ncbi_country: China

ncbi_isolation_source: feces from chicken farm

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Sudan: Khartoum; Military Hospital

ncbi_genome_representation: full

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_country: USA: FL

ncbi_isolation_source: brain of a dog

ncbi_organism_name: Mycoplasmopsis canis UFG1

ncbi_submitter: University of Florida


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


gtdb_representative: t

ncbi_organism_name: uncultured Lewinella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: USA: New Jersey

ncbi_isolation_source: sputum

ncbi_submitter: University of Pittsburgh


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: Deep sea water

ncbi_organism_name: Streptomyces albus

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: freshwater

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus AMMC6013

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: Antarctica: Mackay Glacier regions; Mackay Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Monash University


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_country: USA: WA

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Washington


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Ductal Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: USA: Florida

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_country: USA: Boston

ncbi_isolation_source: Sputum

ncbi_organism_name: Klebsiella pneumoniae MGH 69

ncbi_strain_identifiers: MGH 69

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae MGH 69


ncbi_country: China: Ningbo

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_assembly_level: Complete Genome

ncbi_country: China: Beijing

ncbi_isolation_source: Physical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_country: Italy

ncbi_isolation_source: rice rhizosphere

ncbi_organism_name: Pseudomonas sp. 58(2021)

ncbi_submitter: International Centre for Genetic Engineering and Biotechnology (ICGEB)


ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1345


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu;Nanjing

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_assembly_level: Chromosome

ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Stenotrophomonas indicatrix


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Vibrio sp.

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_submitter: El Bosque University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Clostridium fessum


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Mbh

ncbi_isolation_source: marine aquaculture pond

ncbi_organism_name: Marichromatium bheemlicum

ncbi_refseq_category: reference genome

ncbi_submitter: Bellevue University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Vicingaceae bacterium

ncbi_submitter: Chongqing university


ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: MAC 5581 version 1

ncbi_country: USA: Louisiana

ncbi_organism_name: Mycobacterium avium 10-5581

ncbi_submitter: National Animal Disease Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;x__Mycobacterium avium 10-5581


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Germany: Berlin

ncbi_isolation_source: oropharynx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA5670

ncbi_submitter: University of Queensland


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Australia: Grafton; New South Wales

ncbi_organism_name: Bradyrhizobium brasilense

ncbi_submitter: Murdoch University


ncbi_country: Brazil: Mato Grosso do Sul; Campo Grande

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardioidaceae bacterium


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Deinococcus metallilatus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: skin lesion swab

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: orthopedic device (ODRI) sonication fluid

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Universidade Federal de Sao Paulo (UNIFESP)


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Aequoribacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Roseivirgaceae bacterium


ncbi_organism_name: Virgibacillus sp. W0430

ncbi_submitter: Lianyungang Technical College


ncbi_organism_name: Muricoccus radiodurans

ncbi_submitter: Wuhan University


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Psychrobacillus sp. NPDC058041

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Kitasatospora sp. NPDC127060


ncbi_organism_name: Enterobacter sp. A4


ncbi_organism_name: Flavobacteriales bacterium


ncbi_country: India: Rohini; Darjeeling; West Bengal

ncbi_isolation_source: Tea rhizosphere

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Bose Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acidiphilium multivorum

ncbi_strain_identifiers: QBS 4

ncbi_submitter: Central South University


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: rhizosphere of tomato plants

ncbi_organism_name: Edaphobacter sp. 12200R-103

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus sp. DIV2431

ncbi_submitter: Broad Institute


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Corynebacterium accolens ATCC 49725

ncbi_submitter: Baylor College of Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Methylobacterium organophilum

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA4866

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4866


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Togo: Lome

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite de Lome


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Rhodovulum sulfidophilum


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. W8088

ncbi_submitter: China Agricultural University


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophomonas sp.

ncbi_submitter: University of Waterloo


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Alberta


ncbi_country: Mali

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Canada: Albert

ncbi_isolation_source: Dinosaur fossil bone

ncbi_organism_name: Luteitalea sp.

ncbi_submitter: Princeton University


ncbi_strain_identifiers: NNKp 2358

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2693429824 annotated assembly

ncbi_organism_name: Paraburkholderia caballeronis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: necrotizing tonsils

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: lake water


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Streptococcus sp. FT1-106

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Legionella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: United Kingdom:England

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Brucella ovis ATCC 25840

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella ovis;x__Brucella ovis ATCC 25840


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Paenibacillus sp. NPDC056579

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Clostridium sp. AM58-1XD

ncbi_submitter: BGI


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Helicobacter japonicus


ncbi_isolation_source: colon

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Aliiroseovarius sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: gut (lower GI)

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: North Carolina State University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: Throat Culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: PERIHEPATIC FLUID

ncbi_submitter: JCVI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: China: Yangzhou

ncbi_isolation_source: caecum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Rhizobium soli

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: US Food and Drug Administration


ncbi_country: Australia: Tasmania

ncbi_isolation_source: Fish hatchery

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: Nebraska

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Clostridiales bacterium UBA3213

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus wuxiensis

ncbi_submitter: Jiangnan University


ncbi_organism_name: Boseongicola sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Bacillus subtilis


ncbi_organism_name: Streptomyces sp. WAC01280

ncbi_submitter: McMaster University


ncbi_assembly_name: freshwater MAG --- LJ-13-9m_bin-738

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_assembly_name: freshwater MAG --- LJ_bin-4100


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_assembly_name: freshwater MAG --- UppL7s_bin-1432


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Boseongicola sp. SB0665_bin_10


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sinorhizobium fredii

ncbi_strain_identifiers: USDA 217

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Tsinghua University

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tsinghua University


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_country: Antarctica: Lake Vanda; McMurdo Dry Valleys

ncbi_isolation_source: oligotrophic lake microbial mat

ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: University of California Davis

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Streptococcus canis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: BGI


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: propagated starter culture used in cheese manufacturing

ncbi_submitter: Top Institute Food and Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus cremoris;sb__Lactococcus cremoris subsp. cremoris;x__Lactococcus cremoris subsp. cremoris TIFN5


ncbi_country: South Korea:Hapcheon

ncbi_isolation_source: Fresh water

ncbi_organism_name: Sphingomonas changnyeongensis

ncbi_submitter: Korea university


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx


ncbi_country: USA: MD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Micrococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: CAU


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Schleiferiaceae bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: Salacia chinensis leaf

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudoalteromonas sp. SM9913

ncbi_submitter: ShanDong University


ncbi_country: Slovenia: Piran

ncbi_isolate: MAGLPN

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_strain_identifiers: MAGLPN

ncbi_submitter: University of California, Davis


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Georgia


ncbi_organism_name: Xanthobacteraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Atopobium sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2092


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: South Korea

ncbi_isolation_source: Mactra veneriformis

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Bulgaria

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Jouy-en-Josas

ncbi_isolation_source: human

ncbi_organism_name: Enterococcus hirae


ncbi_isolation_source: feedlot

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: USDA-ARS-USMARC


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Lysinibacillus sp.


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bifidobacterium adolescentis L2-32

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Salmonella sp. NW584

ncbi_submitter: Sichuan University


ncbi_country: USA: International Space Station

ncbi_isolation_source: Mineral Grit embedded in adhesive paper 3

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: USA: Minnesota

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: MS

ncbi_isolation_source: Peg tube drainage

ncbi_organism_name: Staphylococcus aureus DAR3772

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Sphingopyxis sp. A083

ncbi_submitter: US EPA


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: KS

ncbi_isolation_source: avian peritoneum (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: University Hospital Muenster


ncbi_country: Iraq: Camp Delta

ncbi_isolation_source: intact skin surface

ncbi_organism_name: Acinetobacter baumannii WC-692

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Pararhodobacter sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF54-6pH10A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Candidatus Scatavimonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatavimonas;x__unclassified Candidatus Scatavimonas;s__Candidatus Scatavimonas sp.


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Raoultella ornithinolytica


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Ottowia sp.

ncbi_submitter: University of Waterloo


ncbi_strain_identifiers: ATCC 8459

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Enterococcaceae;g__Enterococcus;s__Enterococcus faecium;x__Enterococcus faecium ATCC 8459 = NRRL B-2354


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_country: New Zealand: North Canterbury; near Tuahiwi

ncbi_submitter: University of Canterbury


ncbi_isolation_source: Urine

ncbi_submitter: Erasmus University Medical Center


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Acetobacter persici

ncbi_submitter: Cornell University


ncbi_organism_name: Segatella copri

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Suzhou

ncbi_organism_name: Blautia sp. MSJ-9

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Chloroflexia bacterium


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: periprosthetic tissue specimen

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_country: China: Hainan

ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura litoris

ncbi_submitter: College of life science


ncbi_country: France

ncbi_isolation_source: Pleural liquid

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Bronchial aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_assembly_name: Rumen uncultured genome RUG292

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-0576

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriales bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Acidobacteriota bacterium


ncbi_country: China: BaiWangShan Forest Park; Beijing

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Southern Denmark


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Hyunsoonleella aestuarii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Montenegro

ncbi_isolation_source: Brine cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: Streptomyces seoulensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Japan

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Toho University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Beijing

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Medical University


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella seminalis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio parahaemolyticus S023

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus S023


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Harbin

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Canada: Richmond Hill

ncbi_isolation_source: Recreational; fresh water Kettle Lake

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Escherichia coli

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: uncultured Anaeromyxobacter sp.


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 12 days

ncbi_organism_name: Vibrionaceae bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: Lactiplantibacillus daoliensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Anaeroplasmataceae bacterium


ncbi_submitter: University of the Ryukyus


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: BfR L248

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_country: China: Shanghai City

ncbi_submitter: Yangzhou University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Isoalcanivorax beigongshangi

ncbi_submitter: Beijing Technology and Business University


ncbi_country: Sweden: Jonstorp

ncbi_isolation_source: gut

ncbi_organism_name: Bombilactobacillus mellis

ncbi_submitter: Uppsala university


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: deep mesotrophic lake

ncbi_organism_name: Limnohabitans sp. MMS-10A-192

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: SPRUCE 641

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 641

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Niabella sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Genoscope CEA


ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Sphingobium sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Butyricimonas virosa


ncbi_organism_name: Arsenophonus sp. NC-XBC3-MAG3

ncbi_submitter: Northwest A&F University


ncbi_organism_name: bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Firmicutes bacterium AM55-24TS

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AM55-24TS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacillus cereus group sp. BceL212

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL212


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-1116

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Gammaproteobacteria bacterium UBA4030

ncbi_submitter: University of Queensland


ncbi_organism_name: Aequorivita aquimaris


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM244Ai

ncbi_submitter: Washington University


ncbi_assembly_name: freshwater MAG --- A14_bin-2305

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Janthinobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Smithella sp.

ncbi_submitter: University of Iowa


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 125

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Poland

ncbi_isolation_source: blood

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: Canada: Pictou County; NS

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Germany

ncbi_isolation_source: Packed pork meat

ncbi_organism_name: Photobacterium carnosum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Modernising Medical Microbiology


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_isolation_source: gerbil stomach

ncbi_organism_name: Helicobacter pylori HP87P7

ncbi_submitter: MHH


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Antarctica: Jasper beach adjacent to Fildes Peninsula

ncbi_isolation_source: sediment

ncbi_organism_name: Amphritea opalescens

ncbi_submitter: Anhui University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Malaysia

ncbi_organism_name: Burkholderia pseudomallei

ncbi_strain_identifiers: VL

ncbi_submitter: University of Malaya


ncbi_country: Russia: Moscow

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp22 AA3

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp22 AA3

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: JPIAMR ARMIS


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Barnesiella intestinihominis YIT 11860

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Barnesiellaceae;g__Barnesiella;s__Barnesiella intestinihominis;x__Barnesiella intestinihominis YIT 11860


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1956

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Stockholm University


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Candidatus Ornithoclostridium faecavium

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Streptomyces goshikiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Northeast Forestry University


ncbi_organism_name: Oscillospiraceae bacterium 42-9

ncbi_submitter: Nanjing University


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01517

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01517


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Urinary catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nottingham Trent University


ncbi_country: China: Heilongjiang

ncbi_isolation_source: gut

ncbi_submitter: Harbin Medical University


ncbi_country: India: Shantiniketan; West Bengal

ncbi_isolation_source: stone monuments

ncbi_organism_name: Tolypothrix bouteillei VB521301

ncbi_submitter: Indian Institute Of Chemical biology


ncbi_isolation_source: organic spring mix

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: OR

ncbi_isolation_source: Ground Beef

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: Denmark

ncbi_strain_identifiers: Broiler parent117

ncbi_submitter: University of Copenhagen


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Pseudomonadota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: anus swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bradyrhizobium sp. TM233

ncbi_submitter: Tohoku univ.


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA: California; Eel River; Red Mountain Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_38_RDM_U_B

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Korea: seawater

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudophaeobacter flagellatus

ncbi_submitter: Korea Research Institute of Bioscience and biotechnologyy


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: University of Zurich


ncbi_country: China: Guangxi

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Steroidobacter agaridevorans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Shigella flexneri K-227


ncbi_country: India: Nagpur

ncbi_isolation_source: cow rumen

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: CSIR- National Environmental Engineering Research Institute


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6406

ncbi_submitter: University of the Basque Country


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. CBR-F

ncbi_strain_identifiers: CBR-F

ncbi_submitter: Naval Research Laboratory


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Bhabha Atomic Research Center


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Pseudoruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: Fujian Agriculture and Forestry University College


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Al-Nahrain University


ncbi_organism_name: Aeromonas caviae


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Patras


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Acidiferrobacter sp.


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Sanya people's hospital


ncbi_organism_name: Blautia obeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cypionkella sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3152

ncbi_submitter: Broad Institute


ncbi_organism_name: Sinorhizobium mexicanum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Rwanda: Huye

ncbi_organism_name: Apibacter muscae

ncbi_submitter: KU Leuven / VIB


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Sudan: Khartoum; Soba University Hospital

ncbi_submitter: Brighton and Sussex Medical School


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Rudaea sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Zurich


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: SciBear LLC


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Colorado State U


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2599185213 annotated assembly

ncbi_organism_name: Microbulbifer thermotolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Russia: Perm; Perm region

ncbi_isolation_source: Plantago major rhizosphere; soil; former landfill area

ncbi_organism_name: Rhodococcoides fascians

ncbi_strain_identifiers: IEGM 1122

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA

ncbi_isolation_source: chicken carcass rinse

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: CIRM-BIA 86

ncbi_submitter: Brigham Young University


ncbi_country: China: Hangzhou; Fuyang

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium sp. STN6

ncbi_submitter: Chinese Academy of Forestry


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Psychrobacillus lasiicapitis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: University of Bari "Aldo Moro"


ncbi_country: Viet Nam

ncbi_isolation_source: intestinal tract

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Institute of Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Providencia vermicola

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France

ncbi_isolation_source: wheat sourdough

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: LBAE K30


ncbi_country: Russia: North Caucasus

ncbi_organism_name: Sphaerotilus montanus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Netherlands: Nijmegen

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Boston College


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Fusobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Environment

ncbi_submitter: Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_country: United Kingdom: North West

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UK Health Security Agency


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: brain

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC058695

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_isolation_source: rhizosphere soil culture M44

ncbi_organism_name: Kocuria sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Nocardia sp. NPDC051756


ncbi_submitter: Paris Saclay University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Vienna

ncbi_isolation_source: wilkins-chalgren anaerobe media

ncbi_organism_name: Gordonibacter sp. RACS_AR68

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Colombia: Narino

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: Japan:Ruins of Nisshoen; Hiroshima City; Hiroshima

ncbi_organism_name: Actinoplanes sp. L3-i22

ncbi_submitter: Graduate School of Biomedical and Health Sciences, Hiroshima University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Solobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Streptomyces chodovensis sp. nov. genome

ncbi_organism_name: Streptomyces sp. AC2023

ncbi_submitter: INSTITUTE OF MICROBIOLOGY, ETH ZURICH


ncbi_country: China: Zhu cheng

ncbi_isolation_source: pharyngeal

ncbi_submitter: China agriculture university


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Spain: Iberian Pyrite Belt deep subsurface

ncbi_isolation_source: Rock core from 297 metres below the surface floor

ncbi_organism_name: Tessaracoccus lapidicaptus

ncbi_submitter: Centro Nacional de Biotecnología (CSIC)


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University College Cork


ncbi_country: Canada: Aylmer; Quebec

ncbi_isolation_source: soil suspension baited with corn roots

ncbi_organism_name: Pseudomonas aylmerensis

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Bee

ncbi_organism_name: Bombilactobacillus thymidiniphilus

ncbi_submitter: The University of Adelaide


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia: Melbourne

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


gtdb_type_species_of_genus: t

ncbi_organism_name: Granulibacter bethesdensis CGDNIH1

ncbi_submitter: Rocky Mountain Laboratories, National Institutes of Allergy and Infectious Disease, The National Institutes of Health


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Mesorhizobium erdmanii

ncbi_submitter: University of Otago


ncbi_country: Germany: Berlin

ncbi_isolation_source: vaginal

ncbi_submitter: FU berlin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Microcoleus sp. AR_TQ3_B6

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: bioreactor

ncbi_organism_name: Syntrophaceae bacterium UBA5828

ncbi_submitter: University of Queensland


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pseudocatenulatum;x__Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505


ncbi_country: Poland

ncbi_organism_name: Citrobacter sp. wls829

ncbi_submitter: NanKai universit


ncbi_country: China: Jiangsu

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: China

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands: Leiden

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Leiden University


ncbi_country: China: Wuxi

ncbi_isolation_source: fecal sample

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: Southwest University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: North Carolina State University


ncbi_country: Japan:Shizuoka; Higashi-izu; Arayu

ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Caldilinea sp.

ncbi_submitter: RIKEN-BRC


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Xiaoshi Island; Weihai

ncbi_isolation_source: coastal sediment sample

ncbi_organism_name: Cognatishimia sp. F0-27

ncbi_submitter: shandong university


ncbi_country: Cote d Ivoire

ncbi_isolation_source: cassava fermentation

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Brigham Young University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Enterobacter cloacae complex sp. 411F9

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 411F9


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: Hospital Sirio-Libanes


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: marine metagenome


ncbi_country: China: Shenzhen; Longgang

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Metamycoplasma hominis ATCC 27545

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Fusobacterium pseudoperiodonticum


ncbi_country: USA

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas sp. FSL W7-0098

ncbi_submitter: Cornell University


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridium cochlearium

ncbi_submitter: TEAGASC


ncbi_country: Yugoslavia

ncbi_isolation_source: tomato field

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University Claude Bernard Lyon 1


ncbi_organism_name: Actinobacteria bacterium IMCC26256

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: IMG-taxon 2599185289 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC51

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin95

ncbi_isolation_source: soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_strain_identifiers: KAP bin95

ncbi_submitter: Monash University


ncbi_isolate: chicken fecal

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: chicken fecal

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Burkina Faso:Nouna Health District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Psychrobacter aestuarii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: open drain run-off channel of a bore in the Great Artesian Basin

ncbi_organism_name: Thermaerobacter subterraneus DSM 13965

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Thermaerobacter;s__Thermaerobacter subterraneus;x__Thermaerobacter subterraneus DSM 13965


ncbi_organism_name: Roseovarius nubinhibens

ncbi_submitter: Tang lab


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinoscillum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Bacillus sp. EKM206B

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EKM206B


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: USA: Calhoun; Tennessee

ncbi_organism_name: Sphingobium sp. B2D3B

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Johnsonella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: University of Chicago


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_assembly_name: IMG-taxon 2681813551 annotated assembly

ncbi_organism_name: Chryseobacterium indoltheticum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_organism_name: Herbiconiux wuyangfengii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Quadram Institutte


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium afermentans

ncbi_strain_identifiers: ACRQQ

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Desulfovibrionales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_isolation_source: clinical

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Geothrix sp. SG164

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_organism_name: Bacillus sp. JJ664

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JJ664


ncbi_country: Colombia: Medellin

ncbi_isolation_source: Intracerebral material

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: human feces

ncbi_organism_name: Candidatus Segatella caccae

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Sphingobacteriaceae bacterium


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium 503

ncbi_submitter: Washington University


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Idiomarina sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Dialister sp.


ncbi_organism_name: Streptomyces sp. NPDC059011

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium GW2011_GWC1_41_20


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China: Wuhan

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Wuhan Kernel Bio-tech Co., Ltd


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. 2011EL-2287