ncbi_country: Australia: Brisbane

ncbi_isolation_source: bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Queensland university of technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_assembly_name: Rumen uncultured genome RUG11540

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_level: Contig

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Texas at Austin


gtdb_representative: t

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces sp. NRRL WC-3702

ncbi_strain_identifiers: NRRL WC-3702

ncbi_submitter: University of Illinois


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hackensack-Meridian Health Center for Discovery and Innovation


ncbi_isolation_source: Yeshanjun pickle

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Tanzania: Kigoma

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea:Seoul

ncbi_isolation_source: Internal organs of chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Konkuk university


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: USA: North Carolina; Salisbury

ncbi_isolation_source: soil

ncbi_organism_name: Acidovorax carolinensis

ncbi_submitter: University of North Carolina - Chapel Hill


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Region Zealand


ncbi_country: USA: Austin

ncbi_organism_name: Gilliamella sp. Gris1-4

ncbi_submitter: University of Texas at Austin


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Sphingomonadales bacterium UBA6157

ncbi_submitter: University of Queensland


ncbi_organism_name: Catenibacterium sp. co_0103


ncbi_organism_name: Aeromonas sp. R6-2

ncbi_submitter: Hangzhou CDC


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Japan: Gifu

ncbi_isolation_source: soil from a swine farm

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: Gifu University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Angustibacter sp. Root456

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Candidatus Dormibacteraceae bacterium

ncbi_submitter: Monash University

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__Candidatus Dormibacteraceae;x__unclassified Candidatus Dormibacteraceae;s__Candidatus Dormibacteraceae bacterium


ncbi_country: USA: Huntley; MT

ncbi_isolation_source: red Pontiac potato

ncbi_organism_name: Streptomyces scabiei

ncbi_strain_identifiers: NRRL B-2796

ncbi_submitter: USDA/ARS/NCAUR


ncbi_country: China: Yunnan; Kunming

ncbi_isolation_source: respiratory tract

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Japan:Ibaraki; Tsukuba city

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella lacticifex

ncbi_submitter: Advanced Analysis Center, National Agriculture and Food Research Organization


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Brevibacterium sediminis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa MSH-10

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio mimicus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: Yongin-si

ncbi_isolation_source: river water

ncbi_organism_name: Brevundimonas fluminis

ncbi_refseq_category: reference genome

ncbi_submitter: Hankyong National University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0777


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7205

ncbi_submitter: University of Queensland


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: Universidad Complutense de Madrid


ncbi_organism_name: Streptosporangium sp. NPDC051023


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: DOE JGI


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Sulfuriferula sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Xanthomonas citri pv. vignicola

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. vignicola

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Agrobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter sp.


ncbi_isolate: metabat2_XCR1_HET_7840_bwa.7 MAG

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_strain_identifiers: metabat2_XCR1_HET_7840_bwa.7 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_isolation_source: tissue

ncbi_organism_name: Serratia marcescens BIDMC 81

ncbi_strain_identifiers: BIDMC 81


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Japan: Kagoshima

ncbi_organism_name: Pseudomonas syringae pv. theae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. theae


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jinhua

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: China Agricultural University


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Zhejiang

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: marine sediment

ncbi_organism_name: Candidatus Zipacnadia bacterium

ncbi_submitter: University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;c__Candidatus Zipacnadia;x__unclassified Candidatus Zipacnadia;s__Candidatus Zipacnadia bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SBM Research Institute of Rospotrebnadzor


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: University of Queensland


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pannonibacter phragmitetus


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany

ncbi_isolation_source: Surface patient room

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: China:Shanxi qinshui

ncbi_isolation_source: Soil of Dajian Mountain Forest Farm

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Shigella boydii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: Pig carcasses

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Synechococcus sp. N5

ncbi_submitter: UNIVERSITY OF SOUTHERN CALIFORNIA


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Sphingobacterium sp. LZ4M12

ncbi_submitter: Southwest Medical University


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_isolate: metabat2_pooled_hifiasm.1589 MAG

ncbi_strain_identifiers: metabat2_pooled_hifiasm.1589 MAG

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: Pseudenterobacter timonensis

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bradymonadaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Clostridia bacterium


ncbi_country: USA: Maryland

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus sputorum

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: SEMIA 4072

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA

ncbi_isolation_source: lab variant

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Auburn University


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11332

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: sewage

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sp. AF36-4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: caecum

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf097

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


gtdb_type_species_of_genus: t

ncbi_assembly_name: IMG-taxon 2617270827 annotated assembly

ncbi_organism_name: Litoreibacter albidus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Oceanobacter sp.

ncbi_submitter: EMG


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:Catalina Bird Rock; California

ncbi_isolation_source: kelp frond

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Flinders Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 99626;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Ochrobactrum sp. GPK 3

ncbi_strain_identifiers: GPK 3

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_country: USA: MD

ncbi_isolation_source: Sesame Seed

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Germany

ncbi_isolation_source: Anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: Germany: Baiersbronn / Baden-Wuerttem; grassy area; close to T1

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00378

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Sysuimicrobiaceae;g__Candidatus Tepidifontimicrobium;s__Candidatus Tepidifontimicrobium thermophilum


ncbi_organism_name: Psychrobacter sp. AOP22-C1-30

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Home

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Methylophaga thiooxydans


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: South Korea: Cheonan Province

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudescherichia vulneris

ncbi_submitter: INHA University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Universidad de Concepcion


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: air in the chapel  Virgikapelle

ncbi_organism_name: Microbacterium aerolatum

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Sneathia sp.


ncbi_country: China: Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Slovenia

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Israel: Gulf of Aqaba

ncbi_isolation_source: Trichodesmium bloom in seawater

ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Hebrew University of Jerusalem


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river/lake

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Macrococcus epidermidis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-679-M23

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Sulfitobacter pontiacus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Nordella sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_country: Uruguay

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Arthrobacter sp. UNC362MFTsu5.1

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Hong Kong

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: HKU


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Iowa


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangxi

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oligoflexia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: Faeces


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_isolation_source: collective feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured Gemmatimonas sp.


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bacilli bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: cold seep

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5496

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5496


ncbi_country: China: Harbin

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Simonsiella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Canada

ncbi_organism_name: Allofustis seminis DSM 15817

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Carnobacteriaceae;g__Allofustis;s__Allofustis seminis;x__Allofustis seminis DSM 15817


ncbi_assembly_name: Rumen uncultured genome RUG10662

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli O6:K2:H1

ncbi_submitter: Roskilde University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolate: FAECES

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: Campylobacter jejuni;FAECES

ncbi_submitter: LSHTM


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Worthington


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-174

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_strain_identifiers: new MAG-174

ncbi_submitter: Micoorganism


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Staphylococcus epidermidis VCU071

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Streptomyces sp. NPDC002012

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter modestus

ncbi_submitter: University of Technology Sydney


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Synechococcus sp. MED-G71

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Bartonella washoeensis Sb944nv

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterocloster bolteae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Guangdong

ncbi_isolation_source: Gut

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium sp. RHZ01

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Chile: San Carlos

ncbi_isolation_source: Cankerous wood

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: INIA Rayentue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: Australia

ncbi_isolation_source: chicken rince

ncbi_submitter: CSIRO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Singapore


ncbi_country: Ireland: Dungarvan

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_country: Hungary: Bugyi

ncbi_isolation_source: enrichment culture AER2 inoculated with biofilm which develop in hydrocarbon contaminated groundwater; aerobic enrichment culture amended with 20 ppm diesel fuel/ crude oil mixture (3:2; v/v) as carbon and energy sources

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Szent Istvan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_country: Taiwan

ncbi_isolation_source: shallow sea hydrothermal fluids

ncbi_organism_name: Thermovibrio sp.

ncbi_submitter: Ministry of Natural Resources, Third Institute of Oceanography


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Nebraska

ncbi_isolation_source: potato tuber

ncbi_organism_name: Streptomyces caniscabiei

ncbi_submitter: USDA ARS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Yersinia pestis KIM D27

ncbi_strain_identifiers: KIM D27

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;x__Yersinia pestis KIM10+;x__Yersinia pestis KIM D27


ncbi_country: Brazil: Carolina; Maranhao

ncbi_isolate: Desfum bin_11_GBBB05

ncbi_isolation_source: non-axenic (unialgal) sample in BG-11 medium

ncbi_organism_name: Phycisphaerales bacterium

ncbi_strain_identifiers: Desfum bin_11_GBBB05

ncbi_submitter: Instituto de Quimica


ncbi_assembly_level: Chromosome

ncbi_country: Pakistan: Sheikh Zaid Hospital; Lahore

ncbi_organism_name: Escherichia coli O157:H7

ncbi_strain_identifiers: Sakai

ncbi_submitter: Rehman Medical Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia sp. AF19-34

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_country: France

ncbi_isolation_source: Bovine adult

ncbi_organism_name: Escherichia coli

ncbi_submitter: University College Dublin


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Finland: Olkiluoto Island

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulforudis sp.

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Candidatus Desulforudaceae;g__Candidatus Desulforudis;x__unclassified Candidatus Desulforudis;s__Desulforudis sp.


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S094_02810

ncbi_submitter: Zhejiang University


ncbi_organism_name: Hydrogenimonas leucolamina

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Science, Hokkaido University


ncbi_country: USA

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: kaohsiung medical university


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Ares Genetics


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Qinghai province

ncbi_organism_name: Streptococcus sp. sy018

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Enterococcus sp. C95

ncbi_submitter: Northwest A & F University


ncbi_assembly_name: Rumen uncultured genome RUG11316

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus sp. C10


ncbi_country: USA: Unknown

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: China: Hangzhou

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Hong Kong

ncbi_isolation_source: biofilm full-scale rotating biological contactor (RBC)

ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Thailand

ncbi_isolation_source: soil

ncbi_organism_name: Actinacidiphila acididurans

ncbi_submitter: KASETSART UNIVERSITY


ncbi_organism_name: Providencia rettgeri


ncbi_country: Germany: Hainich-Duen

ncbi_isolation_source: leaf surface

ncbi_organism_name: Duganella phyllosphaerae

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Pelagibacterales bacterium CODY6

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Pelagibacterales bacterium CODY6


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_country: Gabon

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium moukalabense

ncbi_submitter: National Institute of Genetics


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Gongxiaoshe pool in Tengchong

ncbi_isolate: GXS

ncbi_isolation_source: Hot Springs

ncbi_organism_name: Armatimonadetes bacterium GXS

ncbi_strain_identifiers: GXS

ncbi_submitter: Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium GXS


ncbi_organism_name: uncultured Thermoflexus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Molecular Biology NAS Armenia


ncbi_organism_name: Kosmotogaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Lachnospiraceae bacterium SGI.256

ncbi_submitter: University of Manitoba


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Sedimentisphaerales bacterium


ncbi_organism_name: Streptomyces sp. NPDC018584

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_strain_identifiers: KCTC 3549

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Paucilactobacillus;s__Paucilactobacillus suebicus;x__Paucilactobacillus suebicus DSM 5007 = KCTC 3549


ncbi_organism_name: Kingella denitrificans

ncbi_submitter: EMG


ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: Mongolia

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14324

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: University College Cork


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S6

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Jiaxing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the Second Affiliated Hospital of Jiaxing University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: healthy toe

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Tufts University


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Saccharospirillaceae bacterium UBA7437

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Fibrobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0674

ncbi_submitter: Broad Institute


ncbi_country: USA: Minnesota

ncbi_organism_name: Neisseria cinerea

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Dalian

ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: Dalian University of Technology


ncbi_isolation_source: sediment

ncbi_organism_name: Lysobacterales bacterium


ncbi_country: USA: Tennessee

ncbi_submitter: University of Oklahoma


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-5530

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Africa: Durban

ncbi_isolation_source: urine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Sierra Leone: Freetown

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__unclassified Planctomycetota;s__Planctomycetes bacterium RIFOXYD2_FULL_41_16


ncbi_country: Australia

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Bioplatforms Australia


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Finland

ncbi_isolation_source: Blood

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: Liver abscess puncture fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Department of Laboratory Medicine


ncbi_country: India

ncbi_organism_name: Photorhabdus laumondii subsp. clarkei

ncbi_submitter: University of Neuchatel


ncbi_country: Canada: Alberta

ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: Human saliva

ncbi_organism_name: Prevotella aurantiaca

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides uniformis dnLKV2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus sp. DIV2163

ncbi_submitter: Broad Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio breoganii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudorhodobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Thailand: Phatthalung

ncbi_isolation_source: pus

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Christensenellaceae bacterium Phil1

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_submitter: University of Tulsa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ouakam


ncbi_organism_name: Staphylococcus sp. HMSC074B09

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Atlantibacter subterraneus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Kenya: Kisii

ncbi_submitter: USAMRD-A


ncbi_country: South Korea: Gyeongsangbuk-do

ncbi_isolation_source: pig

ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: Turkey: Kayseri

ncbi_organism_name: Helicobacter turcicus

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_assembly_name: freshwater MAG --- Umea2_bin-2266

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Canadian Food Inspection Agency


ncbi_isolation_source: Choana

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_strain_identifiers: ISMETT ST307 cl7

ncbi_submitter: ISMETT


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Syntrophothermus sp. DTU052

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingobacterium detergens

ncbi_submitter: FRC Kazan Scientific Center RAS


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Chiayiivirga flava

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8947

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA: NY

ncbi_isolation_source: dairy Cows

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59555F

ncbi_submitter: FDA


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Pontimonas sp.

ncbi_submitter: Academia Sinica


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: uncultured Vampirovibrio sp.


ncbi_organism_name: Campylobacter coli

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Salmonella sp. fjx14s1

ncbi_submitter: Food safety


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock biobioreactor

ncbi_organism_name: Chloroflexi bacterium 44-23

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium 44-23


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Tennessee


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: HOE Legacy IIB net trap

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Micromonospora chersina

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Canada: Ontario

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: University of Guelph


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Comamonadaceae bacterium UBA2121

ncbi_submitter: University of Queensland


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Portugal

ncbi_isolation_source: haemoculture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade Catolica Portuguesa


ncbi_country: Italy

ncbi_organism_name: Arthrobacter sp. AG258

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Australia: Magnetic Island; QLD


ncbi_organism_name: Acinetobacter parvus

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13018

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jiangsu; Nanjing

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: MS

ncbi_isolation_source: Elbow wound

ncbi_organism_name: Staphylococcus aureus DAR3612

ncbi_submitter: Broad Institute


ncbi_country: USA: OK

ncbi_isolation_source: antelope feces (Antilocapra americana)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: yaan

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: USA: Louisiana

ncbi_isolation_source: Sugarcane mill mud

ncbi_organism_name: Candidatus Fermentibacter sp.

ncbi_submitter: Wells College

ncbi_taxonomy: d__Bacteria;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Fermentibacterota;c__Candidatus Fermentibacteria;o__Candidatus Fermentibacterales;f__Candidatus Fermentibacteraceae;g__Candidatus Fermentibacter;x__unclassified Candidatus Fermentibacter;s__Candidatus Fermentibacter sp.


ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Prepared meat products from retail market

ncbi_submitter: Shihezi University


ncbi_isolation_source: Colon


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_submitter: Stockholm University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: Bacillus cereus group sp. MYBK104-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK104-2


ncbi_submitter: University of South Africa


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Jiangsu

ncbi_isolation_source: Intestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Acidithiobacillus caldus SM-1

ncbi_submitter: Environmental Microbiology Research Center (EMRC)


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Sri Lanka

ncbi_isolation_source: neonatal anal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG11830

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Madurai Kamaraj University


ncbi_country: USA: Hawaii

ncbi_isolate: NT

ncbi_organism_name: Candidatus Schneideria nysicola

ncbi_strain_identifiers: NT

ncbi_submitter: University of California Merced


ncbi_country: Spain

ncbi_isolation_source: marine algae

ncbi_organism_name: Hoeflea alexandrii

ncbi_submitter: Chung-Ang university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_strain_identifiers: GBBC 3621

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Aequorivita sp.

ncbi_submitter: University of Southern California


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway

ncbi_isolation_source: raw chicken

ncbi_organism_name: Pseudomonas haemolytica

ncbi_submitter: Nofima


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Canada:Blairmore; AB

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC 01529

ncbi_submitter: McMaster University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Russia: Moscow region

ncbi_isolation_source: Dry grass and soil

ncbi_organism_name: Pimelobacter simplex

ncbi_strain_identifiers: VKM Ac-2033D

ncbi_submitter: G.K.Skryabin Institute of Biochemistry and Physiology of Microorganisms Russian Academy of Sciences


ncbi_organism_name: Vibrio sp. Vb1337

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Endomicrobium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-176-05_S1_C1

ncbi_submitter: IGS


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Mammaliicoccus lentus

ncbi_strain_identifiers: UD i2

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_country: China

ncbi_isolation_source: Procapra picticaudata

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: China CDC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Capian Sea

ncbi_organism_name: Actinobacteria bacterium casp-actino6

ncbi_submitter: University of Tehran


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Canada: Alberta

ncbi_isolation_source: necrotic leaf

ncbi_organism_name: Erwinia persicina

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M29068

ncbi_submitter: Broad Institute


ncbi_country: Sweden

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis BTB06-340


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Exiguobacterium sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__environmental samples;s__uncultured Exiguobacterium sp.


ncbi_organism_name: Paenibacillus sp. FSL R5-0766

ncbi_submitter: Penn State


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_submitter: University of Queensland


ncbi_country: Canada: Brooks

ncbi_isolation_source: Cattle feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: LETHBRIDGE RESEARCH CENTRE


ncbi_isolation_source: Gut

ncbi_strain_identifiers: Isolate-039 (Harlan)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-039 (Harlan)


ncbi_country: Turkey

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Recep Tayyip Erdogan University


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Universidad Austral de Chile


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_assembly_name: freshwater MAG --- Ja1_bin-3778

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Enterococcus casseliflavus ATCC 49996

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: uncultured Synergistaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Texas

ncbi_organism_name: Rhizobium sp. SORGH_AS_0755

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean

ncbi_isolation_source: tube of Riftia pachyptila

ncbi_organism_name: Psychrobacter sp. PSP

ncbi_strain_identifiers: PSP

ncbi_submitter: Station Biologique de Roscoff


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Spain: Mediterranean region

ncbi_isolation_source: vascular ulcer

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Connecticut

ncbi_isolation_source: Toeweb

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: The Jackson Laboratory


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: Instituto de Investigaciones Biomedicas, UNAM


ncbi_isolate: AOP35_01H_surf _bin _7

ncbi_organism_name: Luteimonas sp.

ncbi_strain_identifiers: AOP35_01H_surf _bin _7

ncbi_submitter: Genoscope


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Arachnia propionica

ncbi_submitter: EMG


ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Ruminococcus callidus


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 19ft depth

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium RBG_19FT_COMBO_42_15


ncbi_isolation_source: aquatic metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Jiangxi Medical College, Nanchang University


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_submitter: Chulalongkorn University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Russia

ncbi_isolation_source: industrial wastewater

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_country: USA

ncbi_isolation_source: Spinal fluid

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_strain_identifiers: ATCC 7901

ncbi_submitter: Menzies School of Health Research


ncbi_country: Germany

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: Poland

ncbi_organism_name: Pseudomonas veronii

ncbi_submitter: Hasselt University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom: Gloucestershire

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in a breeding trial plot

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Flammeovirgaceae bacterium

ncbi_submitter: University of Michigan


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Dabaoshan; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: South china normal university


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Bhabha Atomic Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Minho


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Hyphomonas sp. BRH_c22

ncbi_submitter: EPFL


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_country: Australia: Tasmania

ncbi_isolation_source: patient sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: La Trobe University


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Fujian

ncbi_organism_name: Shewanella zhangzhouensis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: uncultured Parasporobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_submitter: Quadram Institutte


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-2641

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Bacillus safensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Aachen

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Helmholtz-Centre for Infection Research


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus canis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Ruegeria sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Japan:Tokyo; Ome; Tama river

ncbi_isolation_source: river epilithic biofilm

ncbi_organism_name: Roseomonas fluvialis

ncbi_submitter: Biological Sciences, Tokyo Metropolitan University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Xenorhabdus bovienii str. Intermedium

ncbi_strain_identifiers: Intermedium

ncbi_submitter: UWM


ncbi_isolate: Steroidobacter sp. RBC007

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Steroidobacter sp.

ncbi_strain_identifiers: Steroidobacter sp. RBC007

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Marinobacter salsuginis

ncbi_submitter: Xiamen University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Mozambique

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Parvibaculum sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Renji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Italy: Roma

ncbi_isolation_source: Respiratory Sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pseudomonas Italian work group


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: EPFL


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Massachusetts

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Azospirillaceae bacterium

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Bacillus sp. SW14

ncbi_submitter: United Arab Emirates University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SW14


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_organism_name: uncultured Ignavibacteriales bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: anammox sludge collected from membrane bioreactor

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Water quality control, Division of Environmental Engineering, Faculty of Engineering, Department of civil engineering, Hokkaido university


ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: USA: New Pass Inlet; Sarasota; Florida

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Halomonas sp. 707D4

ncbi_submitter: University of Florida


ncbi_country: China: Henan

ncbi_isolation_source: Mobile phone

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Henan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Acinetobacter baumannii AB0057

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Aphanothece cf. minutissima CCALA 015

ncbi_submitter: Biology Centre CAS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Sphingobium yanoikuyae

ncbi_submitter: Tsinghua University


ncbi_isolation_source: Faeces


ncbi_organism_name: Candidimonas sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Rhodococcus sp. OK611

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. OK611


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland

ncbi_isolation_source: feces from wild bird

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: Candidatus Paracaedimonas acanthamoebae

ncbi_submitter: University of Virginia


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: The University of Melbourne


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerotignum lactatifermentans


ncbi_country: USA: MD

ncbi_isolation_source: Commercial cultured foods

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: USFDA


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tenuifilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. NPDC048279

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Washington University in Saint Louis