ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Russia: Chersky

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


gtdb_representative: f

ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: United Kingdom

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Swansea University


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_assembly_level: Scaffold

ncbi_organism_name: Novosphingobium resinovorum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: New Zealand

ncbi_isolation_source: Diphtheritic lesion

ncbi_organism_name: Corynebacterium sp. 71B

ncbi_submitter: Northumbria University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Yellow Sea

ncbi_isolation_source: sea water of a tidal flat

ncbi_organism_name: Rossellomorea aquimaris TF-12

ncbi_refseq_category: reference genome

ncbi_submitter: Cinvestav-Irapuato


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1703

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: udder

ncbi_organism_name: Arcanobacterium bovis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_assembly_level: Complete Genome

ncbi_country: Germany: Bochum

ncbi_isolation_source: ear

ncbi_organism_name: Auritidibacter ignavus

ncbi_submitter: Institut fuer Medizinische Laboratoriumsdiagnostik Bochum GmbH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_isolate: SPRUCE 351

ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_strain_identifiers: SPRUCE 351

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- KR_bin-2092

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Enterococcus canintestini

ncbi_submitter: Washington University in Saint Louis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pluralibacter gergoviae

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Sphingobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Jilin

ncbi_isolation_source: xylem sap

ncbi_organism_name: Pseudomonas protegens

ncbi_strain_identifiers: CCNPK 811

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; Cofradia de San Pedro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pomona


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: nodules

ncbi_organism_name: Mesorhizobium sp. B264B2A

ncbi_submitter: Curtin University


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: New York; Conesus Lake

ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: University of Montana


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Throat swab 3

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptoniphilus sp.

ncbi_submitter: EBI


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Barnesiella sp.

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: terrestrial

ncbi_organism_name: Lachnoclostridium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Germany

ncbi_isolation_source: Wild bird

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Ireland

ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Prevotella sp.


ncbi_country: China

ncbi_isolation_source: crude oil-polluted soil

ncbi_organism_name: Hoyosella subflava DQS3-9A1

ncbi_submitter: College of Engineering, Peking University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces laurentii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_assembly_name: IMG-taxon 2684622844 annotated assembly

ncbi_organism_name: Streptococcus equi

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: IA

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: freshwater MAG --- Ja2-D2_bin-0462

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_isolation_source: kidney

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Manitoba

ncbi_isolation_source: ear exudate

ncbi_organism_name: Pigmentiphaga sp. NML080357

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Malan

ncbi_organism_name: Deinococcus wulumuqiensis R12

ncbi_submitter: BGI-Qingdao


ncbi_country: Brazil: Rio Grande do Sul; Planalto

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Argentina

ncbi_isolation_source: soil

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: National Chung Cheng University


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_assembly_name: De novo Assembly

ncbi_country: Malaysia

ncbi_isolation_source: tongue

ncbi_organism_name: Klebsiella pneumoniae T2-1-2

ncbi_submitter: University of Malaya


ncbi_organism_name: Xanthomonas sp. WHRI 10064A

ncbi_strain_identifiers: WHRI 10064A

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Northeastern University


ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA

ncbi_isolation_source: tissue

ncbi_organism_name: Klebsiella pneumoniae MRSN 3852

ncbi_strain_identifiers: MRSN 3852

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MRSN 3852


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Hydrothermal Plume

ncbi_organism_name: Rhodospirillales bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Germany: Heidelberg

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (MCD) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_submitter: Yangzhou University


ncbi_isolation_source: hyperthermophilic anaerobic system

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces albus

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: marine

ncbi_organism_name: Hyphomonas atlantica

ncbi_submitter: University of Queensland


ncbi_country: Germany: Freiburg

ncbi_isolation_source: infected wound from a dog bite

ncbi_organism_name: Corynebacterium canis

ncbi_submitter: Bielefeld University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFOXYC2_FULL_43_16


ncbi_country: South Korea

ncbi_isolation_source: Stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_country: France

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_country: Baltic Sea: Landsort Deep; Station M0063

ncbi_isolation_source: deep-sea sediment

ncbi_organism_name: Desulfosporosinus fructosivorans

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: China: Hebei Province

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: Rumen uncultured genome RUG14503

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella sp. C408

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Sichuan University


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Agathobacter rectalis


ncbi_assembly_name: freshwater MAG --- Loc080925-5m_bin-0994

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Spain: A corunna

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Brevundimonas sp. 12-68-7


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Mycoplasma yeatsii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Brachyspira intermedia

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Bulgaria

ncbi_submitter: Dalian University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_organism_name: uncultured Cardiobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-0197

ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: IMG-taxon 2626541589 annotated assembly

ncbi_organism_name: Succinivibrio dextrinosolvens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospiraceae bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: UHT milk

ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_strain_identifiers: SAD

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Kocuria carniphila

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Belgium

ncbi_isolation_source: Fruit of Myrica rubra

ncbi_organism_name: Gluconobacter japonicus

ncbi_submitter: Ghent University


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: blood

ncbi_organism_name: Legionella micdadei

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: USA: CA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: Viet Nam:Hanoi

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: CBGP


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Malaysia: Pagoh

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Burkholderia sp. IMCC1007

ncbi_submitter: University of Technology Malaysia


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Taiwan: Cigu Township

ncbi_organism_name: Nocardiopsis sp. FIRDI 009

ncbi_strain_identifiers: FIRDI 009

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Anaerolineaceae bacterium UBA2260

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_isolation_source: SP4 medium; Universite de Rennes

ncbi_organism_name: Spiroplasma melliferum KC3

ncbi_submitter: Research Institute for Physico-Chemical Medicine, Ministry of Public Health and Social Development of Russia


ncbi_country: China: Yunnan; Jizi village

ncbi_organism_name: Yersinia pestis

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_country: China: Qingdao; Shandong province

ncbi_isolation_source: peanut rhizosphere soil

ncbi_organism_name: Bacillus sp. B28

ncbi_submitter: Shandong agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B28


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Peru

ncbi_isolation_source: String method

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: National Cancer Institue


ncbi_country: China: Changzhou;Jiangsu

ncbi_isolation_source: Aerobic activated sludge

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: South China University of Technology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0572

ncbi_submitter: Broad Institute


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Stanford University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-317

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: new MAG-317

ncbi_submitter: Micoorganism


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Coriobacteriales bacterium


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Synechococcus sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Staphylococcus aureus M0494


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: College of Life Sciences, Nankai University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: University of Queensland


ncbi_country: Germany: Planegg-Martinsried

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas inefficax

ncbi_submitter: LMU Munich


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Altererythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Tunisia

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Lithuania

ncbi_isolation_source: chicken meat

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: China: Zhejiang

ncbi_isolation_source: food

ncbi_organism_name: Salmonella sp. zj-f87

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: USA:California Monterey

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Rumen uncultured genome RUG10626

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Japan: Niigata

ncbi_isolation_source: paddy soil

ncbi_organism_name: Geomonas ferrireducens

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: USA: Texas

ncbi_isolation_source: blood

ncbi_organism_name: Vibrio tarriae

ncbi_submitter: CDC


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_assembly_name: Leuconostoc

ncbi_country: Denmark

ncbi_isolation_source: undefined mesophilic cheese starter culture

ncbi_organism_name: Leuconostoc pseudomesenteroides PS12

ncbi_submitter: Copenhagen University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Urbifossiella sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Aestuariivirga sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Acetobacter malorum

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Campylobacteraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Salmonella sp. SC3

ncbi_submitter: Sichuan University


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_assembly_name: Rumen uncultured genome RUG13820

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Aureimonas sp. AU40

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea: Haeundae; Busan

ncbi_isolation_source: sand

ncbi_organism_name: Sphingomonas sabuli

ncbi_submitter: Dongguk University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Chitinibacter tainanensis


ncbi_assembly_name: Rumen uncultured genome RUG14835


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Linnaeus University


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Plantibacter flavus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Yunnan Province

ncbi_isolation_source: Phosphate Mine

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Biology Institute of Henan Academy of Scien

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Blautia sp.


ncbi_country: Canada: Mont St-Gregoire; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: Denmark: Damhusaen

ncbi_isolation_source: activated sludge from Damh_18-Q3-R51-60

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cerina litoralis

ncbi_submitter: Oceanography Institute


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: environmental surface of zoo

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1070

ncbi_submitter: Broad Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Koln

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: San Diego

ncbi_isolation_source: sputum

ncbi_submitter: San Diego State University


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Canada: Toronto

ncbi_submitter: University of Toronto


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Guangxi

ncbi_isolation_source: surface-sterilized bark

ncbi_organism_name: Hephaestia mangrovi

ncbi_submitter: Life sciences Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Stockholm University


ncbi_country: Germany

ncbi_isolation_source: trachea; lung

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: FL

ncbi_isolation_source: vagina of a dog

ncbi_organism_name: Mycoplasmopsis canis UF31

ncbi_submitter: University of Florida


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: central veneous catheter

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: IMMH Institute for medical microbiology and hygiene


ncbi_country: Italy

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_country: USA

ncbi_submitter: CDC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 1 day

ncbi_submitter: Shantou University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Frontopsylla elatoides

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Texas; Houston

ncbi_isolation_source: blood

ncbi_submitter: The UT MD Anderson Cancer Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Minnesota

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Ghana: Ashiaman Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: ARWAIA

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_country: China: Chengdu

ncbi_isolation_source: Bird (Egret) feces BE2

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Streptomyces olivoverticillatus

ncbi_strain_identifiers: CECT 3266

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France: Lille

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Pontibacter sp. G13

ncbi_submitter: Guangxi University


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nocardia asteroides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Janthinobacterium lividum

ncbi_submitter: doe


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Acidisoma sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 670

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Parvibaculaceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Tistrella mobilis

ncbi_submitter: Shenzhen Bay Lab


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: India: Guwahati; Assam; Mainakhorong; Garchuk Main area

ncbi_isolation_source: retail fish market

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG12490

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0043

ncbi_submitter: Broad Institute


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Serratia sp. PL2

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. PL2


ncbi_country: Italy: L Aquila

ncbi_isolation_source: feces

ncbi_submitter: IZSAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: intestine of suckling rats

ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Laboratory of Cellular Microbiology, School of Veterinary Medicine, Kitasato University


ncbi_assembly_name: freshwater MAG --- Loc081215-5m_bin-2080

ncbi_submitter: BILS


ncbi_country: Brazil: Bahia

ncbi_isolation_source: Biofilm formed on glass slides submerged in a sewage for 72 hours

ncbi_organism_name: Leptospira soteropolitanensis

ncbi_submitter: Federal University of Bahia


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.1 filter

ncbi_organism_name: Spirochaetes bacterium GWF1_41_5

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__unclassified Spirochaetota;s__Spirochaetes bacterium GWF1_41_5


ncbi_isolation_source: root nodule

ncbi_organism_name: Paraburkholderia piptadeniae

ncbi_submitter: IRD


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Elizabethkingia ursingii

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces lincolnensis

ncbi_strain_identifiers: NRRL 2936

ncbi_submitter: shanghaijiaotong university


ncbi_organism_name: Clostridioides difficile P9

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptomyces sp. NPDC001652

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea: Gyeonggi-do; Anseong-si

ncbi_isolation_source: chicken meat

ncbi_organism_name: Acinetobacter pullicarnis

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Raoultella sp. 18117

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Norwegian University of Life Sciences, Faculty of Veterinary Medicine


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Ligilactobacillus acidipiscis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sea water

ncbi_organism_name: Bacillus sp. CHD6a

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. CHD6a


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: China: Shanghai

ncbi_submitter: Huashan hospital


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pakistan

ncbi_isolation_source: alcohol foam dispenser in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Campylobacterales bacterium


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Belgium: Woluwe river

ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan

ncbi_strain_identifiers: ICMP 9853

ncbi_submitter: New Zealand Genomics Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae;x__Pseudomonas syringae pv. actinidiae ICMP 9853


ncbi_country: China: Huzhou

ncbi_isolation_source: stool sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou cdc


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: wasteland soil

ncbi_organism_name: Rothia terrae

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Hafnia psychrotolerans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Dietzia sp.

ncbi_submitter: NIH/NHGRI


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Australia

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_organism_name: Acrocarpospora macrocephala


ncbi_organism_name: Campylobacter jejuni subsp. doylei


ncbi_isolate: AOP42_C2_surf _bin _20

ncbi_organism_name: Microbacterium sp.

ncbi_strain_identifiers: AOP42_C2_surf _bin _20

ncbi_submitter: Genoscope


ncbi_country: Arctic Ocean

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces sp. R527F

ncbi_submitter: Polar Research Institute of China


ncbi_isolation_source: Mix of beef trim from USA and Australia

ncbi_submitter: University of Texas at San Antonio


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0076

ncbi_submitter: Broad Institute


ncbi_country: USA: DC

ncbi_isolation_source: Jejunal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Methylobacterium nodulans ORS 2060

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Sulfuricurvum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Leuconostoc;s__Leuconostoc mesenteroides;sb__Leuconostoc mesenteroides subsp. cremoris;x__Leuconostoc mesenteroides subsp. cremoris ATCC 19254


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: SponGES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_country: China: Hubei; Xinzhou

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-355-K10


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Russia: Saratov

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: Linnaeus University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptococcus uberis


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Syntrophaceae bacterium UBA4803

ncbi_submitter: University of Queensland


ncbi_isolation_source: rabbit gut

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_submitter: Center for Microbial Communities


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: bacterium

ncbi_submitter: University of Gothenburg


ncbi_assembly_name: freshwater MAG --- Loc090116-8m_bin-0969

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC101062

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Bacillus sp. (in: firmicutes)

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. (in: firmicutes)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Microcoleus sp. Aus8_D1

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Hangzhou

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Moraxella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Thailand: Ubon; Kemarach

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: United Kingdom: England

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Ireland

ncbi_isolation_source: Bin

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: Maine

ncbi_isolation_source: hospital patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maine at Presque Isle


ncbi_country: USA: New York; NY

ncbi_submitter: MSKCC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Agromyces sp. GXS1127

ncbi_submitter: Guangxi Minzu University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Segatella copri

ncbi_submitter: Veterinary Research Institute


ncbi_country: Switzerland

ncbi_isolation_source: facial wound

ncbi_organism_name: Mycolicibacterium wolinskyi

ncbi_submitter: University of Trento


ncbi_country: USA

ncbi_isolation_source: CF Maxillary Sinus

ncbi_organism_name: Burkholderia latens


ncbi_organism_name: Listeria sp. ILCC804

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY


ncbi_country: Philippines: Uno; Malilipot; Albay

ncbi_isolation_source: Volcanic Soil

ncbi_organism_name: Streptomyces sp. UNOC14_S4

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Mangrovitalea sediminis

ncbi_submitter: Xiamen University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Phaeodactylibacter sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC090025

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: terrestrial

ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Niallia sp. XMNu-256

ncbi_submitter: Hebei North University


ncbi_country: China: Henan Province

ncbi_isolation_source: swine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Arctic Ocean

ncbi_isolation_source: beach

ncbi_organism_name: Pseudoalteromonas sp. c7(2019)

ncbi_submitter: Shandong University


ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: National Cancer Institute - NIH


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: Bumblebee; B. terrestris

ncbi_organism_name: Secundilactobacillus kimchicus

ncbi_submitter: Ghent University


ncbi_organism_name: Streptomyces sp. NPDC002138

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudoxanthomonas kaohsiungensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Yellow Sea Fisheries Research Institute


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Cryomorphaceae;x__unclassified Cryomorphaceae;s__Cryomorphaceae bacterium BACL11 MAG-121001-bin54


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BiOSSE


ncbi_assembly_name: gabuh2307 v01

ncbi_isolation_source: trachea

ncbi_organism_name: Acinetobacter baumannii UH2307

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Enterococcus faecalis EnGen0356

ncbi_submitter: Broad Institute


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC04657

ncbi_submitter: University of Toronto


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Brazil

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Hungatella effluvii

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Richmond; VA

ncbi_isolation_source: urine

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: rectum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli M8

ncbi_submitter: Department of Pediatrics, Washington University School of Medicine


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Otoolea sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Toho university


ncbi_organism_name: Lysinibacillus sp. RS11

ncbi_submitter: Athabasca University


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bradyrhizobium sp. HKCCYLS2033

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolate: SPRUCE 524

ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 524

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Antarctica: Western Antarctica; Lagoon Island

ncbi_isolate: LAG bin50

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_strain_identifiers: LAG bin50

ncbi_submitter: Monash University


ncbi_organism_name: Nocardia sp. NPDC004654

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: laboratory strain

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Endosaccharibacter trunci

ncbi_submitter: Rajamangala University of Technology Isan


ncbi_organism_name: Streptomyces sp. B21-097

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_assembly_name: Rumen uncultured genome RUG13128

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Stenotrophomonas forensis

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Ecuador: Quito

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Rossellomorea vietnamensis

ncbi_strain_identifiers: UKM 5

ncbi_submitter: National University of Malaysia


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WM6391

ncbi_submitter: University of Illinois


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_organism_name: Bacteroides fragilis


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Denmark

ncbi_isolation_source: smoked eel

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Virchow


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Arthrobacter globiformis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Anaerophaga sp.

ncbi_submitter: The Ohio State University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Anaeromassilibacillus sp.


ncbi_country: Venezuela: Auyan Tepui

ncbi_isolation_source: Enrichment culture (in minimal medium and darkness) of a quartzite sample collected from a wall inside the Imawari Yeuta cave in Auyan Tepui (Venezuela)

ncbi_organism_name: Sphingomonas sp. QA11

ncbi_submitter: University of Bologna


ncbi_organism_name: Pseudomonas brenneri

ncbi_submitter: University of British Columbia


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_assembly_name: Serratia assembly

ncbi_organism_name: Serratia marcescens

ncbi_submitter: UB


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Science and Technology of Hanoi (USTH)


ncbi_country: China: Xinjiang; Karamay Oilfield

ncbi_isolation_source: petroleum-contaminated soil

ncbi_organism_name: Dietzia natronolimnaea

ncbi_submitter: Tongji University


ncbi_country: Italy: Veneto

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus thermophilus TH1477

ncbi_submitter: University of Padua


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Salmonella sp. NW429

ncbi_submitter: Sichuan University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Sudan: Khartoum

ncbi_isolation_source: urine

ncbi_strain_identifiers: Kasamber

ncbi_submitter: International University of Africa


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_submitter: US Meat Animal Research Center


ncbi_organism_name: Salmonella sp. NW35


ncbi_country: Germany: Animal Facility; Justus-Liebig-University; Giessen

ncbi_isolation_source: Surface of a polyethylene microplastic particle present in tank 6 of a marine aquarium containing stony-coral fragments and water maintained at 26 degree C

ncbi_organism_name: Sulfitobacter sp. THAF37

ncbi_submitter: Uni Bielefeld


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Belgium

ncbi_submitter: Universiteit Gent


ncbi_country: USA: Pennsylvania; Scalp Level

ncbi_isolation_source: biofilm

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptococcus mitis


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 40P5 1_1

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus 40P5 1_1


ncbi_organism_name: Nitrosomonadales bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Dental plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Mali: Point G Hospital

ncbi_organism_name: Mycobacterium tuberculosis MAL020181


ncbi_assembly_name: Salmonella enterica CVM N32055-SQ v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_country: USA: Montana

ncbi_isolation_source: field isolate

ncbi_organism_name: Brucella abortus B10-0973


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Brazil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto Butantan


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2382

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: shandong university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Veillonella seminalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: Mackay Glacier regions; Mount Gran

ncbi_isolation_source: mineral soil

ncbi_organism_name: Sporichthya sp.

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium halotolerans

ncbi_submitter: Xinjiang Normal University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella oxytoca


ncbi_organism_name: Porphyromonadaceae bacterium UBA7114


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Haemophilus sputorum

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: India: Suburban Bengaluru; Bengaluru Urban district; Karnataka State

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Sulfitobacter sp. R86518

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Escherichia coli

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Vreelandella alkaliphila

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Flavobacterium soyae

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_submitter: The Italian National Institute of Health


ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Portugal: North and Centre

ncbi_isolation_source: meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculty of Pharmacy, University of Porto


ncbi_submitter: EPFL


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W21940

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Olsenella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_country: Australia: The University of Queensland

ncbi_isolation_source: laboratory generated clone

ncbi_organism_name: Photobacterium damselae subsp. piscicida

ncbi_submitter: The University of Queensland


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-283

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-283


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Control Grass (No Manure)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GC T1 SC CEF 1

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-56A1

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: Rumen uncultured genome RUG11829

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Barcelona

ncbi_isolation_source: exudate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitari Vall d'Hebron


ncbi_country: China: Shenzhen

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter fetus subsp. testudinum

ncbi_submitter: Guangzhou University of Chinese Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacillus sp.


ncbi_country: USA: CA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_isolation_source: ceacal content

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Chinese Academy of Science


ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCJR17_020

ncbi_submitter: University of California, Irvine


ncbi_organism_name: Leptonemataceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_submitter: Cornell University


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: Streptomyces sp. NPDC005840


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_isolate: wCauB

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wCauB

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Washington


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: OR

ncbi_isolation_source: chicken breast

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University