ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Massachusetts

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: dental plaque

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


gtdb_representative: f

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Japan

ncbi_organism_name: Prescottella equi

ncbi_submitter: Newcastle University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_level: Chromosome

ncbi_country: Sudan

ncbi_genome_representation: partial

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: University of Khartoum


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_isolation_source: stool

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Lachnospiraceae bacterium 1_1_57FAA

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clavibacter sepedonicus

ncbi_strain_identifiers: GBBC 276

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. microtus;x__Yersinia pestis subsp. microtus bv. Caucasica


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium hibisci

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: CCTCC AB 2016180

ncbi_submitter: Xiamen University

ncbi_type_material_designation: assembly from type material


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Chile: Temuco

ncbi_isolation_source: skin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pyogenes ABC020010041


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Candidatus Segetimicrobium genomatis

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Segetimicrobiaceae;g__Candidatus Segetimicrobium;s__Candidatus Segetimicrobium genomatis


ncbi_organism_name: Aliidongia sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oceanobacillus oncorhynchi subsp. incaldanensis

ncbi_submitter: Gyeongsang National University Hospital


ncbi_assembly_name: IMG-taxon 2528768221 annotated assembly

ncbi_organism_name: Cellulosimicrobium cellulans J1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: intestinal content

ncbi_submitter: ChinaCDC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Shanghai Ocean University


gtdb_type_species_of_genus: t

ncbi_organism_name: Moorena producens 3L

ncbi_submitter: UCSD


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli KTE130

ncbi_submitter: Broad Institute


ncbi_submitter: Toho University


ncbi_organism_name: Steroidobacteraceae bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: Dental Plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Madurai kamaraj university


ncbi_country: South Korea: Busan

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: KAIST (Korea Advanced Institute of Science and Technology)


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia sp. BIOML-A31

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Verrucomicrobia bacterium UBA1859

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1859


ncbi_country: China: Shenzhen

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: BGI


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC087849

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_submitter: Global Health Research Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: JiLin Agricultural Scuence and Technolog


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Chamaesiphon sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:793

ncbi_submitter: DTU


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Aeromonas veronii bv. sobria

ncbi_submitter: University of Hawaii Graf Lab


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: NABI 532

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_isolation_source: Top soil

ncbi_organism_name: Paraburkholderia nemoris

ncbi_submitter: GHENT UNIVERSITY


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Groningen


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Brucella sp. NBRC 12952

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: China: Tengchong

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pantoea sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Beijing

ncbi_organism_name: Segatella copri

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Malaysia: Sabah

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Borneo Medical and Health Research Centre


ncbi_country: USA: Moline; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: human feces metagenome


ncbi_country: Chile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: Faeces


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F77960

ncbi_submitter: Broad Institute


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Hoeflea sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M44BS1

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Finegoldia magna

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangxi

ncbi_isolation_source: soil; pig

ncbi_submitter: Guangxi University


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Carlsbad Caverns; New Mexico

ncbi_organism_name: Streptomyces buecherae

ncbi_submitter: University of New Mexico


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Tanzania

ncbi_isolation_source: nasal swabs from HIV infected patient

ncbi_submitter: University of Bergen


ncbi_isolation_source: Ditch water

ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: CCUG 3354

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Florida


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Bacillus sp. MHSD_37

ncbi_submitter: University of Johannesburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MHSD_37


ncbi_country: Germany

ncbi_isolation_source: barn boot swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Zhejiang; Hangzhou


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Spain

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Malaysia

ncbi_isolation_source: sputum sample from patient with lung infection

ncbi_organism_name: Mycobacteroides abscessus M148

ncbi_submitter: Universiti Malaya, Kuala Lumpur


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Harvard University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Hengyang

ncbi_isolation_source: wound

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan: Tsukuba

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus gilvus

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Selenomonas noxia F0398

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: paddy soil

ncbi_organism_name: Anaeromyxobacter sp. SG17

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Zoonosis Science Center


ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: NHGRI/NIH


ncbi_assembly_name: freshwater MAG --- Loc090907-8-6m_bin-084

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Bangladesh

ncbi_isolation_source: Aman rice field soil

ncbi_organism_name: Morganella sp. HSTU-ASny43

ncbi_submitter: Hajee Mohammad Danesh Science and Technology University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. HSTU-ASny43


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWA2_40_143


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Corynebacterium marquesiae

ncbi_submitter: University of York


ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: UIUC


ncbi_organism_name: Sphingobacterium sp. Lzh-3

ncbi_submitter: Dezhou University


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus sp. DIV2386

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Vreelandella malpeensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_isolation_source: DHS Bioreactor

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Water Quality Control Lab, Division of Environmental Engineering, Faculty of Engineering, Hokkaido University


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: Cantabria; Altamira Cave

ncbi_isolation_source: Cave wall

ncbi_organism_name: Paenibacillus sp. A3M_27_13

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_isolation_source: feces

ncbi_organism_name: Sphingomonas melonis

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: IMG-taxon 2687453680 annotated assembly

ncbi_organism_name: Bacillus sp. OK048

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OK048


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Mesorhizobium sp. M0923

ncbi_submitter: Washington State University


ncbi_country: Japan: Nagano; Suwa

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_assembly_name: IMG-taxon 2698536813 annotated assembly

ncbi_organism_name: Vreelandella aquamarina

ncbi_strain_identifiers: ACAM 246

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: University of Georgia


ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: class I chancroid

ncbi_organism_name: [Haemophilus] ducreyi

ncbi_submitter: Indiana University School of Medicine


ncbi_country: Spain: Amadorio reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Cyanobium sp. AMD-g

ncbi_strain_identifiers: AMD-g

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Xanthomonas sp. JAI131

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Faucicola osloensis

ncbi_submitter: China CDC


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Tanzania: Dar es Salaam

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bergen


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China: Hong Kong

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii AB1H8

ncbi_submitter: The University of Hong Kong


ncbi_country: Thailand: Nhong Khai

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: seawater

ncbi_organism_name: Rhodobacterales bacterium HKCCA1287

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Schaalia turicensis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: cold seep

ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Lactobacillaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolate: Blautia argi canine HQ MAG

ncbi_isolation_source: Canine feces

ncbi_organism_name: Blautia argi

ncbi_strain_identifiers: Blautia argi canine HQ MAG

ncbi_submitter: Vetgenomics, S.L


ncbi_country: Austria

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: United Kingdom


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Nitrosospira sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolate: AOP29_E1_surf _bin _9

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: AOP29_E1_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Ghent University


ncbi_country: Japan

ncbi_genome_category: derived from single cell

ncbi_isolation_source: This BioSample is a composited single-cell amplified genome (CoSAG) obtained by integrating the following multiple MDA SAG BioSamples: SAMN22813822; SAMN24966442; SAMN23498489; SAMN23498490; SAMN23498491; SAMN24966443

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: bitBiome, Inc.


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Finland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_strain_identifiers: CIRM BIA 230

ncbi_submitter: Agroscope


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Brown University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: National Institute Agricultural Sciences, RDA


ncbi_organism_name: Kocuria marina

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Gulf of Mexico Research Consortium (CIGoM)


ncbi_submitter: University of Pretoria


ncbi_isolation_source: blood

ncbi_submitter: Princeton University


ncbi_isolation_source: SWAB FROM SKIN TISSUE

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romagna-i.z.s.l.e.r.


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori GAM265BSii

ncbi_submitter: Washington University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_organism_name: Streptococcus suis 2726

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_isolation_source: Homo sapiens

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adjame


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus cohnii

ncbi_strain_identifiers: acroc

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Balearic Islands


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Turicimonas muris


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Japan: Inland Sea (Setonaikai); Ako City; Hyogo Prefecture

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio japonicus

ncbi_submitter: Southern Oregon University Biology Department


ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-396

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: China: Hubei

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Flavobacterium sp. HBTb2-11-1

ncbi_submitter: Beijing Academy of Agriculture and Forestry Science


ncbi_organism_name: Candidatus Blautia avicola

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Universidad Autonoma del Estado de Mexico


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: INTECH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Vibrio owensii

ncbi_submitter: Shantou University


ncbi_organism_name: Erythrobacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG13924

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_organism_name: Firmicutes bacterium HGW-Firmicutes-8

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium HGW-Firmicutes-8


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Fusobacterium vincentii

ncbi_submitter: Forsyth Institute


ncbi_submitter: Laval University


ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Priestia filamentosa

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 930

ncbi_submitter: USDA-ARS


ncbi_country: Netherlands

ncbi_isolation_source: Sputum sample of patient with COPD in Holland

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_assembly_name: freshwater MAG --- Erken-D10_bin-0076

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: EMG


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_strain_identifiers: COPD W2b

ncbi_submitter: Chengdu University


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA: Houston

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: CHU Montpellier


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: coastal mangrove wetland rhizosphere sample

ncbi_organism_name: Rhodobacterales bacterium HKCCE2091

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Candidatus Nanogingivalaceae bacterium

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanogingivales;f__Candidatus Nanogingivalaceae;x__unclassified Candidatus Nanogingivalaceae;s__Candidatus Nanogingivalaceae bacterium


ncbi_organism_name: Parasutterella excrementihominis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: California; Modesto

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Tsinghua University


ncbi_country: United Kingdom

ncbi_isolation_source: Rectal swab

ncbi_submitter: Bournemouth University


ncbi_organism_name: uncultured Spirochaetia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Slovakia: Ruzomberok

ncbi_isolation_source: urine

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: Spain: Mallorca

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: University of Balearic Islands


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: Endobronchial tube

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Reichenbachiella sp.

ncbi_submitter: University of Southern California


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: The village Lesozavodsky; Oleny Island; Kovda Bay; Kandalaksha district; Murmansk region

ncbi_isolation_source: lake Bolshye Khruslomeny; water chemocline zone

ncbi_organism_name: Chlorobium phaeovibrioides

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Pseudanabaena mucicola FACHB-723

ncbi_submitter: South China Normal University


ncbi_organism_name: Pseudomonas sp. NCHU5232

ncbi_submitter: Academia Sinica


ncbi_submitter: Instituto Nacional de Salud Publica

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University College Cork


ncbi_country: South Korea

ncbi_isolation_source: environment

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Korea University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Veillonella caviae

ncbi_submitter: AAFC


ncbi_organism_name: Franconibacter daqui

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: plant

ncbi_organism_name: Rhizobium sp. GN54

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_assembly_name: IMG-taxon 2617270787 annotated assembly

ncbi_organism_name: Vreelandella arcis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Bacillus cereus group sp. BceL058

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL058


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thioalkalivibrio sp. ALE17

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China:Tianjin;Affiliated Hospital of Nankai University

ncbi_isolation_source: burn wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nankai University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acidovorax sp. DW039

ncbi_submitter: University of Hyogo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Moraxella catarrhalis 103P14B1

ncbi_submitter: Center for Genomic Sciences


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


ncbi_organism_name: Polaribacter marinaquae

ncbi_submitter: Cong Sun Research Group


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Ardenticatena sp.

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: MAMI


ncbi_organism_name: Roseburia faecis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Nanjing university


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-759

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. wkB308

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: metagenome

ncbi_organism_name: Faecalibacterium sp. An121

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Escherichia coli E1520

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus hamazuiensis

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_isolation_source: environment

ncbi_organism_name: Rhodoferax saidenbachensis

ncbi_submitter: Korea University


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Ghiorsea sp.

ncbi_submitter: University of Bergen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;o__Mariprofundales;x__Mariprofundales incertae sedis;g__Ghiorsea;x__unclassified Ghiorsea;s__Ghiorsea sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Chicken meat

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Pseudomonas aeruginosa 3578


ncbi_isolation_source: swine facility

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 946

ncbi_submitter: USDA-ARS


ncbi_country: USA:Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: Kenya: Laikipia

ncbi_isolation_source: Camel

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Streptomyces sp. NRRL F-5123

ncbi_strain_identifiers: NRRL F-5123

ncbi_submitter: University of Illinois


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Yangzhou University


ncbi_country: Antarctica: Peninsula

ncbi_isolation_source: marine sediments

ncbi_organism_name: Arthrobacter sp. 7749

ncbi_submitter: USP


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Ruthenibacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy

ncbi_isolation_source: greenhouse maintained

ncbi_organism_name: Milkweed yellows phytoplasma str. MW1

ncbi_submitter: Università di Udine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrIII (X-disease group);s__Milkweed yellows phytoplasma;x__Milkweed yellows phytoplasma str. MW1


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: soil

ncbi_organism_name: Chryseobacterium daecheongense

ncbi_submitter: Shandong First Medical University & Shandong Academy of Medical Sciences


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_strain_identifiers: ICE 41

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Beihang University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira terpstrae;x__Leptospira terpstrae serovar Hualin;x__Leptospira terpstrae serovar Hualin str. LT 11-33 = ATCC 700639


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: BAL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium GW2011_GWC2_44_18


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Aerococcus viridans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Denmark: Odense

ncbi_isolation_source: Blood

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Rhizobiales bacterium TMED94

ncbi_submitter: University of Southern California


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Holdemanella biformis

ncbi_submitter: University of California, Berkeley


ncbi_submitter: Fudan University


ncbi_country: Italy: Lecco

ncbi_isolation_source: bronchoaspirate

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Wayne State University


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Japan:Okinawa; Iriomote Island

ncbi_isolation_source: Soil

ncbi_organism_name: Nonomuraea sp. TT08I-71

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: dental biofilm

ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: Health Sciences University of Hokkaido


ncbi_country: Greece

ncbi_isolation_source: biological sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, University of Thessaly


ncbi_country: USA: Chicago

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: Australia: Newcastle

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: AZ

ncbi_submitter: NCTR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Rhizobium rhizophilum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Florida

ncbi_isolation_source: uterus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Colorado

ncbi_isolation_source: Rifle acetate amendment columns

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium S15B-MN24 RAAC_196


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Trueperella sp. HMSC08B05

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Australia: Adelaide; Flinders University

ncbi_organism_name: Pseudonocardia eucalypti

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: France

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes senegalensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: US Food and Drug Administration


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfurimicrobium sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_organism_name: Klebsiella sp. CN_Kp113

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Brevibacterium sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Acinetobacter ursingii


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Universidad Autonoma de Queretaro


ncbi_organism_name: Marinobacterium stanieri

ncbi_submitter: Ocean University of China


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Univeristy of South Australia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Sediminicola sp.


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11097

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of California Davis


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EBI


ncbi_submitter: University of Malaya


ncbi_country: Austria: Lake Mondsee

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter asymbioticus

ncbi_submitter: University of Innsbruck


ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Linares

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Oxford


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Mycobacterium sp. HOS82

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Greece: Western Macedonia

ncbi_isolation_source: artisanal Greek Kefalograviera cheese

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Duodenibacillus sp.


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Ministry of Agriculture & Rural Development


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Michigan Department of Health and Human Services

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA: CA

ncbi_organism_name: Campylobacter coli 1961

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: water kefir

ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: Texas

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf33

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Antarctica: Mitchell Peninsula

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacter inghamiae

ncbi_submitter: University of New South Wales

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Dormiibacter;s__Candidatus Dormiibacter inghamiae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__Candidatus Dormiibacter;s__Candidatus Dormiibacter inghamiae


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Russia: North Caucasus region

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_country: Japan: Tokyo

ncbi_isolation_source: tidal and seawater pools located at sewage sludge disposal sites

ncbi_organism_name: Rhodovulum strictum

ncbi_submitter: Bellevue University


ncbi_country: Kazakhstan: Nur-Sultan

ncbi_isolation_source: purulent sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Candidatus Phocaeicola faecigallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Aneurinibacillus migulanus

ncbi_strain_identifiers: nagano

ncbi_submitter: University of Neuchatel


ncbi_country: Italy

ncbi_isolation_source: Silage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: glacier

ncbi_organism_name: Nocardioides glacieisoli

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Kocuria sp. CPCC 104605

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Kocuria;x__unclassified Kocuria;s__Kocuria sp. CPCC 104605


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: France

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Human

ncbi_organism_name: Mycobacterium riyadhense

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter bugandensis


ncbi_country: USA: Massachusetts

ncbi_organism_name: Bordetella bronchiseptica 00-P-2730

ncbi_submitter: JCVI


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Leptolyngbya sp. FACHB-261

ncbi_submitter: South China Normal University


ncbi_country: Spain

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus C3865

ncbi_submitter: Broad Institute


ncbi_country: USA: GA

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 38:[k]:-


ncbi_country: China: Zijin gold and copper mine

ncbi_isolation_source: mining soil

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Institute of Environmental Microbiology


ncbi_country: India: Vellore

ncbi_submitter: Christian Medical College


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Veillonella ratti

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: United Kingdom: West Midlands

ncbi_isolation_source: Bovine aborted fetus

ncbi_organism_name: Campylobacter fetus subsp. venerealis

ncbi_submitter: Faculdade de Medicina Veterinaria, Universidade de Lisboa


ncbi_country: Austria: Eugendorf

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Rariglobus hedericola

ncbi_submitter: University of Innsbruck


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudomonadaceae bacterium UBA7304

ncbi_submitter: University of Queensland


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Utah

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_isolate: root of Talipariti tiliaceum

ncbi_organism_name: Streptomyces griseoincarnatus

ncbi_strain_identifiers: bgisy062;root of Talipariti tiliaceum

ncbi_submitter: BGI Research


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Uppsala University


ncbi_isolate: AOP31_C2_surf _bin _13

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP31_C2_surf _bin _13

ncbi_submitter: Genoscope


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Cetobacterium somerae

ncbi_submitter: USDA ARS


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_organism_name: Thermacetogeniaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Bradyrhizobium sp. A5

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_assembly_name: freshwater MAG --- Umea3p1_bin-0932

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12100

ncbi_submitter: South China Agricultural University


ncbi_country: Japan: Chubu

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Fayetteville; Arkansas

ncbi_organism_name: Escherichia coli

ncbi_submitter: Iowa State University


ncbi_country: Chile

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Parasporobacterium sp.


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Negativicutes bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Yunnan; Jiaozi Mountain

ncbi_organism_name: Chryseobacterium luquanense

ncbi_submitter: Kunming University


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_isolation_source: Hospital General de Alicante (Alicante)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_country: Ukraine: Dnepropetrovsk region; Dnieper River

ncbi_isolation_source: water

ncbi_organism_name: Rhodococcus rhodochrous

ncbi_strain_identifiers: IEGM 107

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: BPTTk

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Anaerohalosphaeraceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: China: Guiyu; Shantou

ncbi_isolation_source: bioaerosols from E-waste industrial zone

ncbi_organism_name: Microcella alkalica

ncbi_submitter: Southern Medical University


ncbi_country: Brazil

ncbi_isolation_source: Raw pork sausage

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: IL

ncbi_isolation_source: Sodium Caseinate

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: ileum

ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: University of Minnesota


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Bacteroidales bacterium UBA7650

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA7650


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Peptostreptococcus porci

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: Zhangzhou

ncbi_organism_name: Sulfurovum zhangzhouensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 23466;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sandarakinorhabdus limnophila

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Maanshan Magnetite Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_isolate: AOP1_H1_surf _bin _27

ncbi_organism_name: Micrococcaceae bacterium

ncbi_strain_identifiers: AOP1_H1_surf _bin _27

ncbi_submitter: Genoscope


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfomicrobium sp.

ncbi_submitter: University of Calgary


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: hot spring

ncbi_organism_name: Bacillus sp. HSf4

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of PR China.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. HSf4


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1418

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Canada: High River

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Clostridioides difficile E7

ncbi_submitter: LPBA


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia

ncbi_isolation_source: soil

ncbi_organism_name: Williamsia sp. 1138

ncbi_submitter: University of Tasmania


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinomadura sp. NPDC048021

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood culture

ncbi_organism_name: Eggerthella sinensis

ncbi_submitter: UCSF


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Hemicentrotus pulcherrimus

ncbi_organism_name: Vibrio splendidus

ncbi_strain_identifiers: CECT 8714

ncbi_submitter: UVEG


ncbi_organism_name: uncultured Methylocystaceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of central Florida


ncbi_country: Canada: Vancouver

ncbi_isolation_source: maternal vaginal swab fluid of a 48 year-old woman on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Mesorhizobium australicum

ncbi_submitter: Washington State University


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_assembly_name: Rumen uncultured genome RUG13989

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Quadram Institutte


ncbi_organism_name: Klebsiella sp. 95941

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Parvibaculum sp.

ncbi_submitter: European Institute of the Sea (IUEM) - France


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: South Korea

ncbi_isolation_source: Sihwaho Lake

ncbi_organism_name: Flavobacterium jumunjinense

ncbi_submitter: Seoul National University


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum piscium

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptomyces sp. KHY 26

ncbi_strain_identifiers: KHY 26

ncbi_submitter: Council of Agriculture Kaohsiung District Agricultural Improvement Station


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: AGES


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Hymenobacter rubripertinctus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey