ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: South Africa: Capetown

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_assembly_level: Contig

ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Sphingomonas melonis

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: Gluconobacter potus

ncbi_submitter: Teagasc


ncbi_country: India: Nagpur

ncbi_isolation_source: root nodules and soil

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: crude oil

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: bacterium 0.1xD8-71


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_submitter: Huashan Hospital of Fudan University


ncbi_isolation_source: flushing fluid

ncbi_submitter: Jinan University


ncbi_organism_name: Proteus terrae

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_assembly_name: freshwater MAG --- VK_bin-1852

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium sp. KPL2680

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Prochlorococcus marinus CUG1433

ncbi_submitter: China University of Geosciences


ncbi_country: Sri Lanka: Kurunegala

ncbi_isolation_source: Exorhizosphere rice

ncbi_organism_name: Pseudomonas sp. RW10S2

ncbi_submitter: KU Leuven


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii AB_2008-15-70

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Avelusimicrobium faecicola

ncbi_submitter: AAFC


ncbi_organism_name: Coprothermobacterota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Vibrio cholerae MS6

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_country: China: Jiangxi

ncbi_isolation_source: soil

ncbi_organism_name: Chitinophaga filiformis

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Tang lab


ncbi_country: China

ncbi_isolation_source: glacier soil

ncbi_organism_name: Rufibacter glacialis

ncbi_refseq_category: reference genome

ncbi_submitter: Henan University of Technology

ncbi_type_material_designation: assembly from type material


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium belfantii

ncbi_submitter: Northumbria University


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Canada: British Columbia

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Christensenella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Dialister sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Kaspar Lab, University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Germany: Cologne

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: HUN-REN Biological Research Centre, Szeged


ncbi_organism_name: Vibrio coralliirubri

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_assembly_level: Chromosome

ncbi_isolate: Cupriavidus taiwanensis mpp 1.1

ncbi_organism_name: Cupriavidus taiwanensis

ncbi_strain_identifiers: Cupriavidus taiwanensis mpp 1.1

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Jilin

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang University


ncbi_isolation_source: grassland soil

ncbi_organism_name: Lysobacter prati

ncbi_strain_identifiers: SYSU H10001

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Negativibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota sensu stricto incertae sedis;g__Negativibacillus;x__unclassified Negativibacillus;s__Negativibacillus sp.


ncbi_organism_name: Escherichia coli BIDMC 9

ncbi_strain_identifiers: BIDMC 9

ncbi_submitter: Broad Institute


ncbi_assembly_name: BFM

ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR5492

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Caecum

ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: sea water

ncbi_organism_name: Maribacter polysiphoniae

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul;x__Salmonella enterica subsp. enterica serovar Saintpaul str. JO2008


ncbi_country: Brazil

ncbi_isolation_source: egg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Colorado State University


ncbi_country: Hong Kong: Ngo Mei Chau

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: Germany

ncbi_isolation_source: brewery environment

ncbi_organism_name: Fructilactobacillus lindneri

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Citricoccus sp.

ncbi_submitter: NIH/NHGRI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__environmental samples;s__uncultured Candidatus Izemoplasmatales bacterium


ncbi_organism_name: Flavobacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2599185304 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC47-1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Salmonella sp. NW1141

ncbi_submitter: Sichuan University


ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Bened biomedical co. ltd


ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_organism_name: uncultured Stakelama sp.


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Novosphingobium resinovorum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Sutterella wadsworthensis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Indonesia: Sulawesi Island; Lake Matano

ncbi_isolation_source: enrichment of ferruginous lake sediment

ncbi_organism_name: bacterium


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_isolation_source: beef cheek

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12392

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Candidatus Bipolaricaulaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;x__unclassified Candidatus Bipolaricaulaceae;s__Candidatus Bipolaricaulaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: bglFP 6767

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Prochlorococcus sp. MIT 1011

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Kasetsart University Chalermphrakiat Sakon Nakhon Province Campus


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_submitter: FDA


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: vinegar

ncbi_organism_name: Acetobacter oryzoeni

ncbi_submitter: Chung-Ang university


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Caldimicrobium thiodismutans

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Thermoflexus hugenholtzii JAD2


ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Anhui

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin3

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin3

ncbi_submitter: Monash University


ncbi_country: France

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Niallia circulans

ncbi_submitter: Nanjing University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium GW2011_GWA1_46_30


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Parmigiano Reggiano cheese

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: University of Parma


ncbi_organism_name: Bradyrhizobium sp. JR1.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Canada: Ontario

ncbi_submitter: Public Health Ontario laborato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M79684

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Davis


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: mouse gut

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Enterocloster sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Beijing

ncbi_isolation_source: probiotic product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: south china agriculture university


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0413

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Anhui province

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Tobacco Research Institute of Chinese Academy of Agricultural Sciences


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2622736501 annotated assembly

ncbi_organism_name: Epibacterium ulvae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Ecuador

ncbi_isolation_source: street pet

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yachay Tech University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: University of Turin


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_country: Hungary: Korosszentapati; Kamut; Mez Gyan

ncbi_isolation_source: Submaxillary lymph node

ncbi_organism_name: Prescottella equi

ncbi_submitter: The University of Edinburgh


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Candidatus Phytoplasma vignae

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrIX (Pigeon pea witches'-broom group);s__Candidatus Phytoplasma vignae


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Kitchen A

ncbi_organism_name: Tatumella sp. JGM118

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Lichenihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_country: Kenya: Kericho

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: USAMRD


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agriculture University


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: University of Queensland


ncbi_country: China: Zhejiang

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: Antarctica: Hatherton; Transantarctic Mountains

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. H20

ncbi_submitter: University of Auckland


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_assembly_name: IMG-taxon 2654588171 annotated assembly

ncbi_organism_name: Alteribacillus persepolensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Artisanal dry-fermented salami

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: University of Bologna


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB07-275

ncbi_submitter: Broad Institute


ncbi_isolation_source: isolated from patient

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_isolation_source: meat processing facility

ncbi_organism_name: Pseudomonas sp. MF6396

ncbi_submitter: Nofima


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Yuan


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Campden BRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ealing


ncbi_organism_name: Burkholderia lata

ncbi_submitter: German Aerospace Center (DLR)


ncbi_organism_name: Agrobacterium salinitolerans

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC059152

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Capnocytophaga canis

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Tepidisphaeraceae bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: CHINA UNIVERSITY OF MINING AND TECHNOLOGY-BEIJING


ncbi_organism_name: uncultured Coxiellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Bergen


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Gaiellaceae bacterium


ncbi_submitter: South China Agricultural University


ncbi_organism_name: Serratia sp. CY36935

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY36935


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Belarus: Minsk region; Cherven

ncbi_isolation_source: Soil contaminated by oil sludge

ncbi_organism_name: Rhodococcus opacus

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Monash University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Nocardioidaceae bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: waste landfill

ncbi_organism_name: Sinomonas sp. ASV486

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: beef

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Cyprus: Zafer Cape

ncbi_isolation_source: soil

ncbi_organism_name: Nonomuraea sp. K271

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Croatia: Varazdin

ncbi_isolation_source: Brassica oleracea var. capitata cultivar Varazdinski

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: IGA Technology Services Srl


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Sanger Institute


ncbi_organism_name: Plesiomonas shigelloides


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_genome_representation: partial

ncbi_organism_name: Metalysinibacillus saudimassiliensis

ncbi_submitter: URMITE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge microbiome high temperature; high CO2

ncbi_organism_name: Candidatus Multivorans thiocomprendens

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;s__Candidatus Multivorans thiocomprendens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;s__Candidatus Multivorans thiocomprendens


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Portland State University


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: China: Jinan; Shandong province

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Shandong First Medical University,


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Italy: Milan

ncbi_isolation_source: Prosthetic implant

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: IRCCS Ospedale Galeazzi - Sant'Ambrogio


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: International Foundation Against Infectious Diseases in Nigeria (IFAIN)


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Flaviflexus massiliensis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG14714

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Pseudomonas soli

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Singapore

ncbi_isolation_source: Farm water farm 3

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Brunei


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli H397

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseibium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Barnesiella intestinihominis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Rahnella aquatilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Crude oil

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: SG 27

ncbi_submitter: UNICAMP


ncbi_country: USA: Davis city on Yolo county

ncbi_isolation_source: Biological material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: caecum

ncbi_organism_name: Collinsella ihumii

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_organism_name: Oscillibacter ruminantium

ncbi_submitter: University of Iowa


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus sanguinis SK1087

ncbi_submitter: Baylor College of Medicine


ncbi_country: Italy

ncbi_organism_name: Brachybacterium sp. AG952


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Acetobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Poriferisodalis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Poriferisodalaceae;g__Candidatus Poriferisodalis;x__unclassified Candidatus Poriferisodalis;s__Candidatus Poriferisodalis sp.


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_isolation_source: vegetable

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Wayne State University


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University of Washington


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: Rumen uncultured genome RUG12112

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: dairy product

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_country: Canada: British Columbia;Surrey

ncbi_isolation_source: water - canal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Arctic Ocean

ncbi_isolation_source: beach

ncbi_organism_name: Pseudoalteromonas sp. C1

ncbi_submitter: Shandong University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Daejeonella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chouaib Doukkali University


ncbi_organism_name: Segatella copri

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hafnia alvei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFOXYB1_FULL_41_59


ncbi_country: Israel

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Emek Medical center


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-19

ncbi_submitter: Curtin University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Spirochaetota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Clemson University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: candidate division TA06 bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division TA06;s__candidate division TA06 bacterium


ncbi_organism_name: Chlorobaculum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Monash University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7082

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: marine

ncbi_organism_name: Halieaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_assembly_name: IMG-taxon 2617270835 annotated assembly

ncbi_organism_name: Salimicrobium album

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Huibei

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: USA: IA

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Research Center of Avian Diseases, RCAD


ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Thailand: Chachoengsao

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium GWD2_42_10


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: SU

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Escherichia coli 97.0264

ncbi_submitter: E. coli Reference Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: strain MGAS2221

ncbi_submitter: Ankara Bilkent Sehir Hospital


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus MISS6110

ncbi_submitter: Broad Institute


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences


ncbi_country: Hungary

ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: USA: Colorado

ncbi_organism_name: Sulfurovum sp. UBA12169

ncbi_submitter: University of Queensland


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Chicago


ncbi_organism_name: Streptococcus agalactiae MRI Z1-202

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Saudi Arabia:Jeddah

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Microbacterium sp.


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium sp. BIOML-A3

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces chrestomyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: Boston University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: TX

ncbi_isolation_source: pork

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Marinomonas arenicola


ncbi_country: China: Jiangsu

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Flavimaricola sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Isoptericola jiangsuensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC001795


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Neisseria sicca ATCC 29256

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Granulicella sp.

ncbi_submitter: EPFL


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: seawater

ncbi_organism_name: Psychrobacter sp. UBA3480

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides intestinalis


ncbi_country: USA: New York City

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6505

ncbi_submitter: Ministry of Science and Technology of China


ncbi_country: USA: Connecticut

ncbi_organism_name: Vibrio sp. B183

ncbi_submitter: UMBC


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04741

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Barypeithes pellucidus


ncbi_isolation_source: vagina

ncbi_organism_name: Prevotella denticola DNF00960

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Lacombe

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: AAFC


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Frankiaceae bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: uncultured bacterium


ncbi_isolate: SPRUCE 621

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 621

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Microbacterium sp. NPDC057659

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces goshikiensis


ncbi_organism_name: Bifidobacterium catenulatum


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: freshwater MAG --- Umea3_bin-1083

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: INRAe


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Canada: Quebec

ncbi_organism_name: Escherichia coli O112ab:H8

ncbi_submitter: Government of Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_country: Antarctica

ncbi_isolation_source: beach sediment

ncbi_organism_name: Colwellia sp. 20A7

ncbi_submitter: Shandong University


ncbi_country: Mexico: Tica hydrothermal vent

ncbi_isolation_source: Adult female worm tissue

ncbi_organism_name: Candidatus Endoriftia persephonae

ncbi_submitter: University of Vienna


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Mycolicibacterium sp. 050232

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pseudanabaena sp. UWO311

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: Rumen uncultured genome RUG10065

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Eubacterium pyruvativorans

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Texas

ncbi_organism_name: Bacillus aerius

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bucharest


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: EMG


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis EnGen0118

ncbi_submitter: Broad Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: Beef carcass post-hide removal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: freshwater MAG --- Umea_bin-06635

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Rhodanobacter sp. FW106-PBR-R2A-3-15

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: USA: OR

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Hyalangium rubrum

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Comenius University Science Park


ncbi_submitter: University of Ha'il


ncbi_submitter: Molecular Genetics Laboratory, Department of Biological Sciences, School of Science, Tokyo Metropolitan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: USA: Alaska

ncbi_organism_name: Carnobacterium pleistocenium FTR1


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroides salyersiae


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: Italy: PA Bolzano

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Canada

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kosmotogaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitari Germans Trias i Pujol (Badalona)

ncbi_submitter: CNAG-CRG


ncbi_country: Ukraine

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: NY

ncbi_isolation_source: intestine (Canis lupus)


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pakistan: Karak

ncbi_isolation_source: Animal feed (hay)

ncbi_organism_name: Bacillus sp. SD-4

ncbi_submitter: National University of sciences and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SD-4


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 262

ncbi_submitter: SC


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Germany: Rostock; Unterwarnow

ncbi_isolation_source: wood

ncbi_organism_name: Lignipirellula cremea

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: Australia: Melbourne

ncbi_isolation_source: aerobically stored beef

ncbi_organism_name: Pseudomonas lundensis

ncbi_submitter: CSIRO Agriculture and Food


ncbi_organism_name: Burkholderia sp. SJZ115

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Ralstonia edaphi

ncbi_submitter: LM-UGent


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: Southern Ocean

ncbi_organism_name: Pseudoalteromonas ruthenica


ncbi_country: Colombia: Bogota

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_country: China: Hebei

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_country: China:Jiangxi; Jiujiang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: China

ncbi_organism_name: Slackia sp. ZJ350

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Pilosibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Ignavibacteriales bacterium


ncbi_organism_name: Candidatus Methylopumilus planktonicus

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_organism_name: Bifidobacterium animalis


ncbi_submitter: Haikou People's Hospital


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Plant Pathology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Salmonella sp. 741265070_HSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 14d patty soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Peking university


ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC017993

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: University of Chicago


ncbi_country: Chile: Santiago

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad del desarrollo


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudarthrobacter enclensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: USA

ncbi_isolation_source: marine alga Palmaria palmata

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Japan

ncbi_organism_name: Methylobacterium gregans


ncbi_organism_name: Aquimarina algiphila

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: soil

ncbi_organism_name: Brevibacillus reuszeri

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acetoanaerobium noterae


ncbi_country: Turkey: Ankara

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Middle East Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Salmonella enterica CVM 43798 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_submitter: Texas Tech University


ncbi_isolation_source: honey

ncbi_organism_name: Saccharibacter sp. 3.A.1

ncbi_submitter: NARIC


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_isolation_source: clinical

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1811


ncbi_isolation_source: wound swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Exercitatus varius

ncbi_submitter: University of Copenhagen


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Bordetella bronchiseptica A1-7

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Bradymonadales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Bradymonadales;x__environmental samples;s__uncultured Bradymonadales bacterium


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Fujita Health University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Yueliang Tianchi

ncbi_isolation_source: water

ncbi_organism_name: Paucibacter sp. Y2R2-4

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4236

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4236


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: Biology Centre CAS


ncbi_assembly_name: Rumen uncultured genome RUG11699

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Flavonifractor plautii 1_3_50AFAA

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: smoked salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: KSC 283

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NORHED grant


ncbi_organism_name: Vibrio pomeroyi

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Artificial municipal wastewater treatment

ncbi_organism_name: Synechococcales cyanobacterium CNB

ncbi_strain_identifiers: CNB

ncbi_submitter: Peking University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Arkansas

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM21537


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Kyrpidia tusciae DSM 2912

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Alicyclobacillaceae;g__Kyrpidia;s__Kyrpidia tusciae;x__Kyrpidia tusciae DSM 2912


ncbi_submitter: University of Connecticut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 45:g,z51:-


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: CCUG 7206

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Australia

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes AA216

ncbi_submitter: University of Maryland IGS


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: University of Pavia


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-333-C14

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Kenya

ncbi_organism_name: Porphyromonadaceae bacterium UBA6379

ncbi_submitter: University of Queensland


ncbi_country: USA: Texas

ncbi_isolation_source: Oral

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: The University of Texas at Dallas


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_organism_name: Streptomyces venezuelae ATCC 10712

ncbi_submitter: John Innes Centre


ncbi_country: Australia: Newcastle

ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces sp. NPDC057539

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_organism_name: Agathobaculum sp.


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Aeromonas media

ncbi_submitter: Northumbria University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: screen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Chile

ncbi_isolation_source: Powdered infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Lysinibacillus sp. SGAir0095

ncbi_submitter: Nanyang Technological University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2098


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Streptomyces sp. NPDC046978

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhizobium aethiopicum

ncbi_strain_identifiers: SEMIA 428

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Thailand: Trang

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_submitter: Wenzhou medical university


ncbi_strain_identifiers: NCPPB 3086

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas axonopodis;x__Xanthomonas axonopodis subcluster 9.5;x__Xanthomonas axonopodis pv. desmodiilaxiflori


ncbi_isolation_source: plant

ncbi_organism_name: Rhizobium sp. AC27/96

ncbi_submitter: Oregon State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Alachua

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Wenyingzhuangia sp.

ncbi_submitter: Yantai University


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_submitter: Next generation Ecosystem Experiment Arctic

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;x__unclassified Candidatus Methylacidiphilales;s__Candidatus Methylacidiphilales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: L'Oreal


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics