ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of South Africa


ncbi_assembly_level: Contig

ncbi_organism_name: Hoylesella buccalis

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_level: Complete Genome

ncbi_country: China

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Portugal

ncbi_organism_name: Streptococcus pneumoniae WL677

ncbi_submitter: Allegheny Research Institute


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-105-05_S4_C2

ncbi_submitter: IGS


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


gtdb_representative: t

ncbi_organism_name: Flavobacterium sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Poland: unknown

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. k-90

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolate: Enterococcus faecium CV167

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Enterococcus faecium CV167

ncbi_submitter: Embrapa Gado de Leite


ncbi_organism_name: Oceanobacillus sp.


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSLER


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Hydroponic greenhouse

ncbi_organism_name: Agrobacterium leguminum

ncbi_submitter: KU Leuven


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacterium stomatepiae

ncbi_refseq_category: reference genome

ncbi_submitter: Department of Infection Metagenomics, Osaka University

ncbi_type_material_designation: assembly from type material


ncbi_country: Turkey

ncbi_isolation_source: Raw milk

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: Nanjing University


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_organism_name: Pseudarthrobacter sp. NKDBFgelt

ncbi_strain_identifiers: NKDBFgelt

ncbi_submitter: Institute of Ecology and Genetics of Microorganisms of the Ural Branch of the RAS


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella boydii 08-2671

ncbi_submitter: Institute for Genome Sciences


ncbi_country: South Korea

ncbi_isolation_source: Fresh water

ncbi_organism_name: Comamonas fluminis

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: SC


ncbi_organism_name: Liquorilactobacillus vini DSM 20605

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria atlantica

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Kordiimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bern


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolate: MARUCo-BGE

ncbi_organism_name: Vibrio diabolicus

ncbi_strain_identifiers: MARUCo-BGE

ncbi_submitter: Marian University College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: bioreactor

ncbi_organism_name: Firmicutes bacterium UBA5561

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5561


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pseudomonas sp. NPDC090964

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Broad Institute


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx


ncbi_organism_name: uncultured Microbacterium sp.


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Candidatus Harrisonbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;x__unclassified Candidatus Harrisonbacteria;s__Candidatus Harrisonbacteria bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Leucobacter sp. MMO-57

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Salmonella enterica CVM 43839 v1.0

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Vibrio campbellii

ncbi_submitter: ICAR-Central Institute of Brackishwater Aquaculture


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG12129

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-334

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-334


ncbi_country: Australia: Adelaide

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Italy

ncbi_isolation_source: Fermented sourdough

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Odense University Hospital


ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The REHAB Consortium


ncbi_submitter: University of Galway


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Hellea sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Romboutsia sp. 1001216sp1

ncbi_submitter: Icahn School of Medicine


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Namhae Island

ncbi_isolation_source: root

ncbi_organism_name: Pseudohoeflea suaedae

ncbi_submitter: Chung-Ang University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0626

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Shewanella psychropiezotolerans

ncbi_submitter: Third Institute of Oceanography, State of Oceanic Administration


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom:Midlands

ncbi_strain_identifiers: Bir 142


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_country: Canada: Sherbrooke

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Ames Iowa

ncbi_isolation_source: ileal content

ncbi_organism_name: Suipraeoptans intestinalis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: China: Jiangsu

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: freshwater MAG --- YR_bin-4633

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mycobacteroides abscessus 4S-0303

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium CG07_land_8_20_14_0_80_39_13


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: University of Goettingen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR31402

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: meat processing plant

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Kosakonia sacchari

ncbi_submitter: ICAR - Indian Agricultural Research Institute


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Hong Kong

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus R0487

ncbi_submitter: Broad Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Microbacterium sp. 13-71-7


ncbi_country: Canada: Come by Chance; Newfoundland

ncbi_isolation_source: coastal sediment from Newfoundland; north Atlantic Canada

ncbi_organism_name: Alcanivorax sp. N3-2A

ncbi_submitter: Memorial University of Newfoundland


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Ileo-caecum


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: drainage

ncbi_organism_name: Staphylococcus aureus M1191


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: ZC4 (Zoo Composter number 4) at the Sao Paulo Zoo

ncbi_organism_name: Thermocrispum agreste

ncbi_submitter: Instituto de Quimica


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Actinomadura sp. LOL_016

ncbi_submitter: Academia Mexicana de Ciencias


ncbi_organism_name: Candidatus Phytoplasma sp. TWB_XP

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__unclassified Candidatus Phytoplasma;s__Candidatus Phytoplasma sp. TWB_XP


ncbi_organism_name: Leptotrichiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Multivorans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;x__unclassified Candidatus Multivorans;s__Candidatus Multivorans sp.


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus cereus group sp. BceL056

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL056


ncbi_organism_name: uncultured Treponemataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Maine

ncbi_isolation_source: hospital patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Mexico: Sinaloa

ncbi_isolation_source: meat

ncbi_submitter: Instituto de Investigacion Lightbourn


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Methylorubrum extorquens

ncbi_strain_identifiers: TLI 802

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Xichang Colleage


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: University College Dublin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Zurich


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB13

ncbi_submitter: Soochow University


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Malaya


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Xiamen University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: Puerto Rico

ncbi_isolation_source: small intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Piglet feces

ncbi_organism_name: Ligilactobacillus agilis

ncbi_submitter: Dankook University


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus gobiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Exiguobacterium acetylicum

ncbi_submitter: the seqafrica consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium acetylicum


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_country: Netherlands

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_strain_identifiers: KCOM 3001

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Jeotgalibaca dankookensis


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium tetani

ncbi_submitter: Chinese National Institute for Food and Drug Control


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Yersinia proxima

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Blautia obeum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2010C-4979C1


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Archangium gephyra

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: China

ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_organism_name: Terrimesophilobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Microbacterium sp. 1262

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_country: Spain: off the coast of Alicante

ncbi_isolate: MedPE-SWde

ncbi_isolation_source: Mediterranean seawater enriched with a specific particulate matter

ncbi_organism_name: Roseobacter sp. MedPE-SWde

ncbi_strain_identifiers: MedPE-SWde

ncbi_submitter: University Miguel Hernandez


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Montreal


ncbi_country: Brazil: Tatui

ncbi_isolation_source: Cecum and rectal contents from Capybaras

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_organism_name: Dialister invisus

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG13624

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Leptotrichia hofstadii

ncbi_submitter: EMG


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China:Tangbiao village Lanxi town Zhejiang province

ncbi_isolation_source: Fermented vegetables

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Zhejiang Gongshang University


ncbi_country: USA: Nome; Alaska

ncbi_isolation_source: grassland

ncbi_organism_name: Pseudomonas sp. PAMC 26793

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Brazil

ncbi_isolation_source: chicken piece (Gallus gallus)

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Ethiopia

ncbi_isolation_source: Brown flour teff injera

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: BLOOD


ncbi_organism_name: Sinorhizobium fredii

ncbi_strain_identifiers: USDA 191

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands

ncbi_organism_name: Curtobacterium flaccumfaciens pv. oortii

ncbi_strain_identifiers: CFBP 1384

ncbi_submitter: University of Tehran

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhengzhou University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolate: AOP1_E1_surf _bin _30

ncbi_organism_name: Pauljensenia sp.

ncbi_strain_identifiers: AOP1_E1_surf _bin _30

ncbi_submitter: Genoscope


ncbi_submitter: University Hospital Muenster


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: EMG


ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Spiribacter pallidus

ncbi_submitter: University of Sevilla, Spain


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: feces

ncbi_organism_name: Romboutsia ilealis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: TN

ncbi_isolation_source: ground turkey

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_isolation_source: Faeces


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Seoul National University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_isolation_source: isolated from patient

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_country: Mali

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Clostridium fessum

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1017

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Chile

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Infantis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_assembly_name: Rumen uncultured genome RUG139

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: France: Marseille

ncbi_isolation_source: skin

ncbi_organism_name: Paenibacillus sp. Marseille-Q4541

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: uncultured Iamiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured OM182 clade bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__OMG group;x__OM182 clade;x__environmental samples;s__uncultured OM182 clade bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Cleveland Clinic


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Ares Genetics


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Chitinophaga niabensis

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Environmental / Soil

ncbi_organism_name: Burkholderia vietnamiensis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: composting material of distilled shochu residue

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Agrilactobacillus;s__Agrilactobacillus composti;x__Agrilactobacillus composti DSM 18527 = JCM 14202


ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: Norway

ncbi_organism_name: Thiomicrorhabdus arctica DSM 13458

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Leyella stercorea

ncbi_submitter: Stanford University School of Medicine


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: pasteurized egg white

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Otago


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 3384PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Phytoplasma citri

ncbi_submitter: Universidade Federal de Vicosa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma citri


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Streptomyces sp. NPDC000927

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human skin

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: NIH/NHGRI


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_assembly_name: Salmonella enterica CVM N31844-SQ v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Odoribacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Hangzhou

ncbi_isolation_source: Umbilical cord secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_country: China: Yunnan province

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_isolation_source: stool

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: river

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Japan

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: leg ulcer

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Blood from patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: YangZhou university


ncbi_isolate: metabat2_pooled_hifiasm.1096 MAG

ncbi_organism_name: Candidatus Odoribacter faecigallinarum

ncbi_strain_identifiers: metabat2_pooled_hifiasm.1096 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Paenarthrobacter sp. NPDC089714

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Phage Research Center, Liaocheng University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universidad de Chile


ncbi_organism_name: Ramlibacter sp.


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. cmx-14-8

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Mariner hydrothermal plume 25m

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_organism_name: Glutamicibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Indian Ocean

ncbi_isolation_source: Northwest Arabian Sea Upwelling Province

ncbi_organism_name: Herbaspirillum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Spain: Palma de Mallorca

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: acroh

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_country: China

ncbi_isolation_source: heart

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC001835

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Yuxi; Yunnan Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Neobacillus sp. YX16

ncbi_submitter: Technical University of Denmark


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0067

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-0377

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Salmonella enterica CVM N30705-R v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: cold seep

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_assembly_name: Willow Endophyte RIT313

ncbi_country: USA: New York; Geneva

ncbi_isolation_source: Willow (Salix sp.)

ncbi_organism_name: Delftia sp. RIT313

ncbi_submitter: Monash University Malaysia


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Japan:Lake Yamanaka-ko

ncbi_isolation_source: water

ncbi_organism_name: Undibacterium sp. YM2

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1639 from squamous cell carcinomas patient MST029

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Kunming Medical University


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Colwellia polaris

ncbi_submitter: EMG


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Catenibacterium mitsuokai


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pontibacterium sp.

ncbi_submitter: Xiamen University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 308

ncbi_submitter: SC


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__unclassified Candidatus Marinamargulisbacteria;s__Candidatus Marinamargulisbacteria bacterium


ncbi_country: Germany: Aachen

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: food additive EnteroDophilus

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: Australia: Hobart

ncbi_isolation_source: Cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Russia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Rhizobium sp. SYY.PMSO

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Marinobacter subterrani

ncbi_submitter: University of Michigan


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lysinibacillus sphaericus


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera hominis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_organism_name: Saccharopolyspora spinosa NRRL 18395

ncbi_submitter: Microbial Genome Research Center, CASPMI, IM-CAS


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Sichuan

ncbi_isolation_source: tissue

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom:Hertfordshire

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Russia: Samara

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Western Australia; Roebuck Bay

ncbi_submitter: Federation University Australia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hvittingfoss


ncbi_organism_name: Clostridium botulinum

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus intestinalis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Khyber Medical University, peshawar, KPK, Pakistan


ncbi_country: South Korea:Seoul

ncbi_isolation_source: freshwater

ncbi_organism_name: Aquirufa nivalisilvae

ncbi_submitter: Hankuk University of Foreign Studies


ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: BGI Research


ncbi_organism_name: Actinomadura nitritigenes

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Hafnia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Serratia sp. CY66712

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY66712


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Tissierellia bacterium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Blautia producta

ncbi_submitter: Nanjing University


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Butyricimonas virosa


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Acinetobacter baylyi

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: PUPa3 1.0

ncbi_country: India

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology


ncbi_country: Germany

ncbi_isolation_source: Chemical industry waste water

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Medical practice

ncbi_organism_name: Metasolibacillus meyeri

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: China: Jiangsu

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Psychrobacter sp. JCM 18901

ncbi_submitter: The University of Tokyo


ncbi_country: Russia: Moscow

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: flour/flour products

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Italy

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Universita degli Studi di Firenze


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: The University of Melbourne


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical university of Denmark


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: conjunctivae of infant with NECII

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_name: Draft genome of Pseudoclavibacter helvolus G8

ncbi_isolate: Pseudoclavibacter helvolus

ncbi_isolation_source: Meat Chopper / Grinder in a Danish Slaughterhouse

ncbi_organism_name: Pseudoclavibacter helvolus

ncbi_strain_identifiers: G8;Pseudoclavibacter helvolus

ncbi_submitter: Universitetsparken 15


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Paracoccaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical University


ncbi_isolation_source: drinking water

ncbi_organism_name: Methylobacterium variabile

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: USA: Ohio

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Cold Lake; Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1542

ncbi_submitter: Broad Institute


ncbi_isolation_source: Burn

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S19

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: University of Calgary


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: EMG


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Streptomyces sp. IBSBF 2507

ncbi_strain_identifiers: IBSBF 2507

ncbi_submitter: UFSCar


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Bodily fluid


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: San Francisco Bay

ncbi_isolation_source: Perchlorate-reducing enrichment

ncbi_organism_name: Denitromonas ohlonensis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Stagnimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: water

ncbi_organism_name: Asticcacaulis sp. AND118

ncbi_submitter: Xinjiang Normal University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Geneva University Hospitals


ncbi_country: Russia

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: PRCCID


ncbi_country: USA: Boston

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Geraldton

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: The University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Flavisolibacter ginsenosidimutans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Mycobacterium tuberculosis OFXR-10

ncbi_submitter: Broad Institute


ncbi_country: USA: Northridge;CA

ncbi_isolation_source: pond water

ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: California State University Northridge


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Paracoccus fontiphilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Desulfovermiculus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Sinus

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_country: USA: Cambridge; Massachusetts

ncbi_isolation_source: human oral cavity

ncbi_organism_name: TM7 phylum sp. oral taxon 349

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__TM7 phylum sp. oral taxon 349


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Aquipseudomonas alcaligenes

ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: uncultured Sulfuritalea sp.


ncbi_organism_name: uncultured Chloracidobacterium sp.


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Xiamen University


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Sphingopyxis solisilvae

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lentilactobacillus hilgardii

ncbi_submitter: Teagasc


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Streptomyces sp. NPDC059534


ncbi_assembly_name: IMG-taxon 2595698218 annotated assembly

ncbi_organism_name: Streptococcus gallolyticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Exercitatus varius

ncbi_submitter: University of Copenhagen


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: South Korea

ncbi_isolation_source: cheonggukjang

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Microbial Institue for Fermentation Industry


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Tidjanibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Firmicutes bacterium CAG:124

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:124


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: brain tissue

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: University of Florida


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV182

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_organism_name: Streptomyces luteoverticillatus

ncbi_strain_identifiers: CGMCC 15060

ncbi_submitter: Ludong University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Bacteroides caccae


ncbi_assembly_name: CLC Genomics Workbench 10

ncbi_country: USA: CA

ncbi_isolation_source: Blowhole

ncbi_organism_name: Staphylococcus delphini

ncbi_submitter: University of California at Davis


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter seifertii


ncbi_country: Czech Republic

ncbi_isolation_source: soil

ncbi_organism_name: Dyella sp. S184

ncbi_submitter: Institute of Microbiology of the AS CR


ncbi_country: France

ncbi_isolation_source: Blood culture

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: China: Shenzhen

ncbi_organism_name: Firmicutes bacterium AM10-47

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM10-47


ncbi_country: Ghana: Accra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: WSLC 1047

ncbi_submitter: ETH Zurich


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: United Kingdom: Carmarthen

ncbi_organism_name: Corallococcus coralloides

ncbi_submitter: Aberystwyth University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_strain_identifiers: ILEW 148 MK

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Chester


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Enterobacter sp. BIDMC100

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. BIDMC100


ncbi_country: Australia: Queensland; Roma

ncbi_isolation_source: water sample collected from a newly drilled coal seam bore well (65 hours after drilling)

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Griffith University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG11539

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: China: Kunming

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom: Scotland

ncbi_organism_name: Campylobacter porcelli

ncbi_submitter: University of Aberdeen


ncbi_organism_name: Arthrobacter bambusae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: University of Exeter


ncbi_country: Ghana:Ga district

ncbi_isolation_source: human tissue biopsy

ncbi_organism_name: Mycobacterium ulcerans Agy99

ncbi_submitter: Institut Pasteur


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: SC


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Litorivicinaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: Surveillance

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Odoribacter sp.

ncbi_submitter: San Diego State University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China

ncbi_isolation_source: stem

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangxi University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Buchnera aphidicola (Aphis aurantii)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Biogas reactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: ear

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Japan

ncbi_organism_name: Streptobacillus ratti

ncbi_submitter: Robert Koch Institute


ncbi_country: South Korea:Jeju

ncbi_isolation_source: natural cave

ncbi_organism_name: Collimonas antrihumi

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_submitter: Institute of Marine research


ncbi_isolation_source: Human Stool

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: Urine

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Canada: Fort McMurray; Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Desulfomicrobium sp. UBA5193

ncbi_submitter: University of Queensland


ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Austin; TX

ncbi_organism_name: Bombilactobacillus bombi

ncbi_submitter: University of Texas at Austin


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_0956


ncbi_organism_name: Clostridioides sp. ZZV14-6150

ncbi_submitter: Northern Arizona University


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Shandong University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU patient oral swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Birmingham


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: PMM port 1 of International Space Station

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Spain: Palencia

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Corynebacterium matruchotii


ncbi_country: India: Vellore

ncbi_isolation_source: Pus swab

ncbi_submitter: Christian Medical College


ncbi_assembly_name: Salmonella enterica CVM N46840 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Steroidobacterales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Kocuria sp. KSNUG

ncbi_strain_identifiers: KSNUG

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pavia


ncbi_organism_name: Syntrophothermus sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Venatoribacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal University of Paraiba


ncbi_organism_name: Streptomyces sp. NPDC001930

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus cereus group sp. MYBK181-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK181-1


ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus sp. LR_6

ncbi_submitter: Banaras Hindu University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. LR_6


ncbi_country: Canada: Powell Lake South basin; British Columbia

ncbi_isolation_source: lake water

ncbi_organism_name: bacterium

ncbi_submitter: Dalhousie University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA7641

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA7641


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Haerbin

ncbi_isolation_source: Plant rhizosphere

ncbi_organism_name: Nonomuraea glycinis

ncbi_submitter: Northeast Agriculutural University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_assembly_name: freshwater MAG --- Umea_bin-04238

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Australia: Sydney

ncbi_submitter: The University of Sydney


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Kiel University


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC