gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces bauhiniae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Salmonella sp. ZJHZ21_0168

ncbi_submitter: Zhejiang university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Renji Hospital Affiliated to Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: Monash University


ncbi_organism_name: Bacillus safensis


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Streptomyces sp. NPDC059957


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S7

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia sp. WS2442

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Mycobacteriaceae bacterium

ncbi_submitter: Sichuan University


ncbi_isolation_source: ballast tank

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: human gut

ncbi_organism_name: Rikenellaceae bacterium


ncbi_organism_name: Tetragenococcus sp.

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: skin

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Huaqiao University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus raffinosus

ncbi_submitter: BGI-Shenzhen


ncbi_country: Indian Ocean

ncbi_organism_name: Priestia aryabhattai

ncbi_strain_identifiers: MCCB 387

ncbi_submitter: National Centre for Aquatic Animal Health


ncbi_assembly_level: Complete Genome

ncbi_country: Finland

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptomyces sp. NPDC006660

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human skin

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_submitter: NIH/NHGRI


ncbi_country: Switzerland: Giubiasco

ncbi_isolation_source: stream/river surface water

ncbi_refseq_category: reference genome

ncbi_submitter: University of Zurich


ncbi_country: United Kingdom

ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_assembly_name: Rumen uncultured genome RUG11827

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3090

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Poland

ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: NanKai universit


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: France: Paris

ncbi_isolation_source: midstream urine

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: aphp


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_assembly_name: freshwater MAG --- Umea_bin-07856

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Actinomyces bouchesdurhonensis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Helgoland Roads

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Winogradskyella pacifica

ncbi_submitter: Mediterranean Institute For Advanced Studies


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Xin Hua Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_submitter: Northern Arizona University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida FSC595


ncbi_assembly_level: Chromosome

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_country: Netherlands

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus M79664

ncbi_submitter: Broad Institute


gtdb_type_species_of_genus: t

ncbi_isolation_source: thermophilic granular sludge

ncbi_organism_name: Bellilinea caldifistulae

ncbi_submitter: National Institute of Advanced Industrial Science and Technology (AIST)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodopirellula sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Mordavella massiliensis

ncbi_submitter: University of Chicago


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: forest soil

ncbi_organism_name: Frankiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Achromobacter sp. ACRQX

ncbi_strain_identifiers: ACRQX

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil with plant cover day20_noCT

ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12508

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Carnobacteriaceae bacterium


ncbi_isolation_source: other

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Actinopolymorpha cephalotaxi

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Tractidigestivibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Justus Liebig University Giessen


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Italy: Milano

ncbi_isolation_source: Mozzarella

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Universita di Torino


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: China: Hubei

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_submitter: Loyola University Chicago


ncbi_country: India: Uttar Pradesh

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3706

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Acinetobacter baumannii 44298_8

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Auritidibacter sp. Marseille-P8566

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Streptomyces rubiginosohelvolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces nigra


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: California; Middletown

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Argentina: Curacoi

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces curacoi

ncbi_submitter: Bielefeld University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: South Africa: White Sands Reef; Algoa Bay; Eastern Cape Province

ncbi_organism_name: Candidatus Didemnitutus mandela

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Saudi Arabia

ncbi_isolation_source: citrus infected tissue

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Citrus Research and Education center, Univerisity of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Germany

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Universidad Autonoma de Yucatan


ncbi_organism_name: Gallionellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_country: China: Nanning City; Guangxi Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Streptococcus suis YS146

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Chitinophagales bacterium


ncbi_country: Austria

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: Pacific Ocean

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfovibrionia;o__Desulfovibrionales;f__Desulfovibrionaceae;g__Maridesulfovibrio;s__Maridesulfovibrio hydrothermalis;x__Maridesulfovibrio hydrothermalis AM13 = DSM 14728


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: sake

ncbi_organism_name: Kocuria sp. TGY1127_2

ncbi_submitter: Toyama Prefectural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Teagasc Food Research Centre, Ireland


ncbi_country: Denmark

ncbi_isolation_source: Blood

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Aarhus University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Helicobacter sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Groin swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Luxembourg: Belvaux

ncbi_isolation_source: bioreactor

ncbi_organism_name: Cloacimonetes bacterium UBA4186

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Cloacimonetes bacterium UBA4186


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: skin

ncbi_organism_name: Cutibacterium acnes HL025PA2

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Phocaeicola sartorii


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Spain: Madrid

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Aliiroseovarius sp. xm-v-225

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yantai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yantai Yuhuangding Hospital


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Neisseriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 143

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Italy: Parma

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Parma


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_01_FULL_35_13


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Otariodibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Sri Lanka

ncbi_isolation_source: Piper betle

ncbi_organism_name: Stenotrophomonas beteli

ncbi_strain_identifiers: LMG 978

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M35938

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Deinococcus sp. ME38

ncbi_submitter: Instituto Nacional de Cardiologia


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Center for Nuclear Energy in Agriculture - University of Sao Paulo


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: uncultured Nigerium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: Monash University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera thermopropionivorans


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: host stool sample

ncbi_organism_name: Brevibacillus massiliensis

ncbi_strain_identifiers: phR

ncbi_submitter: URMITE CNRS UMR 6236 IRD 198


ncbi_country: France: Pyrenees orientales

ncbi_submitter: EVOLMYCO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides;x__Mycoplasma mycoides subsp. mycoides PO-67


ncbi_country: Malaysia: Sungai Gabai Waterfall; Selangor

ncbi_isolation_source: Waterfall

ncbi_organism_name: Microbacterium hominis

ncbi_submitter: University of Malaya


ncbi_isolation_source: beef carpaccio

ncbi_organism_name: Latilactobacillus fuchuensis

ncbi_submitter: INRA


ncbi_country: Spain

ncbi_organism_name: Salinibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolate: Fecal samples

ncbi_isolation_source: VDG

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: human gut


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: pig farm

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: University of Surrey


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas veronii

ncbi_strain_identifiers: Pi 23.1 MC

ncbi_submitter: UFMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fifth Affiliated Hospital, Southern Medical University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Haemophilus parahaemolyticus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_organism_name: Mycobacterium tuberculosis EAI5

ncbi_submitter: Department of Life Sciences, Mumbai University, Mumbai, India


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Canada: Quebec

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA: Texas

ncbi_isolation_source: submandibular wound of a 53-year-old man

ncbi_organism_name: Neisseria bacilliformis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Leifsonia sp. 115AMFTsu3.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: EMG


ncbi_isolate: metabat2_6732_HOM_VAC_hifiasm.148 MAG

ncbi_organism_name: Olsenella sp. An270

ncbi_strain_identifiers: metabat2_6732_HOM_VAC_hifiasm.148 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Spongiibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: China National Center For Food Safety and Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2593339209 annotated assembly

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Houston Methodist Research Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_assembly_name: Brucella abortus 381

ncbi_country: Russia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_country: Brazil

ncbi_isolation_source: environment drag swab farm

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Thailand: Nong Khai

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chulalonfkorn university


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter sp. MGH 3

ncbi_strain_identifiers: MGH 3

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 3


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA

ncbi_isolation_source: Unknown Specimen Type

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Cyanobacteria bacterium J06554_1

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium J06554_1


ncbi_organism_name: Thermosynechococcus sp. HY593

ncbi_submitter: Academia Sinica


ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: blood

ncbi_submitter: Duke University


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: mouse gut

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: New Jersey

ncbi_isolation_source: sediment from drainage ditch

ncbi_organism_name: Dehalobacter sp. 12DCB1

ncbi_submitter: Cornell University


ncbi_country: Italy

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Universita degli Studi di Firenze


ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Zhejiang University


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Pleurocapsa sp. FMAR1

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Fujian

ncbi_isolation_source: Wound; drainage; pus

ncbi_organism_name: Nocardia terpenica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: Chile

ncbi_isolation_source: smoked turkey ham

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Levilactobacillus brevis

ncbi_strain_identifiers: CGMCC NO.3414

ncbi_submitter: Tianjin University of Science & Technology


ncbi_organism_name: Dysgonomonas mossii


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_genome_category: derived from single cell

ncbi_organism_name: Deltaproteobacteria bacterium TL4

ncbi_submitter: CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium TL4


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Urechidicola sp.

ncbi_submitter: University of East Anglia


ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Dokdonia genika

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Spain: Valencia

ncbi_isolation_source: water column of the freshwater reservoir Embalse de Amadorio in Spain

ncbi_organism_name: actinobacterium acMicro-4

ncbi_submitter: Evolutionary Genomics Group (UMH-EGG)


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Statens Serum Institut


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Halomonas sp. A29

ncbi_submitter: Northeast Forestry University


ncbi_organism_name: uncultured Ginsengibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Zambia: Lusaka

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: University of Maryland College Park


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Veillonella sp. AF36-20BH

ncbi_submitter: BGI


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0295

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: gut

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Germany: Bad Bentheim

ncbi_isolation_source: root nodule

ncbi_organism_name: Frankia sp. AgB1.8

ncbi_submitter: Texas State University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_country: Australia: New South Wales

ncbi_submitter: Curtin University


ncbi_submitter: Medical Mycology Research Center


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: South Korea

ncbi_isolation_source: seaweed

ncbi_organism_name: Flavobacterium litorale

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology (KRIBB)


ncbi_country: Australia: Tanunda SA

ncbi_isolation_source: freshwater

ncbi_organism_name: Chrysosporum bergii ANA360D

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: China

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Novosphingobium sp. MMS21-SN21R

ncbi_submitter: Chungnam National University


ncbi_country: Spain: Santander

ncbi_isolation_source: clinical

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Federal University of Bahia


ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Pittsburgh


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA

ncbi_organism_name: Acinetobacter sp. ACNIH2

ncbi_submitter: NIH


ncbi_country: Italy: Como

ncbi_isolation_source: sputum

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Candidatus Fervidibacter sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Fervidibacterota;g__Candidatus Fervidibacter;x__unclassified Candidatus Fervidibacter;s__Candidatus Fervidibacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Nitrobacter winogradskyi Nb-255


ncbi_country: USA: California

ncbi_isolation_source: colon

ncbi_organism_name: Campylobacter lari subsp. concheus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_submitter: lebanese american university


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Lachnospiraceae bacterium UBA1778

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_country: Germany

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Czech Republic

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium olomucense

ncbi_submitter: University of Parma


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Portugal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Streptomyces sp. NBC_00285

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal content of marmot

ncbi_organism_name: Arthrobacter sp. zg-Y1171

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: IMG-taxon 2593339130 annotated assembly

ncbi_organism_name: Arthrobacter sp. UNCCL28

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Singapore

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Burkholderia mallei

ncbi_submitter: USAMRIID


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Utah

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater lake Microcystis colony

ncbi_organism_name: Burkholderia sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: India: Colachel

ncbi_isolation_source: marine sponge

ncbi_organism_name: Streptomyces sp. ICN441

ncbi_submitter: Manonmaniam Sundaranar University


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_country: China: suburb of Nanjing; Jiangsu Province

ncbi_isolation_source: heavy-metal-polluted farm soil

ncbi_organism_name: Pseudoduganella albidiflava

ncbi_submitter: University of Tuebingen


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: bark

ncbi_organism_name: Edaphobacter sp.

ncbi_submitter: DNASense ApS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: Pseudopedobacter sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Xinjiang

ncbi_isolation_source: Oil reservoir production water

ncbi_organism_name: Dietzia sp. B44

ncbi_submitter: Peking University


ncbi_assembly_name: freshwater MAG --- VK_bin-2602

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_genome_representation: partial

ncbi_organism_name: Thalassotalea piscium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Konkuk University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acetobacter sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Candidatus Brevefilum sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__Anaerolineaceae;g__Candidatus Brevifilum;x__environmental samples;s__uncultured Candidatus Brevefilum sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Neisseria sp. CP9

ncbi_submitter: Sandia National Laboratories


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M046S2

ncbi_submitter: Universite de Montreal


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Mixta calida

ncbi_submitter: University of Pretoria


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Xenophilus sp.

ncbi_submitter: University of South Africa


ncbi_country: Sweden

ncbi_isolate: Campylobacter jejuni

ncbi_isolation_source: Chicken caeca

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: ST-19;Campylobacter jejuni

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Guangdong province

ncbi_isolation_source: Cerebro-Spinal Fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-13

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_strain_identifiers: new MAG-13

ncbi_submitter: Micoorganism


ncbi_isolation_source: peritoneal liquid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Burkholderia pseudomallei


ncbi_assembly_name: SPADES assembly of Enterobacter cloacae ND12

ncbi_country: USA

ncbi_isolation_source: excreted bodily substance

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hormaechei


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Caldisericales bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: gut

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Durham; NC

ncbi_isolation_source: Duke University Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_organism_name: Campylobacter showae

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Burkholderia  cenocepacia BCC0055

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: CT

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_country: USA: Mississippi

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. ms115

ncbi_submitter: Cornell University


ncbi_country: Canada: British Columbia

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany

ncbi_isolation_source: Oysters

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus epidermidis NIH051668

ncbi_submitter: NIH-NISC


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Khon Kaen University


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Urinary tract

ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: tissue

ncbi_organism_name: Proteus alimentorum

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Prevotella sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: intestinal contents

ncbi_organism_name: Sphingobacterium sp. xlx-130

ncbi_submitter: China CDC


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Egypt

ncbi_isolation_source: honey

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: National research centre


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: USA: Looe Key Reef; Florida Keys

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Halomonas sp. R1t4

ncbi_submitter: University of Florida


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K4-188

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Streptomyces avidinii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Caldalkalibacillus thermarum TA2.A1

ncbi_submitter: University of Otago


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: blood

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Aquimarina muelleri

ncbi_submitter: Long Island University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maui Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: MIPI

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Columbia University Medical Center


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: China: Maoming

ncbi_organism_name: Salmonella sp. 17E42

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: terrestrial

ncbi_organism_name: Brucella anthropi

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Moscow

ncbi_submitter: SRCAMB


ncbi_organism_name: Capnocytophaga canimorsus

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_country: Switzerland: Ticino

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: University Hospital Duesseldorf


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: [Clostridium] clostridioforme AGR2157

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Beijing

ncbi_isolation_source: piggery wastewater treatment system

ncbi_organism_name: Alcaligenes ammonioxydans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Urechidicola vernalis


ncbi_isolation_source: human fecal sample

ncbi_organism_name: Peptoniphilus catoniae

ncbi_submitter: URMITE


ncbi_assembly_name: Rumen uncultured genome RUG12351

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: Bacillus sp. C15(2022)

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. C15(2022)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: China: Guangdong

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: Institute of Marine Research


ncbi_submitter: University of Oslo


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: Plant stem

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: University of Agriculture Faisalabad


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Michigan


ncbi_country: China: Enshi City; Hubei Province

ncbi_isolation_source: Selenium rich soil

ncbi_organism_name: Dyella sp. LX-1

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: SOAPdenovo 1.06

ncbi_organism_name: Nocardiopsis prasina DSM 43845

ncbi_submitter: Yunnan Institute of Microbiology, Yunnan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Mesoplasma chauliocola ATCC 49578

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Anantpur; Andhra Pradesh

ncbi_isolation_source: soil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: uncultured Candidatus Saccharimonas sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__environmental samples;s__uncultured Candidatus Saccharimonas sp.


ncbi_country: Antarctica

ncbi_isolation_source: MS5-1 sample; Antarctic (ecotone) soil

ncbi_organism_name: Chitinophagales bacterium 33-2

ncbi_submitter: Centre for Microbial Ecology and Genomics, University of Pretoria,

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__unclassified Chitinophagales;s__Chitinophagales bacterium 33-2


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas cichorii

ncbi_submitter: University of Toronto


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: IMG-taxon 2671180171 annotated assembly

ncbi_organism_name: Virgibacillus salinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Pakistan: Balochistan

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sellimonas catena

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Paraliobacillus quinghaiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_organism_name: Escherichia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Rickettsia typhi str. TH1527

ncbi_submitter: Los Alamos National Lab


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Palacky University Olomouc


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. equuli

ncbi_submitter: Universiteit Gent


ncbi_country: New Zealand

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_country: Namibia: Etosha National Wild Park

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: CEES, Department of biosciences, University of Oslo


ncbi_country: Spain: Santander

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_country: China: Ningxia; Yinchuan

ncbi_isolation_source: Skin/soft tissue

ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Thermoanaerobacter pentosaceus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Mycobacteroides abscessus 3A-0122-R

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: Deinococcus radiodurans

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG13899

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: Streptomyces sp. NPDC126503

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA5138


ncbi_country: USA: Georgia

ncbi_isolation_source: week A3 calf 56 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_assembly_name: freshwater MAG --- E-1_bin-227

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Gansu

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: India: Hyderabad

ncbi_isolation_source: Blood-peripheral

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jawaharlal Institute of Postgraduate Medical Education and Research


ncbi_country: Netherlands

ncbi_isolation_source: Dairy starter

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Radboudumc


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_country: China: Zhanjiang Bay.

ncbi_isolation_source: Sediment samples were collected from a municipal wastewater treatment outlet located in the intertidal zone of Zhanjiang Bay; China.

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_submitter: College of Coastal Agricultural Sciences


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. MDB2-A-2

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_country: Germany

ncbi_isolation_source: Tracheal secretions

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SurvCARE


ncbi_country: Greece

ncbi_isolation_source: urinary tract infection

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater effluent sample

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Emory University


ncbi_organism_name: Salmonella sp. NW645

ncbi_submitter: Sichuan University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: MEDICAL RESEARCH AND DEVELOPMENT ARGE  BIYOTEKNOLOJI SANAYI VE TICARET LTD STI


ncbi_organism_name: Bacillus cereus group sp. MYBK48-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK48-1


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium RIFOXYA2_FULL_44_9


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Clostridium sp. MT-132

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: naresuan university


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfurellales bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: northern Gulf of Mexico

ncbi_organism_name: Betaproteobacteria bacterium LSUCC0117

ncbi_submitter: University of Southern California


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Anaerolineales bacterium UBA832

ncbi_submitter: University of Queensland


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Marinilabiliales bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 32 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: mouse gut

ncbi_submitter: National Microbiology Laboratory at Guelph


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pseudomonas mandelii 36MFCvi1.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alteromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: resected aortic valve tissue

ncbi_organism_name: Legionella cardiaca

ncbi_submitter: northwestern university


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG13626

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia

ncbi_isolation_source: Feces

ncbi_organism_name: Bacteroidales bacterium M6

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M6


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_submitter: IZSLER

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: Hawaii

ncbi_organism_name: Thalassotalea euphylliae

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: Maniniholo cave; near Haena; Kauai; HI

ncbi_isolation_source: near cave entrance; scraping from roof of cave

ncbi_organism_name: Aphanocapsa lilacina HA4352-LM1

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Salmonella sp. 741265127_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Thailand: Yasothon

ncbi_isolation_source: Rectal Swab

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Universiteit Antwerpen


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC085942

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Ferruginibacter paludis

ncbi_strain_identifiers: CECT 8366

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13331

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Flathead Lake; MT

ncbi_isolation_source: lake water; P+N amendment

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Montana


ncbi_country: USA: MD

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio parahaemolyticus


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_organism_name: Streptomyces sp. NPDC006450


ncbi_country: China: Guangdong; Guangzhou

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acididesulfobacter;s__Candidatus Acididesulfobacter guangdongensis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_country: United Kingdom: Island of Anglesey; North Wales

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_submitter: Massey University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 1,9,12,46,27:l,w:e,n,x


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Capsulimonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Shenzhen

ncbi_organism_name: Pseudidiomarina sediminum

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: Nasal Swab

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: ANSES


ncbi_isolation_source: Wound

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Streptococcus pyogenes ABC020026287

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cyanobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: unknown

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: UNIVERSITY OF JENA


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W55446


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Paenisporosarcina sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Weissella paramesenteroides ATCC 33313

ncbi_submitter: Baylor College of Medicine


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: South Africa

ncbi_isolation_source: skin; tongue

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Enterococcus faecium ERV26

ncbi_submitter: Washington University


ncbi_country: Indian Ocean

ncbi_isolation_source: Indian Monsoon Gyres Province

ncbi_organism_name: Spongiibacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 320


ncbi_organism_name: Microbacterium jejuense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Eubacterium sp. 45_250

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 45_250


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: Centre for Microbiome Research