ncbi_country: Mexico: California Gulf

ncbi_isolation_source: Sea sediment

ncbi_organism_name: Micromonospora sp. BL1

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Gemmata sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Scaffold

ncbi_assembly_name: Vsuperstes

ncbi_organism_name: Vibrio superstes

ncbi_refseq_category: reference genome

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

ncbi_assembly_level: Complete Genome

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Uzbekistan: Kyzylkum desert

ncbi_isolation_source: salt crust on the soil surface

ncbi_organism_name: Modestobacter sp. VKM Ac-2982

ncbi_strain_identifiers: VKM Ac-2982

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_organism_name: Raoultella sp. 18099

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Bifidobacterium sp. UMB6791B

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Wenzhouxiangella sp.


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Streptomyces avermitilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Azorhizobium sp. AG788

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Streptomyces albus


ncbi_organism_name: Salmonella sp. NW605

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Woeseia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Curtobacterium sp. AB7

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Kribbella sp. CA-247076

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: bacterium MSK20_81

ncbi_submitter: University of Chicago


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Iowa


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: Kalmar county hospital


ncbi_country: Chile: Temuco

ncbi_isolation_source: Pulmonary secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Lactococcus muris

ncbi_submitter: Nanjing University


ncbi_country: Democratic Republic of the Congo: South-Kivu; Lake Kivu; Kabuno Bay

ncbi_isolation_source: freshwater from lake

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Ruminococcus callidus


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA:Florida; Long Key

ncbi_organism_name: Verrucosispora sp. WMMA2121

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Kenya

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Michigan

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: water

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_assembly_name: Brucella abortus I-12

ncbi_country: Russia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Clostridium sp. AM49-4BH

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Puerto Rico

ncbi_isolation_source: Skin

ncbi_submitter: University of Puerto Rico-Medical Sciences Campus


ncbi_organism_name: Rahnella aquatilis


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Iowa State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Noviherbaspirillum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: India: Pune

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Bodily Fluid

ncbi_organism_name: Mycobacterium tuberculosis CDC1551

ncbi_submitter: Broad Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Pakistan

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: FDA


ncbi_isolation_source: strain HG001 was generated by Silvia Herbert in 2010 in the Microbial Genetics department of University of Tubingen; Germany; Herbert received the parental strain NCTC8325 from Richard Novick (NYU Langone Medical Center); parental strain NCTC8325 was isolated in 1960 from a sepsis patient at Colindale; Central Public Health Laboratory; London; UK

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CNRS


ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: USDA-ARS-USMARC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Nitrosopelagicus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Nitrososphaerota;x__Nitrososphaerota incertae sedis;g__Candidatus Nitrosopelagicus;x__unclassified Candidatus Nitrosopelagicus;s__Candidatus Nitrosopelagicus sp.


ncbi_assembly_name: Salmonella enterica CVM N51273 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Actinocrinis sp.


ncbi_country: United Kingdom

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: USA: Sinepuxent Island; MD

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_isolation_source: cold seep

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Australia

ncbi_organism_name: Streptococcus agalactiae


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_type_species_of_genus: t

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis JCM 5805 = NBRC 100933


ncbi_country: Russia:Vologda region

ncbi_isolation_source: water sample

ncbi_organism_name: Limnoglobus roseus

ncbi_submitter: Federal Research Centre "Fundamentals of Biotechnology" of RAS


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: USA: San Marcos; TX

ncbi_isolation_source: Wild adult 3.3

ncbi_organism_name: Serratia sp. S0636

ncbi_submitter: Texas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. S0636


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Yancheng City; Jiangsu Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_submitter: Maharshi Dayanand University, Rohtak


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Mucispirillum schaedleri


ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Sporosarcina jeotgali

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: Mauritius: Pointe aux Piments

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Mauritius


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: EMG


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Finland

ncbi_isolation_source: patient with IBS

ncbi_organism_name: Ruminococcus sp. DSM 100440

ncbi_submitter: Helsinki University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_country: Canada: British Columbia; Basque Lake

ncbi_isolation_source: epsomite crystals

ncbi_organism_name: Halobacillus sp. A5

ncbi_submitter: The Open University


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Enterocloster clostridioformis


ncbi_isolate: SPRUCE 396

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 396

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil: Espirito Santo State

ncbi_isolation_source: estuarine soil

ncbi_organism_name: Mucilaginibacter sp. 21P

ncbi_submitter: Universidad de La Frontera


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Peru: Chaupimarca; Pasco

ncbi_isolation_source: water lake acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Eubacterium faecipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom: Westonbirt Arboretum

ncbi_isolation_source: outer bark

ncbi_organism_name: Brenneria tiliae

ncbi_submitter: University of the West of England


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Shanghai Municipal Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella sp. R18

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Salmonella sp. 741265065_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Gemmiger formicilis


ncbi_country: Netherlands

ncbi_isolation_source: Secondary rapid sand filter

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMG


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Flavonifractor plautii


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: Indian Ocean: Southwest Indian Ridge

ncbi_isolation_source: marine sediments

ncbi_organism_name: Virgibacillus indicus

ncbi_submitter: Institute of Microbiology, CAS


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2112


ncbi_assembly_level: Chromosome

ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Oceanobacillus kimchii X50

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Klebsiella sp. 72742

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Tunturiibacter gelidiferens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Brachyspira sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: Guangdong

ncbi_isolation_source: forest soil

ncbi_organism_name: Collimonas silvisoli

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_submitter: SRCAMB


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-657

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Samoa


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Princeton University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Nonlabens tegetincola

ncbi_submitter: Tang lab


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_country: Australia

ncbi_isolation_source: Environmental dairy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: CNPSo 38

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: feces; 2 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_submitter: bioBiome, Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo065

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Rhodobacterales bacterium 32-67-9


ncbi_country: Italy: Teramo

ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Teramo


ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: India: Kolkata

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_country: India

ncbi_isolation_source: Marine mud

ncbi_organism_name: Photobacterium indicum

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_assembly_name: Rumen uncultured genome RUG12451

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Chicago

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: CA

ncbi_isolation_source: intestine domestic rabbit

ncbi_organism_name: Escherichia coli


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Blautia sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Atribacter allofermentans

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Korea: Cheonan Province

ncbi_isolation_source: mine area soil

ncbi_organism_name: Pseudomonas shirazica

ncbi_submitter: INHA University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: Denmark

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: South Korea: Geumjeong mountain; Busan

ncbi_isolation_source: Soil

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Department of Civil and Environmental Engineering,Pusan National University


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Gallibacter intestinalis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: gut

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Coxiella-like endosymbiont

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Salinibacterium xinjiangense

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Hunan Normal university


ncbi_submitter: Shanghai Fisheries Research Institute


ncbi_organism_name: Bacteroides ovatus


ncbi_organism_name: Candidatus Spyradenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Lentisphaerales;f__Lentisphaeraceae;x__Lentisphaeraceae incertae sedis;g__Candidatus Spyradenecus;x__unclassified Candidatus Spyradenecus;s__Candidatus Spyradenecus sp.


ncbi_organism_name: uncultured Fusobacteriaceae bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Czech Republic: Plzen

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Charles University in Prague


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1391 from squamous cell carcinomas patient MST003

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Shanghai

ncbi_organism_name: Acinetobacter sp. YH01008

ncbi_submitter: South China Agricultural University


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Neisseria sicca

ncbi_submitter: BGI


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: Texas; Houston; Johnson Space Center

ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Mycoplasma sp. VS509_3

ncbi_submitter: Institute of Microbiology


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: laboratory; from Streptomyces rimosus R6-500MV9

ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: TU Kaiserslautern


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Knoellia locipacati

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Viet Nam: Nha Trang

ncbi_isolation_source: throat swab

ncbi_strain_identifiers: NT 15

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Scatousia;s__Candidatus Scatousia excrementigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Scatousia;s__Candidatus Scatousia excrementigallinarum


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Schwartzia sp. (in: firmicutes)

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;x__unclassified Schwartzia (in: firmicutes);s__Schwartzia sp. (in: firmicutes)


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_country: China: Guigang

ncbi_isolation_source: manure

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: frozen Tangyuan product

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai JiaoTong University


ncbi_country: Germany: Ulm

ncbi_isolation_source: feces from a healthy adult

ncbi_organism_name: Bifidobacterium longum E18

ncbi_submitter: Ulm University


ncbi_country: Greenland: Scoresbysund

ncbi_isolation_source: gingival mucosa

ncbi_organism_name: Ursidibacter maritimus

ncbi_submitter: University of Copenhagen


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Mexico

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya: Nairobi

ncbi_submitter: USAMRD-A


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_country: Slovenia: Ljubljana

ncbi_isolation_source: Oropharinx

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_country: China: Zhejiang; Hangzhou

ncbi_submitter: Zhejiang university


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Corynebacterium sp. HMSC077D10

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: South Africa

ncbi_isolation_source: Irrigation water

ncbi_strain_identifiers: UPMP 2066

ncbi_submitter: University of Pretoria


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Benson; MN

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Ireland

ncbi_isolation_source: Mushroom preparation

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_submitter: University of Bergen


ncbi_organism_name: Pseudomonas sp. NPDC079069

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: spoiled wine fermentation

ncbi_submitter: Uppsala university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Apilactobacillus;s__Apilactobacillus kunkeei;x__Apilactobacillus kunkeei DSM 12361 = ATCC 700308


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Microbacterium sp. NPDC089698


ncbi_organism_name: Streptomyces sp. NBC_00257

ncbi_submitter: Technical University of Denmark


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Oregon State University


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Leipzig

ncbi_isolation_source: Labor

ncbi_organism_name: Synechocystis sp. PCC 6803


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Comamonadaceae bacterium OH2310_COT-174

ncbi_submitter: UC Davis


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Saccharospirillum sp. HFRX-1

ncbi_submitter: Shandong University at Weihai


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- Umea1_bin-2905

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chungbuk National University


ncbi_organism_name: Phycisphaerae bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_organism_name: Streptomyces huasconensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_assembly_name: Rumen uncultured genome RUG13167

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shenzhen

ncbi_submitter: the sixth affiliated hospital of Shenzhen University Health Science Center


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: traditional greek kasseri cheese

ncbi_organism_name: Streptococcus macedonicus ACA-DC 198

ncbi_strain_identifiers: ACA-DC 198

ncbi_submitter: Agricultural University of Athens, Greece


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: West Creek Plum Island Estuary

ncbi_isolation_source: Nitrate enriched sediment from core 1 10 to 15cm

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Northeastern University


ncbi_country: Belgium

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_assembly_name: CLC assembled contigs

ncbi_country: Saudi Arabia

ncbi_isolation_source: sea water

ncbi_organism_name: Candidatus Pelagibacter communis

ncbi_strain_identifiers: SCGC AAA795-P11

ncbi_submitter: UNIVERSITY OF CALIFORNIA - SAN DIEGO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;s__Candidatus Pelagibacter communis


ncbi_country: Canada: Lacombe

ncbi_organism_name: Candidatus Colimorpha enterica

ncbi_submitter: AAFC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Colimorpha;s__Candidatus Colimorpha enterica


ncbi_assembly_name: IMG-taxon 2724679730 annotated assembly

ncbi_organism_name: Thalassovita litoralis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG12417

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Lacticaseibacillus paracasei subsp. tolerans

ncbi_submitter: Korea Research Institue of Bioscience a


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lactobacillaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Thomasclavelia cocleata


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_country: Australia

ncbi_isolation_source: dairy cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: CSIRO


ncbi_organism_name: Coleofasciculaceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Shandong

ncbi_isolation_source: commercial chicken farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: United Kingdom


ncbi_organism_name: Rhodospirillaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Mediterraneibacter caccavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC012485

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Hebei province; Zhangjiakou

ncbi_isolation_source: dried saline lake

ncbi_organism_name: Nocardioides sp. ChNu-153

ncbi_submitter: Hebei North University


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Haemophilus sp.


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF15-49

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonas synxantha

ncbi_submitter: The University of Birmingham


ncbi_organism_name: uncultured Thiosulfatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_isolation_source: human listeriosis

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Streptomyces sp. NPDC088744


ncbi_organism_name: Aeromonas sp. 159

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: USA: AL

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: caecum

ncbi_organism_name: Actinomyces viscosus

ncbi_submitter: Veterinary Research Institute


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Sodalis sp. (in: enterobacteria)

ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Bruguierivoracaceae;g__Sodalis;x__unclassified Sodalis (in: enterobacteria);s__Sodalis sp. (in: enterobacteria)


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. diarizonae

ncbi_submitter: The First Affiliated Hospital College of Medicine Zhejiang University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Yangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the Affiliated Hospital of Yangzhou University


ncbi_submitter: the seqafrica consortium


ncbi_country: Brazil: Amazon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: bacterium


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Pseudidiomarina sp.

ncbi_submitter: Ocean University of China


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_organism_name: Streptomyces sp. NPDC097727

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Chloroflexaceae bacterium


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Beijing

ncbi_isolation_source: sediments

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Blautia sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Lake Washington

ncbi_organism_name: Janthinobacterium sp. 13

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Schinkia azotoformans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University Hong Kong


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_submitter: Quadram Institutte


ncbi_country: South Korea

ncbi_organism_name: Mycobacterium tuberculosis KT-0094

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain

ncbi_isolation_source: milk

ncbi_organism_name: Lactococcus petauri

ncbi_strain_identifiers: CEP 772

ncbi_submitter: UCM


ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Loyola University Chicago


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_organism_name: Saccharopolyspora sp.


ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: tel-aviv sourasky medical center


ncbi_organism_name: Clostridioides difficile 6503

ncbi_submitter: Cornell University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: sewage sludge from the wastewater treatment plant in Sanming City; Fujian

ncbi_isolation_source: sewage sludge

ncbi_organism_name: Sedimentibacter sp. MB35-C1

ncbi_submitter: Sanming University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp. MB35-C1


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Chakrabartia godavariana

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp A-17

ncbi_strain_identifiers: Hp A-17

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: sediment and polymetallic sulfide from Okinawa hydrothermal vent

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: India: Anand District

ncbi_isolation_source: bovine milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CENTER FOR INTERDISCIPLINARY STUDIES IN SCIENCE AND TECHNOLOGY


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal content of marmot

ncbi_organism_name: Arthrobacter sp. zg-Y769

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: USA: Ohio; Lake Erie; Sandusky Bay

ncbi_isolation_source: Freshwater

ncbi_organism_name: Planktothrix agardhii 1808

ncbi_submitter: Bowling Green State University


ncbi_country: New Zealand: Ashburton

ncbi_organism_name: Pseudomonas syringae pv. coriandricola

ncbi_strain_identifiers: ICMP 9625

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. coriandricola


ncbi_organism_name: Bacillus sp. FSL K6-3431

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-3431


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: China: Shenzhen

ncbi_submitter: Tsinghua University


ncbi_organism_name: Euzebya sp.

ncbi_submitter: Tang lab


ncbi_country: USA: Washington; Lind Dryland Research Station

ncbi_organism_name: Agromyces ramosus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Norway

ncbi_isolation_source: Cod

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M1535

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_country: India: Assam

ncbi_isolation_source: Oil contaminated soil

ncbi_organism_name: Franconibacter sp. IITDAS19

ncbi_submitter: Indian Institute of Technology


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA7358

ncbi_submitter: University of Queensland


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Enterobacter sichuanensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_109 WWTPs influent

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Sphingomonas sp. PSPC2-2

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_submitter: Macrogen Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Zymomonadaceae;g__Zymomonas;s__Zymomonas mobilis;sb__Zymomonas mobilis subsp. mobilis;x__Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Flavimarina sp. Hel_I_48

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa LCT-PA102

ncbi_submitter: BGI


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: Vesical catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Streptomyces sp. NPDC051639

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Miami

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Erwiniaceae;g__Buchnera;s__Buchnera aphidicola;x__Buchnera aphidicola (Myzus persicae);x__Buchnera aphidicola str. F009 (Myzus persicae)


ncbi_country: New Zealand

ncbi_isolation_source: banana plant

ncbi_organism_name: Xanthomonas arboricola pv. celebensis

ncbi_strain_identifiers: NCPPB 1630

ncbi_submitter: University of Exeter


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Landstuhl Regional Medical Center; Landstuhl

ncbi_organism_name: Acinetobacter baumannii OIFC074

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: Nanyang Technological University


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Nagpur

ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus luminescens

ncbi_submitter: Vishal Somvanshi's shared submissions


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_submitter: Shenzhen people's hospital


ncbi_assembly_name: Bifrum

ncbi_isolation_source: Bovine rumen

ncbi_organism_name: Bifidobacterium ruminantium

ncbi_submitter: University of Parma


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Sphingomonas sp. DC2100-1

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Flavobacterium sp. W20_MBD1_R3

ncbi_submitter: United States Naval Academy


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Pleurocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus thermophilus


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Don State Technical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: uncultured Synechococcus sp.


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-0816

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_submitter: Portland State University


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Tunisia: South of Tunisia; Desert

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: University of Neuchatel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: Spain: Sevilla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHU A Coruna


ncbi_country: USA: Michigan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonas sp. P818

ncbi_submitter: Institute of Crop Sciences, Chinese Academy of Agricultural Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI


ncbi_country: China: Xinjiang Guertu

ncbi_isolation_source: Citellus undulatus

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Coraliomargarita akajimensis

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Indonesia

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S079

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S079


ncbi_organism_name: Eubacterium sp. CAG:251

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:251


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_assembly_name: Rumen uncultured genome RUG12985

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Phormidiaceae cyanobacterium CTOTU46630


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Brucella anthropi

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Norway

ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universite Laval


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Dialister sp. CAG:486


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Acinetobacter sp. N54.MGS-139

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine small

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidiphilium sp.

ncbi_submitter: EMG


ncbi_isolation_source: honeybee metagenome


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Kamchatka; Uzon Caldera

ncbi_isolation_source: thermophilic sediment from neutral hot spring

ncbi_organism_name: Thermosulfidibacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa:Rooigrond; North West Province

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O177

ncbi_submitter: North-West University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Listeria monocytogenes


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1430

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Clinical Research Center for Infectious Diseases


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Streptomyces sp. 5112.2


ncbi_assembly_name: IMG-taxon 2671180038 annotated assembly

ncbi_organism_name: Pseudonocardia ammonioxydans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: Spain: Madrid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_country: China

ncbi_isolation_source: deep-sea water

ncbi_organism_name: Rheinheimera oceanensis

ncbi_submitter: Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Spain

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Australia

ncbi_isolation_source: seeds

ncbi_organism_name: Clavibacter zhangzhiyongii

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: Santa Barbara Zoo


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Corallococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Taiwan: Kaohsiung

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Health Research Institutes


ncbi_country: France

ncbi_isolation_source: male born February 1932

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 2008-872


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Parabacteroides segnis

ncbi_submitter: Nanjing University


ncbi_country: India: Mumbai

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: China: Yangjiang

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: South China Agricultural University


ncbi_country: China: Zhejiang; Hangzhou

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: host s whole body

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: stool

ncbi_organism_name: Raoultibacter phocaeensis

ncbi_submitter: URMITE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Salmonella sp. 741265116_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Liverpool School of Tropical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Nanjing university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Dehalococcoidales bacterium


ncbi_isolate: Illumina sequencing of Elizabethkingia miricola CIP111047

ncbi_organism_name: Elizabethkingia miricola

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Henan Province

ncbi_isolation_source: swab sample of pig

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pullulanibacillus camelliae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_country: Brazil: So Paulo state; Taquaritinga city

ncbi_isolation_source: Cashew leaves with angular spot symptoms

ncbi_organism_name: Xanthomonas citri pv. anacardii

ncbi_submitter: UFRPE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. anacardii


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Greece

ncbi_submitter: bioMerieux


ncbi_isolation_source: fresh feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Rheinheimera tangshanensis


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: South Korea:Seoul

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Konkuk university


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Arthrobacter sp. 162MFSha1.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: Switzerland

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema denticola

ncbi_strain_identifiers: OMZ 898

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Chicago


ncbi_isolation_source: Food Associated Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Clavibacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: Brazil

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Italy

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_country: China: inner Mongolian

ncbi_isolation_source: culture medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: India: Haryana

ncbi_isolation_source: soil

ncbi_organism_name: Photorhabdus luminescens

ncbi_submitter: Vishal Somvanshi's shared submissions


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC