ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia glebae

ncbi_submitter: LM-UGent


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Denmark

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hvidovre Hospital - University of Copenhagen


ncbi_country: USA:New York City

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: New York City MTA subway

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Charles University in Prague


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3188

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sciensano


ncbi_organism_name: Acinetobacter sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S034_09573

ncbi_submitter: Zhejiang University


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: Fischerella sp. PCC 9431

ncbi_submitter: JGI


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_submitter: JCVI


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland

ncbi_isolation_source: dairy product

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Consiglio per la Ricerca e la Sperimentazione in Agricoltura


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter felis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_country: Mexico: Gulf of Mexico

ncbi_isolation_source: Synechococcus sp. WH 8007 enrichment culture from coastal seawater

ncbi_organism_name: Synechococcus sp. WH 8007

ncbi_submitter: Mount Allison University


ncbi_country: Switzerland: Zurich

ncbi_submitter: University of Zurich


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Egypt

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Enorma burkinafasonensis


ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: University of Queensland


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: USA: Texas; Dallas

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_organism_name: Streptomyces sp. DSM 41931

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Chile

ncbi_isolation_source: Liver

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Iowa

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL S-118

ncbi_strain_identifiers: NRRL S-118

ncbi_submitter: University of Illinois


ncbi_country: China

ncbi_isolation_source: farm animal

ncbi_organism_name: Salmonella enterica

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: Intraabdominal tissue

ncbi_submitter: University of Pittsburgh


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: IMG-taxon 2667527402 annotated assembly

ncbi_organism_name: Cryobacterium psychrotolerans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Clostridium sardiniense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Yunnan; Dian lake

ncbi_isolation_source: phycosphere

ncbi_organism_name: Pseudogemmobacter lacusdianii

ncbi_refseq_category: reference genome

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Brazil

ncbi_isolation_source: blood total

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Streptomyces sp. NPDC005474

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. PTD9-10

ncbi_submitter: King Mongkut's Institute of Technology Ladkrabang


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces fuscichromogenes


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces fungicidicus


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University Hospital Basel


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_country: Hong Kong: Pokfulam

ncbi_isolation_source: freshwater stream

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Yoonia sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 6

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Sulfurospirillum sp.

ncbi_strain_identifiers: MAG 6

ncbi_submitter: WHOI


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Minnesota

ncbi_isolation_source: CSF

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_country: Thailand

ncbi_isolation_source: trachea

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: South Korea: Namjeju

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_organism_name: Pelagimonas phthalicica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Paenibacillus sp. BK720


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Shandong

ncbi_isolation_source: Dead chicken liver

ncbi_organism_name: Salmonella sp. S64

ncbi_submitter: liaocheng university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Gehongia tenuis

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Aeromonas sp. R7-4

ncbi_submitter: Hangzhou CDC


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: Aarhus University


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: Spain: Cabrerizos; Salamanca

ncbi_isolation_source: nodules

ncbi_organism_name: Micromonospora saelicesensis

ncbi_submitter: Universidad de Salamanca


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: New Zealand

ncbi_isolation_source: Galega officinalis root nodule

ncbi_strain_identifiers: HAMBI 1141

ncbi_submitter: UH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Neorhizobium;s__Neorhizobium galegae;x__Neorhizobium galegae bv. officinalis;x__Neorhizobium galegae bv. officinalis bv. officinalis str. HAMBI 1141


ncbi_country: Atlantic Ocean: South Georgia (Cumberland Bay)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Syntrophobacteria bacterium

ncbi_submitter: University of Bremen


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_assembly_name: freshwater MAG --- Umea3_bin-0908

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_organism_name: Longimicrobium sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Stutzerimonas balearica

ncbi_strain_identifiers: AU CAS-1

ncbi_submitter: ANNAMALAI UNIVERSITY


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bryobacterales bacterium


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: China: Hubei; Yingcheng

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Rhizomicrobium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_assembly_name: freshwater MAG --- UppL3_bin-301

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Chr-Hansen


ncbi_assembly_name: freshwater MAG --- C4_bin-165

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_assembly_name: Janthinobacterium sp. CG23_2

ncbi_isolate: Janthinobacterium sp. CG23_25

ncbi_organism_name: Janthinobacterium sp. CG23_2

ncbi_strain_identifiers: Janthinobacterium sp. CG23_25

ncbi_submitter: National Center for Genome Resources (NCGR)


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0044

ncbi_submitter: Broad Institute


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China

ncbi_organism_name: Streptococcus suis


ncbi_country: Germany

ncbi_isolation_source: Winter laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Victoria


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium GW2011_GWD2_47_17


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab veterinary clinic

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: India: Karnal;Haryana

ncbi_organism_name: Limosilactobacillus fermentum Lf1

ncbi_submitter: National Dairy Research Institute


ncbi_organism_name: Bacillus sp. FSL W8-0116

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W8-0116


ncbi_organism_name: Neisseria weixii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Salmonella sp. C2719

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Novosphingobium aquiterrae

ncbi_strain_identifiers: NCAIM B.02537

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella sp. NW755

ncbi_submitter: Sichuan University


ncbi_organism_name: Paenacidovorax caeni

ncbi_submitter: Biology Centre CAS


ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter bacterium nBUS_25


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Streptomyces rimosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Streptomyces werraensis


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__unclassified Candidatus Marinamargulisbacteria;s__Candidatus Marinamargulisbacteria bacterium


ncbi_isolation_source: turkey

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: duck organ

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_country: Italy

ncbi_isolation_source: biofilm

ncbi_organism_name: Phaeobacter italicus

ncbi_strain_identifiers: CECT 7645

ncbi_submitter: UVEG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia massiliensis

ncbi_submitter: Duke University


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Massachusetts

ncbi_isolation_source: UTI

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_country: Germany: Dresden

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Fluviicola sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Megasphaera sp. UBA4352

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhizobiales bacterium UBA3584


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Oceanispirochaeta sp.

ncbi_submitter: McGill University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_isolation_source: Wild bird

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ecotype;Quinolone resistant;2016-02-522

ncbi_submitter: NORWEGIAN VETERINARY INSTITUTE


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Azotobacter vinelandii CA6

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Taipei Medical University


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter sp. 1295259

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 1295259


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0426R

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: coastal water

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: The University of Tokyo


ncbi_country: Germany: Sylt

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom:Aberdeen

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: India: Nazareth Hospital; Laitumkhrah; Shillong; Meghalaya

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Denmark: Jytland

ncbi_isolation_source: milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_assembly_name: Bime

ncbi_isolate: Zhangye

ncbi_organism_name: Rickettsia hoogstraalii

ncbi_strain_identifiers: Zhangye

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Leuconostoc lactis


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_submitter: Technical University Munich


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Virgibacillus pantothenticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Italy: Panarea Island; Black Point

ncbi_isolation_source: pieces of a sufidic chimney and hydrothermal fluid

ncbi_organism_name: Marinitoga aeolica

ncbi_submitter: Aix-Marseille University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_organism_name: Frigoribacterium faeni


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: United Kingdom

ncbi_organism_name: Myxococcus sp. AB025A

ncbi_submitter: Aberystwyth University


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Yingtan

ncbi_isolation_source: paddy soil

ncbi_organism_name: Enterobacter sp. TCD1-1

ncbi_submitter: china acadmy of science


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Switzerland

ncbi_organism_name: Trueperella pecoris

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_assembly_name: Rumen uncultured genome RUG14441

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Shewanella algae

ncbi_submitter: Soochow University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Ignavibacteriales bacterium UBA1563

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Marinobacter adhaerens

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Agromyces sp. NPDC127015

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Blautia caecimuris


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces sp. Da 82-17

ncbi_submitter: Ivan Franko National University of Lviv


ncbi_organism_name: Candidatus Nanopelagicus sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__unclassified Candidatus Nanopelagicus;s__Candidatus Nanopelagicus sp.


ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Candidatus Puniceispirillales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__Candidatus Puniceispirillales bacterium


ncbi_organism_name: Micrococcus luteus


ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: Ottawa Research and Development Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Thailand: Saraburi

ncbi_isolation_source: urine

ncbi_submitter: Faculty of Public Health


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: AGROSAVIA


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Venezuela

ncbi_isolation_source: Post surgical secretion

ncbi_organism_name: Staphylococcus aureus DAR5864

ncbi_submitter: Broad Institute


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pretoria


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: Acutalibacter muris


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Switzerland: Basel

ncbi_submitter: university of fribourg, Faculty of scienec and medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Hungatella sp. UBA6642

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces coeruleorubidus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Pseudomonas sp. TWI549

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: wound or pus swab

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Shenzhen

ncbi_organism_name: Veillonella atypica

ncbi_submitter: BGI


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Lysobacteraceae bacterium SCN 69-25

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: United Kingdom: CSC Conventional; Balruddery Farm; Angus

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The James Hutton Institute


ncbi_assembly_level: Chromosome

ncbi_isolation_source: brain

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_organism_name: Serratia sp. BNK-12

ncbi_submitter: National Institute of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. BNK-12


ncbi_country: Sri Lanka

ncbi_organism_name: Corallococcus macrosporus DSM 14697

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_type_material_designation: assembly designated as neotype


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Chicago


ncbi_country: China

ncbi_isolation_source: Bus; public transportation

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat-sen University


ncbi_country: Switzerland

ncbi_isolation_source: calf igloo

ncbi_submitter: University of Bern


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hainan

ncbi_isolation_source: meat

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chinese Center for Disease Control and Prevention's infectious disease unit


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: Duke University


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Microcoleus sp. TY_HY_2_bin.32

ncbi_submitter: CAU


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guizhou; Liupanshui; Panxian

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Malaysia

ncbi_isolation_source: Faecal

ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: Monash University Malaysia


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: GenFS


ncbi_country: Lebanon

ncbi_isolation_source: clinical

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University


ncbi_country: China: Guangdong

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Hangzhou DIAN Medical Testing Center


ncbi_isolate: Francisella tularensis 16007282

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_strain_identifiers: Francisella tularensis 16007282

ncbi_submitter: WAGENINGEN UR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Bartonella taylorii 8TBB

ncbi_submitter: Broad Institute


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Secretion

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_strain_identifiers: 10v summer

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_submitter: University of Oxford


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: South Africa: Zola

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia insidiosa

ncbi_submitter: J.Craig Venter Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Jinan

ncbi_isolation_source: Roast duck

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Detroit

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_submitter: INRA


ncbi_country: Italy: not applicable

ncbi_isolation_source: sea

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Croatian Veterinary Institute


ncbi_country: Colombia

ncbi_isolation_source: bood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_submitter: University of Trento


ncbi_country: China: Sanming City; Fujian

ncbi_isolation_source: sewage sludge from wastewater treatment plant

ncbi_organism_name: Anaerotignum sp. MB30-C6

ncbi_submitter: Sanming University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Candidatus Aquilonibacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Minnesota

ncbi_organism_name: Mycobacterium sp. DL592

ncbi_submitter: University of Minnesota


ncbi_country: Viet Nam: An Giang

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Biotechnology Centre of Ho Chi Minh city


ncbi_country: USA

ncbi_organism_name: Clostridium tertium

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: Ileibacterium valens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolate: SPRUCE 617

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 617

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: freshwater MAG --- Day6-2_bin-264

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Sudan

ncbi_organism_name: Brucella abortus F6/05-9

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-125

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Paenibacillus sabinae T27

ncbi_submitter: China Agricultural University


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pre-capsular lymph node

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Alphaproteobacteria bacterium UBA4623

ncbi_submitter: University of Queensland


ncbi_isolation_source: sputum

ncbi_organism_name: Rothia sp. HMSC072E10

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC072E10


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: uncultured Lepagella sp.


ncbi_organism_name: uncultured Chloroherpeton sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Desulfurella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Cyanobium sp. NIES-981

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Lactobacillus iners

ncbi_submitter: University of Toronto


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_assembly_name: freshwater MAG --- Day6-5_bin-554

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS


ncbi_assembly_name: freshwater MAG --- Loclat_bin-12236

ncbi_organism_name: uncultured bacterium


ncbi_country: Ethiopia: Amhara; North Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Bergeyella sp.


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Symbiobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Aestuariibaculum suncheonense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Wuhan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wuhan Centers for Disease Prevention and Control


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Brazil: AMazonas; Iranbunda

ncbi_isolation_source: gut

ncbi_organism_name: Erwiniaceae bacterium L1_55_4

ncbi_submitter: University of Lausanne


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Queensland


ncbi_organism_name: Fusobacterium vincentii ATCC 49256

ncbi_submitter: Integrated Genomics


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rennes Hospital


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. FSL W7-1582

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W7-1582


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_country: Poland: Warsaw

ncbi_isolation_source: conjugation experiment

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured bacterium


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: P9 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Ningxia Hui Autonomous Region Center for Disease Control and Prevention


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: China: Kumtag desert

ncbi_organism_name: Sphingobacterium haloxyli

ncbi_submitter: Chinese Academy of Forestry


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonas kermanshahensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Thiomonas;x__unclassified Thiomonas;s__Thiomonas sp.


ncbi_country: Italy

ncbi_isolation_source: Bronchial Aspirate

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Czech Republic

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA6575


ncbi_country: Bolivia: Aranjuez; La Paz

ncbi_isolation_source: Choqueyapu River

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NPDC048665

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Paenibacillus aceris

ncbi_submitter: Chung-Ang University


ncbi_assembly_name: PAGU 1802

ncbi_isolate: PAGU 1802

ncbi_organism_name: Fusobacterium watanabei

ncbi_strain_identifiers: PAGU 1802

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: SALMO-NVWA 3.62

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_strain_identifiers: SALMO-NVWA 3.62

ncbi_submitter: dtu national food institute


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Kazakhstan: Nur-Sultan

ncbi_isolation_source: purulent sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: National Center for Biotechnology


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Coraliomargarita sp. CAG:312

ncbi_submitter: DTU


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV143

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_isolate: AOP40_10SA_surf _bin _18

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP40_10SA_surf _bin _18

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom: England

ncbi_isolation_source: Pneumonia sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Wroclaw


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Thermogutta sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_country: USA: MD

ncbi_organism_name: Lacrimispora saccharolytica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Cyanobacteria bacterium P01_A01_bin.40

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_A01_bin.40


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rossellomorea sp. LjRoot5

ncbi_submitter: Aarhus University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Oliverpabstia intestinalis


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylosinus sp. 3S-1

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Australia: Darwin; NT

ncbi_isolation_source: Tumulitermes pastinator termitarium soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0041

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Minho


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Peptoniphilus duerdenii

ncbi_submitter: EMG


ncbi_country: France: Limoges

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institut Pasteur


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: wheat rhizosphere from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-R-30

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: household water source

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: Canada: Lacombe

ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: AAFC


ncbi_isolation_source: Out-of-house environment

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: Cuba: Gardens of the Queen

ncbi_isolation_source: tissue

ncbi_organism_name: Pseudoalteromonas sp. bablab_jr010

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Stanford University


ncbi_isolation_source: soil

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-2b

ncbi_strain_identifiers: Hp P-2b

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Microbacterium paraoxydans

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolate: Fecal samples

ncbi_isolation_source: Assistance Publique - Hopitaux de Paris

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacillus sp. FSL K6-1033

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-1033


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Canada:New Brunswick; Shippagan

ncbi_submitter: Health Canada


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: faecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Malaya


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Campylobacter jejuni subsp. doylei


ncbi_country: China: Qinghai Province

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Huazhong agricultural university


ncbi_isolation_source: Chicken meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Enterococcus gilvus

ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Missouri; St. Louis

ncbi_organism_name: Mycobacterium marseillense

ncbi_submitter: Washington University School of Medicine


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Gordonibacter sp. An232A

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: EPSC

ncbi_submitter: Applied Microbiology, Bioproduction, Department of Science, Technology and Innovation, Kobe University


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Peribacillus sp. NPDC058076

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus pyogenes ABC020017526

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- Erken-D3_bin-0487

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Roseivirga sp. UBA1988

ncbi_submitter: University of Queensland


ncbi_assembly_name: Salmonella enterica CVM N43449 v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: FDA


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: City University of Hong Kong


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Freie Universitat Berlin


ncbi_country: Viet Nam

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: Israel Institute for Biological Research


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_submitter: China Agricultural University


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Chile: Santiago

ncbi_submitter: University of Maryland, Baltimore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_isolation_source: rust layer

ncbi_organism_name: Desulfobaculum bizertense

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nose

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Denmark

ncbi_isolation_source: pork

ncbi_organism_name: Arcobacter porcinus

ncbi_submitter: Ghent University


ncbi_country: USA: Tucson; AZ

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Thiomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human stool

ncbi_organism_name: Segatella copri

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: South Korea: Jangsu

ncbi_isolation_source: compost

ncbi_organism_name: Geobacillus zalihae

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Salmonella sp. NW1192

ncbi_submitter: Sichuan University


ncbi_organism_name: Lonepinella koalarum

ncbi_submitter: The University of Queensland


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: bacterium

ncbi_submitter: University of Montreal


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Candidatus Scybalocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Scybalocola (ex Gilroy et al. 2021);s__Candidatus Scybalocola faecigallinarum


ncbi_organism_name: Streptomyces sp. NPDC052396

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Selenomonas sputigena


ncbi_submitter: Colorado State University


ncbi_submitter: China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Soochow University


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Cefas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Enterococcus sp.


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_country: USA: mouth of the Rio Grande

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Institute of Experimental Medicine


ncbi_country: France

ncbi_isolation_source: Pleural pus

ncbi_organism_name: Acinetobacter sp. CIP 51.11

ncbi_submitter: Broad Institute


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Pacificispira sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Ghana

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: Blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides eggerthii


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: UW-Madison


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Idiomarina abyssalis


ncbi_country: Canada: Saskatoon

ncbi_isolation_source: total DNA extraction from floral tissue of an infected plant

ncbi_organism_name: 'Brassica napus' phytoplasma

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__'Brassica napus' phytoplasma


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Sphingopyxis sp. H073

ncbi_submitter: US EPA


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Oxford


ncbi_isolation_source: screen

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Poultry

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: National Institute of Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG10133

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa: Kwazulu-Natal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Urine

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_submitter: Massachusetts General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;s__Serratia marcescens;x__Serratia marcescens subsp. marcescens ATCC 13880


ncbi_organism_name: Streptomyces sp. NPDC048629

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Raoultella sp. 18084

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0818

ncbi_submitter: Broad Institute


ncbi_country: Taiwan

ncbi_isolation_source: Pickled cucumber

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Food Industry Research and Development Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: USA: Cedar Fall; IA

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: nankai university


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: mature fine tailings from oil sands tailings pond grown in methanogenic alkane degrading enrichment culture

ncbi_organism_name: Sulfurospirillum sp. SCADC

ncbi_submitter: Hydrocarbon Metagenomic Project


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: GNS Science


ncbi_isolation_source: human endoscopy

ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: North Carolina State University


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National laboratory for health, environment and food


ncbi_assembly_name: Rumen uncultured genome RUG10248

ncbi_organism_name: uncultured Ruminobacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Arthrobacter bambusae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Muribaculum intestinale


ncbi_country: China: Shandong

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China agricultural university


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. S4

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. S4


ncbi_country: Norway

ncbi_isolation_source: poultry processing facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Chesapeake Bay; Maryland

ncbi_isolation_source: surface seawater

ncbi_organism_name: Shewanella sp. SG44-2

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Variovorax ginsengisoli


ncbi_country: Germany: Sylt

ncbi_organism_name: Vibrio crassostreae


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodovulum sp.

ncbi_submitter: EMG


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Paenibacillus rhizolycopersici

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured bacterium


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MRSN BI Team


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: spontaneous mutant of Mycolicibacterium smegmatis ATCC 19420 with increased resistance to lupulone

ncbi_organism_name: Mycolicibacterium smegmatis

ncbi_submitter: Aberystwyth University


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia coli O119:H6

ncbi_submitter: University of Miyazaki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O119;x__Escherichia coli O119:H6


ncbi_country: USA: PA

ncbi_isolation_source: Market Swine

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59492F

ncbi_submitter: FDA


ncbi_organism_name: Sphingorhabdus rigui

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylacidiphilum caldifontis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Methylacidiphilum caldifontis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Methylacidiphilum caldifontis


ncbi_country: Singapore

ncbi_isolation_source: Pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Russia: Nizhny Novgorod

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Aerococcus mictus

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Chongqing Medical University


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. PH10-H1

ncbi_submitter: Yildiz Technical University


ncbi_organism_name: Aeromonas eucrenophila

ncbi_strain_identifiers: CECT 4224

ncbi_submitter: UCONNMISEQ


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Polymyxin B

ncbi_submitter: The University of Queensland


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV129

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Brevibacillus porteri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience