ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Pseudorhodoplanes sp.

ncbi_submitter: Northeastern University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: New York state

ncbi_genome_representation: full

ncbi_isolation_source: plant

ncbi_organism_name: Frondihabitans sp. VKM Ac-2883

ncbi_strain_identifiers: VKM Ac-2883

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_assembly_level: Contig

ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Dechloromonas agitata is5

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Limimaricola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Salmonella sp. SC35

ncbi_submitter: Sichuan University


ncbi_assembly_level: Complete Genome

ncbi_country: Pacific Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Prescottella sp. R16

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Australia: NSW

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Pseudomonas qingdaonensis

ncbi_submitter: Max Planck Institute for Biology


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: Christian Medical College


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: EMG


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Geothermobacter hydrogeniphilus

ncbi_submitter: University of Southern California


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Fujian Province

ncbi_isolation_source: marine soil

ncbi_organism_name: Glutamicibacter sp. HZAU

ncbi_strain_identifiers: HZAU

ncbi_submitter: Huazhong Agriculture University


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: South Korea: Pyeongchang

ncbi_isolation_source: Makgeollli

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: LDTM 7301

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Thermoleophilaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Bangladesh

ncbi_organism_name: Shigella flexneri K-404

ncbi_submitter: Institute for Genome Sciences


ncbi_country: France

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: ProBone


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2479

ncbi_submitter: Broad Institute


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-33

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Streptomyces sp. NPDC007851

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Devosia sp.


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_country: Canada: Alberta

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Canada: Alberta; Edmonton

ncbi_isolation_source: amniotic fluid

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: USDA, ARS, WRRC

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: freshwater MAG --- MJ-2014-D5_bin-157

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: Singapore

ncbi_isolation_source: foot wound swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Bifidobacterium sp. ESL0798

ncbi_submitter: University of Lausanne


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Portland State University


ncbi_assembly_name: freshwater MAG --- Kiruna3_bin-2602

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_organism_name: Streptomyces sp. NPDC057403

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Salmonella sp. ZJHZ20_0013

ncbi_submitter: Zhejiang university


ncbi_organism_name: Succiniclasticum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Kyungpook National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eisenbergiella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: isolate VK_6

ncbi_isolate: Lactobacillus plantarum VK-6

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: Lactobacillus plantarum VK-6

ncbi_submitter: University of Tartu


ncbi_organism_name: Kineococcus gynurae

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Nocardioides sp. NPDC057772


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Salmonella sp. SKLX100716


ncbi_isolation_source: freshwater metagenome


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: EMG


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: dianzhenduan


ncbi_assembly_level: Chromosome

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M1129

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Cellulomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Spain: Bilbao

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


gtdb_type_species_of_genus: t

ncbi_isolation_source: a cooking wastewater

ncbi_organism_name: Paradevosia shaoguanensis

ncbi_submitter: Academy of National Food and Strategic Reserves Administration


ncbi_isolate: AOP33_4_coeur _bin _9

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: AOP33_4_coeur _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Anaerostipes sp. MSJ-23

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroides caecimuris


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Washington

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Nannocystis exedens


ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. HLT2-28

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Hyphomonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_submitter: the hong kong university of science and technology


ncbi_assembly_name: IMG-taxon 2728369725 annotated assembly

ncbi_organism_name: Streptomyces sp. 1222.2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Legionella pneumophila subsp. raphaeli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Animal-Swine-Roaster Swine

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium UBA5014


ncbi_assembly_name: freshwater MAG --- C24_bin-2235

ncbi_isolation_source: pond

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S007_61883


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: India: Mahanadi River; Cuttack

ncbi_isolation_source: puffer fish skin

ncbi_organism_name: Acinetobacter kanungonis

ncbi_submitter: Institute of Life Sciences


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 16

ncbi_submitter: Chung-Ang University


ncbi_country: Greece

ncbi_isolation_source: Eastern Mediterranean water

ncbi_organism_name: Pseudoalteromonas sp. ND6B

ncbi_submitter: Oak Ridge National Lab


ncbi_country: USA: Anza-Borrego Desert; California

ncbi_organism_name: Neorhizobium sp. S3-V5DH

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Mali

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter radioresistens


ncbi_isolation_source: rice leaves

ncbi_organism_name: Citrobacter sp. BDA59-3

ncbi_submitter: University of Florence


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: DC

ncbi_isolation_source: Abscess

ncbi_organism_name: Enterococcus avium

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7132

ncbi_submitter: University of Queensland


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: University of Regina

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Salmonella enterica

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Streptomyces griseoaurantiacus

ncbi_submitter: Technical University of Denmark


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Crystallibacter crystallopoietes

ncbi_submitter: Kyungpook National University


ncbi_country: Austria

ncbi_isolation_source: nasal

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: AGES


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: sewage water

ncbi_organism_name: Stenotrophomonas sp. G4

ncbi_submitter: Shandong Academy of Medical Sciences


ncbi_country: Russia

ncbi_organism_name: Yersinia pestis

ncbi_submitter: RARI


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Kineococcus sp. SYSU DK032

ncbi_strain_identifiers: SYSU DK032

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_submitter: University of Foggia


ncbi_organism_name: Enterococcus sp. DIV0098

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Gardnerella leopoldii

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Terrisporobacter sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Kistimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Salmonella sp. NW404

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudooceanicola sp.

ncbi_submitter: Tsinghua University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of verona


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-369

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-369


ncbi_country: USA: Pennsylvania Powdermill Nature Reserve

ncbi_isolation_source: fungal plug from cicada Magicicada septendecim abdomen

ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: University of California, Riverside


ncbi_assembly_name: Rumen uncultured genome RUG11893

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Atopobium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Alabama

ncbi_isolation_source: top soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Frankiaceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: foot ulcer

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pennsylvania


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1452

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus sp. FSL W8-0510

ncbi_submitter: Penn State


ncbi_organism_name: Acinetobacter johnsonii


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA07

ncbi_submitter: Broad Institute


ncbi_isolation_source: ballast tank

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: Shandong university


ncbi_country: China:Hubei; Xiaogan

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Alteromonas sp. 14N.309.X.WAT.G.H12

ncbi_submitter: MIT


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: China: Hangzhou

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Tenacibaculum mesophilum

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: Bibersteinia trehalosi

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India:Khoksar; Lahual & Spiti Valley

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_strain_identifiers: BIHB 1217

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: SC


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: rhizome tissue

ncbi_organism_name: Streptomyces zingiberis

ncbi_strain_identifiers: PLAI 1-29

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: This genome was reconstructed from an aerobic pyrene degrading enrichment culture grown from soil-compost microcosms; as described in Adam I.K. et al.; under review. An uncontaminated and unfertilized agricultural soil (Ap horizon of a Haplic Chernozem) of the Static Fertilization Experiment Bad Lauchstadt (Germany) was supplemented with mature compost (Bio-Komp SAS Gmbh; Weizenfels; Germany) for biostimulation; the compost consisted of a mixture of vegetable and animal organic waste. Two stable enrichment cultures (UC1 and UC10) capable of total pyrene (spiked at a concentration of 100 mg/L) mineralization were obtained from the microscosm and shotgun sequenced (see Adam I.K. et al.; under review 2016).

ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Germany: Kassel

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: France

ncbi_isolation_source: human isolate

ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: CIRM-BIA 441

ncbi_submitter: Brigham Young University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFCSPLOWO2_01_FULL_44_84


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Harryflintia sp.


ncbi_country: China: Beijing

ncbi_isolation_source: gut

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Mexico

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2101


ncbi_organism_name: Morganella morganii

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces anthocyanicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: BIFSCo Region 5

ncbi_isolation_source: bovine peripheral lymph node

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. USDA-ARS-USMARC-1901


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces griseicoloratus

ncbi_strain_identifiers: TRM S81-3

ncbi_submitter: College of Life Science


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Novosphingobium sp. EMRT-2

ncbi_submitter: Nakdonggang National Institute of Biological Resource


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA11663

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_country: USA: New York; NY

ncbi_isolation_source: selected on BioAMS

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Texas A&M University


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: milk products

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Brigham Young University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: caecum

ncbi_organism_name: Oceanobacillus oncorhynchi

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Texas

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Texas Health Science Center


ncbi_country: China: Chongqing

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: Sediment

ncbi_submitter: UNIVERSITY OF WARWICK


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Streptomyces sp. NPDC102490

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lutibacter sp.

ncbi_submitter: CNRS UMR6197


ncbi_organism_name: Rickettsia rickettsii

ncbi_strain_identifiers: El Moro Canyon

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Streptomyces sp. NPDC087216


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Polyangiales bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of West London


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Macao

ncbi_isolation_source: Fired rice

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0321

ncbi_submitter: Broad Institute


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: addis ababa university


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: BGI


ncbi_organism_name: Clostridium sp. UBA7791

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangzhou

ncbi_isolation_source: Kefir

ncbi_organism_name: Lacticaseibacillus paracasei subsp. tolerans

ncbi_submitter: Guangdong Provincial Key Laboratory of Nutraceuticals and Functional Foods


ncbi_organism_name: Ellagibacter isourolithinifaciens


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: AAFC


ncbi_organism_name: Spirochaetales bacterium


ncbi_organism_name: Nannocystaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: Olga Maine

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: Dutton Lab, UCSD


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Copenhagen


ncbi_country: Greece: Thessaloniki; Nea Apollonia

ncbi_isolation_source: Water

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Streptomyces mobaraensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Yunnan

ncbi_isolation_source: Rice flour product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfitobacteriaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: UCC Isolate

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Thiomicrospira sp. CG2_30_44_34

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Enterobacter hormaechei


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_country: USA

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 20cm depth; 4 days after first rain event (27mm)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokubacteria bacterium 13_1_20CM_2_68_19


ncbi_country: Germany: Ostrau

ncbi_isolation_source: contaminant of Thiospirillum jenense DSM216 culture

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Bellevue University


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: New Zealand

ncbi_isolation_source: kiwi fruit

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 19497


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_submitter: Brighton and Sussex Medical School


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Xanthomonas campestris pv. phormiicola

ncbi_strain_identifiers: CFBP 8444

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Candidatus Seribacter sulfatis

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Candidatus Seribacteraceae;g__Candidatus Seribacter;s__Candidatus Seribacter sulfatis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;f__Candidatus Seribacteraceae;g__Candidatus Seribacter;s__Candidatus Seribacter sulfatis


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Iceland: Mulakvisl; Kotlujokull Glacier

ncbi_isolation_source: nitrate amended sediment enrichment culture

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Montana State University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Umatilla County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1C7

ncbi_submitter: Oregon State University


ncbi_country: Switzerland

ncbi_isolation_source: Animal feed

ncbi_submitter: CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Buchnera aphidicola (Greenidea ficicola)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: Streptococcus mitis

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMG


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: South Africa

ncbi_organism_name: Escherichia coli

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Fluviicola sp.

ncbi_submitter: Guangxi University


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Portugal

ncbi_isolation_source: Halimione portulacoides surface

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade de Aveiro


ncbi_country: Australia: Sydney

ncbi_isolation_source: feces

ncbi_submitter: The University of Sydney


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Spain

ncbi_isolation_source: Mussels

ncbi_organism_name: Malaciobacter mytili LMG 24559

ncbi_strain_identifiers: CECT 7386

ncbi_submitter: Universitat Rovira i Virgili


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Mesorhizobium sp. Root554

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: University of Minnesota


ncbi_country: China: Zhuhai

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jinan University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_country: China: Qingdao

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Kulunda Steppe; Altai region

ncbi_isolation_source: Hypersaline soda lake Bitter-1

ncbi_organism_name: Natranaerofaba carboxydovora

ncbi_submitter: Wageningen University and Research


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: Loyalsock Creek; Montoursville

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium sp. ENC

ncbi_strain_identifiers: ENC

ncbi_submitter: Lycoming College


ncbi_country: Thailand: Prachuap Khiri Khan

ncbi_isolation_source: seed

ncbi_organism_name: Enterobacter sp. RD4-1-1

ncbi_submitter: Silpakorn University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: 2-3 km off coast sea water; Valencia

ncbi_organism_name: Thalassobacter stenotrophicus

ncbi_strain_identifiers: CECT 5294

ncbi_submitter: UVEG


ncbi_country: China: Beijing

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: South Korea: Gwangyang Bay

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudidiomarina aestuarii

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: Japan

ncbi_isolation_source: feces; 4 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: surface-sterilized seed

ncbi_organism_name: Xanthomonas sp. SHU 166

ncbi_strain_identifiers: SHU 166

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Nannocystaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: Guangzhou University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Erysipelotrichales bacterium


ncbi_isolate: AOP7_A1_surf _bin _8

ncbi_organism_name: Marinomonas polaris

ncbi_strain_identifiers: AOP7_A1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: SPRUCE 207

ncbi_organism_name: Spirochaetia bacterium

ncbi_strain_identifiers: SPRUCE 207

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Bacteroides fragilis


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Colombia: Valle

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Paracoccus haeundaensis

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: Brazil: Tocantins

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Rumen uncultured genome RUG10377

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea

ncbi_organism_name: Roseobacter sp. MH60115

ncbi_submitter: Kyonggi university


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_country: Germany

ncbi_isolation_source: Foci

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland

ncbi_organism_name: Hafnia alvei

ncbi_submitter: nankai university


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium bifidum


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: marine

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Hydrogenophilus sp.

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: PA

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paraprevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Thiomicrolovo immobilis

ncbi_submitter: Third institute of oceanography, State Oceanic Administration


ncbi_isolation_source: human skin

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: NIH/NHGRI


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG10454

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Taizhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Guelph

ncbi_isolation_source: paw

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M13099

ncbi_submitter: Broad Institute


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus suaedaesalsae

ncbi_submitter: Bacillus sp. RD4P76


ncbi_organism_name: Faecalibacterium sp. CAG:74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Germany: Kieler Foerde

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_organism_name: Agathobacter sp.


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Japan

ncbi_isolation_source: sand

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Gunma University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Winogradskyella echinorum

ncbi_submitter: ocean university of China


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric corpus Patient476

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Salinicoccus sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital


ncbi_isolation_source: vagina

ncbi_organism_name: Corynebacterium sp. CMW7794

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__candidate division TM6 bacterium GW2011_GWF2_28_16


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Dysgonamonadaceae bacterium


ncbi_isolation_source: environment

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Jiaxing

ncbi_isolation_source: sputum

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Nasopharygneal lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_country: France: Baie de la Fresnaye

ncbi_isolation_source: river surface water

ncbi_organism_name: Campylobacter armoricus

ncbi_submitter: French research institute for exploitation of the sea (IFREMER)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Niger

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 2004085

ncbi_submitter: IGS


ncbi_country: Chile: Santiago

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: University of Maryland School of Medicine, Institute for Genome Sciences


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 42057_3

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Brazil

ncbi_isolation_source: pecked egg organ

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: New York City

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Columbia University Medical Center


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Fonte Boa; AM

ncbi_isolation_source: tree

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: San Diego State University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Aquamicrobium segne

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces sp. NPDC060184

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: UIUC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Lapillicoccus sp.

ncbi_submitter: Monash University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: bacterium UBA2214

ncbi_submitter: University of Queensland


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_assembly_name: Rumen uncultured genome RUG14850

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Wyoming


ncbi_organism_name: Brucella anthropi


ncbi_organism_name: Microbulbifer epialgicus

ncbi_submitter: Shanghai Jiao Tong University, Shanghai


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: biogas fermenter

ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Rhodococcus sp. Leaf247

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. Leaf247


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetales bacterium UBA6847


ncbi_organism_name: uncultured Lentisphaera sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_submitter: University of Leicester


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_country: China

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: Zhejiang university

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: metagenome

ncbi_organism_name: Flavonifractor sp. An10


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Kocuria sp.

ncbi_submitter: Center for Bioinformatics


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Chengdu

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Inha University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus

ncbi_submitter: Keio University


ncbi_strain_identifiers: BKKF 69

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Vom


ncbi_organism_name: uncultured Traorella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Rock Key; Florida

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_37_12


ncbi_country: USA: Goucher College; Baltimore; Maryland

ncbi_isolation_source: skin mucus

ncbi_organism_name: Pseudomonas sp. 32.2.56

ncbi_submitter: Goucher College


ncbi_isolation_source: river

ncbi_organism_name: Permianibacter fluminis


ncbi_country: Ireland

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: yoghurt

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Harbin Institute of Technology


ncbi_organism_name: uncultured Desulfarculus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: United Arab Emirates: Ras Al Khaimah

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Phytobacter diazotrophicus

ncbi_submitter: UAE University


ncbi_country: Turkey

ncbi_isolation_source: Poultry flock base material and dust

ncbi_strain_identifiers: TR01 Mutant

ncbi_submitter: Ankara University Faculty of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_submitter: University of Zurich


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-124

ncbi_submitter: Arkin Lab


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: South Korea: Jeju

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Government of Canada


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Streptococcus pyogenes STAB901

ncbi_submitter: Bacteriology Service, CHU Pontchaillou Rennes, France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus pyogenes;x__Streptococcus pyogenes serotype M44;x__Streptococcus pyogenes STAB901


ncbi_country: USA: San Bernardino County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: livestock

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: USA: San Marcos; TX

ncbi_isolation_source: Wild adult 1.1

ncbi_organism_name: Bacillus sp. S0635

ncbi_submitter: Texas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S0635


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Rhodoplanes sp.


ncbi_submitter: University of the Witwatersrand


ncbi_organism_name: Sulfurirhabdus sp.

ncbi_submitter: EPFL


ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_submitter: Capital Institute of Pediatrics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RBG_16_49_23


ncbi_organism_name: Agromyces sp. GXQ0307

ncbi_submitter: Guangxi Minzu University


ncbi_organism_name: Klebsiella sp. ALX55

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Streptomyces sp. NPDC014777


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Antarctica: Mackay Glacier regions; Mackay Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_country: Russia: Uzon Caldera; Kamchatka; Arkashin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Hydrogenobaculum sp.

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_assembly_name: Rumen uncultured genome RUG14916

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute for Communicable Disease


ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: EL

ncbi_submitter: Politechnika Lodzka

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: Wroclaw University of Environmental and Life Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: US DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kineosporiales;f__Kineosporiaceae;g__Kineococcus;s__Kineococcus radiotolerans;x__Kineococcus radiotolerans SRS30216 = ATCC BAA-149


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Belarus

ncbi_isolation_source: human gut

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: freshwater MAG --- Loclat_bin-14305

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: BILS


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Massilia sp. H6

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Paenimyroides viscosum

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Hertfordshire

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Middle Meatus

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-03370

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: France

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Raw sewer was diluted in sterile water at 1/10 dilution before isolation

ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: Health Sciences North Research Institute


ncbi_country: Portugal

ncbi_isolation_source: pus

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Minas Gerais


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Creighton University


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_country: USA: IL

ncbi_isolation_source: Core; Corn

ncbi_organism_name: Bacillus sp. AFS043905

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS043905


ncbi_assembly_name: IMG-taxon 2599185163 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFPP12

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: CA

ncbi_isolation_source: frozen vegetable

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Sydney

ncbi_isolation_source: Oral cavity

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: RIKEN BioResource Research Center


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_submitter: University of Trento


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurellales bacterium

ncbi_submitter: Portland State University


ncbi_country: United Kingdom

ncbi_isolation_source: garam masala hot spice mixture

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Pirellula sp.

ncbi_submitter: EPFL


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium CG_4_9_14_3_um_filter_43_20


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Campbellbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;x__unclassified Candidatus Campbellbacteria;s__Candidatus Campbellbacteria bacterium


ncbi_organism_name: Alloalcanivorax sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Escherichia coli

ncbi_submitter: National University Of The Inner Mongol


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-0033

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Poland: Ostroda

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: Cabernet Sauvignon

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Desemzia incerta

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Pseudoalteromonas holothuriae

ncbi_submitter: Institut Pasteur


ncbi_country: China: Liaoning

ncbi_isolation_source: lung

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acinetobacter pittii


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chthoniobacter flavus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Peking

ncbi_isolation_source: Hair cutting kit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: China Medical University


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: De novo assembly of KCRI isolate R0004_115

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: Escherichia coli CVM N36613PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N36613PS

ncbi_submitter: FDA


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: USA: Tattnall County; Georgia

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: jaw abscess

ncbi_organism_name: Fusobacterium necrophorum DAB

ncbi_strain_identifiers: DAB

ncbi_submitter: Newport Laboratories, A Sanofi Company


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Columbia University Medical Center


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: Market

ncbi_organism_name: Aeromonas dhakensis

ncbi_strain_identifiers: Igbk

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Labedella sp.


ncbi_country: China: Anhui

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_country: Japan

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 8864

ncbi_submitter: University of Exeter


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Romania

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis 3499MM

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade do Estado do Rio de Janeiro