ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_level: Contig

ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sutterella parvirubra

ncbi_submitter: AAFC


ncbi_assembly_level: Complete Genome

ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: Klebsiella sp. KB_Kp057

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient21 sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


gtdb_representative: t

ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Enterococcus sp. S183_ASV_20

ncbi_submitter: Washington University in St. Louis


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: cold seep

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Brevundimonas sp. UBA2497

ncbi_submitter: University of Queensland


ncbi_organism_name: Chitinophaga pinensis


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: bristly starbur

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: Sweden: Gothenburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Sphingomonadaceae bacterium


ncbi_assembly_level: Chromosome

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China

ncbi_isolation_source: 20 years wild ginseng rhizosphere soil

ncbi_organism_name: Variovorax jilinensis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: Rumen uncultured genome RUG10013

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter sp. LA-1

ncbi_submitter: Zhejiang ocean university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDB9P129P

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Paenibacillus taichungensis

ncbi_submitter: Plant Protection Research Institute Guangdong Academy of Agricultural Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Trichococcus sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-9385

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Cyanobacteria bacterium UBA1221

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA1221


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0243

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_isolation_source: wastewater

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Oklahoma State University


ncbi_country: Ireland

ncbi_isolation_source: fetus

ncbi_organism_name: Leptospira interrogans serovar Copenhageni

ncbi_submitter: University of Agriculture in Krakow


ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_country: China: Shandong

ncbi_isolation_source: water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_submitter: USUHS


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1296

ncbi_submitter: Broad Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Robiginitalea sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Filifactor sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces from Phil the wombat

ncbi_organism_name: Lachnospiraceae bacterium Phil5

ncbi_submitter: University of Queensland


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Chromobacterium vaccinii

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Streptomyces sp. PU_AKi4

ncbi_submitter: University of Kentucky, USA, and University of the Punjab, Pakistan


ncbi_country: United Kingdom: London

ncbi_isolation_source: Animal hide

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Public Health England


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Clostridium sp. SCN 57-10

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;x__unclassified Clostridium;s__Clostridium sp. SCN 57-10


ncbi_isolation_source: porpoise

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: China: Nanjing

ncbi_organism_name: Rhizorhabdus dicambivorans

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Hungary

ncbi_isolation_source: skin

ncbi_organism_name: Cutibacterium acnes FZ1/2/0

ncbi_submitter: BAYGEN


ncbi_organism_name: Chloroherpetonaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Kenya: Lwak

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_strain_identifiers: Vehlefans 2

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira kirschneri;x__Leptospira kirschneri serovar Mozdok;x__Leptospira kirschneri serovar Mozdok 1 str. Vehlefans 2


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Halobacteriovorax vibrionivorans

ncbi_refseq_category: reference genome

ncbi_submitter: Huaqiao University

ncbi_type_material_designation: assembly from type material


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of Queensland


ncbi_country: Russia: Khabarovsky kray

ncbi_isolation_source: Chernaya River

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: not available

ncbi_submitter: WTSI


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal ambient sediment

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: urine

ncbi_submitter: Charles University


ncbi_country: Denmark

ncbi_isolation_source: abscess

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University


ncbi_organism_name: Pasteurella sp. PK-2025

ncbi_submitter: University of Bern


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: Darmstadt

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Hunan Normal University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii AB_1766_8

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0462

ncbi_submitter: Broad Institute


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: Bronchial wash

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_country: Turkey: Ankara

ncbi_isolation_source: Abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_country: New Zealand: Canterbury

ncbi_isolation_source: cyanobacterial mat

ncbi_organism_name: Microcoleus sp. CAWBG556

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Pseudomonas sp. URIL14HWK12:I4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Shandong

ncbi_submitter: Shandong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Changchun

ncbi_isolation_source: knee joint

ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Jilin Agricultural University


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Trichlorobacter lovleyi

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Kingella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Streptococcus pyogenes ABC020046559

ncbi_submitter: Broad Institute


gtdb_type_species_of_genus: t

ncbi_country: Germany: Wilsdruff; Helbigsdorf

ncbi_organism_name: Breznakiella homolactica

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Chitinispirillia bacterium


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: Pacific Ocean

ncbi_isolation_source: surface seawater

ncbi_organism_name: Oleiagrimonas sp. C23AA

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Nevskiales bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: GenomeTrakr Project: Thakur Molecular Epidemiology Laboratory, NC State University


ncbi_isolate: AOP16_AQ2_surf _bin _2

ncbi_organism_name: Hafnia alvei

ncbi_strain_identifiers: AOP16_AQ2_surf _bin _2

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Tritonibacter scottomollicae

ncbi_submitter: Ocean University of China


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Selenomonas noxia

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: Uniformed Services University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- Ja_bin-3022

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Thailand

ncbi_isolation_source: fleur de sel

ncbi_organism_name: Proteobacteria bacterium 005FR1

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium 005FR1


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: uncultured Chromatiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A.C. (CIAD). Hermosillo, Sonora, Mexico.


ncbi_submitter: Fudan University


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: McGill University


ncbi_assembly_name: Rumen uncultured genome RUG12869

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_organism_name: Sideroxydans sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: blood

ncbi_organism_name: Brucella melitensis CNGB 1120

ncbi_strain_identifiers: CNGB 1120

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus sp. AM28-20

ncbi_submitter: BGI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: Prevotella veroralis


ncbi_country: Singapore

ncbi_isolation_source: Sputum

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Faculty of Pharmacy of the University of Porto


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Stockholm University


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Sanalona dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Switzerland: Solothurn

ncbi_isolation_source: urine

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Lactobacillus taiwanensis


ncbi_country: Oman

ncbi_isolation_source: Biological sample

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Pseudomonas syringae pv. theae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. theae


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pantoea sp. UBA7232

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_country: USA: Central Florida

ncbi_organism_name: Pantoea latae

ncbi_submitter: University of Central Florida


ncbi_country: Germany

ncbi_isolation_source: Gut

ncbi_strain_identifiers: Isolate-102 (HZI)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-102 (HZI)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Homo sapiens

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adjame


ncbi_country: USA: IL; Urbana

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. XY58

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 18:z4,z23:-


ncbi_organism_name: Pseudomonas sp.


ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_organism_name: Moellerella wisconsensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France: Certeil

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_country: Greece

ncbi_isolation_source: Greek Kasseri cheese

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: ACA-DC 179

ncbi_submitter: Agricultural University of Athens


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Swedish Defense Research Agancy


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WA

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Azonexus sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Aliivibrio salmonicida

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Switzerland

ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: uncultured Fusibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Eubacteriales Family XII. Incertae Sedis;g__Fusibacter;x__environmental samples;s__uncultured Fusibacter sp.


ncbi_organism_name: Streptococcus agalactiae GB00084

ncbi_submitter: The J. Craig Venter Institute


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB245a_518K17

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater effluent

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_assembly_name: freshwater MAG --- Ja2_bin-1788

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: broiler

ncbi_submitter: Universidade de Passo Fundo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_assembly_name: Rumen uncultured genome RUG10988

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: flower

ncbi_organism_name: Asaia bogorensis NBRC 16594

ncbi_submitter: Kinki University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Kluyvera sp. CHPC 1.2972

ncbi_submitter: China CDC


ncbi_country: USA

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Schlesneria sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: bioMerieux


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Sphaerochaeta sp. UBA4273

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Gansu

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Mahidol University


ncbi_isolate: CFX

ncbi_isolation_source: Artificial municipal wastewater

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: CFX

ncbi_submitter: Peking University


ncbi_country: USA: Minnesota

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Xiamen University


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Mesonia mobilis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: caecum

ncbi_organism_name: Gemmiger sp. An194

ncbi_submitter: Veterinary Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp. An194


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: uncultured Enteractinococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: Pacific Ocean

ncbi_isolation_source: South Pacific Ocean

ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Ghent University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_submitter: Zhejiang Ocean University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Proteobacteria bacterium UBA2133

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2133


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13554

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Facklamia languida

ncbi_submitter: EMG


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Saprospirales bacterium

ncbi_submitter: University of Calgary


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: HS

ncbi_submitter: ETH Zurich


ncbi_submitter: washington state university


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Cornell University


ncbi_assembly_name: Rumen uncultured genome RUG12353

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: goat cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: China: Shenzhen

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Southern University of Science and Technology


ncbi_country: Australia

ncbi_isolation_source: root nodule

ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium leguminosarum;x__Rhizobium leguminosarum bv. trifolii;x__Rhizobium leguminosarum bv. trifolii SRDI565


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Arctic Ocean: Gakkel Ridge; Loki s castle

ncbi_isolation_source: marine sediment core GS08_GC12; 126 cmbsf

ncbi_organism_name: Candidatus Anoxychlamydiales bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Candidatus Anoxychlamydiales;x__unclassified Candidatus Anoxychlamydiales;s__Candidatus Anoxychlamydiales bacterium


ncbi_country: USA: Ingham County; MI

ncbi_isolation_source: MSU2 Lake

ncbi_organism_name: Microcystis aeruginosa L211-101

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: Rumen uncultured genome RUG10519

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Candidatus Tectiglobus profundi

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: RIMG, Kochi University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Olsenella stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_country: Indian Ocean: Andaman Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Halomonas campaniensis

ncbi_submitter: Pondicherry University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Buryats

ncbi_isolation_source: dairy product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: UMR Vetagro sup / Anses


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Spirochaetaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Longyan

ncbi_isolation_source: Gold-copper mine soil

ncbi_organism_name: Mucilaginibacter rubeus

ncbi_submitter: Institute of Environmental Microbiology


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_submitter: Drexel


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus parasanguinis SK236

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDQ20D78P

ncbi_submitter: South China Agricultural University


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_country: USA

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Michigan, Ann Arbor


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Tsinghua University

ncbi_isolation_source: blood

ncbi_submitter: Tsinghua University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: NY

ncbi_isolation_source: produce field drag swab

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Salmonella sp. NW1249

ncbi_submitter: Sichuan University


ncbi_country: USA: Toombs Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Papua New Guinea

ncbi_organism_name: Orientia tsutsugamushi str. Karp

ncbi_strain_identifiers: Karp

ncbi_submitter: Center for Biologics Evaluation and Research Food and Drug Administration


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium gordonae

ncbi_submitter: JCVI


ncbi_isolation_source: human gut

ncbi_organism_name: Enterococcus caccae

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R305;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Haljarp

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Chengdu

ncbi_organism_name: Legionella pneumophila

ncbi_strain_identifiers: Sctan

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: Belgium

ncbi_isolation_source: Vitamin B2 feed additive

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Sciensano


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Campbelliibacteriota;s__Candidatus Campbellbacteria bacterium GW2011_GWC1_35_31


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Peptostreptococcus anaerobius


ncbi_country: Brazil

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Bacillus subtilis


ncbi_organism_name: Leptospira weilii str. LNT 1194

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira weilii;x__Leptospira weilii str. LNT 1194


ncbi_country: United Arab Emirates: Beach area; Dubai

ncbi_isolation_source: Beach area

ncbi_organism_name: Streptomyces sp. CB02613

ncbi_submitter: The scripps research institute


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Phormidium sp. GEM2.Bin31

ncbi_submitter: University of Calgary


ncbi_isolation_source: Caecum


ncbi_country: Sweden

ncbi_isolation_source: CSF


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sheep fecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: Ignatzschineria indica

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP18_A1_surf _bin _7

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP18_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Segatella copri


ncbi_organism_name: Candidatus Ratteibacteria bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Ratteibacteria;x__unclassified Candidatus Ratteibacteria;s__Candidatus Ratteibacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Hydrogenophilales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Roseibium sp. AS2

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_country: USA: Seattle

ncbi_isolation_source: Tissue Left Shoulder

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_country: USA

ncbi_isolation_source: shrimp paste

ncbi_organism_name: Imtechella halotolerans

ncbi_submitter: Zymo Research Corporation


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China

ncbi_organism_name: Shigella flexneri 2002142

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_country: China: Shenzhen

ncbi_organism_name: Paracoccus onchidii

ncbi_submitter: Shenzhen University


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Czech Republic: Ostrava

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter sp. ANC 3882

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Stellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Jiangnan University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Oleimmundimicrobium sp.

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Aquicultoria;o__Candidatus Subteraquimicrobiales;f__Candidatus Oleimmundimicrobiaceae;g__Candidatus Oleimmundimicrobium;x__unclassified Candidatus Oleimmundimicrobium;s__Candidatus Oleimmundimicrobium sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: Ganjang

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: food

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Salmonella sp. C3220

ncbi_submitter: Sichuan University


ncbi_isolation_source: feces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0111

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: France: Masseube

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas moraviensis

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: Denmark

ncbi_organism_name: Arcanobacterium phocae

ncbi_submitter: Helsinki University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: Flavobacterium glaciei

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA


ncbi_country: Thailand: Eastern Thailand

ncbi_isolation_source: 1 month-old fish sauce mash

ncbi_organism_name: Virgibacillus sp. SK37

ncbi_submitter: Suranaree University of Technology


ncbi_country: India: Arabian Sea

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Cereibacter changlensis

ncbi_strain_identifiers: SBBC

ncbi_submitter: Bose Institute


ncbi_country: China: Yan an

ncbi_isolation_source: fermentation bed material

ncbi_organism_name: Rhodococcus yananensis

ncbi_submitter: Yan'an university


ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: India

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Clostridium novyi

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: NCIMB 8140

ncbi_submitter: Agroscope


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: French Guiana

ncbi_isolation_source: Hydrocarbon polluted soil

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Streptomyces sp. FxanaC1


ncbi_organism_name: Brucella abortus bv. 5 str. B3196

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella abortus;x__Brucella abortus bv. 5;x__Brucella abortus bv. 5 str. B3196


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Francisella tularensis

ncbi_submitter: SRCAMB


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Spain: Santander

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: oil-polluted soil; oil-extracting enterprise

ncbi_organism_name: Rhodococcus qingshengii

ncbi_strain_identifiers: IEGM 766

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Canada: Calgary

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Iowa State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Zhejiang University


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bdellovibrionia bacterium

ncbi_submitter: Inha University


ncbi_country: USA

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Brenneria;s__Brenneria nigrifluens;x__Brenneria nigrifluens DSM 30175 = ATCC 13028


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Ethiopia: Amhara; South Wollo; Kombolcha

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Philippines

ncbi_isolation_source: Water of rice field

ncbi_organism_name: Sphingobium fuliginis ATCC 27551

ncbi_submitter: University of Hyderabad


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho university


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Blautia obeum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: SponGES


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Cellulophaga sp.

ncbi_submitter: Linnaeus University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Cyanobacteria bacterium TMED229

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium TMED229


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Flavobacterium sp. FlaQc-48

ncbi_submitter: Universite Laval


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Dorea longicatena


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0306

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Fannyhessea vaginae

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Russia: Chazhemto settlement; Tomsk oblast

ncbi_isolation_source: 2.8-km deep subsurface aquifer

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: University of Chicago


ncbi_country: Netherlands

ncbi_organism_name: Enterococcus faecium EnGen0032

ncbi_submitter: Broad Institute


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Coleofasciculus sp. FACHB-64

ncbi_submitter: South China Normal University


ncbi_country: Australia: Sydney

ncbi_isolation_source: cystic fibrosis patient

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: rumen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Inner Mongolia University of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: MD

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA4912

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4912


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: [Clostridium] scindens


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Shandong University


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-1111

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_country: USA: MS

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Transconjugant 22A

ncbi_submitter: Univ Mississippi Medical Center


ncbi_assembly_name: Rhizobiales bacterium Ga0077549

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Rhizobiales bacterium Ga0077549

ncbi_submitter: University of Glasgow


ncbi_country: South Korea: Seoul

ncbi_isolation_source: bile

ncbi_organism_name: Enterococcus sp. SMC-9

ncbi_submitter: Samsung Medical Center


ncbi_country: China: Henan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_isolation_source: rhizosphere soil culture M46

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: India

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College


ncbi_isolation_source: gut of vertebrate mammal

ncbi_organism_name: Lactobacillaceae bacterium UBA639


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium sp. Root73

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: McGill University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: Germany

ncbi_isolate: yes

ncbi_isolation_source: human

ncbi_organism_name: Borreliella burgdorferi

ncbi_strain_identifiers: PAli

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_isolation_source: Pickled cabbage

ncbi_organism_name: Lactiplantibacillus plantarum subsp. plantarum

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA

ncbi_organism_name: Pseudomonas savastanoi pv. glycinea

ncbi_strain_identifiers: ICMP 867

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi;x__Pseudomonas savastanoi pv. glycinea


ncbi_country: Belgium

ncbi_isolation_source: lambic beer

ncbi_organism_name: Acetobacter orientalis

ncbi_submitter: university of Ghent


ncbi_isolation_source: metagenome

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Queensland


ncbi_country: France: Limoges

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Ralstonia sp. 5_2_56FAA

ncbi_submitter: Broad Institute


ncbi_organism_name: Herbiconiux sp. A18JL235

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.331 MAG

ncbi_isolate: bin.331 MAG

ncbi_isolation_source: North Atlantic

ncbi_organism_name: Marinobacterium sp. xm-d-530

ncbi_strain_identifiers: bin.331 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Minnesota


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University (LAU), Byblos campus


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Finegoldia magna

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: KCKM 0245

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0629

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: Sichuan

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Calf

ncbi_submitter: Federal Institute for Risk Assessment


ncbi_isolation_source: human gut

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: sheep gut metagenome


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_submitter: General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: South Korea

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Pseudomonas aestuarii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology, KRIBB


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Friedrich Schiller University Jena


ncbi_organism_name: Peptostreptococcus anaerobius

ncbi_submitter: Icahn School of Medicine


ncbi_country: New Zealand

ncbi_isolation_source: Environment - Horticulture Equipment

ncbi_submitter: University of Surrey


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: uncultured Paludibacter sp.


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Bradymonadales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Bradymonadales;x__environmental samples;s__uncultured Bradymonadales bacterium


ncbi_organism_name: uncultured Paludibacteraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_assembly_name: Kle_pne IVRI_FBI_619

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Dokdonia donghaensis

ncbi_submitter: University of East Anglia


ncbi_country: USA: New Jersey

ncbi_organism_name: Metamycoplasma hominis

ncbi_strain_identifiers: Sprott

ncbi_submitter: University of Missouri - Columbia


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: France

ncbi_isolation_source: bacterial strain isolated from sardine

ncbi_organism_name: Morganella morganii

ncbi_submitter: Ifremer


ncbi_isolation_source: forest soil; soft coal slag

ncbi_organism_name: Beijerinckiaceae bacterium RH CH11

ncbi_submitter: FRIEDRICH SCHILLER UNIVERSITY JENA


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC01

ncbi_submitter: JCVI


ncbi_assembly_name: Burkholderia sp. LMG 29321

ncbi_isolation_source: water

ncbi_organism_name: Caballeronia calidae

ncbi_submitter: LM-UGent


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Norway: Viken

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Romania: Bucharest

ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: India

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Egypt

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Nankai University


ncbi_organism_name: uncultured Alloprevotella sp.

ncbi_submitter: EMG


ncbi_country: Australia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: China

ncbi_isolation_source: marine sediments

ncbi_organism_name: Robiginitalea aurantiaca

ncbi_submitter: Shandong University at Weihai


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Gallicola sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: adult feces

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Bioprox


ncbi_country: South Korea

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Yeungnam University


ncbi_submitter: University of Bath


ncbi_organism_name: Acutalibacter muris


ncbi_country: Czechoslovakia

ncbi_organism_name: Bacillus thuringiensis serovar alesti

ncbi_strain_identifiers: BGSC 4C1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar alesti


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: Russia: Tambov region

ncbi_isolation_source: liver

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SRCAMB


ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: QinHuandao

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Breoghania sp. L-A4

ncbi_submitter: Marine Ecology Center


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Thioploca sp.

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Corynebacterium mustelae


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: Hong Kong: Chek Chau

ncbi_organism_name: Ruegeria sp. HKCCD7319

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Sanalona dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Sandiego


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UC Davis


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acidaminobacteraceae bacterium


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Gemmobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Wuhan

ncbi_isolation_source: river water

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: The First Affiliated Hospital of Medical School


ncbi_country: France

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 773

ncbi_submitter: Agroscope


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Marinosulfonomonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Enterobacter sp. BIDMC92

ncbi_submitter: Broad Institute


ncbi_country: Brazil

ncbi_isolation_source: oral cavity; infant (10 months of age)

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: State University of Campinas


ncbi_organism_name: Pseudomonas palleroniana

ncbi_submitter: Fujian Key Laboratory of Plant Virology, Institute of Plant Virology


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Sydney

ncbi_isolation_source: clinical sample

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Oxford


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Bielefeld University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120722


ncbi_isolation_source: stool

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: AIIMS, New Delhi


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_country: Czech Republic

ncbi_isolation_source: midguts

ncbi_organism_name: Entomospira culicis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus WMCA6040

ncbi_submitter: Broad Institute


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Ardenticatenales bacterium

ncbi_submitter: GNS Science


ncbi_country: Costa Rica

ncbi_organism_name: Leptospira santarosai

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Queensland


ncbi_country: USA: Texas

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Texas A&M University


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Egypt: Tanta

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agriculture University