ncbi_country: USA:New York; CentralHarlem

ncbi_isolation_source: nasal


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Greenland: Baffin Bay

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: surface marine sediments

ncbi_organism_name: Neptunomonas sp.

ncbi_submitter: University of Vienna


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Nitratiruptor sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Monash University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: China Pharmaceutical University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Technische Universiteit Delft


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: New Hampshire Seacoast; Odiorne Point State park

ncbi_isolation_source: foot of a periwinkle

ncbi_organism_name: Pseudoalteromonas arctica

ncbi_submitter: New England College


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hunan; Huangshaping

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: [Clostridium] scindens

ncbi_submitter: EMG


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Leucobacter tardus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_organism_name: Nautiliaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter venetianus

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Germany

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_country: China: Huzhou

ncbi_isolation_source: soil

ncbi_organism_name: Delftia tsuruhatensis

ncbi_submitter: School of Environment and Resources


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Paraburkholderia ginsengisoli

ncbi_refseq_category: reference genome

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfobacteraceae bacterium UBA4064

ncbi_submitter: University of Queensland


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares Swab

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Caldifermentibacillus hisashii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Italy: Apulia

ncbi_isolation_source: blood culture

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Chile: Yungay; Atacama Desert

ncbi_isolation_source: Yungay Desert Soil Below Boulder

ncbi_organism_name: Rubrobacter sp.

ncbi_submitter: University of Duisburg-Essen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Ligilactobacillus animalis


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NPDC019507

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3416

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Universidad de Leon


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Xenorhabdus khoisanae

ncbi_submitter: University of Neuchatel


ncbi_country: Belgium

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Clemson University


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: internal stem tissue

ncbi_organism_name: Pseudomonas libanensis

ncbi_strain_identifiers: RIT-PI-g

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_country: Oman

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Achromobacter xylosoxidans


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Rubrobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: Marivivens marinus

ncbi_submitter: Korean Environmental Microorganism Resources Center


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: clinical sample from eye infection

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: Rumen uncultured genome RUG11082

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Taiwan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: Viet Nam: Nam Dinh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Australia: Queensland

ncbi_isolation_source: Layer chicken liver; farm

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Anhui

ncbi_isolation_source: aquatic product

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Synechococcaceae bacterium Bin_79_3

ncbi_submitter: University of Ottawa


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Alberta


ncbi_isolation_source: Synovial Fluid Right ELBOW BURSA

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: human gut

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine

ncbi_organism_name: Polaribacter sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_country: Poland: Radom

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Thiomargarita sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: Endotracheal

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: Australia: WA; Oasis Farms

ncbi_organism_name: Mesorhizobium sp. WSM4906

ncbi_submitter: Murdoch University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Pseudoalteromonas sp. TB13

ncbi_submitter: University of Florence


ncbi_organism_name: Tepidimonas sp.

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Tepidimonas;x__unclassified Tepidimonas;s__Tepidimonas sp.


ncbi_country: China: Binhai; Tianjin

ncbi_isolation_source: saline alkaline soil

ncbi_organism_name: Fodinibius salipaludis

ncbi_submitter: Institute of Agricultural c and Regional Planning, Chinese Academy of Agricultural Sciences


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Chile

ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: Universidad Andres Bello


ncbi_country: Norway

ncbi_organism_name: Escherichia coli

ncbi_submitter: St. Olav University Hospital


ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: EMG


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Algimonas arctica

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Human vagina

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: Lactobacillus jensenii


ncbi_assembly_level: Chromosome

ncbi_country: USA: Ohio; Garrettsville

ncbi_isolation_source: Petunia rhizosphere root

ncbi_organism_name: Pedobacter sp. G11

ncbi_submitter: Geneva College


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Candidatus Vogelbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;x__unclassified Candidatus Vogelbacteria;s__Candidatus Vogelbacteria bacterium


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0081R

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: EXCALIBUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Bacteroides gallinaceum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Canada: Prince Edward Island

ncbi_isolation_source: part of plant

ncbi_organism_name: Streptomyces scabiei

ncbi_strain_identifiers: LBUM 1481

ncbi_submitter: Universite de Moncton


ncbi_country: Ireland

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Paraburkholderia sp. J67

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Massilia sp. CFBP9012

ncbi_submitter: INRAE


ncbi_country: India: Punjab; Ludhiana; Sheikhdaulat

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


gtdb_type_species_of_genus: t

ncbi_country: China: Guangzhou

ncbi_organism_name: Pyruvatibacter mobilis

ncbi_submitter: Guangxi University


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Cytobacillus kochii

ncbi_submitter: marine college, shandong university


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lajia lagoon

ncbi_isolation_source: steppe soil[ENVO:00005777]|soil organic matter[ENVO:04000008]

ncbi_organism_name: Streptomyces sp. ISL-112

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Gambia

ncbi_isolation_source: Vagina

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UTHSC/McGovern Medical School


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: EPFL


ncbi_isolate: SPRUCE 453

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 453

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospira pectinoschiza


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: Tamil Nadu Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Norddeutsches Zentrum für Mikrobielle Genomforschung


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Kansas State University


ncbi_assembly_name: Rumen uncultured genome RUG14252

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Gothenborg

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: Belarus: Mogilev

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_country: USA: Chapel Hill; NC

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_assembly_name: freshwater MAG --- KR3_bin-1063

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA90

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: chu de bordeaux


ncbi_isolation_source: Brain

ncbi_organism_name: Mycoplasmopsis arginini

ncbi_submitter: SC


ncbi_organism_name: Brochothrix thermosphacta

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bacillus amyloliquefaciens IT-45

ncbi_submitter: Institut Rosell Lallemand, Inc.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens;x__Bacillus amyloliquefaciens IT-45


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Porphyromonadaceae bacterium UBA2720

ncbi_submitter: University of Queensland


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Finland

ncbi_isolation_source: normally sterile site

ncbi_submitter: Houston Methodist Research Institute


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Porphyrobacter sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Hoylesella timonensis

ncbi_submitter: EMG


ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: Rutgers University


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: CAU


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Roseitalea porphyridii

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Bilophila sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Jinan

ncbi_isolation_source: urine

ncbi_submitter: University College London (UCL)


ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: HPB 394

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_isolation_source: rock

ncbi_organism_name: Bryobacter sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG12362

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Nocardioides salarius

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces ruber

ncbi_strain_identifiers: NRRL B-1661

ncbi_submitter: University of Illinois


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: USA: Gull lake; MI

ncbi_isolation_source: lake water

ncbi_organism_name: Asticcacaulis sp. AC402

ncbi_submitter: Indiana University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab veterinary clinic

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Algibacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Academia Sinica


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: plant rhizosphere

ncbi_organism_name: Pseudomonas hefeiensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: bioreactor

ncbi_organism_name: Mesotoga sp. UBA5557

ncbi_submitter: University of Queensland


ncbi_organism_name: Providencia vermicola

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus str. MIT 0917

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 0917


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Cornell University


ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus capitis subsp. urealyticus

ncbi_submitter: Imperial College London


ncbi_country: Colombia

ncbi_isolation_source: environmental

ncbi_organism_name: Pseudomonas aeruginosa M8A.4

ncbi_submitter: Broad Institute


ncbi_country: Israel: Alexander River estuary

ncbi_isolation_source: Stream water

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Corynebacterium amycolatum SK46

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA6940


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Segatella copri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 136706

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Atlantic Ocean

ncbi_isolation_source: escal light organ

ncbi_organism_name: Candidatus Enterovibrio altilux

ncbi_submitter: DEEPEND Consortium


ncbi_country: USA: Metropolitan Atlanta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA14373


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Freie Universitaet Berlin


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: University of California Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Pseudomonas sp. nanlin1

ncbi_submitter: Nanjing Forestry University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Gemmiger qucibialis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Streptomyces sp. NPDC127084

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Institute of Virology, Vaccines and Sera "Torlak"


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Isosphaeraceae bacterium


ncbi_organism_name: Streptomyces pseudogriseolus


ncbi_organism_name: uncultured Sphingosinicella sp.


ncbi_isolate: AOP25_B1_surf _bin _8

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP25_B1_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfurirhabdus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: cocoon mucus of kanamycin treated earthworm

ncbi_organism_name: Rhizobium sp.

ncbi_submitter: Aarhus University


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Ruegeria sp.

ncbi_submitter: University of Connecticut


ncbi_country: USA: Chicago

ncbi_isolation_source: bloodstream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Seafood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter sp. RHBSTW-00976

ncbi_submitter: The REHAB Consortium


ncbi_country: Estonia

ncbi_isolation_source: wound biopsy

ncbi_submitter: University of Tartu


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: INS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Dickeya sp. DW 0440

ncbi_submitter: James Hutton Institute


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Proteon Pharmaceuticals


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella grimontii


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: ocular swab

ncbi_organism_name: Streptococcus pneumoniae B1599

ncbi_submitter: Carnegie Mellon University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Ureaplasma intestinipullorum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Elusimicrobiales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Washington

ncbi_organism_name: Vibrio antiquarius

ncbi_submitter: NOAA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio antiquarius


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: SponGES


ncbi_country: Italy: Cesano Maderno; Monza e Brianza

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 101

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_strain_identifiers: SNUC 128

ncbi_submitter: University of Calgary


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Harvard Medical School


ncbi_country: USA: OH

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo030

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: USA

ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: Germany: Merzen

ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Mesorhizobium ciceri ca181

ncbi_submitter: Application of Microorganisms in Agriculture and Allied Sectors


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola coprophilus;x__Phocaeicola coprophilus DSM 18228 = JCM 13818


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter felis

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Zhejiang provincial center for disease control and prevention


ncbi_organism_name: Cellulosilyticaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Tanzania

ncbi_isolation_source: blood

ncbi_submitter: Muhimbili University of Health and Allied Sciences


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-116

ncbi_submitter: Broad Institute


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Oklahoma


ncbi_country: Taiwan

ncbi_submitter: national health research institutes


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: WAGENINGEN UR


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: wound swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Kitasatospora sp. MAP12-15

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Zwartia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Vaginella massiliensis

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Pseudomonas sp. 22373

ncbi_submitter: Yantai University


ncbi_organism_name: Flexivirga sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Conexibacteraceae bacterium


ncbi_organism_name: Scandinavium sp.

ncbi_submitter: Sichuan University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Schaedlerella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Nagpur

ncbi_isolation_source: sludge from phenol fed wastewater aerobic bioreactor

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: CSIR-National Environmental Engineering Research Institute


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: DC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Raoultella planticola

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: sediment

ncbi_organism_name: Aminipila terrae

ncbi_submitter: World Institute of Kimchi


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Lebanon

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Lebanese American University


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: McGill University


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: monkey placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus schleiferi

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: wastewater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: marine

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Nitrospira sp.


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: bacterium

ncbi_submitter: Northwestern University


ncbi_country: Pakistan

ncbi_isolation_source: urine

ncbi_submitter: FDA


ncbi_assembly_name: freshwater MAG --- LJ-13-9m_bin-554

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus OCMM6046

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Burkholderia pseudomultivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: China: Shenzhen

ncbi_isolation_source: Patient2 sputum

ncbi_submitter: Shenzhen People Hospital


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Indiana; Lilly Dickey Woods IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: intermedium LD_52

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Taurinivorans muris

ncbi_submitter: Division of Microbial Ecology


ncbi_country: Brazil: Carolina; Maranhao

ncbi_isolation_source: non-axenic (unialgal) sample in BG-11 medium

ncbi_organism_name: Nostoc sp. GBBB01

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: India: the Little Rann of Kutch; Gujarat

ncbi_isolation_source: salt crystallizer

ncbi_organism_name: Bacillus sp. SB49

ncbi_submitter: Directorate of Groundnut Research (Indian Council of Agricultural Research)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SB49


ncbi_organism_name: Ferrithrix thermotolerans DSM 19514


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Faecisoma merdavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Mycoplasmatota;c__;o__;f__;g__Candidatus Faecisoma;s__Candidatus Faecisoma merdavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__Mycoplasmatota incertae sedis;g__Candidatus Faecisoma;s__Candidatus Faecisoma merdavium


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Citrobacter sp. S-77

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Spain: Madrid

ncbi_isolation_source: trachea of healthy wild nestling black storks

ncbi_organism_name: Corynebacterium ciconiae DSM 44920

ncbi_submitter: Bielefeld University


ncbi_country: USA: WA; Seattle

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI


ncbi_country: Australia: Brisbane

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0071


ncbi_country: China: Guangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangzhou center for disease control and prevention


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Henan Province

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural Unversity


ncbi_genome_category: derived from single cell

ncbi_strain_identifiers: SCGC AAA160-C11

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium SCGC AAA160-C11


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital of Nanchang University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium CG_4_10_14_0_8_um_filter_37_14


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: lake water

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonella sp.


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Blastocatellales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Dorea amylophila

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: skin swab1645 from squamous cell carcinomas patient MST030

ncbi_organism_name: Staphylococcus schleiferi


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: France: Brest

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Bejing

ncbi_isolation_source: Nose

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: China Agricultural University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Desulfomonilia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: McGill University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_submitter: Broad Institute


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Flavobacteriales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Salmonella sp. M275

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolate: W

ncbi_isolation_source: enrichment culture inoculated from estuarine sediment

ncbi_organism_name: Candidatus Dehalogenimonas loeffleri

ncbi_strain_identifiers: W

ncbi_submitter: Shenyang Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_organism_name: Bacillus safensis

ncbi_submitter: North-west University


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IIT Roorkee


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Chloracidobacterium sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_submitter: The University of Hong Kong


ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Butyrivibrio sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG444

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: California; Cedars Spring

ncbi_isolation_source: spring water

ncbi_submitter: National Institute of Advanced Industrial Science and Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Lithacetigenota;c__;o__;f__;g__Candidatus Psychracetigena;s__Candidatus Psychracetigena formicireducens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Lithacetigenota;g__Candidatus Psychracetigena;s__Candidatus Psychracetigena formicireducens


ncbi_country: Korea: Gwangju

ncbi_isolation_source: Acute pulpitis

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Chosun University


ncbi_country: China: Jiangsu; Nanjing

ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Indian Ocean

ncbi_isolation_source: Sulfide

ncbi_organism_name: Martelella mediterranea

ncbi_submitter: Third Institute of Oceanography,National Oceanic Adminisstration


ncbi_country: USA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Germany: Lusatia; lignite mining district

ncbi_isolation_source: water

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Czech Republic: Jachymov (Joachimstahl)

ncbi_isolation_source: mineral water

ncbi_organism_name: Pseudomonas sp. J452

ncbi_submitter: University of Chemistry and Technology


ncbi_country: Belgium

ncbi_organism_name: Arthrobacter luteolus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Taiwan: Waipu District; Taichung City

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: Academia Sinica


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9592

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_isolation_source: surface water

ncbi_organism_name: Paracoccus beibuensis

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: Rumen uncultured genome RUG11952

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Haloplasmataceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: caecum

ncbi_organism_name: Drancourtella sp. An12

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Marinomonas aquiplantarum

ncbi_strain_identifiers: CECT 7732

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 6496

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Incepta Pharmaceuticals Ltd.


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-315

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Flavobacteriales bacterium

ncbi_strain_identifiers: new MAG-315

ncbi_submitter: Micoorganism


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: surface sea water

ncbi_organism_name: Gilvimarinus agarilyticus

ncbi_submitter: Korea Institute of Ocean Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Achromobacter insolitus

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: Japan

ncbi_strain_identifiers: BGSC 4V1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar tohokuensis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Staphylococcus nepalensis


ncbi_country: Singapore

ncbi_isolation_source: air

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Micromonospora sp. NPDC023966

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Peking University School of Stomatology


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Daviesbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;x__unclassified Candidatus Daviesbacteria;s__Candidatus Daviesbacteria bacterium


ncbi_country: China: Shandong

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Canada: Faculty of Dentistry; University of Toronto; Toronto

ncbi_isolation_source: Oral cavity

ncbi_submitter: University of Toronto


ncbi_country: Canada: Alberta

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Taiwan

ncbi_isolation_source: marine water


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cochin hospital


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Segatella copri

ncbi_submitter: EMG


ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Jiangxi Agricultural University


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Canada: Manitoba

ncbi_organism_name: Actinobacillus suis

ncbi_submitter: Western College of veterinary Medicine, University of Saskatchewan


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Oligella urethralis


ncbi_organism_name: Dialister invisus


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Czech Republic: Tabor

ncbi_organism_name: Acinetobacter baumannii NIPH 335

ncbi_strain_identifiers: NIPH 335

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 335


ncbi_country: China: Jinhua

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Clinical; non-cystic fibrosis patient

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Streptomyces populi

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacterium sp. TMP13

ncbi_submitter: Institute of Microbiology, National Academy of Sciences of Belarus


ncbi_organism_name: Mycobacterium sp. NPDC006124


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Streptomyces sp. SolWspMP-sol2th

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_country: Chile

ncbi_isolation_source: Salmon salar

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Methylotenera sp. 24-45-7


ncbi_country: Pakistan

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Planococcus donghaensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1043794

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Japan: Takaike Kozagawacho Higashimurogun; Wakayama prefecture

ncbi_isolation_source: Plant

ncbi_organism_name: Rosenbergiella epipactidis subsp. japonicus

ncbi_submitter: Complutense University of Madrid


ncbi_organism_name: Sulfurospirillum arsenophilum NBRC 109478

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Nostoc sp. FACHB-145

ncbi_submitter: South China Normal University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Azonexus sp.


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Actinomadura harenae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Fibrobacterota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;x__environmental samples;s__uncultured Fibrobacterota bacterium


ncbi_isolate: AOP18_D1_surf _bin _13

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP18_D1_surf _bin _13

ncbi_submitter: Genoscope


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_submitter: China Jiliang University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Universite Laval


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Alphaproteobacteria bacterium UBA2784

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG13690

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium GW2011_GWB1_36_6


ncbi_organism_name: Haemophilus sputorum

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_isolation_source: biofilm reactor

ncbi_organism_name: Pseudomonas migulae

ncbi_submitter: Research Center for Eco-Environmental Sciences


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enorma massiliensis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Brachybacterium sp. AOP24-D1-21

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: USA:Nine Springs Wastewater Treatment Plant; Madison Metropolitan Sewerage District; Dane County; Madison; WI

ncbi_isolation_source: laboratory-scale deammonification bioreactor inoculated with effluent from wastewater treatment plant

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Streptomyces sp. NBC_00280

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Washington; Bellingham

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_strain_identifiers: Bellingham 1 (D-7473)

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand

ncbi_isolation_source: not known


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: UT

ncbi_isolation_source: soil

ncbi_organism_name: Listeria aquatica

ncbi_submitter: Cornell University


ncbi_country: USA

ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_country: USA: New York

ncbi_isolation_source: stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_organism_name: Dongia sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Wenzhou

ncbi_isolation_source: stool from adult

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: Endobronchial tube

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Shimia thalassica

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterocloster clostridioformis


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: University College Cork


ncbi_isolation_source: ankle tissue

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: The University of Tennessee


ncbi_country: China: Jilin

ncbi_organism_name: Bifidobacterium choladohabitans

ncbi_submitter: China Agricultural University


ncbi_submitter: CDC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Goldiibacteriota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Goldiibacteriota;x__unclassified Candidatus Goldiibacteriota;s__Candidatus Goldiibacteriota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium sp. H4Y

ncbi_submitter: Seoul National University College of Medicine


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: Pediatrics Bacteriology, Kyushu univercity


ncbi_country: India

ncbi_isolation_source: Drug

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Christian Medical College


ncbi_organism_name: Candidatus Trichorickettsia mobilis

ncbi_submitter: University of Pavia


ncbi_country: France: Valenciennes

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_country: Italy

ncbi_isolation_source: salami paste production

ncbi_submitter: FDA


ncbi_country: India: Tripura

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Madhyam S7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China

ncbi_isolation_source: feces


ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces cellulosae

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Kenya

ncbi_organism_name: Lachnoclostridium sp. UBA5890

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinoplanes sp.

ncbi_submitter: Zhejiang University


ncbi_country: Ireland

ncbi_isolation_source: Environment (waste water)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 50.E.08


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Yersinia pestis PY-11

ncbi_submitter: Institute for Genome Sciences


ncbi_assembly_name: freshwater MAG --- D14_bin-0344

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_country: Antarctica: King George Island; Admiralty Bay

ncbi_isolation_source: petroleum-contaminated soil collected near the petroleum pumping and storage warehouse at the Henryk Arctowski Polish Antarctic Station

ncbi_organism_name: Microbacterium sp. ANT_H45B

ncbi_submitter: University of Warsaw, Faculty of Biology, Institute of Microbiology


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Copenhagen


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Aberdeen


ncbi_country: USA: Massachusetts

ncbi_organism_name: Vibrio sp. 14N.309.X.WAT.E.F5

ncbi_submitter: MIT


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_country: Panama: Boquisco

ncbi_isolation_source: termite gut

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Spain: Leon

ncbi_isolation_source: culture maintained in Leon; missing plasmid pSCL3

ncbi_organism_name: Streptomyces clavuligerus

ncbi_submitter: John Innes Centre


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China:Hubei; Xianning

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Finland

ncbi_submitter: University of Helsinki


ncbi_country: Denmark: Hoersholm; Bench next to a building in Hoersholm

ncbi_organism_name: Streptomyces atratus

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-0309

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseibium aggregatum

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Polymorphospora sp. A560

ncbi_submitter: Hebei university


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute for Clinical Pathology and Medical Research


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: DS-I Africa


ncbi_organism_name: uncultured Deinococcus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Methylobacterium sp. NPDC097174

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Cocleimonas sp.


ncbi_country: Pacific Ocean: Manus Basin

ncbi_isolation_source: ctenidium tissue of snail from surface of black chimney in hydrothermal vent field

ncbi_organism_name: Campylobacterota bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Chloroflexi bacterium RBG_16_48_8

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__unclassified Chloroflexota;s__Chloroflexi bacterium RBG_16_48_8


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Liaocheng University


ncbi_organism_name: uncultured Desulfobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. NW196

ncbi_submitter: Sichuan University


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculum intestinale


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces


ncbi_isolation_source: not known

ncbi_organism_name: Nocardia farcinica


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG