ncbi_country: China: Sichuan

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: West China Hospital, Sichuan University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: gut

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Bacillus thuringiensis

ncbi_strain_identifiers: barcode 17

ncbi_submitter: Gateway Technical College


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0326

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_assembly_level: Complete Genome

ncbi_country: Brazil

ncbi_isolation_source: Milker s hand

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


gtdb_type_species_of_genus: t

ncbi_organism_name: Mesoterricola silvestris

ncbi_refseq_category: reference genome

ncbi_submitter: Bioproduction Research Institute

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: cold seep

ncbi_organism_name: Maribacter sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Dokdonia sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Taiyuan

ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter sp. TYUT067

ncbi_submitter: Taiyuan University of Technology


ncbi_assembly_name: IMG-taxon 2671180041 annotated assembly

ncbi_organism_name: Streptosporangium subroseum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Chile: Santiago

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: environmental

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Oregon State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chouaib Doukkali University


ncbi_organism_name: Capnocytophaga gingivalis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. NPDC088748

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC007264


ncbi_organism_name: uncultured Myxococcales bacterium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Universite de Limoges


ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Delhi

ncbi_isolation_source: Yamuna River

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Palacky University Olomouc


ncbi_country: Australia: Hobart

ncbi_isolation_source: Cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Laos

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Wenzhouxiangella sp.


ncbi_country: USA: GA

ncbi_isolation_source: field

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: food

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Photorhabdus laumondii subsp. laumondii

ncbi_submitter: University of Bern


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_assembly_name: IMG-taxon 2599185320 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC36

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Ohio

ncbi_isolation_source: alimentary canal

ncbi_organism_name: Ohessyouella blattaphilus

ncbi_submitter: The Ohio State University


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: TIFN


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhengzhou University


ncbi_country: Singapore

ncbi_isolation_source: wet market

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: Germany

ncbi_isolation_source: Lake Stechlin

ncbi_organism_name: Sphingomonas sp. STIS6.2

ncbi_submitter: Leibniz-Institute of Freshwater Ecology and Inland Fisheries


ncbi_organism_name: Kitasatospora albolonga

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Novosphingobium sp.


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia sp. MOD1-EC6842

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bacteroides pyogenes


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: Intestine of adult

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_isolation_source: soil

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: Boston; MA; USA

ncbi_organism_name: Staphylococcus aureus M1107

ncbi_submitter: Broad Institute


ncbi_country: Australia: Feather Reef

ncbi_organism_name: Endozoicomonas sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Sugary water

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: NTU - Nanyang Technological University


ncbi_assembly_name: Bifgalrum

ncbi_isolation_source: Chicken caecum

ncbi_organism_name: Bifidobacterium pullorum subsp. gallinarum


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: Isolate 10

ncbi_submitter: University of Siena


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)


ncbi_country: China: Jiaxing; Zhejiang

ncbi_isolation_source: food

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis


ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: SurvCARE


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria cinerea

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: isolated from salt-fermented seafood

ncbi_organism_name: Brachybacterium squillarum M-6-3

ncbi_submitter: Kyung Hee University


ncbi_assembly_name: IMG-taxon 2654588148 annotated assembly

ncbi_organism_name: Williamwhitmania taraxaci

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: INSTITUTE FOR MEDICAL RESEARCH, MALAYSIA


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


ncbi_country: Spain: Balearic Islands; Palma de Mallorca

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_organism_name: Avibacterium avium

ncbi_strain_identifiers: SCPM-O-B-15625 (Borovsk 8c)

ncbi_submitter: SRCAMB


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Acinetobacter sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_country: USA: WA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonas australica

ncbi_submitter: University of Queensland


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacterium succinicans

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured Thiotrichaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Psychrobacter sanguinis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Prevotellamassilia timonensis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: Alphaproteobacteria bacterium Ga0077535

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Alphaproteobacteria bacterium Ga0077535

ncbi_submitter: University of Glasgow


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_country: Russia

ncbi_organism_name: Aquimarina intermedia

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: PA

ncbi_isolation_source: dairy Cows

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59484F

ncbi_submitter: FDA


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter pascens


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Roseovarius sp.


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Phocaeicola vulgatus CL09T03C04

ncbi_submitter: Broad Institute


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Hunan

ncbi_isolation_source: drainage

ncbi_organism_name: Citrobacter sp. 172116965

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 168

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom

ncbi_organism_name: Coprococcus comes


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany

ncbi_organism_name: Streptococcus agalactiae


ncbi_assembly_name: freshwater MAG --- YR2_bin-0650

ncbi_organism_name: uncultured Chlorobiales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;c__Chlorobiia;o__Chlorobiales;x__environmental samples;s__uncultured Chlorobiales bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: IMG-taxon 2615840623 annotated assembly

ncbi_organism_name: Gordonia sp. v-85

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. v-85


ncbi_organism_name: Merdibacter sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Qingdao

ncbi_organism_name: Proteus faecis

ncbi_submitter: Shandong University


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_country: Japan

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_country: China: Yunnan; Danqian village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_country: India: Punjab

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Guru Nanak Dev University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 204

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 1386

ncbi_submitter: University of Calgary


ncbi_country: Saudi Arabia: Riyadh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Dublin


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-410-N23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Nonomuraea sp. NPDC049419

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_organism_name: Nocardioides massiliensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: DC

ncbi_isolation_source: Blood

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_assembly_name: freshwater MAG --- Umea2_bin-3006

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces anthocyanicus


ncbi_country: Germany: Bremen

ncbi_isolation_source: Root Endopshere

ncbi_organism_name: Opitutaceae bacterium EW11

ncbi_submitter: University of Bremen


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EMG


ncbi_country: USA: San Francisco

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_country: Russia: Troitsa Bay; Sea of Japan

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Microbulbifer thermotolerans

ncbi_submitter: G.B. Elyakov Pacific Institute of Bioorganic Chemistry


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Caedibacter sp.

ncbi_submitter: Ocean University of China


ncbi_submitter: university of pennyslvania

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Xenorhabdus entomophaga

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Clostridium botulinum C/D str. BKT12695

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum C/D str. BKT12695


ncbi_country: Netherlands

ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus aureus S130

ncbi_submitter: Geneva University Hospitals, Genomic Research Laboratory.


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. 4_1_36

ncbi_submitter: BGI


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. F-M27

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Zhengzhou

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Chloroflexaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: South Korea: Gyeongsangnam-do; Tongyeong-si; Hansan-myeon; Bijindo

ncbi_isolation_source: forest soil

ncbi_organism_name: Lysobacter sp. KIS68-7

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Luteimonas sp. MC1825

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Shewanella sp.

ncbi_submitter: The Ohio State University


ncbi_organism_name: Mesorhizobium sp. M0114

ncbi_submitter: Washington State University


ncbi_country: Italy

ncbi_organism_name: Rhizobium sp. AG855

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: Zhejiang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Jonesia denitrificans DSM 20603

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: Universidad Nacional Andres Bello


ncbi_assembly_name: Rumen uncultured genome RUG14288

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Emmental cheese

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_strain_identifiers: DSM 663

ncbi_submitter: University of Natural Resources and Life Sciences Vienna (Universitaet fuer Bodenkultur Wien)


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pseudolactococcus laudensis

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: Denmark

ncbi_isolation_source: in vitro phage -resistant clone

ncbi_organism_name: Vibrio anguillarum


ncbi_country: Malaysia

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori UM114

ncbi_submitter: UM-UNSW-MGRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Tepidisphaerales bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UIUC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Leifsonia sp. NPDC056665

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Micromonospora sp. LOL_024

ncbi_submitter: Academia Mexicana de Ciencias


ncbi_organism_name: Scytonema tolypothrichoides VB-61278_2

ncbi_submitter: Indian Institute Of Chemical biology


ncbi_organism_name: uncultured Myxococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia albertii

ncbi_submitter: Kurume University School of Medicine


ncbi_organism_name: Veillonella sp. ZSJB6

ncbi_submitter: Jinan Microecological Biomedicine Shandong Laboratory


ncbi_organism_name: Streptomyces sp. NPDC016309


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Rhodopila sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: Rumen uncultured genome RUG493

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Rhodothermales bacterium


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Emory University School of Medicine


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Culiacan River; Puente Negro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: USA: New York

ncbi_isolation_source: cooling tower water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Paenibacillus sp.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S27

ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_country: Japan

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium breve MCC 1114

ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ICE 502

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: Leptolyngbyales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Helicobacter bilis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Saccharopolyspora sp. SCSIO 74807

ncbi_strain_identifiers: SCSIO 74807

ncbi_submitter: South China Sea Institute of Oceanology Chinese Academy of Sciences


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_country: Serbia

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 487

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Prevotella sp.


ncbi_assembly_name: Rumen uncultured genome RUG706

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: NY

ncbi_isolation_source: Fluid

ncbi_organism_name: Staphylococcus aureus DAR1890

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: pork salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Neisseria sp.


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterocloster bolteae ATCC BAA-613

ncbi_strain_identifiers: ATCC BAA-613

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Nostocoides sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Guangdong provincial center for disease control and prevention


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: SC


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Iraq

ncbi_isolation_source: carcass

ncbi_submitter: university of Kufa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPHIGHO2_01_FULL_39_12c


ncbi_country: Italy

ncbi_isolation_source: baked ham

ncbi_submitter: IZSAM


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_country: Singapore

ncbi_isolation_source: supermarket

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brancaster


ncbi_assembly_name: Rumen uncultured genome RUG11377

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: EMG


ncbi_isolation_source: Aborted fetus of sheep

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Lanzhou Veterinary Research Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Formosa sp.


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_submitter: Stony Brook University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Institut Pasteur


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC059489

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Thermoleophilia bacterium


ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Variovorax sp. ZT4R33

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolate: AOP19_H1_surf _bin _9

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP19_H1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Technical University of Munich


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus cereus group sp. BceL120

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL120


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: stool

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_submitter: University of Wyoming


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_country: China: Changsha

ncbi_isolation_source: liver abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing genomics institute


ncbi_country: South Korea

ncbi_isolation_source: pig slaughterhouse hall floor

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Mycobacterium sp. GA-1285

ncbi_submitter: JCVI


ncbi_country: Austria: National Park of Illmitz

ncbi_isolation_source: weed growing in a vineyard

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: AIT Austrian Institute of Technology GmbH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Canada: Guelph

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_country: USA: Asheville; NC

ncbi_organism_name: Corallococcus exiguus

ncbi_submitter: University of Mississippi


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;s__Candidatus Jacksonbacteria bacterium RIFOXYD2_FULL_43_21


ncbi_organism_name: uncultured Legionellales bacterium


ncbi_strain_identifiers: PEER 433

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Prevotella disiens


ncbi_submitter: Zhejiang university


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National institute for research in tuberculosis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: municipal wastewater

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T86574

ncbi_submitter: Broad Institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_organism_name: Bacilli bacterium


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_isolation_source: Urine

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_country: United Kingdom

ncbi_isolation_source: Child cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: University of Pretoria


ncbi_country: Mexico

ncbi_isolation_source: Larvae

ncbi_organism_name: Erwinia sp. S43

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: mid-vaginal wall

ncbi_organism_name: Veillonellaceae bacterium M2-4

ncbi_submitter: Virginia Commonwealth University


ncbi_country: India: Karnataka

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Agromyces laixinhei

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Cincinatti

ncbi_isolation_source: abscess

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_strain_identifiers: CECT 7210

ncbi_submitter: Ordesa


ncbi_country: France: Aquitaine

ncbi_isolation_source: Pork

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Derby

ncbi_submitter: ANSES


ncbi_organism_name: Dentiradicibacter hellwigii

ncbi_submitter: University of Freiburg


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Escherichia coli

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Australian National University


ncbi_organism_name: Pantoea allii

ncbi_submitter: University of Georgia


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Rhodococcus sp. 114MFTsu3.1

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 114MFTsu3.1


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: MS

ncbi_isolation_source: Clinical specimen

ncbi_organism_name: Staphylococcus aureus DAR3567

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: freshwater MAG --- Loc090907-8-6m_bin-400

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: India: Nagpur

ncbi_isolation_source: Sewage sample

ncbi_organism_name: Enterococcus sp. HPCN18

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: vaginal

ncbi_organism_name: Enterococcus sp. HMSC060E05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Pennsylvania


ncbi_country: USA: NY

ncbi_isolation_source: Intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: EMG


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Arachnia propionica


ncbi_isolation_source: Nasal Swab

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: ANSES


ncbi_organism_name: Bartonella senegalensis OS02

ncbi_submitter: ebi


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: China: Taizhou

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_organism_name: uncultured Colidextribacter sp.

ncbi_submitter: HANYANG UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Colidextribacter;x__environmental samples;s__uncultured Colidextribacter sp.


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of Minnesota

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: uncultured Massilia sp.


ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: University of Life Sciences in Lublin


ncbi_organism_name: Flavobacterium sp. 3HN19-14

ncbi_submitter: Mokwon university


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: uncultured Geoanaerobacter sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Stockholm University


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Dyella kyungheensis

ncbi_submitter: Iowa State University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Wayne State University


ncbi_country: Ireland

ncbi_isolation_source: table and wall Gap

ncbi_submitter: Teagasc Food Research Centre


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: University of Debrecen


ncbi_country: USA: HI

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China: Beitun;Xinjiang

ncbi_isolation_source: Freshwater products of animal origin from retail market

ncbi_submitter: Shihezi University


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Segetimicrobium genomatis

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Chlamydia muridarum str. Weiss

ncbi_strain_identifiers: Weiss

ncbi_submitter: UMIGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Weiss


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Rarobacter incanus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Peru

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus DAR5842

ncbi_submitter: Broad Institute


ncbi_country: India: Gujarat

ncbi_isolation_source: marine sediment

ncbi_organism_name: Paraclostridium benzoelyticum

ncbi_submitter: UoH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Anaplasma phagocytophilum

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Germany: Wilhelmshaven

ncbi_organism_name: Winogradskyella luteola

ncbi_submitter: HZI-Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA40183

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Succinatimonas sp. UBA7771

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_isolation_source: Pooled soil sample collected from floor of cattle farm

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The REHAB Consortium


ncbi_country: Denmark: Hygum

ncbi_isolation_source: surface soil

ncbi_organism_name: Pseudomonas marginalis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Halomonas sp. 54_146

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_country: Germany: Muenster

ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_country: France: Munster; Alsace

ncbi_organism_name: Borreliella burgdorferi IPT23

ncbi_submitter: Animal Epidemiology Unit - INRA - Saint Genès Champanelle; CNR Borrelia - Pasteur Institute - Paris


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Acacia decurrens

ncbi_organism_name: Paraburkholderia phenoliruptrix

ncbi_submitter: GHENT UNIVERSITY


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan: Miyagi; Sendai; Miyagino-ku; Gamou

ncbi_isolation_source: Tsunami-affected soil

ncbi_organism_name: Arthrobacter sp. Hiyo8

ncbi_submitter: Department of Computational Biology, Graduate School of Frontier Sciences, The University of Tokyo


ncbi_country: China: Guangdong

ncbi_isolation_source: sediment from a river near an e-waste dump; TBBPA-dehalogenation enrichment

ncbi_organism_name: Dehalobacter sp.

ncbi_submitter: Najing Agricultural University


ncbi_organism_name: Brevundimonas sp. 2P2-tot-C

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: USA: Durham; NH; Adams Point

ncbi_isolation_source: root nodule

ncbi_organism_name: Herbaspirillum sp. 3C11

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_name: IMG-taxon 2593339219 annotated assembly

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Rhodopirellula europaea

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: blood culture

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_assembly_name: Rumen uncultured genome RUG14701

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Peptoniphilus lacrimalis

ncbi_submitter: University of California, Davis


ncbi_organism_name: Microcoleus sp. B4-C3

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: West Virginia

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus epidermidis VCU111

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Johnsonella sp.


ncbi_organism_name: Conexibacter stalactiti

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: Paracoccus haematequi

ncbi_submitter: Biology Centre CAS


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Zurich


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Macquarie University


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Buttiauxella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Nocardia sp. A7

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Limnochordia bacterium


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: Borreliella kurtenbachii

ncbi_submitter: Laval university


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_isolation_source: cattle feces

ncbi_submitter: Curtin University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_organism_name: bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_country: China: Delingha

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B122;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Streptomyces sp. CA2R106

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: uncultured Limosilactobacillus sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Taizhou

ncbi_isolation_source: sewage

ncbi_organism_name: Escherichia sp. R4

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Changsha

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xiangya hospital, Central South University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Yoonia sp.

ncbi_submitter: Palmer LTER


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG14533

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: AAFC


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: NEB


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA4990

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: intestinal contents

ncbi_submitter: Iowa State University College of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: Feces

ncbi_submitter: university of tokyo


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Veillonellaceae bacterium AF80-05A

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: lettuce

ncbi_organism_name: Escherichia coli O145:H28 str. RM12581

ncbi_submitter: USDA-ARS-WRRC-PSM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O145:H28;x__Escherichia coli O145:H28 str. RM12581


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Bartonella grahamii as4aup

ncbi_submitter: Dept. of Molecular Evolution, Uppsala University


ncbi_isolate: Mycobacterium chimaera

ncbi_isolation_source: environmental

ncbi_strain_identifiers: Mycobacterium chimaera;Mycobacterium chimaera MC045

ncbi_submitter: UNIVERSITY OF MELBOURNE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium intracellulare;sb__Mycobacterium intracellulare subsp. chimaera


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1053

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: Universita degli Studi di bari


ncbi_country: USA: Tucson

ncbi_isolation_source: Aphids on a Populus fremontii tree

ncbi_organism_name: Buchnera aphidicola (Pemphigus obesinymphae)

ncbi_submitter: University of Texas


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Thalassolituus haligoni

ncbi_submitter: Dalhousie University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Russia: Baikal Lake region; Siberia

ncbi_isolation_source: root nodule

ncbi_organism_name: Bosea sp. Tri-44

ncbi_submitter: ARRIAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. Tri-44


ncbi_organism_name: Sandarakinorhabdus limnophila DSM 17366


ncbi_country: United Kingdom

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: not provided

ncbi_organism_name: Actinomyces sp. oral taxon 448

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 448


ncbi_country: Germany: Grieheim

ncbi_isolation_source: Insects

ncbi_organism_name: Streptomyces sp. AM 3-1-1

ncbi_submitter: Albert Ludwigs Universitaet Freiburg


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: India: Karnataka

ncbi_isolation_source: Human community

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Roseburia intestinalis


ncbi_country: USA: WA

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces sp. ME02-8801-2C

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Greene0714_4


ncbi_isolation_source: mussel bed


ncbi_country: Japan

ncbi_organism_name: Ferrimonas futtsuensis DSM 18154

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus fastidiosus

ncbi_submitter: University of Alberta


ncbi_isolation_source: well water

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shandong University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Fermentimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Denmark: Jaegersborg Dyrehave

ncbi_isolation_source: grassland soil

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: USA: California; Eel River; South Fork Eel River near Leggett

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: San Diego State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Grand Staircase Escalante National Monument; Utah

ncbi_isolation_source: wet wall hanging garden on a sandstone rock wall in the Carmel-Page formation; partly covered with organic debris; mosses and vascular plants

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfonatronospira sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Italy: Marche; Ancona; Jesi

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZSAM


ncbi_country: Finland

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Unversidad Michoacana de San Nicolas de Hidalgo


ncbi_country: Slovenia: Piran; Adriatic Sea; Gulf of Piran

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Argentina: Anguil; La Pampa

ncbi_isolation_source: Rectal swab of live bovine cattle

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Instituto Nacional de Tecnologia Agropecuaria


ncbi_organism_name: Streptomyces sp. NPDC058290

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Kitasatospora phosalacinea


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Parma


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin4

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MOJ bin4

ncbi_submitter: Monash University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany: Mannheim

ncbi_isolation_source: rectal swab

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Canada: Etobioke

ncbi_isolation_source: arm cellulitis

ncbi_organism_name: Allofranklinella schreckenbergeri

ncbi_submitter: National Microbiology Laboratory/ Public Health Agency of Canada


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Enterobacter sp. HNDS-6

ncbi_submitter: Zhejiang University


ncbi_country: South Korea: Jinju

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_isolation_source: forest soil

ncbi_organism_name: Hyalangium versicolor

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: USA: Tennessee

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Devosia indica

ncbi_submitter: Zhejiang Wanli University


ncbi_country: Belgium

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Clostridium botulinum F str. Langeland

ncbi_strain_identifiers: Langeland

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum F;x__Clostridium botulinum F str. Langeland


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: CHU Bicetre


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Megamonas funiformis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Pseudomonas fulva


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: University of Alberta


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 108 - depth 500m

ncbi_organism_name: Marinobacter sp. REDSEA-S27_B10

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Caldilinea aerophila

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas sp. G.S.17

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: South Korea:Buyeo

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: USDA-ARS


ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento