ncbi_country: USA: Wisconsin

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of the West of England

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: China: Beijing

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Peking University


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_country: Hong Kong

ncbi_isolation_source: genital

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: The University of Hong Kong


ncbi_country: Spain

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA11856

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_country: Russia: Trans-Baikal Territory; Borzya; Borzya river

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Plague Control Research Institute of Siberia and Far East


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_country: Denmark

ncbi_isolation_source: throat swab

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MRSA


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Complete Genome

ncbi_country: Japan

ncbi_isolation_source: Vagina

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Griffith University


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Capsulimonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Coprovivens excrementavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Coprovivens;s__Candidatus Coprovivens excrementavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Coprovivens;s__Candidatus Coprovivens excrementavium


ncbi_country: China: Shanghai

ncbi_isolation_source: Gut

ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Shanghai Tenth People's Hospital, Tongji University School of Medicine


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Arenibacter sp. M-2

ncbi_submitter: Dongguk University


ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: Pakistan: Bin Qasim Town

ncbi_isolation_source: feces

ncbi_submitter: University of Maryland School of Medicine


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Hubei

ncbi_isolation_source: aquatic products

ncbi_organism_name: Shewanella oncorhynchi

ncbi_refseq_category: reference genome

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Yangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: food

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Microbial Institiue for Fermentation Industry


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: OAHPP


ncbi_isolation_source: Peach tree leaf

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Kyungpook National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Escherichia coli EC1856

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: WRAIR-Africa


ncbi_country: Paraguay: Paraguari

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Victivallis vadensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: SC


ncbi_country: Burkina Faso

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_organism_name: Streptomyces sp. MI02-2A

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Vienna


ncbi_organism_name: uncultured Terracidiphilus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: atcc25922 mut 14

ncbi_submitter: Paris Saclay


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Proteobacteria bacterium UBA3416

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA3416


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Salmonella sp. NW500

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolate: gp13 AA79

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp13 AA79

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Vagococcus fluvialis


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Chesapeake Bay in Baltimore; Maryland

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Synechococcus sp. CBW1004

ncbi_submitter: University of Maryland Center For Environmental Science


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Washington; Pullman

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: porcine tonsil microbiota

ncbi_organism_name: Rothia nasimurium

ncbi_submitter: Wageningen University and Research


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quadram Institute


ncbi_country: Portugal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lichen metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: France: APHM

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU AIX MARSEILLE UNIVERSITY


ncbi_assembly_level: Chromosome

ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Aeromonas sp. R10-1

ncbi_submitter: Hangzhou CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Duncaniella freteri


ncbi_country: USA: International Space Station

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: NC

ncbi_organism_name: Bordetella avium

ncbi_strain_identifiers: JBBA

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Zhejiang university


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Hong Kong

ncbi_isolation_source: urine

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Gottfriedia acidiceleris

ncbi_submitter: Auburn University


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge meat facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: clinical

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 77-0424


ncbi_submitter: The Lu'an People's Hospital


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Flavonifractor sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_assembly_name: Rumen uncultured genome RUG14539

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R950;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Streptomyces sp. SudanB91_2054

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Fuzhou

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: national health research institutes


ncbi_assembly_name: Rumen uncultured genome RUG10656

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: tobacco leaves

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: Yunnan Academy of Tobacco Agriculture Science


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Texas

ncbi_isolation_source: transedoscopic tracheal wash

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- AM3_bin-0111

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- YR_bin-1127

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: Ileo-caecum


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Center for Microbial Communities


ncbi_isolate: CON5 bin19

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_strain_identifiers: CON5 bin19

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Manitoba


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Tenacibaculum dicentrarchi

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Escherichia coli CVM N33640PS v. 1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N33640PS

ncbi_submitter: FDA


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW456-E6

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: Colombia

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Acetoanaerobium noterae


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Colistin

ncbi_submitter: The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: leaves

ncbi_organism_name: Paenibacillus sp. PL91

ncbi_submitter: University of Groningen


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Rhabdothermincola sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: White Sea

ncbi_isolation_source: sludge from White Sea estuary

ncbi_organism_name: Thiocapsa bogorovii

ncbi_strain_identifiers: BBS

ncbi_submitter: IBPM RAS

ncbi_type_material_designation: assembly from type material


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Leicester


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: California; Middletown

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland

ncbi_isolation_source: urine

ncbi_submitter: University of Bern


gtdb_type_species_of_genus: t

ncbi_organism_name: Permianibacter aggregans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Serbia: Belgrade

ncbi_isolation_source: cervix swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_assembly_name: IMG-taxon 2642422586 annotated assembly

ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_submitter: Prince of Songkla University


ncbi_assembly_name: Rumen uncultured genome RUG12886

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Hafnia paralvei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Denmark

ncbi_isolation_source: culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Chr. Hansen A/S


ncbi_isolation_source: liver equine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_country: USA: Georgia

ncbi_isolation_source: xylem

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Auburn University


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Ureaplasma sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_country: USA

ncbi_isolation_source: fecal composite of dairy cows

ncbi_submitter: USDA


ncbi_country: Australia: Melbourne

ncbi_isolation_source: laboratory-created transinfected host line (F7)

ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Korea

ncbi_isolation_source: Soil of gold mine cave; Korea; Kongju

ncbi_organism_name: Catelliglobosispora koreensis DSM 44566

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Synechocystis sp. PCC 6803 substr. GT-I

ncbi_submitter: University of Tokyo , Department of Agriculture,

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Merismopediaceae;g__Synechocystis;x__unclassified Synechocystis;s__Synechocystis sp. PCC 6803;x__Synechocystis sp. PCC 6803 substr. GT-I


ncbi_country: South Africa

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pretoria


ncbi_isolation_source: Human

ncbi_organism_name: Achromobacter piechaudii

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: Forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: The Jackson Laboratory


ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: INTA Bariloche - CONICET


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: SRCAMB


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Kitasatospora sp. NBC_01250

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: lake water

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Tunisia

ncbi_isolation_source: abdomen

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Pooled pig faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: Northeastern University


ncbi_country: Spain

ncbi_isolation_source: activated sludge from a seawater processing wastewater treatment plant in Villaricos (Almeria)

ncbi_organism_name: Novilysobacter luteus

ncbi_submitter: University of Valencia, Spain


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFOXYD2_FULL_41_14


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_organism_name: Glycomyces sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UCIBIO/REQUIMTE-UPorto


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Octocoral

ncbi_submitter: iBB-IST


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: USA: WA

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Washington


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Ocean University of China


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Treponema sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces


ncbi_isolation_source: Dual-strain biofilm on Detroit 562 cells

ncbi_submitter: Emory University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Qingdao Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Tritonibacter scottomollicae

ncbi_submitter: iBET


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Beijing Hanmi pharmaceutical Co., Ltd


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Tokai University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Firmicutes bacterium UBA1739

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA1739


ncbi_organism_name: Streptomyces kanasensis


ncbi_organism_name: Halobacteriovorax sp. XZX-3

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_submitter: The University of Queensland


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Germany

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Asaia bogorensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_submitter: Monash University


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil: Belem

ncbi_submitter: LNCC


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Pseudomonas berkeleyensis

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universiteit Antwerpen


ncbi_country: South Korea: Seoul

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Korea National Insititute of Health


ncbi_organism_name: Candidatus Competibacter sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__unclassified Candidatus Competibacter;s__Candidatus Competibacter sp.


ncbi_country: China: Zhangjiakou

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: EMG


ncbi_country: China: Shenzhen; Longgang

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_organism_name: Xanthomonas axonopodis pv. melhusii

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Gordonia polyisoprenivorans

ncbi_submitter: Tongji University School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Francisella sp.


ncbi_organism_name: Pseudoflavonifractor intestinihominis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Puerto Rico: saltern

ncbi_isolation_source: Filtrate 34% NaCl Saltern Water

ncbi_organism_name: Pontibacillus yanchengensis

ncbi_submitter: UC Davis


ncbi_country: South Africa: Capetown

ncbi_isolation_source: planktonic fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Mycobacteroides salmoniphilum

ncbi_submitter: University of Maine


ncbi_country: Ireland: Cork

ncbi_isolation_source: Raw bovine milk

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Cork Institute of Technology


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13766

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: United Kingdom: Sussex

ncbi_organism_name: Pseudomonas amygdali pv. morsprunorum

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. morsprunorum


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptomyces sp. NPDC019826

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: gut of Reticulitermes speratus

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: doenjang-meju

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_assembly_name: Salmonella enterica CVM N38870-SQ v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Zagget the koala

ncbi_organism_name: Oscillospiraceae bacterium Zagget6

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Myxococcota bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__environmental samples;s__uncultured Myxococcota bacterium


ncbi_country: France

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni DSM 20252 = AWRIB129

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Oenococcus;s__Oenococcus oeni;x__Oenococcus oeni DSM 20252 = AWRIB129


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Thailand: Krabi

ncbi_isolation_source: Hot spring soil

ncbi_organism_name: Planosporangium thailandense

ncbi_strain_identifiers: TBRC 5610

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_name: freshwater MAG --- Loc090907-1m_bin-358

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriales bacterium UBA2619


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Ili; Xinjiang

ncbi_isolation_source: Fermented camel milk

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Bulgaria:Struma River; Blagoevgrad

ncbi_isolation_source: sediment

ncbi_organism_name: Paenibacillus profundus

ncbi_strain_identifiers: YoMME

ncbi_submitter: Faculty of Biology at Sofia University "St. Kliment Ohridski"


ncbi_assembly_name: Vibrio sp. strain St2

ncbi_organism_name: Vibrio sp. St2

ncbi_submitter: iBB-IST


ncbi_country: Japan: Ichinoseki; Fukushima Pref.

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lilacinus

ncbi_strain_identifiers: NRRL B-1968

ncbi_submitter: University of Illinois


ncbi_strain_identifiers: Fiocruz LV4211

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV4211


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Switzerland: Aargau

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: Australia: Northern Territort

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phormidesmidales cyanobacterium

ncbi_submitter: East China Normal University


ncbi_country: USA

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Iowa State University


ncbi_organism_name: Anaeromyxobacter sp.

ncbi_submitter: EPFL


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Liquorilactobacillus ghanensis

ncbi_submitter: Teagasc


ncbi_country: USA: Milwaukee

ncbi_isolation_source: Sink

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: Germany

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0016

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Serratia grimesii NBRC 13537

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Thiohalophilus sp.

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_submitter: Juntendo Univ.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus N315


ncbi_country: Slovenia

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C283_09

ncbi_submitter: IGS


ncbi_country: Canada: Alberta

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120677


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: salt lake

ncbi_organism_name: Myceligenerans salitolerans

ncbi_submitter: Tarim University


ncbi_organism_name: Thermophilibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan

ncbi_isolation_source: Bos taurus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Australia: Brisbane

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bifidobacterium longum


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Bangladesh: Rajshahi

ncbi_isolation_source: Floor swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh (icddr,b)


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EMG


ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Serratia nevei

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Tsuneonella suprasediminis

ncbi_submitter: Monash University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: Teagasc


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Desulfohalobiaceae bacterium


ncbi_organism_name: Novosphingobium sp.


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S23

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Facklamia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_isolation_source: Tomato tissue

ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: centro de investigacion en alimentacion y desarrollo


ncbi_country: Turkey: Antalya

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: University of Toronto Mississauga


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Gladstone Institutes


ncbi_country: Portugal: Sao Pedro do Sul

ncbi_isolation_source: hot spring

ncbi_organism_name: Tepidimonas charontis

ncbi_submitter: Biocant


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Thailand

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Mexico: Tamaulipas; Reynosa

ncbi_isolation_source: soil

ncbi_organism_name: Bdellovibrio reynosensis

ncbi_submitter: Tufts University


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Princeton University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Winkia neuii BV029A5

ncbi_submitter: Broad Institute


ncbi_country: India: Kolkata

ncbi_isolation_source: Soil

ncbi_organism_name: Paenarthrobacter sp. PAE-2

ncbi_submitter: Bose Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of medicine


ncbi_country: China:Hebei; Baoding

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Xiamen University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Nevada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas luteoviolacea

ncbi_submitter: MaCuMBA Project


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China

ncbi_isolation_source: goose egg

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Potsdam


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_organism_name: Paraburkholderia sp. EG286A

ncbi_submitter: The James Hutton Institute


ncbi_country: Australia: Boorowa; New South Wales

ncbi_organism_name: Bradyrhizobium barranii

ncbi_submitter: Murdoch University


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Shimia sp.

ncbi_submitter: Kiel University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Merdimonas sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: France

ncbi_isolation_source: Bovine

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Gordonia sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: Pakistan

ncbi_isolation_source: root nodules of chickpea

ncbi_organism_name: Brucella ciceri

ncbi_submitter: CSIR-National Chemical Laboratory, Pune


ncbi_country: Spain

ncbi_isolation_source: Liver of a diseased rainbow trout; O. mykiss

ncbi_organism_name: Chryseobacterium tructae

ncbi_strain_identifiers: CECT 7798

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteroidales bacterium UBA6207

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6207


ncbi_organism_name: Escherichia coli H605

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: sebaceous gland in acne affected area on cheek of male with severe acne

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Amycolatopsis lurida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Hungary: Magyargencs

ncbi_isolation_source: nose

ncbi_submitter: Semmelweis University


ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Chryseobacterium indoltheticum


ncbi_country: Brazil: Campinas; SP

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: State University of Campinas


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: China: Haerbin

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: USA: Durham; NC

ncbi_isolation_source: Duke University Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4254

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4254


ncbi_country: USA

ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11333

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Zhejiang

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Municipal Hospital Affiliated to Taizhou University


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_isolate: NFPTS

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-683-A03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: freshwater MAG --- Day6-4_bin-060

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Japan

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: uncultured Massilia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Univerza v Ljubljani, Biotehniska fakulteta


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Neuroinfections Emerging in the Americas Study


ncbi_strain_identifiers: OSS 652

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Vienna


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces sp. NPDC059916

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: blood of infected SCID mice

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Baylor College of Medicine


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Lacombe

ncbi_organism_name: Segatella copri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: SICHUAN AGRICULTURAL UNIVERSITY


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Chile

ncbi_isolation_source: Arid soil collected from a coastal desert north of Antofagasta in Chile

ncbi_organism_name: Deinococcus peraridilitoris DSM 19664

ncbi_submitter: JGI


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Moscow


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus durans

ncbi_submitter: SC


ncbi_isolation_source: Mouse faeces


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Chongqing Medical University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Dubosiella newyorkensis


ncbi_country: Sweden

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: JMI Laboratories


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter sp. IK35

ncbi_submitter: University of Manitoba


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Nocardia asteroides NBRC 15531

ncbi_submitter: National Institute of Technology and Evaluation (NITE)


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: China

ncbi_isolation_source: pus

ncbi_submitter: Shandong University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA6423

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_organism_name: Asticcacaulis sp. BE141

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Serratia marcescens

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Pisa

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Siena


ncbi_country: Ireland

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University College Cork


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Plantibacter sp. ME-Dv--P-095

ncbi_submitter: University of Chicago


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UCI 65

ncbi_strain_identifiers: UCI 65

ncbi_submitter: Broad Institute


ncbi_country: New Zealand

ncbi_isolation_source: geothermal hotspring

ncbi_organism_name: Limisphaera ngatamarikiensis

ncbi_submitter: University of Canterbury


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Rhizobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: University of Waterloo


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_organism_name: Glaciecola petra

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: addis ababa university


ncbi_strain_identifiers: BfR L246

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Greenland

ncbi_isolation_source: sand

ncbi_organism_name: Bacillus altitudinis

ncbi_strain_identifiers: NRRL BD-176

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: sheep

ncbi_submitter: Zoonosis Science Center


ncbi_assembly_name: Rumen uncultured genome RUG13485

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: MALAYSIA GENOME INSTITUTE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Australia: Melbourne

ncbi_isolation_source: clinical

ncbi_strain_identifiers: ECO 114

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Israel

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Yale School of Public Health


ncbi_organism_name: Collinsella sp.


ncbi_isolation_source: Bean leaf

ncbi_organism_name: Xanthomonas cannabis

ncbi_strain_identifiers: CFBP 8591


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: University of Naples Federico II


ncbi_country: United Kingdom

ncbi_isolation_source: Cider fermentation

ncbi_organism_name: Acetobacter fallax

ncbi_submitter: Ghent University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH3099

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Cloacimonetes bacterium SCGC AAA252-O17

ncbi_strain_identifiers: SCGC AAA252-O17

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium SCGC AAA252-O17


ncbi_isolate: BCtu

ncbi_organism_name: Buchnera aphidicola (Cinara tujafilina)

ncbi_strain_identifiers: BCtu

ncbi_submitter: Instituto Cavanilles Biodiversidad y Biologia evolutiva.Universidad Valencia


ncbi_country: Thailand: Nakhon Phanom

ncbi_isolation_source: Rectal Swab

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0394R

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Sediment in freshwater pond; Athens; GA

ncbi_organism_name: Desulfitobacterium dehalogenans ATCC 51507

ncbi_submitter: JGI


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidocella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: India

ncbi_organism_name: Roseospira goensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Pseudolactococcus chungangensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Salmonella sp. s55574

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Pontificia Universidad Catolica de Chile


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Salmonella sp. SAL04188


ncbi_country: USA: California; Calistoga

ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Corynebacterium sp. KPL2805

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 44895_4

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: Hospital Univeristario de Bellvitge (Barcelona)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Chile: Lirima thermal springs

ncbi_isolation_source: water

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Faeces


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_submitter: University of Manitoba


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_organism_name: Pseudomonas sp. FW306-2-11AA

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Low Respiratory Tract Infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: freshwater MAG --- YR_bin-1006

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecalis ATCC 29212

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: China: Jilin

ncbi_organism_name: Snodgrassella sp. M0351

ncbi_submitter: China Agricultural University


ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Guangdong Province; Dinghushan Biosphere Reserve

ncbi_isolation_source: forest soil

ncbi_organism_name: Dyella amyloliquefaciens

ncbi_submitter: SUN YAT-SEN UNIVERSITY


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Cyanobium sp. MAG_185

ncbi_submitter: Linnaeus University


ncbi_organism_name: Sphingomonadales bacterium


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 10m

ncbi_organism_name: Sphingopyxis sp. REDSEA-S40_B6

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Bacteroidia bacterium


ncbi_country: Mexico

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium esperanzae

ncbi_strain_identifiers: CNPSo 668

ncbi_submitter: Embrapa


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Staphylococcus sp. CH99b_3

ncbi_submitter: Cinvestav


ncbi_organism_name: bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Daejeonella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: lung

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: INRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_isolation_source: Soil

ncbi_organism_name: Pandoraea terrigena

ncbi_submitter: LM-UGent


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus VET1368S

ncbi_submitter: Broad Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Fudan University


ncbi_country: USA: North Carolina; Charlotte

ncbi_isolation_source: soil

ncbi_organism_name: Acidovorax carolinensis

ncbi_submitter: University of North Carolina - Chapel Hill


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: China-Japan friendship hospital


ncbi_organism_name: Aquirufa regiilacus

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_country: Australia: Melbourne

ncbi_isolation_source: aerobically stored beef

ncbi_organism_name: Pseudomonas fragi

ncbi_submitter: CSIRO Agriculture and Food


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Bicetre hospital


ncbi_country: United Kingdom

ncbi_strain_identifiers: BGSC 4M3

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar darmstadiensis


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_country: Germany: Thuringia

ncbi_isolation_source: poultry feces

ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Australia

ncbi_submitter: US FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 4b;x__Listeria monocytogenes serotype 4bV str. LS642


ncbi_country: USA: WA

ncbi_organism_name: Alloscardovia omnicolens

ncbi_submitter: University of Washington


ncbi_assembly_name: IMG-taxon 2630968302 annotated assembly

ncbi_organism_name: Jiangella alba

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Geneva University Hospitals