ncbi_isolation_source: metagenome

ncbi_organism_name: Streptococcus sanguinis


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


gtdb_representative: t

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-373-03_S3_C1

ncbi_submitter: IGS


ncbi_assembly_level: Scaffold

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: USA: Cambridge; MA

ncbi_submitter: MIT


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kingella denitrificans

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: plant material

ncbi_organism_name: Pectobacterium parvum

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_submitter: WRAIR-Africa


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_submitter: Obihiro University of Agriculture and Veterinary Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: University of Waterloo


ncbi_country: Greece: Athens

ncbi_isolation_source: stool samples

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Spain: Santa pola

ncbi_isolation_source: banquettes

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of Alicante


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: France: Normandy

ncbi_isolation_source: ocular

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: LABEO


ncbi_assembly_name: Rumen uncultured genome RUG10730

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: New Hampshire

ncbi_isolation_source: transcending colon brush

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of New Hampshire


ncbi_country: Germany

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Medical University of Gdansk

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: USA: BIFSCo Region 8

ncbi_isolation_source: ground beef

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1929


ncbi_organism_name: Sphingomonas sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_country: Thailand

ncbi_isolation_source: rhizosphere soil from rice plant

ncbi_organism_name: Streptomyces rhizoryzae

ncbi_refseq_category: reference genome

ncbi_submitter: Kasetsart University

ncbi_type_material_designation: assembly from type material


ncbi_country: Canada: Guelph

ncbi_isolation_source: Dry seeds

ncbi_organism_name: Bacillus sp. EKM203B

ncbi_submitter: University of Guelph

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. EKM203B


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: freshwater MAG --- Erken-D3_bin-0010

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Roseiflexaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aeromonas bivalvium

ncbi_strain_identifiers: CECT 7113

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: France

ncbi_isolation_source: whey (from farmer goat cheese)

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: CIRM-BIA 1146

ncbi_submitter: Brigham Young University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;s__Candidatus Enterousia intestinigallinarum


ncbi_country: Russia: Chelyabinsk region; Ozersk

ncbi_isolation_source: Groundwater sampled from observation well near surface repository of liquid radioactive waste

ncbi_organism_name: Shinella sp. JR1-6

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Rectinemataceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__environmental samples;s__uncultured Candidatus Cryptobacteroides sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Dashan Tin-Zinc Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Candidatus Poriferisodalis sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Candidatus Poriferisodalaceae;g__Candidatus Poriferisodalis;x__unclassified Candidatus Poriferisodalis;s__Candidatus Poriferisodalis sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


gtdb_type_species_of_genus: t

ncbi_isolation_source: salt mine

ncbi_organism_name: Marivibrio halodurans

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Exiguobacterium profundum

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium profundum


ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Helicobacter magdeburgensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Chicago


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: golden sea squirt (Halocynthia aurantium) was collected from the East Sea at Yangyang

ncbi_organism_name: Ascidiaceihabitans donghaensis

ncbi_strain_identifiers: CECT 8599

ncbi_submitter: UVEG


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: Grapefruit juice

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_country: Canada: Quebec City

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: China Jiliang University


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_country: Germany

ncbi_isolation_source: wound swab

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_submitter: Shanghai Customs


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Anatum

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Peru

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Medical Microbiology, Maastricht University Medical Center


ncbi_country: China: Jiangsu

ncbi_isolation_source: seawater from white shrimp (Litopenaeus vannamei) tank

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: Viet Nam: Trai cau district; Thai Nguyen province

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. BPTC-684

ncbi_submitter: Thai Nguyen University of Agriculture and Forestry


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_isolation_source: not provided

ncbi_organism_name: Porphyromonadaceae bacterium


ncbi_country: France

ncbi_organism_name: Clostridium tetani

ncbi_strain_identifiers: A

ncbi_submitter: Aarhus University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus sp. UMB1203

ncbi_submitter: Loyola University Chicago


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: USA: Florida

ncbi_isolation_source: stool from male and female vole

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Florida State University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Calothrix sp. CSU_2_0

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: CCUG 7969

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Arenibacter sp.


ncbi_submitter: Centers for Disease Control & Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen;x__Salmonella enterica subsp. enterica serovar Muenchen str. 2009K-0951


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Drancourtella sp.


ncbi_country: USA: Minnesota

ncbi_isolation_source: Freshwater Pond

ncbi_organism_name: Cellvibrio sp. PSBB006

ncbi_submitter: University of Minnesota


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Patescibacteria group bacterium UBA1554

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA1554


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Sulfurospirillum sp.

ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_organism_name: Fusobacterium animalis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_isolation_source: air

ncbi_organism_name: Pedobacter sp. Leaf132

ncbi_submitter: ETH ZURICH


ncbi_submitter: Jiaxing Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 9,12:g,m:-


ncbi_country: USA

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_isolation_source: Abdominal collection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: National Institute for Public Health and the Environment


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Brevibacillus parabrevis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-2462

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_AD_3

ncbi_organism_name: Ilyomonas sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_country: China: Hangzhou

ncbi_isolation_source: manure

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_country: USA: MO

ncbi_isolation_source: root

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Oregon State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Belgium

ncbi_isolation_source: Pond sample 1

ncbi_organism_name: Clostridium sp. VAP23

ncbi_submitter: KULeuven


ncbi_country: Russia

ncbi_isolation_source: rubber production plant territory

ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: IBPM RAS


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Wooster; Ohio

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: The Ohio State University


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: University of Lethbridge


ncbi_country: Thailand

ncbi_organism_name: Amycolatopsis suaedae

ncbi_submitter: Kasetsart University


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: root from Grassland

ncbi_organism_name: Pseudomonas sp. GL-RE-20

ncbi_submitter: Rothamsted Research


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_country: Ghana

ncbi_isolation_source: fish

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_submitter: Emory Rollins School of Public Health


ncbi_submitter: National Medicines Institute


ncbi_country: Azerbaijan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: China: Shenzhen

ncbi_organism_name: Blautia sp. AM46-3MH

ncbi_submitter: BGI


ncbi_country: China: Jilin

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Anaerotignum sp.


ncbi_organism_name: Terribacillus saccharophilus

ncbi_submitter: Nankai University


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA1575

ncbi_submitter: University of Queensland


ncbi_organism_name: Acutalibacter muris

ncbi_submitter: EMG


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: leaves

ncbi_organism_name: Methylobacterium sp. WL9

ncbi_submitter: Aarhus University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: GNS Science


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Hyphomonadaceae bacterium UBA1942


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-670-F22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Arcobacter nitrofigilis

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: Canada: North Alberta

ncbi_isolation_source: Suncor tailing pond sample

ncbi_organism_name: Caldiserica bacterium UBA4770

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__unclassified Caldisericota;s__Caldiserica bacterium UBA4770


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: feces

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: University of Sao Paulo - Institute of Chemistry


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_submitter: Ausgem


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: University of Chicago


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Japan

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Department of Life Science & Technology Faculty of Chemistry, Materials and Biotechnology Kansai University


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_country: Brazil:Sao Paulo; Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Netherlands

ncbi_organism_name: Actinomyces succiniciruminis

ncbi_submitter: WUR


ncbi_assembly_name: IMG-taxon 2687453810 annotated assembly

ncbi_organism_name: Streptomyces sp. TLI_105

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Deinococcaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Lysinibacillus fusiformis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ISMETT ST101 cl8

ncbi_submitter: ISMETT


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Slagelse

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: China

ncbi_isolation_source: stem

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Guangxi University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: ACD

ncbi_isolation_source: water

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: CORNELL UNIVERSITY


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Minnesota


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Psychrobacter namhaensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Treponema sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_country: Brazil: Fortaleza


ncbi_organism_name: Priestia sp. 40

ncbi_submitter: Shandong University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Serratia sp. 22330

ncbi_submitter: Yantai University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. 22330


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Laboratorios veterinarios Lasser


ncbi_organism_name: uncultured Rhodothermaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: Microcoleaceae cyanobacterium bin_387

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Palacky University Olomouc


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Uterus

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Danish Veterinary Consortium and AniCon


ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Mobiluncus curtisii

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Department of Bacteriology II, National Institute of Infectious Diseases


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 648905 5-18


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_organism_name: Pseudomonas sp. YQ_4

ncbi_submitter: WenZhou Medical University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_level: Chromosome

ncbi_assembly_name: Pseudomonas aeruginosa

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: Poland: Zielona Gora

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_assembly_name: freshwater MAG --- AM_bin-1483

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans OMZ175

ncbi_submitter: Cornell University


ncbi_country: South Korea:Sunchang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: Korea

ncbi_isolation_source: South Korea clinic22

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Los Alamos National Lab


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_isolation_source: anal swab

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Clostridium sp. CAG:508

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Russia: Chelyabinsk Region

ncbi_isolation_source: Ready-to-cook chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Rongcheng

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Aliidiomarina celeris

ncbi_submitter: Shandong University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes shahii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology I, National Institute of Infectious Diseases


ncbi_country: China: Jiangsu

ncbi_isolation_source: lungs of sick piglets

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Nanjing Agricultral University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Serratia sp. Leaf50

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. Leaf50


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Thiothrix sp. UBA5583

ncbi_submitter: University of Queensland


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Yonsei University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gallimonas merdae

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae


ncbi_assembly_name: IMG-taxon 2657245702 annotated assembly

ncbi_organism_name: Streptomyces sp. DpondAA-F4a

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Australia: Brisbane; QLD; University of Queensland

ncbi_isolation_source: AOM-Mn bioreactor day 314

ncbi_organism_name: Candidatus Methylomirabilota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Rubrimonas sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Aquisphaera giovannonii

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: China

ncbi_isolation_source: blood

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. TH23

ncbi_submitter: University of Alaska Fairbanks

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. TH23


ncbi_country: China: Zhoushan

ncbi_organism_name: Exiguobacterium sp. CH10

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. CH10


ncbi_organism_name: Dialister sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Henan

ncbi_isolation_source: Copper factory wastewater

ncbi_organism_name: Bacillus sp. OR-18

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. OR-18


ncbi_country: New Zealand: Southern

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Siliguri

ncbi_isolation_source: cast from soil

ncbi_organism_name: Chryseomicrobium excrementi

ncbi_submitter: University of North Bengal


ncbi_isolation_source: Pullet

ncbi_submitter: University of Missouri


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Catholic University of Health and Allied Sciences


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Dolosigranulum savutiense

ncbi_submitter: Duke University


ncbi_country: Russia: Kalmykia

ncbi_isolation_source: cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_isolation_source: egg

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-412-J13

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: University of Florida


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Madagascar

ncbi_isolate: Mycobacterium tuberculosis

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Klebsiella michiganensis

ncbi_strain_identifiers: NBRC 3318

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_assembly_name: Rumen uncultured genome RUG13770

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: WRAIR-Africa


ncbi_country: Poland: Katowice

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-a_bin-112

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Nizhny Novgorod scientific and research institute of epidemiology and microbiology name acad.I.N. Bl


ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lysinibacillus sp. NPDC056220

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolate: SPRUCE 661

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 661

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: 3110 StPb PI

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Tunisia: Mourouj

ncbi_isolation_source: Bovine meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_country: New Zealand: Waikato

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_country: Ethiopia: Amhara; East Gojjam

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: stool

ncbi_organism_name: Agathobaculum massiliense

ncbi_submitter: URMITE


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_organism_name: Streptomyces sp. NPDC002205


ncbi_country: Portugal: Porto

ncbi_isolation_source: urine

ncbi_organism_name: Limosilactobacillus urinaemulieris

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Anaerostipes sp.


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Parma


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: Candidatus Izemoplasmatales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Candidatus Izemoplasmatales;x__unclassified Candidatus Izemoplasmatales;s__Candidatus Izemoplasmatales bacterium


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Phocicoccus pinnipedialis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: [Eubacterium] siraeum 70/3

ncbi_submitter: MetaHIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;s__[Eubacterium] siraeum;x__[Eubacterium] siraeum 70/3


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Case Western Reserve University


ncbi_country: China

ncbi_isolation_source: manure wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 35


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: bioMerieux


ncbi_country: Poland: Warsaw

ncbi_submitter: National Medicines Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_country: United Kingdom: University of Surrey; Guildford


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus sp. FSL M7-0405

ncbi_submitter: Penn State


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Carnobacterium sp.

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Buttiauxella sp.


ncbi_country: Russia: Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Princeton University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: University of Queensland


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Institute for Agricultural and Fisheries and Food Research (ILVO)


ncbi_organism_name: Synechococcus sp. BA-120 BA3

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA97

ncbi_submitter: Broad Institute


ncbi_country: Spain: Marismas Odiel; Huelva

ncbi_isolation_source: saline soil

ncbi_organism_name: Pseudidiomarina terrestris

ncbi_submitter: University of Sevilla, Spain


ncbi_country: USA: FL

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Qingdao

ncbi_isolation_source: Rotten kelp

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: First Institution of Oceanography,SOA


ncbi_country: Austria: Vienna

ncbi_isolation_source: lab strain

ncbi_organism_name: Streptomyces lividans

ncbi_submitter: Bielefeld University


ncbi_country: China: Hainan

ncbi_organism_name: Acinetobacter sp. YH12132

ncbi_submitter: South China Agricultural University


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Romania: Bucharest

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Infectious Diseases "Matei Bals


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Belgium

ncbi_isolation_source: Hybrid assembly MagCore COL20160015 (Flongle 4)

ncbi_submitter: Sciensano


ncbi_organism_name: Bacteroides caccae CL03T12C61

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Arenibacter sp. UBA3178

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Streptomyces lavendulae subsp. lavendulae

ncbi_strain_identifiers: NBRC 3145

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: uncultured Slackia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_organism_name: Staphylococcus capitis

ncbi_strain_identifiers: AATYV

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial washings

ncbi_organism_name: Staphylococcus aureus M0050

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Calditrichia bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus F70893


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Bacillus sp. FSL K6-0764

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-0764


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_submitter: Monash University


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Anoxybacterium hadale

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Helicobacter sp.


ncbi_isolate: AOP5_GZ1_surf _bin _15

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP5_GZ1_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Puniceicoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials CNPEM

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: DOE JGI


ncbi_country: Israel

ncbi_isolation_source: Turkey with septicemic infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Georg-August University of Goettingen


ncbi_organism_name: Enterococcus faecium UC8668

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stenotrophomonas sp. UBA2123

ncbi_submitter: University of Queensland


ncbi_organism_name: Paraburkholderia sp. B3

ncbi_submitter: Duquesne University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Phycisphaera sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Holdemanella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Bartonella sp. CL5QHWL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Saccharopolyspora griseoalba

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella sp. C312

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_country: USA: Vermont

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Brachybacterium sp. JB7

ncbi_submitter: Dutton Lab, UCSD


ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Greene1014_20


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Chile:Tyndall Glacier

ncbi_isolate: AwMethylo

ncbi_isolation_source: Faecal sample of the glacier stonefly

ncbi_organism_name: Methylobacterium sp.

ncbi_strain_identifiers: AwMethylo

ncbi_submitter: National Institute of Genetics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Shasta Valley; California

ncbi_isolation_source: plant stem

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_assembly_name: Rumen uncultured genome RUG12036

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: Spain: Municipality in the province of Salamanca

ncbi_isolation_source: Brassica napus root

ncbi_organism_name: Microvirga brassicacearum

ncbi_submitter: University of Salamanca


ncbi_organism_name: Mesorhizobium sp. M0012

ncbi_submitter: Washington State University


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_submitter: Tecnologico de Monterrey


ncbi_country: South Korea

ncbi_isolation_source: Soil from a ginseng field

ncbi_organism_name: Pseudoxanthomonas daejeonensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: USA: Michigan State University Extension; Berrien County; Michigan

ncbi_isolation_source: leaf

ncbi_organism_name: Flavobacterium sp. MEB061

ncbi_submitter: University of Chicago


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: EBI


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: endotracheal tube (ETT) or tracheostomy tube

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_submitter: Santa Clara University


ncbi_assembly_name: Rumen uncultured genome RUG13947

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Marine research


ncbi_country: China

ncbi_isolation_source: food

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_isolation_source: Caecum

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Peruibe

ncbi_isolation_source: plant

ncbi_organism_name: Burkholderia sp. COPS

ncbi_strain_identifiers: COPS

ncbi_submitter: IFSC USP


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Latilactobacillus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Nebraska

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNMC


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada

ncbi_isolation_source: Imported Shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: China: Beilun estuary national nature reserve; Fangchenggang City; Guangxi Province

ncbi_isolation_source: Mangrove wetland sediments sample

ncbi_organism_name: Aestuariibacter sp. GS-14

ncbi_submitter: Institute of Applied and Environmental Microbiology


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces


ncbi_organism_name: Halobacillus andaensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: trachael aspirate

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: USA: FL

ncbi_isolation_source: uterus (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Nitrosopumilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Streptomyces murinus

ncbi_submitter: Central Institute of Fisheries Technology


ncbi_country: Netherlands

ncbi_organism_name: Mycobacterium xenopi RIVM700367

ncbi_submitter: KAUST


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: EMG


ncbi_country: Nepal: Guheswori

ncbi_isolation_source: Wild animal

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: Spain: Andalucia

ncbi_organism_name: Pseudomonas sp. PICF6

ncbi_submitter: Instituto de Agricultura Sostenible


ncbi_organism_name: Butyrivibrio sp. AE3009

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oceanispirochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Thermoguttaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Pedosphaera parvula Ellin514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Halobacteriovorax sp.


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Thauera sp.

ncbi_submitter: NanJing University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Draconibacterium orientale

ncbi_submitter: University Duisburg-Essen


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Terrisporobacter glycolicus

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Brunei

ncbi_isolation_source: farm

ncbi_submitter: QMUL


ncbi_organism_name: Prochlorococcus marinus

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Univeristy of Aberdeen


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Hiroshima University


ncbi_isolation_source: Faeces


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Texas A&M University


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_submitter: NORHED grant


ncbi_country: France

ncbi_isolation_source: Vaginal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG12284

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parasalinivibrio latis

ncbi_submitter: Temasek Life Sciences Laboratory


ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Planktophila dulcis

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila dulcis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Ruminococcus callidus


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Caldilineaceae bacterium


ncbi_organism_name: Methylotuvimicrobium alcaliphilum 20Z

ncbi_submitter: University of Valladolid


ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Fudan University


ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand

ncbi_isolation_source: low density polyethylene (LPDE) from waste management plant

ncbi_organism_name: Shewanella sp. SM87

ncbi_submitter: AgResearch


ncbi_organism_name: Clostridium celatum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom: London; England

ncbi_isolation_source: Hot water tap; Geest Office Building

ncbi_organism_name: Legionella geestiana

ncbi_submitter: Hospices Civils de Lyon


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14480

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Staphylococcus sp. FSL K6-0124

ncbi_submitter: Penn State


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Ruminococcus] torques


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: CA

ncbi_isolation_source: avian liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Lysobacter sp. Root690

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Shanxi University


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-2-11BA

ncbi_submitter: Arkin Lab


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B088;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: Xiamen University


ncbi_country: Switzerland

ncbi_isolation_source: Goat Cheese

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope


ncbi_country: USA: WI; Brown

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: Sphaerotilus natans

ncbi_submitter: Yokohama National University


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of California, Davis


ncbi_country: Germany

ncbi_organism_name: Chlamydia abortus

ncbi_submitter: Moredun Research Institute


ncbi_country: Spain

ncbi_isolation_source: gall bladder

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Gallionella sp.

ncbi_submitter: The University of Auckland


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Streptomyces triculaminicus

ncbi_submitter: Aarhus University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Xylanibacter rodentium


ncbi_country: South Korea: Uijeongbu

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter lucidus

ncbi_submitter: Seoul Women's University


ncbi_country: China

ncbi_organism_name: Nostoc linckia FACHB-391

ncbi_submitter: South China Normal University


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: Hangzhou Medical University


ncbi_country: Bangladesh

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pelagicoccus mobilis

ncbi_submitter: Shandong university


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_submitter: Dutch CPE surveillance study group


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Patescibacteria group bacterium UBA4473

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4473


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: sputum

ncbi_organism_name: Mycolicibacterium porcinum

ncbi_strain_identifiers: CSUR P1564

ncbi_submitter: URMITE


ncbi_strain_identifiers: LT2 KO STM2988

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_assembly_name: freshwater MAG --- Ja2_bin-0664

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_organism_name: uncultured Stomatobaculum sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPLOWO2_02_FULL_39_14


ncbi_isolation_source: Air filter

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sphingobium sp. SYK-6

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine metagenome


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: Portugal

ncbi_isolation_source: lab scale syngas reactor inoculated with brewery waste sludge

ncbi_organism_name: Acetobacterium wieringae

ncbi_strain_identifiers: JM

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: sputum sample

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis str. Beijing/DS6701


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: sediment

ncbi_organism_name: Acinetobacter sedimenti


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Dried milk

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Ildong Pharmaceutical


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: environment

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Salmonella sp. NW1222

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: IHU Mediterranee Infection


ncbi_assembly_name: Salinibacter ESSP84

ncbi_organism_name: Salinibacter sp.

ncbi_submitter: IMEDEA


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Aeromonas sp. 95A

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_submitter: Zhejianglab


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: uncultured Iamiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Roseibacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: SPRUCE 374

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_strain_identifiers: SPRUCE 374


ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: CNR-IPSP S.S. Bari


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Florence


ncbi_organism_name: uncultured Bordetella sp.


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Manitoba


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Bern


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Museum National d'Histoire Naturelle