ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Linnaeus University


ncbi_assembly_level: Scaffold

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_country: Italy: Rome

ncbi_isolation_source: anaerobic reactor producing medium/long chain fatty acids through the fermentation of food waste

ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: Italian National Research Council (CNR)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


gtdb_representative: t

ncbi_country: USA: New Hampshire; Town of Hanover; park adjacent to Geisel Medical School

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. RC

ncbi_strain_identifiers: RC

ncbi_submitter: Colby Sawyer College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. RC


ncbi_country: Serbia

ncbi_organism_name: Xenorhabdus budapestensis

ncbi_submitter: Goethe University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Slovenia

ncbi_isolation_source: Stew with sauerkraut

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 206

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1897

ncbi_submitter: University of Calgary


ncbi_country: Sweden

ncbi_isolation_source: secrete

ncbi_organism_name: Mycobacterium tuberculosis BTB09-565

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: China: Zhejiang

ncbi_isolation_source: rice paddy field

ncbi_organism_name: Burkholderia plantarii

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: vacuum-packaged beef

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Latilactobacillus;s__Latilactobacillus fuchuensis;x__Latilactobacillus fuchuensis DSM 14340 = JCM 11249


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Canada: Frobisher Bay; Nunavut

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. RKAG290

ncbi_submitter: University of Prince Edward Island


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R949;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: USA: Massachusetts

ncbi_isolation_source: tongue scraping

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: France

ncbi_isolation_source: organ from animal collected from slaughterhouse

ncbi_submitter: PLOsOne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zurita & Zurita Laboratorios


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 115

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 741

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University Graduate School of Medicine


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactobacillus sp. HBUAS51387

ncbi_submitter: Hubei University of Arts and Science


ncbi_country: Ireland

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus allomucosae

ncbi_strain_identifiers: WILCCON 0050

ncbi_submitter: Wilmar International Limited


ncbi_assembly_level: Complete Genome

ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_country: USA: WA

ncbi_isolation_source: glenoid explant from a patient with failed shoulder athroplasty

ncbi_organism_name: Cutibacterium acnes P05

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Jannaschia seohaensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_assembly_name: Salmonella enterica CVM N51279 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: Brazil

ncbi_isolation_source: Buffalo milk

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal


ncbi_organism_name: Acinetobacter faecalis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences


ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: B Kr

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_country: Canada

ncbi_isolation_source: dairy animals with Johne s disease

ncbi_strain_identifiers: NL 96E

ncbi_submitter: Memorial University of Newfoundland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Sungkyunkwan University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Cronobacter sakazakii 701

ncbi_submitter: LifeTech


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Blautia sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Bartonella sp. PS7NMGDW

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering (Inner Mongolia Agricultural University)


ncbi_country: China: Yunfeng mountain

ncbi_isolation_source: soil

ncbi_organism_name: Hyphomicrobium album

ncbi_refseq_category: reference genome

ncbi_submitter: Huazhong Agriculture university


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University


ncbi_organism_name: Streptomyces sp. NPDC015130

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: North Carolina State University


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_assembly_name: Salmonella enterica CVM N51264 v1.0

ncbi_country: USA: GA

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Hadar

ncbi_submitter: FDA


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Providencia stuartii

ncbi_submitter: NanKai universit


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Cuba: mineral spring in Santa Fe

ncbi_isolation_source: mineral spring

ncbi_organism_name: Chroococcidiopsis cubana CCALA 043

ncbi_strain_identifiers: CCALA 043

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae serogroup III

ncbi_submitter: GSK Vaccines


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wildermuthiibacteriota;s__Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_48_25


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus pneumoniae PCS81218

ncbi_submitter: Washington University


ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01449

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01449


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Candidatus Brocadiia bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;x__unclassified Candidatus Brocadiia;s__Candidatus Brocadiia bacterium


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Microcoleaceae cyanobacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Mitsuokella sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Lunds Universitet


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Halobacteriovorax sp. YZS-2-1

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Escherichia coli

ncbi_submitter: UIUC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Rhodohalobacter sp.


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Tengchong; QiaoQuan hot spring

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Candidatus Thermoflexus sinensis

ncbi_submitter: Sun Yat-Sen University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: water

ncbi_organism_name: Devosia ureilytica

ncbi_submitter: institute of microbiology, chinese academy of sciences


ncbi_country: Norway

ncbi_isolation_source: Poultry processing equipment

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: Nofima


ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans X02736

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: PA

ncbi_isolation_source: rectum african green monkey (Chlorocebus sabaeus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Hafnia alvei

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Rhodococcus sp. SMB37

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. SMB37


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: India: Thanjavur

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UTI89

ncbi_submitter: SASTRA University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Bangladesh

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: China: Sichuang

ncbi_isolation_source: cooked food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Desulfobacterales bacterium


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: New Zealand

ncbi_organism_name: Franconibacter helveticus

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_organism_name: Rahnella inusitata


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Allen Lab


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: University of Calgary


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Thalassolituus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Zeimonas sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: milk

ncbi_organism_name: Paenibacillus odorifer

ncbi_submitter: Cornell University


ncbi_country: USA: Loma Ridge

ncbi_isolation_source: Leaf Litter

ncbi_organism_name: Curtobacterium sp. MMLR14_014

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_submitter: China Agricultural University


ncbi_country: USA: Delaware

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_country: Italy: Sicily

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: contaminated soil from pesticide factory

ncbi_organism_name: Achromobacter pulmonis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_assembly_level: Chromosome

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. Y5-11

ncbi_submitter: heilongjiang university


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: University of Texas at Austin


ncbi_country: Belgium

ncbi_submitter: Sciensano


ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Selenomonas sputigena

ncbi_submitter: Delaware Technical Community College


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes dispar

ncbi_submitter: IHU


ncbi_country: Canada: Lacombe

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Mycobacterium tuberculosis T46

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_organism_name: Alkalihalobacterium sp. APHAB7

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Ralstonia sp. PBBBR1

ncbi_submitter: CNRS-AMU


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Cohaesibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Treponema denticola

ncbi_submitter: University Duisburg-Essen


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: New Zealand

ncbi_isolation_source: blood

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-P16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China

ncbi_isolation_source: duck organ

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Paratractidigestivibacter sp.


ncbi_organism_name: Soonwooa sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: EMG


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Phycisphaerales bacterium ac7

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_submitter: University of Dhaka

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Granulicella sp.


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptococcus pluranimalium

ncbi_submitter: JiLin Agricultural Scuence and Technolog


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: McMaster University


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Actinomycetota bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidobacteriota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: South Korea: Bundang

ncbi_isolation_source: adult feces

ncbi_organism_name: Hafnia alvei

ncbi_submitter: Korea Food Research Institute


ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Brachyspira hyodysenteriae ATCC 27164

ncbi_submitter: University of Minnesota


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: Abattoir

ncbi_submitter: International Livestock Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Wilhelmsburg


ncbi_country: South Korea: Saemankum

ncbi_isolation_source: Tidal flat sediments

ncbi_organism_name: Shewanella seohaensis

ncbi_submitter: Karolinska Institutet


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: bacterium

ncbi_submitter: University of Tehran


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Seattle

ncbi_isolation_source: Shoulder wound

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: China: Jiangsu

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Zhejiang University


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_organism_name: Nostoc sp. DedVER01b

ncbi_submitter: LANGEBIO


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Ventrenecus avicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Ventrenecus;s__Candidatus Ventrenecus avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Ventrenecus;s__Candidatus Ventrenecus avicola


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Olsenella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Holdemanella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Strip loin

ncbi_submitter: US Meat Animal Research Center-ARS


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_country: Brazil: Rio Grande do Sul;Porto Alegre

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: MD

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Stenotrophomonas sp.


ncbi_assembly_name: freshwater MAG --- VK_bin-2652

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Riemerella anatipestifer CH3

ncbi_submitter: Shanghai Veterinary Research Institute, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pecs Medical School


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea_bin-02604

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P1B

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P1B


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: KYUNG HEE UNIVERSITY


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces sp. Root1310

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Streptococcus oralis

ncbi_strain_identifiers: MER TA 112

ncbi_submitter: Jet Propulsion Laboratory


ncbi_submitter: Hatay Mustafa Kemal University Faculty of Veterinary Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Minnesota

ncbi_isolation_source: Freshwater Pond

ncbi_organism_name: Cellvibrio sp. PSBB023

ncbi_submitter: University of Minnesota


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Ethiopia: Amhara; East Gojjam

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: BGI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Anaerotruncus sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonas baltica

ncbi_submitter: University of Neuchatel


ncbi_organism_name: uncultured Romboutsia sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: Kingella potus

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Streptococcus sp. UBA632

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: CAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Russia: Tomsk

ncbi_isolation_source: urethral smear

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenereology and Cosmetology (CNIKVI)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University


ncbi_country: Germany: Freising

ncbi_isolation_source: sourdough

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Norway: Bergen

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_organism_name: Halopseudomonas aestusnigri

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Novosphingobium olei

ncbi_submitter: Kyonggi University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Human

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Japanese horse mackerel (Trachurus japonicus)

ncbi_organism_name: Shewanella sp. NFH-SH190041

ncbi_submitter: Laboratory of food hygiene, Department of Food Bioscience and Biotechnology, Nihon University, College of Bioresouce Sciences


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: BGI


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Cutibacterium avidum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Korea

ncbi_organism_name: Puniceibacterium confluentis

ncbi_submitter: Shandong University


gtdb_type_species_of_genus: t

ncbi_country: Peru

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Thermosediminibacter oceani DSM 16646

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: USA: Texas;Houston

ncbi_isolation_source: blood

ncbi_submitter: The UT MD Anderson Cancer Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_organism_name: Helicobacter pylori Gambia94/24

ncbi_submitter: Berg lab, Washington University Medical Shool


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Paratractidigestivibacter faecalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: uncultured Lichenihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Spirosoma sp.

ncbi_submitter: The John Innes Centre


ncbi_organism_name: Corynebacterium kefirresidentii

ncbi_submitter: University of York


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Schaalia turicensis


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_country: Italy

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas graminis

ncbi_submitter: Lithuanian Research Centre for Agriculture and Forestry


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Brevundimonas lenta

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: France: Bordeaux

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_submitter: University of Wyoming


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: pus

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Xi an

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Xi'an Jiaotong University


ncbi_isolation_source: Carp intestinal

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Henan Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Prevotella melaninogenica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium KLE1615

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Bacteriovorax sp.

ncbi_submitter: Stockholm University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Pseudorhodobacter sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Pakistan

ncbi_isolation_source: throat

ncbi_submitter: FDA


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_submitter: Zhejiang Agriculture and Forestry University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: Baylor College of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium oral taxon 272;x__Bacteroidetes bacterium oral taxon 272 str. F0290


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_country: Germany: North Sea

ncbi_isolation_source: marine surface water

ncbi_organism_name: Lentibacter algarum

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Baileyella intestinalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Comamonas sp.

ncbi_submitter: China Agricultural University


ncbi_country: Comoros

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bath


ncbi_country: China

ncbi_isolation_source: swab of staff s sole

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Enterococcus sp. HMSC072F07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: oral

ncbi_organism_name: Staphylococcus aureus M0620

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Malaysia

ncbi_isolation_source: endotracheal tube swab

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Aggregatibacter kilianii

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Streptomyces sp. NPDC021100

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland

ncbi_isolation_source: milk product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SEMIA 498

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NRRL WC-3549

ncbi_strain_identifiers: NRRL WC-3549

ncbi_submitter: University of Illinois


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Germany

ncbi_isolation_source: Edible insect Zophobas atratus (Pet Feed Store)

ncbi_submitter: Justus Liebig University Giessen


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: EMG


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Germany: Hohenlockstedt

ncbi_isolation_source: rhizosphere of Abies nordmanniana

ncbi_organism_name: Paenibacillus sp. 37

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Gatineau; Quebec

ncbi_isolation_source: Root nodule from soybean plant inoculated with root zone soil from Amphicarpaea bracteata

ncbi_organism_name: Bradyrhizobium symbiodeficiens


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Huizhou

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudescherichia sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Faecalibacillus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__environmental samples;s__uncultured Candidatus Rokubacteria bacterium


ncbi_submitter: Faculty of sciences and technology of Mohammedia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG


ncbi_organism_name: Adlercreutzia sp.


ncbi_organism_name: Candidatus Egerieousia sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Egerieousia;x__unclassified Candidatus Egerieousia;s__Candidatus Egerieousia sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Pelagibacteraceae bacterium TMED146

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_country: USA: Florida

ncbi_isolation_source: black band-diseased coral

ncbi_organism_name: Pseudovibrio sp. FO-BEG1

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Goat Meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Micromonospora echinofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Malaysia: Perak

ncbi_isolation_source: post larvae whole body

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: GeneSEQ Sdn Bhd


ncbi_country: USA: St. Joseph; Minnesota

ncbi_isolation_source: soil

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_country: USA: Kansas

ncbi_isolation_source: brown patch in grass

ncbi_organism_name: Enterobacter sp. Crenshaw

ncbi_strain_identifiers: Crenshaw

ncbi_submitter: University of Florida


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Estonia: Tartumaa; Rannu vald

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Niallia taxi

ncbi_submitter: AHMED BEN BELLA UNIVERSITY OF ORAN


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolation_source: lungs from a calf with respiratory disease

ncbi_submitter: University of Idaho

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Pasteurella;s__Pasteurella multocida;sb__Pasteurella multocida subsp. multocida;x__Pasteurella multocida subsp. multocida P1062


ncbi_country: Algeria

ncbi_organism_name: Saccharothrix algeriensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: cecal contents

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG14248

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wuhan CDC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence hot water heater drain valve

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: sediment

ncbi_organism_name: Guptibacillus hwajinpoensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: plant

ncbi_organism_name: Plantibacter sp. VKM Ac-2876

ncbi_strain_identifiers: VKM Ac-2876

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Seonamhaeicola sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: 1st version of the MRSA CUHK_HK188

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Chinese University of Hong Kong


ncbi_assembly_name: freshwater MAG --- MJ111018B_bin-0537

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Tecnologico de Monterrey


ncbi_country: USA: PA

ncbi_isolation_source: ovine spleen

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Haixi City; Qinghai Province

ncbi_isolation_source: feces

ncbi_organism_name: Nocardioides pantholopis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Sphingomonas sp. NCPPB 2930

ncbi_strain_identifiers: NCPPB 2984

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG769

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Russia: North Caucasus region

ncbi_organism_name: Neorhizobium galegae

ncbi_submitter: ARRIAM


ncbi_country: Kenya

ncbi_organism_name: Prevotellaceae bacterium UBA766

ncbi_submitter: University of Queensland


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Maribacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean: Gulf of Guinea

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas phenolica

ncbi_submitter: Technical University of Denmark


ncbi_country: Tanzania

ncbi_isolation_source: vagina

ncbi_organism_name: Sphingobacterium sp. UDSM-2020

ncbi_submitter: University of Dar es Salaam


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Paenibacillus sp. FSL M7-0134

ncbi_submitter: Penn State


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: Allen Lab


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Parabacteroides sp. CH2-D42-20

ncbi_submitter: Chinese Academy of Science


ncbi_country: Poland: Poznan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample from feedlot cattle

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_country: Brazil: Rio Grande do Sul State.

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria brasiliensis

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Acholeplasma brassicae

ncbi_submitter: MPIMG


ncbi_country: USA: WI

ncbi_isolation_source: dairy Cows

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60490F

ncbi_submitter: FDA


ncbi_country: USA: Philadelphia

ncbi_isolation_source: retail chicken

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United States Department of Agriculture


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus pasteurianus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_strain_identifiers: Sil NS 34

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Sphingobium olei

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Chloroflexia bacterium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_isolate: AOP36_E1_surf _bin _15

ncbi_strain_identifiers: AOP36_E1_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Calditrichaceae bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. 315G5

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 315G5


ncbi_organism_name: Boseaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_country: Greenland: Kangerlussuaq

ncbi_isolation_source: soil sample line 2 60 ft from anomalous acidified pond located near a glacio-fluvial outwash plain

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Indiana University Bloomington


ncbi_country: USA: Seattle

ncbi_isolation_source: tissue right Shoulder glenoid membrane

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: South Korea: Jeju

ncbi_isolation_source: insect larvea

ncbi_organism_name: Acinetobacter sp. CWB-G5

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: peritoneal dialysis fluid

ncbi_organism_name: Blastococcus sp. CCUG 61487

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhuhai People's Hospital


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: freshwater lake Microcystis colony

ncbi_organism_name: Cutibacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: human gut

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Phaeobacter inhibens

ncbi_submitter: University of New South Wales


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Kiloniellaceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Taiwan: Zhaori spring; Green island

ncbi_isolation_source: salt water hot spring

ncbi_organism_name: Microbulbifer pacificus

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: Veterinary Research Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pyogenic fluids of percutaneous drainage

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: zhejiang University


ncbi_country: USA: Kaiparowits Plateau; Grand Staircase Escalante National Monument; UT

ncbi_isolation_source: wet soil under the overhang with pH 7.7 - 8.1

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Western Australia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Canada: Ontario

ncbi_isolation_source: intake water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: SC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella seminalis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_assembly_name: Vibrio harveyi strain VIB391

ncbi_country: Thailand

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Copenhagen


ncbi_country: China: Beihai

ncbi_isolation_source: marine sediment ENVO_03000033

ncbi_organism_name: Photobacterium sp. DA100

ncbi_submitter: Fourth Institute of Oceanography, Ministry of natural resources


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_organism_name: Pusillimonas sp. T7-7

ncbi_submitter: TEDA School of Biological Sciences and Biotechnology, Nankai University


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 1; 40cm depth; 6 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__unclassified Gemmatimonadota;s__Gemmatimonadetes bacterium 13_1_40CM_3_70_6


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tardiphaga sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangzhou University of Chinese Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptomyces sp. McG8

ncbi_submitter: Ruder Boskovic Institute


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Denmark

ncbi_isolation_source: human

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Gilliamella sp.

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Yersinia pestis 30017

ncbi_submitter: Beijing Genomics Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Mount Olive; NC

ncbi_isolation_source: cucumber fermentation brine

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_strain_identifiers: Saari 6

ncbi_submitter: University of Helsinki


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Norway

ncbi_isolation_source: Head ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Christensenella sp. UBA1259

ncbi_submitter: University of Queensland


ncbi_organism_name: Paracoccus hibiscisoli

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_country: Sweden

ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: China: Liaoning; Shenyang

ncbi_isolation_source: animal waste

ncbi_organism_name: Comamonas testosteroni

ncbi_submitter: Jilin University


ncbi_organism_name: Ascidiaceihabitans sp.

ncbi_submitter: University of Southern California


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Enterococcus avium

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Micromonospora sp. NPDC005237

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: Phormidium lacuna

ncbi_organism_name: Phormidium lacuna HE10JO

ncbi_submitter: KIT


ncbi_country: Sweden: Goteborg

ncbi_isolation_source: blood of a 28-year-old man

ncbi_organism_name: Brucella pseudogrignonensis

ncbi_submitter: Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_organism_name: Filifactoraceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H84492

ncbi_submitter: Broad Institute


ncbi_country: Spain

ncbi_isolation_source: Laying hens

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: China: Guangdong; Guangzhou

ncbi_isolation_source: Air conditioning system

ncbi_organism_name: Allofrancisella guangzhouensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-0272

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chouaib Doukkali University


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Neolewinella sp.


ncbi_submitter: EPFL


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Dourados

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sun Yat sen University


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: Prochlorococcus sp. AG-321-E21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Telluria sp.


ncbi_country: China: Chengdu

ncbi_isolation_source: skin sample from patient

ncbi_organism_name: Nocardia huaxiensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Staphylococcus sp. HMSC13A10

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Burkholderiaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC062A05


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Russia: Kazan

ncbi_isolation_source: feces from HP_010

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC050617

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Ohio

ncbi_isolation_source: Cecal

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: FDA


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: USA: MI; Macomb

ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Ohio State University


ncbi_organism_name: Roseovarius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China

ncbi_isolation_source: Tissue sample

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Huazhong Agricultural University


ncbi_country: South Korea: Daegu

ncbi_organism_name: Parabacteroides caeci

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bologna


ncbi_organism_name: Salmonella sp. NW989

ncbi_submitter: Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belarus: Minsk

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Institute of Microbiology, Belarus National Academy of Sciences


ncbi_country: Slovenia: Domzale

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Biotechnical faculty, University of Ljubljana


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_organism_name: uncultured Hirschia sp.


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Lactobacillus johnsonii