ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: China: Tengchong; Jinze hot spring

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-Sen University


gtdb_representative: f

ncbi_organism_name: Chryseobacterium sp.


ncbi_assembly_level: Contig

ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AF34-12

ncbi_submitter: BGI


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: UCC isolate

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: US Food and Drug Administration


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K5-310

ncbi_submitter: Institute of Marine research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium RIFCSPHIGHO2_01_FULL_45_15


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: rapid sand filter

ncbi_organism_name: Nitrospira sp. CG24A

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae 440_1540

ncbi_submitter: JCVI


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: Transconjugant cAKJ18

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_name: Salmonella enterica CVM 43797 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: Canada

ncbi_isolation_source: Feedlot Water bowl

ncbi_organism_name: Pedobacter gandavensis

ncbi_submitter: Western College of Veterinary Medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: fermented vegetable

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_organism_name: uncultured Saccharicrinis sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: India: Hyderabad

ncbi_isolation_source: fermented food

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Unique Biotech Limited


ncbi_organism_name: Streptomyces sp. NPDC057021

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. GD03919

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: IL

ncbi_isolation_source: root

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 3A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolate: Psychrobacter fjordensis BSw21516B

ncbi_isolation_source: sea water

ncbi_organism_name: Psychrobacter fjordensis

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: Psychrobacter fjordensis BSw21516B

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY

ncbi_type_material_designation: assembly from type material


ncbi_country: Japan

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S123

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S123


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: AAFC


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Kenya

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus BAG1X1-3

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG1X1-3


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: New Zealand: Manawatu

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: Molecular Epidemiology and Public Health Laboratory


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Salmonella sp. SAL04154

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: EMG


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: United Kingdom

ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Antarctica

ncbi_isolation_source: No. 24 soil

ncbi_organism_name: Arthrobacter sp. 24S4-2

ncbi_submitter: Wuhan University


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus champanellensis;x__Ruminococcus champanellensis 18P13 = JCM 17042


ncbi_isolation_source: Water

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Atlantic Ocean

ncbi_isolation_source: South Atlantic Ocean

ncbi_organism_name: Actibacterium sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Magnetospirillum molischianum DSM 120

ncbi_strain_identifiers: DSM 120

ncbi_submitter: CNRS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W68479

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: eGnome


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: Florida;Key Largo

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: India: Chandigarh

ncbi_isolation_source: Vascular Catheter tip

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_isolation_source: Hydrothermal vent sediment

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Australia: Cloncurry

ncbi_isolation_source: Pool

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: Norway

ncbi_isolation_source: Intestine

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: NORWEGIAN VETERINARY INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Labrenzia sp.


ncbi_isolation_source: not provided

ncbi_organism_name: Bacteroidetes oral taxon 274

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes oral taxon 274


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Eubacteriales bacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-01542

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Nonomuraea indica


ncbi_organism_name: Bacillus cereus group sp. MYBK234-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK234-1


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of New South Wales


ncbi_country: China:Fujian Province

ncbi_isolation_source: expectorate sputum culture

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Beijing Institute of Genomics, Chinese Academy of Sciences


ncbi_country: USA: CA; Bodega Marine Lab

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: UC Davis


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Sil NS 27

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Parvimonas sp. G1604

ncbi_submitter: Shanxi Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_organism_name: Streptococcus suis YS117

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Mucilaginibacter sp. 44-25

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Streptomyces sp. NPDC059002

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces roseolus


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6265

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_country: South Korea: Seoul

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Korea University


ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_strain_identifiers: Hakim RU_GHWS

ncbi_submitter: University of Rajshahi


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of maryland


ncbi_assembly_name: Genome assembly GPTB0036

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Nanjing University


ncbi_country: USA: Wisconsin

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces apricus

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. T_4

ncbi_submitter: Heilongjiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. T_4


ncbi_organism_name: Streptomyces sp. NPDC046924

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Borreliella garinii

ncbi_submitter: LMU Munich


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 2-427-07_S4_C2

ncbi_submitter: IGS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Beijing

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 02

ncbi_strain_identifiers: CHS 02

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 02


ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: University of Queensland


ncbi_country: China:Lianyungang City; Yanwei Harbor

ncbi_isolation_source: marine mud

ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: Jiangsu Ocean University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Baoding

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Agricultural University of Hebei Province


ncbi_country: Ireland

ncbi_isolation_source: blood


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Canada: Quebec

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Government of Canada


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Atopobium sp.


ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Alachua County; Florida

ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6258


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: AOP3_F2_surf _bin _8

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP3_F2_surf _bin _8

ncbi_submitter: Genoscope


ncbi_assembly_name: Rumen uncultured genome RUG13399

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aureliella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Russia: Irkutsk; Ushakovka river

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Holdemanella porci


ncbi_country: Thailand: Trang

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Frigoribacterium sp.


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Devosiaceae bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: uncultured Lentisphaerales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Corynebacterium phoceense

ncbi_submitter: University of Minnesota


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Pseudoxanthomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 1 / A; 5m depth; 0.2 filter

ncbi_organism_name: Elusimicrobia bacterium GWA2_56_46

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Elusimicrobiota;x__unclassified Elusimicrobiota;s__Elusimicrobia bacterium GWA2_56_46


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: gut metagenome

ncbi_organism_name: Helicobacter bilis


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (caries -)

ncbi_organism_name: Actinomyces oris

ncbi_submitter: King's College London


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: Rumen uncultured genome RUG14286

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_submitter: Marine Biological Laboratory


ncbi_isolation_source: gut

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Mycobacterium avium 104

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;x__Mycobacterium avium 104


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_country: Germany

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health


ncbi_isolation_source: throat

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0195

ncbi_submitter: Broad Institute


ncbi_assembly_level: Chromosome

ncbi_country: Guam

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_submitter: Yamaguchi University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Acetobacterales;f__Acetobacteraceae;g__Acetobacter;s__Acetobacter pasteurianus;sb__Acetobacter pasteurianus subsp. pasteurianus;x__Acetobacter pasteurianus subsp. pasteurianus LMG 1262 = NBRC 106471


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA3111

ncbi_submitter: University of Queensland


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Micavibrio sp. UBA6513


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled soil sample collected from floor of cattle farm

ncbi_submitter: The REHAB Consortium


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Heidelberg University Hospital


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-03371

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: BILS


ncbi_country: United Kingdom: East Hendred; Oxon; Oxfordshire

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Blautia hansenii DSM 20583

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia hansenii;x__Blautia hansenii DSM 20583


ncbi_organism_name: Rhizobium sp. BK456

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Guelph


ncbi_isolation_source: not provided

ncbi_organism_name: Phocaeicola abscessus

ncbi_submitter: EMG


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Arthrobacter sp. UYEF20


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: India

ncbi_organism_name: Xanthomonas citri

ncbi_strain_identifiers: NCPPB 3162

ncbi_submitter: University of Exeter


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Hubei

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp. AF17-9LB

ncbi_submitter: BGI


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Azonexus sp.

ncbi_submitter: Aarhus University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Streptococcus mitis


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: NanJing University


ncbi_country: India: Himalayas

ncbi_isolation_source: glacier

ncbi_organism_name: Solibacillus cecembensis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Kitasatospora sp. CMC57

ncbi_submitter: College of Agriculture, Ibaraki University


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: Iran

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Deparment of Primary Industries NSW


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: Endobronchial tube

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Northwest A&F University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Wuhan Institute of Virology


ncbi_country: India: Shivrajpur coast; Kachhighadi

ncbi_isolation_source: reef

ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: Indonesia Endowment Fund for Education (LPDP)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: HS1 output strain2

ncbi_isolate: HS1 output strain 2

ncbi_organism_name: Helicobacter suis HS1

ncbi_strain_identifiers: HS1 output strain 2

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Air sample from hospital environment

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: CHU A Coruna


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: south china agriculture university


ncbi_country: Uganda: Mbararam

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Venezuela

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical University


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Aequorivita sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Fervidobacterium islandicum

ncbi_submitter: ThermoK


ncbi_organism_name: uncultured Owenweeksia sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Mesorhizobium sp. LjRoot246

ncbi_submitter: Aarhus University


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 6375

ncbi_submitter: University of Warwick


ncbi_organism_name: Clostridioides sp. GD02367

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_submitter: Kyoto University


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Enterobacter cloacae complex sp. IR5433

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5433


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CollaBio Genomics and Bioinformatics Solutions


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Magnetospirillum sp. WYHS-4

ncbi_submitter: Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Research Network Zoonotic Infectious Diseases


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Busan

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: DONG-EUI University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Finland

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


gtdb_type_species_of_genus: t

ncbi_organism_name: Williamsia muralis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Opitutales bacterium UBA6958

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__unclassified Opitutales;s__Opitutales bacterium UBA6958


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_assembly_name: LM06-00983 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Malaysia: Genting

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: University of Texas at Austin


ncbi_country: Ethiopia: Oromiya; S/W/Shewa; Illu

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Pork Curry

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_country: India:New Delhi

ncbi_isolation_source: blood

ncbi_submitter: All India Institute of Medical Sciences


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_organism_name: Rudaea sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: South Korea: Hwasong; Suwon

ncbi_isolation_source: wetland soil

ncbi_organism_name: Microbacterium sp. SSM24

ncbi_submitter: Kyonggi University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Treponema porcinum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Pooled sheep faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: microbial mat

ncbi_organism_name: Synechococcales cyanobacterium PMM_0020

ncbi_submitter: University of Liege


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Pretoria


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Quisquiliibacterium sp.

ncbi_submitter: Stanford University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. CA-111067

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Soochow University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: EMG


ncbi_country: Chile: X Region

ncbi_isolation_source: kidney

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: University of Chile


ncbi_country: Tanzania

ncbi_organism_name: Xanthomonas campestris pv. armoraciae

ncbi_strain_identifiers: NCPPB 347

ncbi_submitter: University of Exeter

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Enterococcus casseliflavus


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Finland

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_country: Pacific Ocean: South Mariana Trough

ncbi_isolation_source: Seawater

ncbi_organism_name: Pseudoalteromonas sp. APM04

ncbi_submitter: Ibaraki University


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Freetown


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Mariane macroalgea Saccharina sp.

ncbi_organism_name: uncultured Aureispira sp.

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 51

ncbi_submitter: SC


ncbi_country: Brazil: Dourados

ncbi_organism_name: Cyanobacteria bacterium OH_CDB_58

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium OH_CDB_58


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0052

ncbi_submitter: Broad Institute


ncbi_isolation_source: Liver cyst

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Pre-slaughter chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: sewage

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Treponema sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: China: Guangxi

ncbi_isolation_source: Sputum; Early isolate from VAP patient 3

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: North Dakota; Cottonwood Lake Study Area

ncbi_isolation_source: Prairie Pothole Region wetland sediments

ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Hujiaoplasma nucleasis

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: urine

ncbi_submitter: Sengenics sdn bhd


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Paracoccus marcusii

ncbi_submitter: Honam National Institute of Biological Resources


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: UIUC


ncbi_organism_name: Streptomyces griseorubens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC059271

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Leifsonia sp. McL0618

ncbi_submitter: New Zealand Forest Research Institute


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridium sp. B9

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Streptomyces sp. NBC_01508

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Aerococcus urinaeequi

ncbi_submitter: JiLin Agricultural Science and Technolog


ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Zurich


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Helicobacter pylori SS1

ncbi_submitter: Elzbieta Brzuszkiewicz, Goettingen Genomics Laboratory, Institute of Microbiology and Genetics, Goettingen, Germany


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of California San Francisco


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yonsei University College of Medicine


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG049

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Spain: Tous; Valencia

ncbi_isolation_source: freshwater reservoir from 12m and 25m depth

ncbi_organism_name: Verrucomicrobia bacterium Tous-C9LFEB

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium Tous-C9LFEB


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_12_FULL_37_14


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College Dublin


ncbi_organism_name: Burkholderia pseudomultivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: The Ohio State University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: South Korea: Hwaseong

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: POSTECH


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Alberta


ncbi_isolation_source: burned soil

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Teeth

ncbi_organism_name: Streptococcus mutans


ncbi_organism_name: Oecophyllibacter saccharovorans

ncbi_submitter: University of Malaya


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: China: Shandong

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi C


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Nocardioides koreensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: SWINE CARCASS

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Burundi: Isare Commune; Bujumbura Province

ncbi_isolation_source: Soil sampled from cultivated land

ncbi_organism_name: Bacillus nakamurai

ncbi_submitter: ACADEMIE DE RECHERCHE ET DE L'ENSEIGNEMENT SUPERIEUR, BELGIQUE


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: tissue from pig

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_assembly_name: Salmonella enterica CVM N32755-R v1.0

ncbi_country: USA: MN

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: China: Beijing

ncbi_isolation_source: pig fecal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Caballeronia glathei

ncbi_submitter: UZH


ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Romania

ncbi_isolation_source: urine

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of pavia


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Nitratiruptor sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Exiguobacterium oxidotolerans

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium oxidotolerans


ncbi_isolate: SPRUCE 72

ncbi_organism_name: Terriglobales bacterium

ncbi_strain_identifiers: SPRUCE 72

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Zhejiang University


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-740

ncbi_organism_name: uncultured Nitrosomonadales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: Tissue Right Shoulder GLENOID MEMBRANE No. 2

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-N17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_submitter: ASCENSION


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio lentus


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Mycobacterium canetti

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Proteus hauseri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Beltsville; MD

ncbi_isolation_source: insect

ncbi_organism_name: Spiroplasma platyhelix PALS-1

ncbi_submitter: Academia Sinica


ncbi_organism_name: Pseudomonas sp. MCal1

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: USA: Los Angeles; CA

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: China: Yangzhou

ncbi_isolation_source: pond

ncbi_organism_name: Chromobacterium haemolyticum

ncbi_submitter: Yangzhou University


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: dried and salted fish product

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Laboratory of food microbiology, Department of food science and technology, Tokyo university of marine science and technology


ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany

ncbi_organism_name: Caryophanon latum

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Serratia sp. CY68210

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY68210


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Tepidisphaeraceae bacterium


ncbi_organism_name: Tunturiibacter psychrotolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Vagococcus salmoninarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JPIAMR ARMIS


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Desulfosporosinus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: feces day 14 after weanning

ncbi_submitter: University of Alberta


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus NBRC 100910


ncbi_country: Japan:mid-Okinawa Trough; Iheya North site

ncbi_isolation_source: ceramic particles

ncbi_organism_name: Methylomarinovum tepidoasis

ncbi_submitter: Super-cutting-edge Grand and Advanced Research (SUGAR) Program, Institute for Extra-cutting-edge Science and Technology Avant-garde Research (X-star), Japan Agency for Marine-Earth Science and Technology


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Dickeya dadantii 3937

ncbi_submitter: International Erwinia Consortium


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: WAGENINGEN UNIVERSITY, LABORATORY OF SYSTEMS AND SYNTHETIC BIOLOGY.


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Micromonospora globbae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: AIMST University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Iowa

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_country: Portugal: S. Sebastiao

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: green alga

ncbi_organism_name: Polaribacter reichenbachii

ncbi_submitter: Korea University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Hunan

ncbi_isolation_source: blood

ncbi_organism_name: Pigmentibacter ruber

ncbi_submitter: Hunan Normal University


ncbi_country: USA: Tryon; SC

ncbi_isolation_source: soil

ncbi_organism_name: Pyxidicoccus parkwayensis

ncbi_submitter: University of Mississippi


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Muribaculum sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: China: Guangzhou

ncbi_organism_name: Morganella morganii

ncbi_submitter: The First Affiliated Hospital of Sun Yat sen University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EBI


ncbi_country: Brazil

ncbi_isolation_source: Ocean Waters

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Metabacillus halosaccharovorans

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Thermotogales bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Methylorubrum thiocyanatum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Ktedonobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-8-3

ncbi_submitter: Curtin University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Spain: Asturias

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Norway

ncbi_isolation_source: blood

ncbi_submitter: St. Olav University Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Loc081215-4m_bin-1926

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Pseudomonadaceae bacterium

ncbi_submitter: EMG


ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: water

ncbi_organism_name: Escherichia sp. 93.0816

ncbi_submitter: FDA


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong university


ncbi_organism_name: Streptomyces sp. NPDC045251

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Samara

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada:Fort McMurray

ncbi_isolation_source: Sand Stone

ncbi_organism_name: Rhodocyclaceae bacterium UBA4002

ncbi_submitter: University of Queensland


ncbi_country: China:Zhejiang Province; Hangzhou

ncbi_isolation_source: rectal swab

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Cattle Hide

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Ethiopia: Tigray; West Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: University Hospital of Larissa


ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Thermosynechococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Singapore General Hospital


ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Stakelama sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Egerieousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Egerieousia;x__unclassified Candidatus Egerieousia;s__Candidatus Egerieousia sp.


ncbi_organism_name: Spongiimicrobium salis

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_isolation_source: faeces

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: USA: Houston

ncbi_isolation_source: Ensiled sorghum

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG13639

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Ziyang City; Sichuan Province

ncbi_isolate: diseased pig

ncbi_isolation_source: Ziyang City

ncbi_organism_name: Streptococcus suis

ncbi_strain_identifiers: diseased pig;ZY05719


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_isolation_source: Cecum

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter fetus

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_country: USA: Cambridge; MA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: MIT


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: The Ohio State University


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG10616

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli KTE104

ncbi_submitter: Broad Institute


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus FVRH6022


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_isolation_source: chicken gut metagenome


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: New Zealand: Mangere

ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: ICMP 7230

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: China Center of Industrial Culture Collection


ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Victivallis sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: Kenya: Masai Mara National Reserve

ncbi_isolation_source: tick on Ceratotherium simum

ncbi_submitter: University of Pavia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Amblyomma nuttalli


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_country: Chile

ncbi_isolation_source: Liver

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: MI

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Vibrio crassostreae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC059352

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: South Korea

ncbi_isolation_source: tongue coating

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: DOCSMEDI Co., Ltd.


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: lower right subgingival plaque

ncbi_organism_name: Streptococcus sp. GMD5S

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptomyces sp. P17

ncbi_submitter: Faculty of Science, University of Pavol Jozef Safarik in Kosice


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium UBA4809


ncbi_assembly_name: Kingella negevensis

ncbi_isolate: Pharynx

ncbi_organism_name: Kingella negevensis

ncbi_strain_identifiers: Pharynx

ncbi_submitter: URMITE


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: no molasses with increasing thiocyanate

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Amycolatopsis sp. NBC_01286

ncbi_submitter: Technical University of Denmark


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Pseudomonas sp. S68

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Caucasica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Coleofasciculaceae cyanobacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Erysipelotrichaceae bacterium UBA6204


ncbi_country: Argentina

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_country: Turkey

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: University of Calgary


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactobacillus panisapium

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Philippines

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: International rice research institute


ncbi_isolation_source: Seawater

ncbi_organism_name: Prescottella equi

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Kenya: Nairobi

ncbi_submitter: Makerere University


ncbi_organism_name: Candidatus Avelusimicrobium sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: China CDC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090519-5m_bin-0564

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella sp. 1SOBk11mer

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Scardovia wiggsiae

ncbi_submitter: Hospital Sirio-Libanes


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. ZJHZ21_0002

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_organism_name: Salmonella sp. s55394


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada:Terrace; Lakelse Hot Spring

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus smithii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Shandong University