ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_country: Switzerland

ncbi_genome_representation: full

ncbi_isolation_source: abdominal effusion

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWF2_40_12


ncbi_assembly_level: Contig

ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Hospital Virgen del Rocio


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chung Shan Medical University


ncbi_isolation_source: Environmental

ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


gtdb_representative: t

ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: MD

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH131

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Hominimerdicola sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Caldisericum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rhodopila sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citricoccus sp. GCM10030269

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus testis

ncbi_submitter: EMG


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: hydrocarbon

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: India: Kopparapadu; Prakasham; Andhra Pradesh

ncbi_isolation_source: root

ncbi_organism_name: Paraburkholderia phenoliruptrix

ncbi_submitter: IUNFC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_organism_name: Polaromonas eurypsychrophila

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Chlorobium ferrooxidans DSM 13031

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;f__Chlorobiaceae;x__Chlorobium/Pelodictyon group;g__Chlorobium;s__Chlorobium ferrooxidans;x__Chlorobium ferrooxidans DSM 13031


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Nitrospinaceae bacterium


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Novosphingobium kalidii

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_organism_name: Xenorhabdus ehlersii


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Estonia

ncbi_isolation_source: abscess

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: HUM-8 repl1

ncbi_submitter: University of Tartu


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_isolation_source: fermented brine used for stinky tofu production

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus;s__Secundilactobacillus odoratitofui;x__Secundilactobacillus odoratitofui DSM 19909 = JCM 15043


ncbi_organism_name: Bacillus sp. FSL R5-0603

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R5-0603


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 211

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1328

ncbi_submitter: University of Calgary


ncbi_organism_name: Actinomyces sp. HPA0247

ncbi_submitter: Broad Institute


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P12 CL A35

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: USA

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ralstonia sp. 11b

ncbi_submitter: University of Silesia in Katowice


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_02_FULL_43_11b


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oligoflexia bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: South Korea: Taean

ncbi_isolation_source: coastal dune soil

ncbi_organism_name: Deinococcus taeanensis

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Morocco

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Cupriavidus sp. OTU4895

ncbi_submitter: The University of Chicago


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Northeastern University


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Chile

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_level: Chromosome

ncbi_isolation_source: faecal

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: Shandong Normal University


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces sp. NBC_00053

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Staphylococcus saccharolyticus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_submitter: BGI


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolate: AOP19_D1_surf _bin _17

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP19_D1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: ICU - unoccupied bed

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_organism_name: Enterocloster aldenensis


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: ITQB NOVA


ncbi_assembly_name: Isolate 17

ncbi_submitter: Kalmar county hospital


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Utah

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_assembly_name: Version 1 Erwinia tracheiphila PSU-1

ncbi_country: USA: PA; Rock Springs

ncbi_isolation_source: xylem sap from a wilt disease infected wild gourd at Larsen Agricultural Research Station

ncbi_organism_name: Erwinia tracheiphila PSU-1

ncbi_submitter: USDA-ARS-Pacific Basin Agricultural Research Center


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD7635

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_organism_name: Dokdonia sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Southampton


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: pig gut metagenome


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Colwellia sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: Germany: Bitterfeld; Bitterfeld-Wolfen

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas reinekei

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Schenga

ncbi_isolation_source: Arbuscular mycorrhizae fungus

ncbi_organism_name: Pseudomonas sp. PSB1

ncbi_submitter: Leibniz-Institut fur Gemuse- und Zierpflanzenbau


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Canada

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: DogUtad

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SurvCARE


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Acidocella sp. 20-58-15


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Madurai Kamaraj University


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_submitter: USDA


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: MI

ncbi_organism_name: Rhodococcus sp. 05-340-2

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-340-2


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: broncoscopy

ncbi_organism_name: Staphylococcus aureus M0643

ncbi_submitter: Broad Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_submitter: Ausgem


ncbi_organism_name: Streptomyces sp. NPDC059092

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalomonas;s__Candidatus Scybalomonas excrementigallinarum


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Basel


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Bacteroidales bacterium UBA1237

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1237


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 116 (4-6879942)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 116 (4-6879942)


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: IMG-taxon 2687453786 annotated assembly

ncbi_organism_name: Chryseobacterium culicis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: Mycobacterium ulcerans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Parcubacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolate: Latilactobacillus curvatus J116

ncbi_organism_name: Latilactobacillus curvatus

ncbi_strain_identifiers: Latilactobacillus curvatus J116

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Salmonella sp. SKLX107304

ncbi_submitter: Zhejiang university


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil

ncbi_organism_name: Bacillus thuringiensis

ncbi_strain_identifiers: Bti

ncbi_submitter: Federal Universaty of Tocantins


ncbi_country: Mozambique: Manhica

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: Ghana

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Danish Technical University


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus W20433

ncbi_submitter: Broad Institute


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0801

ncbi_submitter: Texas A&M University


ncbi_assembly_name: Rumen uncultured genome RUG10836

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: University of Wyoming


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: Assembled genome of Aminobacter niigataensis MD1

ncbi_organism_name: Aminobacter niigataensis

ncbi_submitter: Universite de Strasbourg


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm formed on glass slides submerged in a sewage for 72 hours

ncbi_organism_name: Leptospira soteropolitanensis

ncbi_submitter: Federal University of Bahia


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Rutgers University


ncbi_country: Atlantic Ocean: Sargasso Sea; BATS

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; marine water

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_assembly_name: freshwater MAG --- Umea_bin-06398

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0584


ncbi_organism_name: Paenibacillus sp. FSL R5-0701

ncbi_submitter: Penn State


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_isolation_source: pig

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Yangzhou University


ncbi_country: Australia: Darwin; NT

ncbi_isolation_source: Tumulitermes pastinator termitarium soil

ncbi_organism_name: Nocardiopsaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: vegetable

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii UH16208

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus inaquosorum

ncbi_strain_identifiers: F. Cohan N9A4

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland

ncbi_isolation_source: potato-based retail food product

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_organism_name: Paraburkholderia sp. HC6.4b


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sediminibacterium ginsengisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Blautia sp. KLE 1732

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;x__unclassified Blautia;s__Blautia sp. KLE 1732


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Chryseobacterium gleum


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus pretiosus

ncbi_strain_identifiers: TIAC 78

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Yonsei University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bioreactor performing anaerobic oxidation of methane coupled to iron reduction

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA:Minnesota; Rochester

ncbi_isolate: CIM:MAG 663_1

ncbi_organism_name: Coriobacteriia bacterium

ncbi_strain_identifiers: CIM:MAG 663_1

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


gtdb_type_species_of_genus: t

ncbi_country: Japan:Okinawa; Ishigaki Island

ncbi_isolation_source: compost

ncbi_organism_name: Insulibacter thermoxylanivorax

ncbi_submitter: Japan International Research Center for Agricultural Sciences


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: India: Nashik; Godavari River

ncbi_isolation_source: river water during mass gathering event

ncbi_organism_name: Chakrabartia godavariana

ncbi_submitter: National Centre for Microbial Resource, National Centre for Cell Science


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_isolation_source: termite gut

ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: CAU


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW215-R4

ncbi_submitter: Arkin Lab


ncbi_organism_name: Allomuricauda sp. d1

ncbi_submitter: Guangxi University


ncbi_country: China: Zhejiang

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12512

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Streptomyces sp. NPDC102259

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Delaware; Newark

ncbi_isolation_source: urine

ncbi_submitter: Delaware Public Health Lab


ncbi_country: China: Quzhou

ncbi_organism_name: Gemmatimonadota bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolate: metabat2_coassembly_bwa.612 MAG

ncbi_organism_name: Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.612 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Kalyani; West Bengal

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: National Institute of Biomedical Genomics


ncbi_country: India:Chamba; Himachal Pradesh

ncbi_isolation_source: Glacial stream

ncbi_organism_name: Brevibacillus sedimenti

ncbi_strain_identifiers: PCH 117

ncbi_submitter: CSIR-IHBT PALAMPUR


ncbi_country: Italy: Bologna

ncbi_isolation_source: gut

ncbi_organism_name: Apilactobacillus kunkeei

ncbi_submitter: NO PROBLEMS


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: pig gut metagenome


ncbi_country: Switzerland

ncbi_isolation_source: cheese (Emmental)

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 678

ncbi_submitter: Brigham Young University


ncbi_isolation_source: Stool

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Gillisia sp.

ncbi_submitter: Rutgers University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Nanjing; Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_assembly_name: Lokhon

ncbi_country: China

ncbi_isolation_source: marine biofilm

ncbi_organism_name: Limimaricola hongkongensis DSM 17492

ncbi_submitter: Leibniz Institute DSMZ Braunschweig


ncbi_country: France: Caen

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lautropia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Kenya

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: India: Vellore

ncbi_isolation_source: Fluid

ncbi_submitter: Christian Medical College


ncbi_submitter: University of Georgia


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Argentina: Salta

ncbi_isolation_source: hot water spring

ncbi_organism_name: Geobacillus sp. T6

ncbi_submitter: INTA


ncbi_organism_name: Cyclonatronaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: United Kingdom

ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Marinovum sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas sp. sp1636

ncbi_submitter: University of Copenhagen


ncbi_country: Norway

ncbi_isolation_source: Blood culture

ncbi_submitter: St. Olav University Hospital


ncbi_country: USA

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA6517

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA6517


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Tenacibaculum sp. HL-MS23

ncbi_submitter: Seoul National University


ncbi_organism_name: Candidatus Staskawiczbacteria bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Staskawicziibacteriota;x__unclassified Candidatus Staskawiczbacteria;s__Candidatus Staskawiczbacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Baking leaven

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Bioprox


ncbi_country: New Zealand: Waikato

ncbi_submitter: Massey University


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Enterobacter sp. CPE_E157

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Nitrospirota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__environmental samples;s__uncultured Nitrospirota bacterium


ncbi_organism_name: Brucella abortus

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Flavihumibacter stibioxidans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Brevundimonas sp. 357

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc253

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc253


ncbi_country: China: Hunan

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter sp. YH16056

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: NC

ncbi_isolation_source: other

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: University of central Florida


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_isolation_source: shrimp paste

ncbi_organism_name: Planococcus maritimus

ncbi_submitter: Jiangsu University


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Paenibacillus sp. MYb67

ncbi_submitter: Zoological Institute, Kiel University


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: cold seep

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Fermented fruit

ncbi_organism_name: Gluconobacter kanchanaburiensis

ncbi_submitter: Ghent University


ncbi_organism_name: Streptomyces sp. NPDC046751

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Normandy

ncbi_isolation_source: sink trap

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Streptomyces platensis


ncbi_country: Japan

ncbi_isolation_source: sputa

ncbi_organism_name: Mycolicibacter kumamotonensis

ncbi_submitter: Instituto Politecnico Nacional


ncbi_country: Bangladesh

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_submitter: Monash University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Pantoea dispersa


ncbi_country: USA

ncbi_isolation_source: CF Sputum

ncbi_organism_name: Bordetella genomosp. 10

ncbi_submitter: University of Michigan


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bartonella apis

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_organism_name: Clostridiales bacterium GWD2_32_19

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Korea

ncbi_isolation_source: sea water

ncbi_organism_name: Leisingera sp. SS27

ncbi_submitter: Dongguk university


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Faecousia sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_isolation_source: marine metagenome


ncbi_country: Germany

ncbi_isolation_source: ear swab of patient suffering from chronic otitis media

ncbi_organism_name: Bordetella trematum

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Cooling tower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: University of Minnesota


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12157

ncbi_submitter: South China Agricultural University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 145660

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: air

ncbi_organism_name: Pedobacter sp. Leaf250

ncbi_submitter: ETH ZURICH


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: China: Daye

ncbi_isolation_source: cropland soil

ncbi_organism_name: Allosphingosinicella humi

ncbi_submitter: Huazhong agricultural university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micromonospora arida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Mahidol University


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: University of Calgary


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: uncultured Aliarcobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: bovine material

ncbi_organism_name: Enterococcus devriesei

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: uncultured Anaeromassilibacillus sp.


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: [Eubacterium] saphenum


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Spribille Lab


ncbi_organism_name: Gluconobacter potus

ncbi_submitter: Teagasc


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_organism_name: uncultured Algimonas sp.


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Actinomycetota bacterium


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: JNTUH


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 20cm depth; 4 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium 13_1_20CM_2_69_21


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Palmer LTER


ncbi_organism_name: uncultured Woeseia sp.


ncbi_organism_name: Salmonella sp. 741265045_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Tokyo

ncbi_isolation_source: Garden soil

ncbi_organism_name: Rhodococcus sp. B50

ncbi_submitter: Academia Sinica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. B50


ncbi_country: Malaysia

ncbi_isolation_source: Pus

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 10231C

ncbi_submitter: University of Exeter


ncbi_country: Czech Republic: Nymburk

ncbi_isolation_source: pressure ulcer swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: Tissue isolate

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_submitter: Centre for Genomic Epidemiology, National Food Institute, Technical University of Denmark (DTU), Denmark


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: field experiment

ncbi_organism_name: Curtobacterium flaccumfaciens pv. betae

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: Salmonella bongori

ncbi_submitter: University of Queensland


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG11_big_fil_rev_8_21_14_0_20_39_22


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halanaerobiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: South Africa

ncbi_isolation_source: Rustenburg

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Pretoria


ncbi_organism_name: Bradyrhizobium sp. SZCCHNRI1009

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Halanaerobium saccharolyticum


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Halanaerobium congolense


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Marinobacter salarius

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_assembly_name: freshwater MAG --- Loc090116-4m_bin-1271

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- KT_bin-2367

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Herbaspirillum sp.

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Salibacteraceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Brucella abortus 67/781

ncbi_submitter: Broad Institute


ncbi_isolation_source: middle ear

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_isolation_source: fermented goat butter

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Bacillus cereus BAG1X2-1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus BAG1X2-1


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Pune

ncbi_isolation_source: Pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_submitter: National Medicines Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: malt vinegar brewery acetifiers

ncbi_organism_name: Novacetimonas maltaceti

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_country: Colombia

ncbi_isolation_source: Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces tubercidicus

ncbi_submitter: Bielefeld University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: France

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: INRAE


ncbi_country: China: Shandong Province; Xiaoshi Island; Weihai

ncbi_organism_name: Cryomorphaceae bacterium 1068

ncbi_submitter: Shandong University


ncbi_country: Canada

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-179

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_submitter: Karolinska Institutet


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Streptomyces griseus subsp. rhodochrous

ncbi_strain_identifiers: NRRL B-2931

ncbi_submitter: University of Illinois

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Kitasatosporales;f__Streptomycetaceae;g__Streptomyces;x__Streptomyces griseus group;x__Streptomyces griseus subgroup;s__Streptomyces griseus;sb__Streptomyces griseus subsp. rhodochrous


ncbi_submitter: Center for Microbial Communities


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: feces

ncbi_submitter: Chinese Academic of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Liu et al. 2021)


ncbi_country: Canada: Quebec

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: deep subsurface microcosm

ncbi_organism_name: uncultured Proteiniphilum sp.

ncbi_submitter: VTT Technical Research Centre of Finland Ltd


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: Yale Center for Genome Analysis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M1190

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Anaerorhabdus sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Catonella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterobacter hormaechei


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brisbane


ncbi_submitter: University of Plovdiv


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eisenbergiella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aquirufa salirivi

ncbi_submitter: University of Innsbruck


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_submitter: Hazara University


ncbi_organism_name: Bacillus sp. YIM B13441

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13441


ncbi_organism_name: Planococcus rifietoensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Marinobacter persicus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: ProteonPharmaceuticals


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Syntrophorhabdus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_organism_name: Klebsiella sp. R51

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Microsaccharimonas sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Microsaccharimonas;x__unclassified Candidatus Microsaccharimonas;s__Candidatus Microsaccharimonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bdellovibrionia bacterium


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Zambia: Lusaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of Maryland College Park


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Japan

ncbi_isolation_source: feces from a healthy human donor

ncbi_organism_name: Paraprevotella clara

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: uncultured Haliea sp.


ncbi_country: Denmark: North Jutland

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: Australia: Brisbane

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: La Trobe University


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Kocuria marina subsp. indica

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;s__Kocuria marina;sb__Kocuria marina subsp. indica


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Psychrobacter sp.


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Cellulomonas sp. Root930

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_organism_name: uncultured candidatus Porisulfidus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;x__Chromatiales incertae sedis;x__Candidatus Porisulfidus;x__environmental samples;s__uncultured candidatus Porisulfidus sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: University of Michigan


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_country: Pakistan: Islambad

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_organism_name: Peribacillus muralis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: intestinal content

ncbi_organism_name: Paramuribaculum sp.

ncbi_submitter: ChinaCDC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_organism_name: Pseudorhizobium pelagicum


ncbi_isolation_source: human gut

ncbi_organism_name: Enterococcus massiliensis


ncbi_country: Peru

ncbi_isolation_source: Seaweed

ncbi_organism_name: Marinomonas sp. S3726

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human skin

ncbi_organism_name: Comamonas terrigena

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Prevotella intermedia

ncbi_submitter: University of Leicester


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Paludibacter sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Brachyspira sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Germany: Helgoland

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Lacinutrix sp. Hel_I_90

ncbi_strain_identifiers: Hel_I _90

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_country: Germany: Helgoland Roads

ncbi_organism_name: Winogradskyella ursingii

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_country: USA

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Minnesota


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Adelaide Medical School


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Treponema sp. UBA3224

ncbi_submitter: University of Queensland


ncbi_country: Poland

ncbi_organism_name: Obesumbacterium proteus

ncbi_submitter: nankai university


ncbi_organism_name: Amycolatopsis echigonensis

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Anaerostipes hadrus


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;o__Tissierellales;f__Peptoniphilaceae;g__Peptoniphilus;x__unclassified Peptoniphilus;s__Peptoniphilus sp. oral taxon 386;x__Peptoniphilus sp. oral taxon 386 str. F0131


ncbi_country: Sri Lanka: Ragama

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Rhodococcus zopfii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Germany: Zingster Strom

ncbi_isolation_source: Cyanobium sp. CZS 48M enrichment culture from brackish water

ncbi_organism_name: Oceanibaculum nanhaiense

ncbi_submitter: Mount Allison University


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Desulfobacterales bacterium


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Micr


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteriovoracia bacterium

ncbi_submitter: North West University


ncbi_organism_name: Bacillus cereus

ncbi_submitter: US Food and Drug Administration


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-596

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Microbacteriaceae bacterium


ncbi_organism_name: Bordetella bronchiseptica

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Nocardia sp. NPDC087230


ncbi_organism_name: Microbacterium sp. MTN4-12

ncbi_submitter: The University of Tokyo, Atmosphere and Ocean Research Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Ginsengibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Ferrovibrio sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Parma


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China

ncbi_organism_name: Enterobacteriaceae bacterium BIT-l23

ncbi_submitter: Beijing Institute of Technology


ncbi_organism_name: Pseudoalteromonas tetraodonis

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: China:Xinjiang Province

ncbi_isolation_source: Soil

ncbi_organism_name: Actinoplanes xinjiangensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: FL

ncbi_organism_name: Listeria farberi

ncbi_submitter: Cornell University


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: sewage treatment plant

ncbi_organism_name: Desulfolutivibrio sulfoxidireducens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: SCOPE


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K6-148

ncbi_submitter: Institute of Marine research


ncbi_country: China: Suzhou

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA2961

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA2961


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NTH33

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Dialister invisus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: Canada: Lacombe

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_organism_name: Paraburkholderia aspalathi

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ruian Maternal and Child Health Hospital


ncbi_isolation_source: lake water

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Beijing

ncbi_submitter: National institutes of Food and Drug Control


ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group