209

ncbi_submitter: Zoological Institute, Kiel University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MYb209


ncbi_organism_name: Limnospira platensis NCB002

ncbi_submitter: NCell


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: seawater

ncbi_organism_name: Sneathiella sp. P13V-1

ncbi_submitter: Huaqiao University


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0300

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: South Korea

ncbi_isolation_source: Imported beef meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SRCAMB


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: Patient

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus sp. RC51

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RC51


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Undibacterium sp. Ji67W

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Coxiella-like endosymbiont

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Rickettsia aeschlimannii


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Zhejiang Ocean University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Brazil

ncbi_isolation_source: slaughterhouse

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Guizhou; Zhijin

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacteroides sp. CAG:530

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Actinobacillus porcinus

ncbi_submitter: EMG


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Uni Hamburg


ncbi_organism_name: Sphingobacterium siyangense


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridium baratii

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_isolation_source: rice paddy

ncbi_organism_name: Pseudomonas fulva 12-X

ncbi_submitter: US DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas fulva;x__Pseudomonas fulva 12-X


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Kilianstollen; Marsberg

ncbi_isolation_source: biofilm

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 380

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_isolation_source: sewage

ncbi_submitter: University Hospital Muenster


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus sp. CP1998

ncbi_submitter: Kunming Medical University


ncbi_isolate: XDR-PA

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Priestia megaterium Q3

ncbi_submitter: BGI


ncbi_organism_name: Anaplasma marginale str. St. Maries

ncbi_strain_identifiers: St. Maries

ncbi_submitter: Washington State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;g__Anaplasma;s__Anaplasma marginale;x__Anaplasma marginale str. St. Maries


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: India: Mysore

ncbi_isolation_source: raw chicken meat

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:NM;x__Escherichia coli O145:NM str. 2010C-3511


ncbi_organism_name: Bordetella petrii

ncbi_submitter: Bielefeld Univ


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yellow Sea and East China Sea

ncbi_isolation_source: soil sediment

ncbi_organism_name: Exiguobacterium sp. s67

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s67


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Hunan

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides sp. AM25-14

ncbi_submitter: BGI


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_organism_name: Klebsiella michiganensis


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Flammeovirgaceae bacterium SG7u.132

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: Thailand

ncbi_isolation_source: leaves

ncbi_organism_name: Nocardiopsis suaedae

ncbi_submitter: Kasetsart University


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Henan Agricultural University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Australia: NSW

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: Brazil: Sao Paulo; Presidente Venceslau

ncbi_isolation_source: tissue sample

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium TMED225

ncbi_submitter: University of Southern California


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Assam University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Spain: Portonovo; Galicia

ncbi_isolation_source: whole insect macerate from a lab maintained population of field collected O. laevigatus

ncbi_organism_name: Serratia sp. OLFL2

ncbi_submitter: Swansea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. OLFL2


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Johannesburg


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Sphaerisporangium sp. NPDC005288

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Jiangnan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: larvae

ncbi_organism_name: Streptomyces sp. IB2014 011-12

ncbi_submitter: Saarland University


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Pseudomonas paeninsulae

ncbi_submitter: Polar Research Institute of China


ncbi_country: China: Yangzhou

ncbi_isolation_source: pork from retail market

ncbi_organism_name: Escherichia sp. M605

ncbi_submitter: YangZhou university


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Piscibacillus halophilus

ncbi_submitter: Fudan University


ncbi_isolation_source: sub-seafloor sulfide deposits

ncbi_organism_name: bacterium BMS3Bbin05

ncbi_submitter: JAMSTEC


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Stenotrophomonas muris

ncbi_submitter: Bielefeld University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: The Ohio State University


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Uniformed Services University


ncbi_organism_name: Acidaminococcus intestini


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus sp. TV3D

ncbi_submitter: Ataturk Universitesi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TV3D


ncbi_assembly_name: Rumen uncultured genome RUG13574

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Bonn

ncbi_isolation_source: Inner wall of a refrigerator

ncbi_organism_name: Paenibacillus glucanolyticus

ncbi_submitter: Universitaet Bonn


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Aarhus University


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Stenotrophomonas sp.


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: New Zealand: Southern

ncbi_isolation_source: Pharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. F7377

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. F7377


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_organism_name: Paraburkholderia phenoliruptrix


ncbi_country: Japan: Miyagi

ncbi_isolation_source: rice root

ncbi_organism_name: Bradyrhizobium sp. WD16

ncbi_submitter: Tohoku University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_submitter: Massachusetts Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG13556

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Dajin; Hubei

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Canada: British Columbia;Richmond

ncbi_isolation_source: irrigation ditch water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13740


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Mesotoga prima


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Eel River; South Fork Eel River near Piercy

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Delingha

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Dethiobacter alkaliphilus

ncbi_submitter: University of Bremen


ncbi_country: Thailand

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Djasiman;x__Leptospira interrogans serovar Djasiman str. LT1649


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_country: Portugal

ncbi_isolation_source: river water

ncbi_organism_name: Stieleria tagensis

ncbi_submitter: Faculty of Sciences of University of Porto


ncbi_organism_name: Turicimonas muris


ncbi_country: India: Huskur village; Doddaballapura taluk; Bengaluru Rural district; Karnataka State

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-1-1

ncbi_submitter: Curtin University


ncbi_country: USA: Sippewissett Salt Marsh; Buzzards Bay; Cape Cod; Massachusetts

ncbi_isolation_source: salt marsh

ncbi_organism_name: filamentous cyanobacterium CCT1

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__filamentous cyanobacterium CCT1


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Manassas; VA

ncbi_organism_name: Clostridium coskatii

ncbi_submitter: Cornell Genomics Core Facility


ncbi_country: Canada: Toronto

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA

ncbi_isolation_source: coral

ncbi_organism_name: Vibrio coralliilyticus OCN008

ncbi_submitter: Indiana University


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_submitter: Quadram Institutte


ncbi_country: Peru:Ascope; Chicama; La Libertad; AA.HH.

ncbi_organism_name: Yersinia pestis PY-25

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Zhejiang university


ncbi_country: USA: California; Los Angeles County

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Prevotella melaninogenica


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: USA: Washington

ncbi_isolation_source: river sediment

ncbi_organism_name: Micromonosporaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Caulobacter sp. DWR3-1-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Candidatus Curtissbacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;x__unclassified Candidatus Curtissbacteria;s__Candidatus Curtissbacteria bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: Germany: Hamburg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Parma


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC047017

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Unicycler

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affliated Hospital Zhejiang University School of Medicine


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Morganella sp. TYF_4

ncbi_submitter: WenZhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. TYF_4


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Thalassobaculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium MD308

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactobacillus acidophilus CIRM-BIA 442

ncbi_strain_identifiers: CIRM-BIA 442

ncbi_submitter: INRA STLO


ncbi_country: South Korea

ncbi_organism_name: Aeromonas salmonicida subsp. masoucida

ncbi_submitter: Pukyong National University


ncbi_organism_name: Campylobacter jejuni subsp. jejuni M1

ncbi_submitter: Danish Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni M1


ncbi_country: China: chongqing

ncbi_strain_identifiers: MDR-CQJ

ncbi_submitter: Chongqing People's Hospital


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Weissella confusa

ncbi_submitter: EMG


ncbi_isolate: UW

ncbi_isolation_source: isolate obtained from the Eric A. Johnson Laboratory at the University of Wisconsin-Madison

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: CGS-GL


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Pacific Ocean: Aleutian Trench

ncbi_isolation_source: gills from mollusc collected from dive TV grab

ncbi_organism_name: Candidatus Ruthia sp. Apha_13_S6

ncbi_submitter: Universite de Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__unclassified Candidatus Ruthturnera;s__Candidatus Ruthia sp. Apha_13_S6


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_country: South Africa:Durban

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: XinJiang

ncbi_isolation_source: lake water

ncbi_organism_name: Frigidibacter albus

ncbi_submitter: China Agricultural University


ncbi_country: Spain: Olympic Park area in Barcelona

ncbi_isolation_source: fountain water

ncbi_organism_name: Candidatus Gromoviella agglomerans

ncbi_submitter: University of Pavia


ncbi_country: China

ncbi_organism_name: Corynebacterium lizhenjunii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Senegal

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_country: Australia

ncbi_isolation_source: Fresh herb

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The University of Queensland


ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Candidatus Pantoea carbekii

ncbi_submitter: School of Pharmacy, Nihon University


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: New Zealand: Christchurch

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Canterbury


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Tumen region

ncbi_isolation_source: Pilaf with poultry; sunflower oil and pearl flour

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: Streptomyces chisholmiae

ncbi_submitter: Leibniz-Institut DSMZ - Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: NRRL NRS-0334

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Japan

ncbi_organism_name: Comamonas badia DSM 17552

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: EMG


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: University of Helsinki


ncbi_country: China: Xinjiang Uighur Autonomous Region

ncbi_isolation_source: Koumiss

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: China Agricultural University


ncbi_country: Norway

ncbi_isolation_source: Retail sushi

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: NTNU


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Saccharothrix australiensis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Jiangsu;Nanjing

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: China: Sichuan

ncbi_isolation_source: tannery wastewater active sludge

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Sichuan University of Science & Engineering


ncbi_isolation_source: dog oral cavity

ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Osaka Institute of Public Health


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerococcus sp.


ncbi_organism_name: Acinetobacter baumannii UH10007

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Columbia University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: France: Munster; Alsace

ncbi_organism_name: Borreliella afzelii IPT138

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Alkaliphilus sp.

ncbi_submitter: University of Southern California


ncbi_country: Germany

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Algibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Guangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Arthrobacter sp. ATA002

ncbi_submitter: GFZ German Research Centre for Geosciences


ncbi_country: USA: Puerto Rico

ncbi_organism_name: Streptomyces sp. SID11385

ncbi_submitter: University of Wisconsin Madiso


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Region Zealand


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_submitter: Toho University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: China: Zhejiang

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Australia: Northern Territory; North Australian Desert

ncbi_isolate: NAD bin27

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NAD bin27

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NPDC046870

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Phenylobacterium aquaticum

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_country: China: Guangdong

ncbi_isolation_source: pig

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Kuwait

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Beijing

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ectobacillus antri

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: North Carolina State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Hamburg-Eppendorf


ncbi_organism_name: Arsenophonus apicola

ncbi_submitter: University of Liverpool


ncbi_organism_name: Streptomyces sp. NPDC058052

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas atacamensis

ncbi_submitter: KU Leuven


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Stappiaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas sp. CP4

ncbi_submitter: Sandia National Laboratories


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Shandong University


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Selenomonas bovis

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD1_bin-0298

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_assembly_name: Rumen uncultured genome RUG357

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: rabbit gut


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: marine college, shandong university


ncbi_country: China: Jiangsu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acetobacter sp.


ncbi_organism_name: Macellibacteroides fermentans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: TIFN


ncbi_country: Norway

ncbi_isolation_source: Fresh water

ncbi_organism_name: Aeromonas media

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: MD

ncbi_organism_name: Aeromonas sp. FDAARGOS 1411

ncbi_strain_identifiers: FDAARGOS 1411

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA

ncbi_isolation_source: sediment

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_country: Russia: East Siberia

ncbi_isolation_source: low-mineralized lake

ncbi_organism_name: Ectothiorhodospira lacustris

ncbi_submitter: Bellevue University


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Raoultella sp. 18110

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Campylobacter californiensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Korea Disease Control and Prevention Agency


ncbi_organism_name: Reyranella sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_assembly_name: Sphingomonadales bacterium Ga0077531

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Sphingomonadales bacterium Ga0077531

ncbi_submitter: University of Glasgow


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Oxford


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_isolation_source: pork sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou univeristy


ncbi_country: Hungary: Bugyi

ncbi_isolation_source: enrichment culture AER1 inoculated with biofilm which develop in hydrocarbon contaminated groundwater; aerobic enrichment culture amended with 20 ppm diesel fuel/ crude oil mixture (3:2; v/v) as carbon and energy sources

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: Szent Istvan University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Germany: Wietze

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0858

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Washington; Richmond Mine C75

ncbi_isolation_source: biofilm

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: Denmark: Capital Region of Denmark

ncbi_organism_name: Streptococcus oralis subsp. oralis

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Phycicoccus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Methylotuvimicrobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Faucicola osloensis

ncbi_strain_identifiers: YHS

ncbi_submitter: Changwon National University


ncbi_country: India

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ncipd


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 214

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: SNUC 4138

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Los Angeles; California

ncbi_isolation_source: human oral cavity UCLA1

ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: The Forsyth Institute


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Mycobacteroides sp. H101

ncbi_submitter: US EPA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Ireland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: India: Faridabad

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_strain_identifiers: Indica

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Xanthomonas vesicatoria

ncbi_strain_identifiers: Xcv DC 97 T16B

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Jeonnam; Yeosu

ncbi_organism_name: Leuconostoc sp. DB-1

ncbi_submitter: Sunchon National University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Pennsylvania State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 86 (4-7026218)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 86 (4-7026218)


ncbi_assembly_name: freshwater MAG --- Day2-5_bin-536

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Montreal

ncbi_isolation_source: Dental unit waterline

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Laval


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Missouri

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Alberta

ncbi_isolation_source: feces

ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: SC


ncbi_organism_name: Erwinia rhapontici

ncbi_submitter: University of British Columbia


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Candidatus Cryptobacteroides bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides bacterium


ncbi_organism_name: Embleya sp. NPDC059259

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Janthinobacterium sp. MDT1-19

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Coprobacillaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Norway

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_country: Brazil: Florianopolis

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University of Science and Technology Beijing


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Eisenbergiella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Canada

ncbi_isolation_source: Fecal sample from botulism case

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Microbulbifer elongatus

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China:Northeast Agriculture University (Harbin; Heilongjiang; China)

ncbi_isolation_source: head

ncbi_organism_name: Streptomyces capitiformicae

ncbi_submitter: Northeast Agricultural University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany

ncbi_organism_name: Sphaerobacter thermophilus DSM 20745

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: Olive knot caused by Pseudomonas savastanoi pv. savastanoi

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE