ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_level: Scaffold

ncbi_country: USA

ncbi_submitter: University of Texas at Dallas


gtdb_representative: t

ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Peru

ncbi_isolation_source: chicken swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_organism_name: Candidatus Reddybacter sp.

ncbi_submitter: University of Califronia, Santa Barbara


ncbi_country: Japan

ncbi_organism_name: Mycobacterium kiyosense

ncbi_submitter: Department of Mycobacteriology, Leprosy Research Center, National Institute of Infectious Diseases - Japan


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1497

ncbi_submitter: Broad Institute


ncbi_organism_name: Saccharopolyspora phatthalungensis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Methyloprofundus sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F36670


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Guangdong

ncbi_isolation_source: beef

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Sulfitobacter sp. NFXS29

ncbi_submitter: iBET


ncbi_organism_name: Rivularia sp. (in: cyanobacteria)

ncbi_submitter: Freie Universitat Berlin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Rivulariaceae;g__Rivularia;x__unclassified Rivularia (in: cyanobacteria);s__Rivularia sp. (in: cyanobacteria)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured OM43 clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Nitrosomonadales;x__unclassified Nitrosomonadales;x__OM43 clade;x__environmental samples;s__uncultured OM43 clade bacterium


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;s__Candidatus Collierbacteria bacterium GW2011_GWB1_44_6


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_organism_name: Variovorax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Bacteroidales bacterium UBA1374

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA1374


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Belgium

ncbi_isolation_source: leaves

ncbi_organism_name: Bacillus thuringiensis

ncbi_strain_identifiers: dipel

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Egypt: Cairo

ncbi_organism_name: Staphylococcus sp. EG-SA-23

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: CHU Arnaud de Villeneuve Montpellier


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Microbacterium sp. NPDC057658

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces cinerochromogenes


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Peking University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC001852


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


gtdb_type_species_of_genus: t

ncbi_isolation_source: feces

ncbi_organism_name: Christensenella minuta

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: France

ncbi_submitter: CHU de Bicetre


ncbi_country: USA: MN

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: well water

ncbi_organism_name: Enterobacter sp. MW07

ncbi_submitter: Shandong university


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Pacific Ocean

ncbi_isolation_source: Seaweed

ncbi_organism_name: Pseudoalteromonas luteoviolacea S4047-1

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 2

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_strain_identifiers: MAG 2

ncbi_submitter: WHOI


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Singapore

ncbi_isolation_source: rectal

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: National University of Singapore and Genome Institute of Singapore


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Blautia avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Buchnera aphidicola (Formosaphis micheliae)

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_organism_name: Sulfuricaulis sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Paraburkholderia sp. CI2

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG10863

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan

ncbi_isolation_source: freshwater spring

ncbi_organism_name: Paracoccus fontiphilus

ncbi_submitter: University of Jinan


ncbi_organism_name: Terriglobales bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hydrogenothermaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Kiel University


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-026

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: India

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: WY

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: Technical University of Denmark


ncbi_assembly_level: Chromosome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tongji University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3747

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3747


ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Haruko Takeyama Lab., Waseda University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Saari 17

ncbi_submitter: University of Helsinki


ncbi_organism_name: Pantoea agglomerans


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Micromonospora chokoriensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Dorea amylophila

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Ohio

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudarthrobacter sp. C4D7

ncbi_submitter: The Ohio State University


ncbi_assembly_name: IMG-taxon 2671180229 annotated assembly

ncbi_organism_name: Acinetobacter boissieri

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Florida


ncbi_country: Norway: Byfjorden; Bergen

ncbi_isolation_source: biofilm scrapped from cow tibia surface after nine month of incubation underwater in a fjord

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: ProBone


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: Weizmann Institute of Science


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Jyvaskyla


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cu231

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Daksum; Jammu and Kashmir

ncbi_organism_name: Clostridium perfringens

ncbi_strain_identifiers: Type D

ncbi_submitter: Sher-e-Kashmir University of Agricultural Sciences and Technology


ncbi_country: Thailand

ncbi_isolation_source: other

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Japan: Tokyo

ncbi_isolation_source: sink

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Tokyo Medical and Dental University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Asaia lannensis NBRC 102526

ncbi_submitter: Tokyo University of Agriculture


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Africa: Northern Cape

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Netherlands

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: uncultured Holophagae bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Hippea sp.


ncbi_isolate: SPRUCE 194

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 194

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ardenticatenales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Icahn School of Medicine


ncbi_country: South Korea

ncbi_isolation_source: sesame field

ncbi_organism_name: Bacillus thuringiensis serovar kim

ncbi_strain_identifiers: BGSC 4BP1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kim


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Actinotignum urinale

ncbi_submitter: Loyola University Chicago


ncbi_assembly_name: freshwater MAG --- AM-2014-D1_bin-415

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_country: USA

ncbi_isolate: Camp

ncbi_isolation_source: isolate obtained from Campbell s Soup Company

ncbi_organism_name: Clostridium sporogenes

ncbi_strain_identifiers: Camp;PA 3679

ncbi_submitter: Illinois Institute of Technology


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Poland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Public Health NIH - NRI


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Ulvibacter sp.

ncbi_submitter: Palmer LTER


ncbi_isolation_source: post mortem sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_country: Malaysia: Selangor

ncbi_isolation_source: Water from farm

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Malaya


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: Pork Chop

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: oral; gingival crevices

ncbi_organism_name: Segatella buccae ATCC 33574

ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Segatella;s__Segatella buccae;x__Segatella buccae ATCC 33574


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Legionella genomosp. 1

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Anaerobutyricum hallii


ncbi_country: Nepal: Gokarna

ncbi_isolation_source: Wild animal


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Kentucky

ncbi_organism_name: Prescottella equi

ncbi_submitter: The Roslin Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coriobacteriales bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Pantoea sp. UBA5035

ncbi_submitter: University of Queensland


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: uncultured Pleurocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: poultry meat product

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_country: China: Henan

ncbi_isolation_source: liver

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Clostridiales bacterium UBA3733


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: tomato pulp

ncbi_organism_name: Lentilactobacillus buchneri DSM 20057

ncbi_submitter: Shanghai Majorbio


ncbi_country: Finland: Helsinki

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: Helsinki University


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Geobacterales bacterium

ncbi_submitter: Rutgers University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: China: chongqing

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MDR-CQA

ncbi_submitter: Chongqing People's Hospital


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Morganella morganii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Carboxylicivirga sp.


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Solirubrobacteraceae bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EBI


ncbi_country: Brazil

ncbi_isolation_source: pecked egg caecum

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Norway: Bergen

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_strain_identifiers: G

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: South Korea

ncbi_isolation_source: leaf vegetable

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: National Institute of Agricultural Science


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA199

ncbi_submitter: Broad Institute


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: MS

ncbi_isolation_source: Sputum

ncbi_organism_name: Staphylococcus aureus DAR3599


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Nonomuraea jabiensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nocardia pseudovaccinii NBRC 100343

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: China: Zhejiang

ncbi_isolation_source: raw milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Ethiopia: Oromiya; East Wellega; Sibu sire

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: environmental swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo


ncbi_country: Thailand: Ubon

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: AAFC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_country: Greenland: Ikka Fjord

ncbi_isolation_source: Ikaite tufa columns

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cytophagaceae;g__Rhodonellum;s__Rhodonellum psychrophilum;x__Rhodonellum psychrophilum GCM71 = DSM 17998


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Marinilabiliaceae bacterium JC017

ncbi_submitter: Ocean University of China


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Ventrimonas sp.


ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: Candidatus Electronema sp. JM

ncbi_strain_identifiers: JM

ncbi_submitter: Guangdong University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfobulbia;o__Desulfobulbales;f__Desulfobulbaceae;g__Candidatus Electronema;x__unclassified Candidatus Electronema;s__Candidatus Electronema sp. JM


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Microbacterium laevaniformans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Brazil: Fortaleza

ncbi_submitter: LNCC


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-917

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Research Institute for Tropical Medicine


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_submitter: FDA/CFSAN


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: McGill University


ncbi_assembly_name: IMG-taxon 2622736599 annotated assembly

ncbi_organism_name: Chitinophaga rupis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Porcine

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Loc090116-8m_bin-1654

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMBL-EBI


ncbi_country: USA

ncbi_isolation_source: Air filter

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: HBSJRP 18-3.6

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Japan

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium breve MCC 0121

ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Chryseobacterium sp. MIQD13

ncbi_submitter: Laboratory of Microbiology, Chemistry Institute, UNAM


ncbi_submitter: Monash University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA7895

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA7895


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPMP 720

ncbi_submitter: University of Pretoria


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Xiamen University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Zhejiang

ncbi_isolation_source: aerobic granular sludge reactor

ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: nasopharynx


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Heyndrickxia coagulans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: the seqafrica consortium


ncbi_country: Australia

ncbi_isolation_source: sewage from residential aged care facility

ncbi_organism_name: Stenotrophomonas sp. Sm3147

ncbi_submitter: Medical Research Future Fund


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_country: China: Anhui

ncbi_isolation_source: Pleural effusion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Tang lab


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: cloaca

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: P16 CL A21

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia barduliensis

ncbi_submitter: Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bordetella parapertussis


ncbi_organism_name: Undibacterium pigrum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Anaerofustis butyriciformans

ncbi_submitter: 1. State Key Laboratory of Microbial Technology


ncbi_organism_name: Limosilactobacillus oris


ncbi_country: USA: Massachussets

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South American MRSA Consortium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG13877

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD15

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolate: YS river water

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: YS river water

ncbi_submitter: Laboratory of Evolutionary Bioinformatics, SNU


ncbi_country: Kenya

ncbi_organism_name: Bacteroidales bacterium UBA6366

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6366


ncbi_country: USA: North Carolina

ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_country: China:Foshan City; Guangdong Province

ncbi_isolation_source: stool

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Houston; TX

ncbi_isolation_source: parent strain RU2 evolved under selective conditions; BHI evolved gen 950 Population GS

ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: RU2 BHI23

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: China: Luzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_country: Thailand: Nakhon Ratchasima

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Amsterdam UMC, University of Amsterdam


ncbi_country: Brazil

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: China: Zhejiang

ncbi_submitter: China Agricultural University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Tepidisphaerales bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: The Affiliated Wenling Hospital


ncbi_organism_name: Candidatus Avalokitesvara rifleensis

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Bathyanammoxibiaceae;g__Candidatus Avalokitesvara;s__Candidatus Avalokitesvara rifleensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Bathyanammoxibiaceae;g__Candidatus Avalokitesvara;s__Candidatus Avalokitesvara rifleensis


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: UIUC


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Human feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Aureibaculum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospinia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Tibet

ncbi_isolation_source: hot spring

ncbi_organism_name: Caldimonas tepidiphila

ncbi_submitter: Yunnan University


ncbi_country: Japan

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Methylobacterium sp. Leaf399

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Altai region

ncbi_isolation_source: root nodule

ncbi_organism_name: Devosia sp. A8/3-2

ncbi_submitter: ARRIAM


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0289R

ncbi_submitter: Broad Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: patient

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_organism_name: Listeria monocytogenes R479a

ncbi_submitter: VETMEDVIENNA


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_organism_name: Mesorhizobium caraganae CCBAU 01502

ncbi_strain_identifiers: CCBAU 01502

ncbi_submitter: China Agriculture University


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Washington


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Rhodobacteraceae bacterium PD-2

ncbi_submitter: First Institute of Oceanography, SOA


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae UCI 68

ncbi_strain_identifiers: UCI 68

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 68


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: pharynx

ncbi_organism_name: Neisseria meningitidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: Turkmenistan: Askabat

ncbi_isolation_source: Desert soil

ncbi_organism_name: Saccharopolyspora terrae

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Lactimicrobium massiliense

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_strain_identifiers: R866;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: maybe soil

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: USA: Texas; Dallas

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: Water column of Rimov Reservoir; Czechia

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: ICU

ncbi_organism_name: Staphylococcus aureus M0273

ncbi_submitter: Broad Institute


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Enterobacter cloacae


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: UZ Brussel


ncbi_organism_name: Mesorhizobium sp. L2C084A000

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City university of Hong Kong


ncbi_country: Portugal: Grandola; Herdade da Barroca da Serra

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universidade do Minho


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo AC


ncbi_isolation_source: marine

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Ngtc NS 11

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Enterococcus hulanensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Thailand: north east region

ncbi_isolation_source: salted fermented fish

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chulalongkorn university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Germany

ncbi_isolation_source: Monkey

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 11571

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. AZ 057


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Variovorax sp. V116

ncbi_submitter: Kyoto University


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: Rumen uncultured genome RUG11226

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: wastewater

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: [Clostridium] symbiosum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: lava rock from Solomon Sea

ncbi_organism_name: Pseudoalteromonas luteoviolacea S2607

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Japan

ncbi_isolation_source: marine hydrothermal environment

ncbi_organism_name: Staphylospora marina

ncbi_strain_identifiers: SCSIO 07575

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: University of Southern California


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_isolate: Fecal samples

ncbi_isolation_source: PAR

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_organism_name: Mongoliibacter ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: University of East Anglia


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: UIUC


ncbi_organism_name: Kerstersia similis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Enterobacter cloacae complex sp.6700005

ncbi_submitter: Tel Aviv Sourasky Medical Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.6700005


ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3933

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Zetaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium 4484_100


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- F14_bin-0604

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_country: Spain: Huelva

ncbi_isolation_source: Fish farm

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_country: USA: Miami

ncbi_isolation_source: marine sediment

ncbi_organism_name: Cellulosimicrobium sp. CUA-896

ncbi_submitter: Scripps Institution of Oceanography, UCSD


ncbi_country: USA: Carson; CA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Proteobacteria bacterium UBA2363

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium UBA2363


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: unknown

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Leshan; Sichuan

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Nigeria

ncbi_isolation_source: cattle stool (Bos taurus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 154 (4-5636698)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 154 (4-5636698)


ncbi_organism_name: Brucella abortus 03-4923-239-D


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: urine

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_country: Kazakhstan: Almaty

ncbi_organism_name: Citrobacter koseri

ncbi_strain_identifiers: SCAID URN1-2019

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Norway

ncbi_strain_identifiers: St. Olav157

ncbi_submitter: Norwegian University of Science and Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_submitter: University of Pretoria


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: USA: Georgia

ncbi_organism_name: Rouxiella badensis

ncbi_submitter: University of Georgia


ncbi_organism_name: Pseudomonas syringae pv. tomato

ncbi_strain_identifiers: delta VI

ncbi_submitter: UCSF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Beilun estuary national nature reserve; Guangxi Province

ncbi_isolation_source: mangrove wetland sediment

ncbi_organism_name: Thalassotalea mangrovi

ncbi_submitter: Institute of Applied and Environmental Microbiology


ncbi_country: USA: Maine

ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: IL

ncbi_isolation_source: high protein dispersibility index (PDI) flour

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli 3-475-03_S4_C2

ncbi_submitter: IGS


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Fastidiosipila sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: Nakabusa Onsen; Nagano Prefecture

ncbi_isolation_source: hot spring Cone Pool 2

ncbi_organism_name: Chloracidobacterium sp. CP2_5A

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: India

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: Rivularia sp. (in: cyanobacteria)

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Rivulariaceae;g__Rivularia;x__unclassified Rivularia (in: cyanobacteria);s__Rivularia sp. (in: cyanobacteria)


ncbi_organism_name: Enterobacter vonholyi

ncbi_submitter: University of Zurich


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-351

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_strain_identifiers: new MAG-351

ncbi_submitter: Micoorganism


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium CAG:25

ncbi_submitter: DTU


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cepheid


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: water

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Jiangnan University


ncbi_organism_name: Gemella haemolysans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Germany: Eilenburg

ncbi_isolation_source: active sludge of wastewater treatment plant

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Helmholtz Center for Environmental Research -UFZ


ncbi_assembly_name: IMG-taxon 2593339216 annotated assembly

ncbi_organism_name: Lachnospiraceae bacterium C10

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Guyparkeria sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland: Basel

ncbi_isolation_source: Tap water/shower

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Firmicutes bacterium UBA5759

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5759


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Ignavibacterium album

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Flavipsychrobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Megasphaera paucivorans

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Bacteroides caccae


ncbi_isolation_source: cold seep

ncbi_organism_name: Mycoplasmatota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Iamiaceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Micavibrio sp. UBA1968


ncbi_country: USA:Wyoming; Yellowstone National Park; Bouder Geyser hot spring

ncbi_isolation_source: alkaline hot spring microbial mat

ncbi_organism_name: Chloroflexus sp.

ncbi_submitter: University of Minnesota


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: human tissue

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: ukhsa


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Brevundimonas diminuta


ncbi_country: Canada: Ontario

ncbi_isolation_source: meat

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 08-7374


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- MJ110629A_bin-118

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Anderseniibacteriota;x__unclassified Candidatus Anderseniibacteriota;s__Candidatus Andersenbacteria bacterium RIFCSPHIGHO2_01_FULL_46_36


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eikenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Roseburia sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Erciyes University


ncbi_isolate: wNeo

ncbi_isolation_source: total DNA from 20 embryos

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wNeo

ncbi_submitter: MRC-UNIVERSITY OF GLASGOW CENTRE FOR VIRUS RESEARCH


ncbi_country: Australia

ncbi_isolation_source: Troups Creek Wetland

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Monash University


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Candidatus Peribacterales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__unclassified Candidatus Peribacterales;s__Candidatus Peribacterales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: USA: NY; New York City

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Altererythrobacter sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: UPMP 2011

ncbi_submitter: University of Pretoria


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Zurich


ncbi_country: USA: MD

ncbi_organism_name: Shigella flexneri

ncbi_strain_identifiers: DMB SH20026

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_organism_name: Yersinia kristensenii

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: JCVI


ncbi_country: Japan

ncbi_isolation_source: sponge

ncbi_organism_name: Bosea sp. ANAM02

ncbi_submitter: Department of Bacteriology, Graduate School of Medicine, Osaka City University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. ANAM02


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides fragilis str. 1007-1-F #10

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 1007-1-F #10


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: EMG


ncbi_country: Argentina: Rosario

ncbi_isolation_source: blood

ncbi_submitter: Universidad El Bosque


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_organism_name: Acinetobacter baumannii 44298_1

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Scatolibacter rhodanostii

ncbi_submitter: URMITE


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Masan National Tuberculosis Hospital


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Sterolibacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_assembly_name: freshwater MAG --- Umea_bin-04000

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Malaysia

ncbi_isolation_source: Pus

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Taiwan: Taoyuan

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: France

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris-Sud


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Food - processed meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Primorskyibacter sedentarius

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_isolation_source: kefir

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: SysMilk


ncbi_country: USA: Prineville; Oregon

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Retail Deli

ncbi_submitter: Cornell University


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Lodi; Wisconsin

ncbi_organism_name: Streptomyces sp. col6


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of KwaZulu Natal


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_53


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: University of Konstanz


ncbi_country: Canada: Station Biologique des Laurentides (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. J-048

ncbi_submitter: Universite du Quebec a Montreal


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_organism_name: Clostridium puniceum

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Nitrospirales bacterium


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: leg wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA:St. Louis

ncbi_isolation_source: peritoneal fluid

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NCTR/US FDA