ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Georgia Institute of Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Cambodia: Phnom Penh

ncbi_genome_representation: full

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Institute of Quality Standards & Testing Technology for Agro-Products


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Hong Kong

ncbi_isolation_source: clinical specimen

ncbi_organism_name: Staphylococcus lugdunensis HKU09-01

ncbi_submitter: The University of Hong Kong


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Synechococcales cyanobacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Polynucleobacter sp.


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: breast milk

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: IGA Technology Services Srl


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Puerto Rico: Maunabo

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_country: Germany

ncbi_organism_name: Rodentibacter pneumotropicus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: Ethiopia: Oromiya; Bale; Goro

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: South Korea

ncbi_isolation_source: Gut of a kumgang fat minnow

ncbi_organism_name: Deefgea piscis

ncbi_submitter: Kyunghee University


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: Jeotgal

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: whole body

ncbi_organism_name: Serratia symbiotica

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: drinking fountain drain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola


ncbi_country: Singapore

ncbi_isolation_source: wet market

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_country: Canada: Alberta

ncbi_isolation_source: Vacuum-packaged pork

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Sphingomonas faeni

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderia sp. ABCPW 11

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: Japan: AIST Tsukuba

ncbi_isolation_source: bottom mud of the soda-depositing Lake

ncbi_organism_name: Natroniella acetigena

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella enterica subsp. salamae

ncbi_strain_identifiers: CCUG 30039T

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Carnimonas nigrificans ATCC BAA-78

ncbi_strain_identifiers: ATCC BAA-78


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: urine

ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto de Higiene


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Sulfuritalea sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Colorado

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Colorado Boulder


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: France

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Italy

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: HPA 17

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Candidatus Choladousia intestinavium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladousia;s__Candidatus Choladousia intestinavium


ncbi_country: Malaysia

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Sphingomonas sanguinis NBRC 13937

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG1

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Niabella sp.

ncbi_strain_identifiers: labscale reactor_MAG1

ncbi_submitter: TU Delft


ncbi_country: Austria: Creek Waldbach near Seekirchen (town)

ncbi_isolation_source: creek; freshwater

ncbi_organism_name: Polynucleobacter sp. 71A-WALBACH

ncbi_submitter: University of Innsbruck


ncbi_country: Nigeria

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. AM41-2BH

ncbi_submitter: BGI


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0286

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: guttural pouch lavage

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12679

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Sellimonas intestinalis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Bacteroidales bacterium UBA4173

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4173


ncbi_isolation_source: rumen

ncbi_organism_name: Olsenella sp. UBA2898


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Xiaoshan No.3 People's Hospital


ncbi_country: Denmark

ncbi_isolation_source: cleaning system aquaculture

ncbi_organism_name: Phaeobacter piscinae

ncbi_submitter: Leibniz Institute DSMZ


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Menston


ncbi_organism_name: Flavisolibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: India: Pentha Beach; Odisha

ncbi_isolation_source: soil

ncbi_organism_name: Halomonas icarae

ncbi_submitter: ICAR-National Bureau of Agriculturally Important Microorganisms


ncbi_organism_name: Alcanivorax jadensis

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents of Marmot

ncbi_organism_name: Arthrobacter sp. zg-Y20

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: University of central Florida


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Sciensano


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Canada: Wauchope; Saskatchewan

ncbi_isolation_source: seed

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Lethbridge Research Centre


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Agrobacterium sp. UNC420CL41Cvi

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Arthrobacter sp. efr-133-R2A-63

ncbi_submitter: University of Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria lactamica


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03817

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: pig gut metagenome


ncbi_country: USA: IL

ncbi_submitter: Cornell University


ncbi_country: USA

ncbi_isolation_source: Tissue Right Shoulder COLLAR MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: Russia: Orenburg

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Institute for Cellular and Intracellular Symbiosis


ncbi_isolation_source: PLEURAL FLUID

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Yunnan; China

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Switzerland: Taegertschen

ncbi_isolation_source: raw milk cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Agroscope


ncbi_country: Canada: Alberta

ncbi_isolation_source: beef fabrication equipment surface

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: Sil RS 8

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Food Safety


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of East Anglia


ncbi_assembly_level: Chromosome

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: University of Bern


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Uniformed Services University


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_organism_name: Microbacterium testaceum


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterobacter hormaechei

ncbi_strain_identifiers: SD 70

ncbi_submitter: Pharmacy faculty


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Kappeln; coastal zone baltic sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Zobellia sp. OII3

ncbi_submitter: University of Bonn


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Acinetobacter sp. MYb10

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Canada: ON

ncbi_isolation_source: tissue

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_submitter: University of Queensland


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Gansu Agricultural University


ncbi_country: USA: Walter Reed Army Medical Center; Washington; DC

ncbi_organism_name: Acinetobacter baumannii WC-A-694

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Madagascar: Antsirabe

ncbi_isolation_source: sheath brown rot lesion on the rice type IRRI Elite

ncbi_organism_name: Pseudomonas fuscovaginae UPB0736

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Cecum

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Church and Dwight


ncbi_country: China: Zhumadian

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NEAU-H3

ncbi_submitter: School of life science


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: China: inner Mongolian

ncbi_isolation_source: culture medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Glutamicibacter ardleyensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_assembly_name: Brucella abortus I-181

ncbi_country: Russia

ncbi_isolation_source: blood

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium mantenii

ncbi_submitter: JCVI


ncbi_organism_name: Mycobacterium tuberculosis variant bovis

ncbi_submitter: URMITE


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Bacteroides sp. 41_26


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcaceae cyanobacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual K

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 110


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Ethiopia: Oromia; West Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: Veterinary Diagnostic

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: EMG


ncbi_country: Turkey: Samsun

ncbi_organism_name: Streptomyces sp. B15

ncbi_submitter: Ondokuz Mayis University


ncbi_country: Palau

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gordonia sp. CNJ-863

ncbi_submitter: Scripps Institution of Oceanography, UCSD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. CNJ-863


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: China: Xinjiang

ncbi_isolation_source: forest

ncbi_organism_name: Litoribacter populi

ncbi_submitter: Institute of Microbiology


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Oerskovia sp. Root918

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: microbial

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_country: Poland: North-East

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_country: Germany

ncbi_isolation_source: cloacal swab

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: QC

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China

ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_organism_name: Streptomyces nigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC087290


ncbi_organism_name: Streptomyces sp. NPDC006465


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: urine

ncbi_submitter: Institute for medical research


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Oregon State University


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Water

ncbi_organism_name: Citrobacter youngae

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: The sample was isolated from cell culture after 26 month of microevolution experiment

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Fraunhofer IGB


ncbi_organism_name: Tetragenococcus solitarius

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: China CDC


ncbi_country: United Kingdom

ncbi_isolation_source: nail pus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Yantai

ncbi_organism_name: Marinomonas transparens

ncbi_submitter: Xinxiang Medical University


ncbi_country: Antarctica

ncbi_isolation_source: Antarctic intertidal sandy sediment

ncbi_organism_name: Changchengzhania lutea

ncbi_submitter: State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center, Shandong Univers


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Intrasporangiaceae bacterium

ncbi_submitter: Michigan State University


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Dokdonia sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: EMG


ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Greece

ncbi_organism_name: Escherichia coli

ncbi_submitter: UiT-The Arctic University of Norway


ncbi_organism_name: Brucella sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_strain_identifiers: CFBP 6927

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium genomosp. 13;x__Agrobacterium genomosp. 13 str. CFBP 6927


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Knoellia locipacati

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: bglFP 6752

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_organism_name: Rhizobium giardinii

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Agathobaculum sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Chelsea; ME

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: The Research Institute at Nationwide Children's Hospital


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Shiraz

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Netherlands

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Trichocoleus sp. FACHB-6

ncbi_submitter: South China Normal University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces


ncbi_organism_name: Candidatus Coatesbacteria bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Coatesiibacteriota;x__unclassified Candidatus Coatesbacteria;s__Candidatus Coatesbacteria bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: Bangladesh: Mathbaria

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Bordetella bronchiseptica MBORD849

ncbi_submitter: JCVI


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: Norway: Bergen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: China: Qinghai Province

ncbi_organism_name: Corynebacterium liangguodongii

ncbi_submitter: Chinese center for disease control and prevention


ncbi_country: China: JiangSu

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Italy: Montalto di Castro (VT)

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Heliobacteriaceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Capnocytophaga sputigena

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas sp. 6O

ncbi_submitter: University of Malaya


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium matruchotii


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Slackia exigua

ncbi_submitter: China CDC


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Paenibacillus apiarius

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: South Africa: Mafikeng; Mafikeng Provincial Hospital

ncbi_isolation_source: diarrhea sample from child under the age of five

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-west University


ncbi_country: USA: New York

ncbi_submitter: Newcastle University


ncbi_country: Pakistan

ncbi_isolation_source: stool from child

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lurie Children's/Northwestern


ncbi_isolation_source: activated sludge

ncbi_organism_name: Serratia sp. Z4

ncbi_submitter: Wenzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. Z4


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Vibrio neocaledonicus

ncbi_submitter: Universidad de los Andes


ncbi_isolation_source: mussel shell (raw)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Seoul

ncbi_isolation_source: School cafeteria

ncbi_submitter: Chungnam National University


ncbi_organism_name: Dubosiella newyorkensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0721

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: EMG


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_isolation_source: Hand Swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Odoribacter laneus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea

ncbi_organism_name: Iodobacter ciconiae

ncbi_submitter: Kyung Hee University


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_strain_identifiers: CEIB S5-2

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_organism_name: Mesorhizobium sp. M0959

ncbi_submitter: Washington State University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pedobacter suwonensis


ncbi_country: Hong Kong: Institute for Bioresource and Agriculture; Hong Kong Baptist University

ncbi_isolation_source: Food Waste

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Hong Kong Baptist University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Faecalibacterium sp. CAG:74

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Czech Republic

ncbi_isolation_source: large intestine contents

ncbi_organism_name: Bifidobacterium apri

ncbi_submitter: University of Parma


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Thailand: Chachoengsao

ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: Chulalongkorn University


ncbi_assembly_name: freshwater MAG --- LinL5_bin-0556

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: Pork Chop

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Jiuan Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D8_bin-1660

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: Sulfitobacter sp. CS16

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Aeromonas media

ncbi_submitter: Xiamen University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella sp. SKLX080289

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9069

ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Umea3_bin-1372


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Walter Reed Army Medical Center; Washington; DC

ncbi_organism_name: Acinetobacter baumannii OIFC109

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Bangladesh

ncbi_isolation_source: Animal rearing facility

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bangladesh Agricultural University (BAU)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: Japan

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Niigata University School of Medicine


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Tartu


ncbi_organism_name: Christensenella sp.

ncbi_submitter: China Agricultural University


ncbi_country: India: Bikaner

ncbi_isolation_source: C1 compartment fluid of stomach

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: ICAR-National Research Centre on Camel


ncbi_organism_name: Schleiferilactobacillus harbinensis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China

ncbi_isolation_source: tissue cell

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID337

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Philippines

ncbi_isolation_source: stool sample from diarrheal patients

ncbi_organism_name: Vibrio cholerae PhVC-326

ncbi_submitter: CosmosID


ncbi_assembly_name: De novo assembly of KCRI isolate RDK39_22

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: US Food and Drug Administration


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA6884

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6884


ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_isolation_source: Rectum

ncbi_submitter: Erasmus University Medical Center


ncbi_country: United Kingdom: London

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Imperial College London


ncbi_country: Singapore

ncbi_isolation_source: environment

ncbi_organism_name: Aeromonas sp. MaB10011B

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine sample

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Panama: Boco del Toro

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Symploca sp. SIO2C1

ncbi_submitter: UCSD


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Washington


ncbi_assembly_name: De novo assembly of KCRI isolate RDK06_431D

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Nitriliruptorales bacterium

ncbi_submitter: Princeton University


ncbi_organism_name: Caenispirillum bisanense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Streptomyces brasiliscabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Austria: Vienna

ncbi_isolation_source: 10 mM sulfoquinovose-amended vegetarian human fecal microcosm

ncbi_organism_name: Dorea sp.

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Hungary: Zempln Mountain

ncbi_isolation_source: caecum

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Hungarian University of Agriculture and Life Sciences


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_organism_name: Marivivens sp.

ncbi_submitter: Stanford University


ncbi_organism_name: Bacillus sp. JJ269

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ269


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter sp. GD04021

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: feces

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: USA: Corvallis; Oregon

ncbi_isolation_source: Oregon greenhouse population

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wPpe

ncbi_submitter: Oregon State University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Antarctica

ncbi_isolation_source: Soil

ncbi_organism_name: Pedobacter sp. PACM 27299

ncbi_submitter: Chung-Ang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;f__Sphingobacteriaceae;g__Pedobacter;x__unclassified Pedobacter;s__Pedobacter sp. PACM 27299


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Duck Key; FL

ncbi_isolation_source: marine benthic mats

ncbi_organism_name: Roseofilum capinflatum BLCC-M114

ncbi_submitter: University of Florida


ncbi_isolation_source: blood

ncbi_submitter: Jinan University


ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Pseudoxanthomonas spadix

ncbi_submitter: nanjing agriculture university


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cheese production

ncbi_submitter: MICALIS INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris A76


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-005

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD12

ncbi_submitter: Broad Institute


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Pseudomonas grandcourensis

ncbi_submitter: University of Lausanne


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Ireland

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: MD

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: Catch basin

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus


ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_submitter: DTU Bioinformatics


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter chenwenxiniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Sphingobacteriaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC086010


ncbi_submitter: The University of Melbourne


ncbi_country: Italy

ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia

ncbi_isolation_source: Chardonnay

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_organism_name: Tepidiforma thermophila

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Vulcanococcus limneticus LL

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Yangzhou University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gemmatimonadota bacterium


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: KAIST


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Ottowia caeni

ncbi_submitter: Chung-Ang university


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS CTRL-27

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS CTRL-27

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Bacillus stratosphericus

ncbi_submitter: University of Malaya


ncbi_country: China: Henan

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Thermoflexaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: TX; Imperial

ncbi_isolation_source: permian groundwater collected from Pecos Cenozoic Trough

ncbi_organism_name: Permianibacter aggregans

ncbi_submitter: Shantou University


ncbi_country: India: Athamallik; Odisha

ncbi_isolation_source: natural spring water

ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Institute of Life Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: gut

ncbi_organism_name: Enterococcus faecalis TX1467

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_isolation_source: seawater collected from a tide pool

ncbi_organism_name: Leisingera methylohalidivorans DSM 14336

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Wuhan

ncbi_isolation_source: sludge

ncbi_organism_name: Rhodococcus sp. HS-D2

ncbi_submitter: Central China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. HS-D2


ncbi_country: Turkey: Adiyaman; Besni

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Egypt

ncbi_organism_name: Brucella melitensis

ncbi_submitter: cBio Corp


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptomyces plicatus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Morganella morganii

ncbi_submitter: Agroscope


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Allomuricauda sp. M10

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Gennova Biopharmaceuticals Ltd


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: USA: NY

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus DAR2000

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom: London

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: lake water

ncbi_organism_name: Haliscomenobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Chile: Santiago

ncbi_isolation_source: Ground Beef

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_country: Mali

ncbi_isolation_source: feces


ncbi_organism_name: Achromobacter aegrifaciens

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Avigastranaerophilus;s__Candidatus Avigastranaerophilus faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Avigastranaerophilus;s__Candidatus Avigastranaerophilus faecigallinarum


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: Ileo-caecum


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Loyola University Chicago


ncbi_country: Bangladesh: Morrleganj; Bagerhat

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Dhaka


ncbi_isolation_source: groundwater

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mucilaginibacter sp. L294

ncbi_submitter: Institute of Microbiology of the ASCR


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: EMG


ncbi_isolation_source: Caecum


ncbi_isolation_source: kimchi

ncbi_organism_name: Weissella koreensis KACC 15510

ncbi_submitter: Chung-Ang Univ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Weissella;s__Weissella koreensis;x__Weissella koreensis KACC 15510


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Division of Infection Control and Prevention, Medical Mycology Research Center, Chiba University


ncbi_organism_name: uncultured Desulfobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Enterococcus faecalis ATCC 29200

ncbi_submitter: Broad Institute


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus pneumoniae PNI0002

ncbi_submitter: Washington University


ncbi_country: China: Wenchang city; Hainan province

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Chinese Academy of Fishery Sciences


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: intestine tissue

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_isolation_source: water

ncbi_organism_name: Janthinobacterium sp. SUN206

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_isolation_source: Faeces


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Ohio

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Capnocytophaga cynodegmi

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Saprospira sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Fudan University Shanghai Cancer Center


ncbi_country: USA: CA; University Health Center

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_country: Israel: Tel-Aviv

ncbi_submitter: Tel-Aviv University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_isolation_source: milk

ncbi_submitter: University of queensland


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: China: the East China Sea

ncbi_isolation_source: enrichment culture inoculated with surface estuarine sediment

ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: Shanghai Jiao Tong University (SJTU)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes shahii


ncbi_country: Hungary

ncbi_organism_name: Rhizobium sp. SG_E_25_P2

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Sphingomonas sp. 179-I 2A4 NHS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Sphingomonas;x__unclassified Sphingomonas;s__Sphingomonas sp. 179-I 2A4 NHS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Mesorhizobium newzealandense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_organism_name: Chromohalobacter beijerinckii


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella sp. SKLX063870

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Staphylococcus borealis

ncbi_submitter: Universidad de La Rioja


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Belgium

ncbi_isolation_source: diseased fish

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Laboratory of Aquaculture & Artemia Reference Center, Ghent University


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: seawater

ncbi_organism_name: Rhodococcus sp. EPR-134

ncbi_submitter: Zhejiang Wanli University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. EPR-134


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Malaysia

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: China: Yushu Tibetan Autonomous Prefecture; Qinghai Province

ncbi_isolation_source: plants of Tibetan plateau

ncbi_organism_name: Nocardioides dongxiaopingii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Flavobacterium sp. CFS9

ncbi_submitter: Mie University


ncbi_country: USA: Bloomington Illinois

ncbi_isolation_source: Urban topsoil

ncbi_organism_name: Massilia sp. AB1

ncbi_submitter: Illinois Wesleyan University


ncbi_organism_name: Providencia vermicola

ncbi_submitter: University of Oxford


ncbi_organism_name: Streptomyces misionensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Belgium: Wallonia

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_country: South Korea: Seoul

ncbi_isolation_source: Korean adult feces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: France

ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Egypt

ncbi_isolation_source: carcass

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_assembly_name: freshwater MAG --- Loclat_bin-06492

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: University of Oslo


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Kenya

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Jiaxing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- MJ_bin-0226

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SJUD6098

ncbi_submitter: Broad Institute


ncbi_submitter: University of Georgia


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_country: USA: Baltimore

ncbi_isolation_source: urine

ncbi_submitter: Ares-Genetics


ncbi_country: Australia: Boho South; VIC

ncbi_isolation_source: feces

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: EPFL


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Christian Medical College


ncbi_country: Australia

ncbi_isolation_source: Seeds

ncbi_organism_name: Paenibacillus sp. S02

ncbi_submitter: AgriBio


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacillus sp. RC252

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RC252


ncbi_organism_name: Kluyvera ascorbata

ncbi_submitter: Hopital Bicetre


ncbi_country: Antarctica: Base General Bernardo O Higgins Riquelme; Trinity Peninsula; Cape Legoupil

ncbi_isolation_source: ocular surface sample

ncbi_organism_name: Weeksellaceae bacterium TAE3-ERU29

ncbi_submitter: Erciyes University


ncbi_assembly_name: IMG-taxon 2675903060 annotated assembly

ncbi_organism_name: Nonomuraea wenchangensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_organism_name: Herbiconiux liangxiaofengii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Serratia proteamaculans

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Streptosporangium nondiastaticum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Shimia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: uncultured Anaerolineales bacterium