ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Sudan

ncbi_genome_representation: full

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: King Abdulaziz University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: human stool

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: DOE JGI


ncbi_assembly_level: Scaffold

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: WASHINGTON UNIVERSITY CENTER FOR GENOME SCIENCES


gtdb_representative: t

ncbi_organism_name: Sporolactobacillus spathodeae

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Melbourne

ncbi_submitter: Monash University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Prevotella veroralis


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Peptoniphilus harei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: burned soil

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Colorado State University


ncbi_isolation_source: marine

ncbi_organism_name: Alteromonas australica

ncbi_submitter: University of Queensland


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Anaerovibrio sp.


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: Rhizosphere of onions irrigated with triclosan in potting soil

ncbi_organism_name: Paenibacillus sp. OT2-17

ncbi_submitter: Texas A&M International University


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Spain: Castile and Leon; Matanza

ncbi_organism_name: Phyllobacterium sp. 0TCS1.6C

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: South Korea: Seoul

ncbi_isolation_source: nasophraynx

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chungbuk National University Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: China: Xinjiang

ncbi_isolation_source: abortions

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Chinese Animal Health and Epidemiology Center


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: New York City

ncbi_isolation_source: sputum unspecified

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Zhangshu City; Jiangxi Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: South Africa

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: The University of Arizona


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_organism_name: Candidatus Thiodiazotropha sp. LLP2

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;x__unclassified Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. LLP2


ncbi_country: Greece

ncbi_isolation_source: Not known


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Luteimonas sp. MC1825

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_assembly_level: Chromosome

ncbi_country: Canada: Alberta

ncbi_isolation_source: Animal - Rodent

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20123395


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Minnesota


ncbi_submitter: University of Galway


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_submitter: Toho university


ncbi_organism_name: Roseateles puraquae

ncbi_submitter: Tsinghua University


ncbi_organism_name: Alistipes dispar


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. NW335

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Fimbriimonadales bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: USA: Georgia

ncbi_isolation_source: surface water

ncbi_organism_name: Enterococcus faecalis GAN13

ncbi_submitter: Georgia Institute of Technology


ncbi_country: South Korea

ncbi_isolation_source: rhizosphere of field-grown sugar cane

ncbi_organism_name: Duganella radicis

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Oita University


ncbi_country: South Korea: Jebu island

ncbi_isolation_source: tidal flat

ncbi_organism_name: Pseudoalteromonas caenipelagi

ncbi_submitter: Sungkyunkwan University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: France: Besancon

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: Faeces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Heihe; Heilongjiang

ncbi_organism_name: Bradyrhizobium sp. AUGA SZCCT0051

ncbi_strain_identifiers: AUGA SZCCT0051

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Oman

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Flavobacterium alvei

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus sp. DIV0970a

ncbi_submitter: Broad Institute


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Antioquia


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4298

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4298


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Switzerland: Bern

ncbi_isolation_source: Driveline

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Inselspital, Bern University Hospital


ncbi_country: Indian Ocean: Arabian Sea

ncbi_isolation_source: sea water

ncbi_organism_name: Alteromonas lipolytica

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Staphylococcus sp.


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Dubosiella newyorkensis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter felis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Cohnella sp. SGD-V74

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Texas

ncbi_isolation_source: Subiliac Lymph Node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 475

ncbi_submitter: SC


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Durham; NH; Adams Point

ncbi_isolation_source: root nodule

ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: University of New Hampshire


ncbi_country: Poland: Warszawa

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus sp. 3851

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: N


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_country: Madagascar

ncbi_isolation_source: Chamaeleonidae

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. salamae;x__Salmonella enterica subsp. salamae serovar 55:k:z39;x__Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_assembly_name: Rumen uncultured genome RUG13734

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Ecuador: Quito

ncbi_isolation_source: human stool

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Beijing

ncbi_organism_name: Coxiella burnetii

ncbi_strain_identifiers: nine mile phase II

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Australia

ncbi_isolation_source: abscess

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Calgary


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Anaerococcus porci

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Guangdong

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Amedibacillus dolichus CAG:375

ncbi_submitter: DTU


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Surveillance swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Tianjin

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; wall diverticulum

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptomyces sp. NPDC002917

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Salmonella sp. NW918

ncbi_submitter: Sichuan University


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 136

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolate: AOP18_B2_surf _bin _9

ncbi_organism_name: Latilactobacillus curvatus

ncbi_strain_identifiers: AOP18_B2_surf _bin _9

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Greece

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: bioMerieux


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Rutgers University


gtdb_type_species_of_genus: t

ncbi_country: Switzerland

ncbi_isolation_source: human bronchial secretion

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;g__Empedobacter;s__Empedobacter brevis;x__Empedobacter brevis NBRC 14943 = ATCC 43319


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Photobacterium aquimaris

ncbi_submitter: FDA/CFSAN


ncbi_country: Denmark

ncbi_isolation_source: aborted fetus tissue

ncbi_organism_name: Aliarcobacter thereius

ncbi_submitter: Ghent University


ncbi_organism_name: Clostridiales bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0070R

ncbi_submitter: Broad Institute


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 1

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Glasgow


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: San Francisco; CA

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella quintana JK 56

ncbi_strain_identifiers: JK 56


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond H1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 415

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 983

ncbi_submitter: University of Calgary


ncbi_isolation_source: Colon

ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: INRA


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas reactans

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Yokenella regensburgei

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Kenya: Nairobi

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: USAMRD


ncbi_organism_name: Lachnospiraceae bacterium MD308


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Arcanobacterium sp.


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Salmonella sp. NW666

ncbi_submitter: Sichuan University


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Water column of Lake Zurich; Switzerland

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: feet

ncbi_submitter: The Affiliated Hospital of Chengde Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar London


ncbi_isolation_source: Randers Regnskov

ncbi_organism_name: Testudinibacter aquarius

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: National Jewish Health


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Helicobacter cetorum

ncbi_submitter: University Duisburg-Essen


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15


ncbi_country: France: Paris

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: pupal cells

ncbi_organism_name: Serratia marcescens

ncbi_strain_identifiers: Byron

ncbi_submitter: USDA-ARS


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Canada: Guelph

ncbi_isolation_source: Swine manure pit

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Nanjing City

ncbi_isolation_source: interstitial fluid

ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: Hohai University


ncbi_organism_name: Meiothermus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Actinomycetospora sp. CA-084318

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Providencia sp. VP23HZSY-1

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Russia: Moscow

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K6-243

ncbi_submitter: Institute of Marine research


ncbi_country: USA: Houston

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Houston Methodist Hospital


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 12-15 cm

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Nevskia sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: MSA University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: Rumen uncultured genome RUG12868

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Egypt

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Minas Gerais


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium CG_4_10_14_0_2_um_filter_40_20


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: caecum

ncbi_organism_name: Phocaeicola barnesiae

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Anhui

ncbi_isolation_source: chicken meat products

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: [Clostridium] cf. saccharolyticum K10

ncbi_submitter: metaHIT


ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: Buffalo milk

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: bacterium


ncbi_organism_name: Bdellovibrionota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_submitter: Academy of Military Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Coprococcus eutactus


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: Federico II University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylibium sp.

ncbi_submitter: Monash University


ncbi_organism_name: Clostridium nigeriense

ncbi_submitter: China Conservation and Research Center for the Giant Panda


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Mediterraneibacter faecis


ncbi_organism_name: Faecalibacterium sp.


ncbi_organism_name: uncultured Chitinophaga sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM


ncbi_country: Denmark

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus simplex

ncbi_submitter: University of Copenhagen


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_country: Australia: Coast of Sydney

ncbi_isolation_source: sea water

ncbi_organism_name: Aquimarina sp. AD1

ncbi_submitter: University of New South Wales


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Svalbard: Spitsbergen

ncbi_isolation_source: Arctic soil

ncbi_organism_name: Pedobacter psychroterrae

ncbi_submitter: Kyonggi University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: HI

ncbi_isolation_source: yellowfin tuna anal vent

ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_submitter: EMG


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Oceanobacillus picturae

ncbi_submitter: URMITE


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Anaerotruncus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: bacterium

ncbi_submitter: Northeastern University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium UBA6413

ncbi_submitter: University of Queensland


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Campylobacter coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Metallibacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Pennsylvania; Centralia

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Michigan State University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Oceanospirillaceae bacterium UBA1126


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_submitter: Aarhus University


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: Germany

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Uppsala University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma de Nuevo Leon


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: India

ncbi_isolation_source: Glacier water sample

ncbi_organism_name: Cryobacterium breve

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptomyces rhizosphaericola

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: environment

ncbi_organism_name: Lactobacillus delbrueckii subsp. indicus

ncbi_submitter: Korea University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Nonomuraea recticatena

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: KS

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Italy

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter acinonychis

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_assembly_name: Denovo assembly

ncbi_organism_name: Brucella abortus S99

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium RIFCSPHIGHO2_01_FULL_41_45


ncbi_country: Canada: Vancouver

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Huelva

ncbi_isolation_source: solar saltern

ncbi_organism_name: Spiribacter roseus

ncbi_submitter: University of Seville


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Hellea sp.

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: SAHMRI


ncbi_country: France

ncbi_isolation_source: bile

ncbi_submitter: Universite Paris-Sud


ncbi_country: USA: MD

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Nocardia sp. NPDC005998

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Muenster

ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agricultural Research Service


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: Australia: Brisbane

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Pandemis cinnamomeana


ncbi_organism_name: Brevundimonas diminuta


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Fumia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Stenotrophomonas bentonitica

ncbi_submitter: University of British Columbia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Gordonia sp. DT101

ncbi_submitter: University of Liege

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. DT101


ncbi_organism_name: uncultured bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: ProteonPharmaceuticals


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Bursa Uludag University


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Hongan

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS TMP-1

ncbi_isolation_source: activated sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_strain_identifiers: SZAS TMP-1

ncbi_submitter: The University Hong Kong


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: poultry farm

ncbi_organism_name: Glutamicibacter mishrai

ncbi_submitter: Shandong First Medical University


ncbi_organism_name: Gordonia malaquae

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Tongji University


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3477

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Shanghai

ncbi_isolation_source: Plant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Cytobacillus gottheilii

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: City University of Hong Kong


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 45052_1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: coral

ncbi_organism_name: Sulfitobacter sp. R18_2

ncbi_submitter: University of Konstanz


ncbi_country: Poland: Przemysl

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: CAU


ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Division of Infection Control and Prevention, Medical Mycology Research Center, Chiba University


ncbi_country: Russia: Krasnodar Krai; Kuban

ncbi_isolation_source: honey bee; gastrointestinal tract

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: MO

ncbi_isolation_source: granny smith apple

ncbi_submitter: FDA


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas fulva


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Tilapia

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Mississippi State University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut

ncbi_organism_name: Enterococcus sp. DIV0849a

ncbi_submitter: Broad Institute


ncbi_country: Japan: Miyazaki

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio hyugaensis

ncbi_submitter: Academia Sinica


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0322

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidimicrobium sp.

ncbi_submitter: BILS


ncbi_country: China: Guangdong

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Yunnan

ncbi_isolation_source: feces

ncbi_organism_name: Ruania zhangjianzhongii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Fusobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterobacterales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11772

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium ihumii


ncbi_country: India: Vellore; TN

ncbi_isolation_source: Urine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: KUMC


ncbi_country: Italy: Lazio / Tuscano

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Rothia aeria

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UMCG Groningen


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea

ncbi_organism_name: Crassaminicella profunda

ncbi_submitter: Institute of Deep-Sea Science and Engineering, CAS


ncbi_assembly_name: Sphingopyxis sp. MC1

ncbi_isolation_source: activated sludge from a waste water treatment plant

ncbi_organism_name: Sphingopyxis sp. MC1

ncbi_submitter: Aalborg University


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei ABCPW 107

ncbi_strain_identifiers: ABCPW 107

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Vibrio sp. 1F253

ncbi_submitter: University of Vienna


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: South Korea: Seoul

ncbi_isolation_source: rectal swab

ncbi_submitter: Korea National Insititute of Health


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: USA: Washington state

ncbi_isolation_source: stool/fecal sample

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1391434

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Comenius University Science Park


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Egerieousia sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Egerieousia;x__unclassified Candidatus Egerieousia;s__Candidatus Egerieousia sp.


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Psychrobacter sp. AOP7-A1-18

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Nocardia sp. NPDC006982

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Northwestern University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Mycolicibacterium monacense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Streptomyces sp. NPDC057418


ncbi_country: USA: Western Washington State; Puget Sound

ncbi_isolation_source: plant roots

ncbi_organism_name: Rahnella sp. PD12R

ncbi_submitter: University of Washington


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Edinburgh


ncbi_country: China: Hengyang

ncbi_isolation_source: Liver puncture

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antioquia


ncbi_isolate: Patient #35

ncbi_isolation_source: Skin

ncbi_organism_name: Cutibacterium acnes

ncbi_strain_identifiers: Patient #35

ncbi_submitter: sapienza university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Hawaii

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: MIT


ncbi_country: USA: PA

ncbi_isolation_source: stool

ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_organism_name: Dokdonia sp.

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_organism_name: Weissella confusa

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Embrapa Suinos e Aves

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Choleraesuis


ncbi_country: Algeria: Bejaia

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Sorbonne University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Hoylesella nanceiensis

ncbi_submitter: EMG


ncbi_isolation_source: aerobic granular sludge of a lab scale sequencing batch reactor treating synthetic wastewater

ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Swiss Federal Institute of Technology Lausanne (EPFL)


ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1378 from squamous cell carcinomas patient MST002

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: blood

ncbi_submitter: Seattle Children's Hospital


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Pakistan: Islamabad

ncbi_isolation_source: local cheese

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: PARC-National Agricultural Research Center


ncbi_organism_name: Bacillus mojavensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Planctomycetaceae bacterium


ncbi_organism_name: Salmonella sp. NW565

ncbi_submitter: Sichuan University


ncbi_isolation_source: metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Korea

ncbi_isolation_source: sputa

ncbi_organism_name: Mycobacterium sp. MOTT36Y

ncbi_submitter: Seoul National University College of Medicine


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Kyungpook National University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Alaska; Fairbanks

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. TH15

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: USA:Bakersfield; California

ncbi_organism_name: Xylella fastidiosa subsp. fastidiosa

ncbi_submitter: USDA


ncbi_organism_name: Rhizobium daejeonense


ncbi_country: Spain

ncbi_submitter: University of Leicester


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Alistipes sp.


ncbi_assembly_name: Rumen uncultured genome RUG14335

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Succiniclasticum sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-193

ncbi_submitter: Broad Institute


ncbi_country: Mongolia: Nalaikh coal mining site

ncbi_isolation_source: coal mining site soil

ncbi_organism_name: Amycolatopsis mongoliensis

ncbi_submitter: Chungnam National University


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas sp. O62

ncbi_submitter: Universidade Federal do Rio de Janeiro (UFRJ)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_organism_name: Streptomyces sp. NPDC048696

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Lunds Universitet


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Spirochaetes bacterium RBG_16_49_21

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__unclassified Spirochaetota;s__Spirochaetes bacterium RBG_16_49_21


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacillales bacterium UBA6415

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC005388


ncbi_country: Australia: NSW

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: Brazil: Sao Paulo; SP

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Center for Biotechnology


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_submitter: Emory University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: soil

ncbi_organism_name: Shouchella lehensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Pseudomonas sp.


ncbi_country: USA: WY; Yellowstone National Park

ncbi_isolation_source: microbial mat located in an alkaline silicious hot spring; Mushroom Spring; in the Lower Geyser Basin

ncbi_organism_name: Synechococcus sp. 65AY6A5

ncbi_submitter: DOE JGI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB241_529B19

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Yangzhou University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: lake water

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Chryseomicrobium aureum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York

ncbi_isolation_source: Human Clinical (blood)

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Genskey


ncbi_country: Czech Republic: Pardubice region

ncbi_isolation_source: genital tract swabs

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: State Veterinary Institute Prague


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M0160

ncbi_submitter: Broad Institute


ncbi_country: China: Shangqiu

ncbi_organism_name: Streptomyces sp. NEAU-H22

ncbi_submitter: School of life science


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Marinobacter sp. 2_MG-2023


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: USA: North Carolina

ncbi_isolation_source: urine

ncbi_submitter: JCVI


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: China: Zhejiang

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The First Affiliated Hospital of Medical College, Zhejiang University


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Streptomyces flaveolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: China: Shantou

ncbi_isolation_source: pond water

ncbi_organism_name: Azonexaceae bacterium s22

ncbi_submitter: Shantou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Australia

ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: ETH Zuerich


ncbi_country: USA: New York City

ncbi_isolation_source: skin-AD site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Johnsonella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Agriculture, Faisalabad, Pakistan


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus dongliensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila subsp. ranae

ncbi_submitter: UFMG


ncbi_organism_name: Coprobacillaceae bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Phocoenobacter uteri

ncbi_submitter: SC


ncbi_organism_name: Vibrio mimicus VM603

ncbi_submitter: LNCC / UFRJ


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Croceicoccus sp.

ncbi_submitter: Harvard University


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Japan: Tateyama city

ncbi_isolation_source: Marine sponge Haliclona sp.

ncbi_organism_name: Streptomyces spongiae

ncbi_submitter: Kasetsart University


ncbi_organism_name: Desulfomicrobium sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium sp. GSP27

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico

ncbi_isolation_source: soil

ncbi_organism_name: Kribbella sandramycini

ncbi_submitter: MacLea Laboratory


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: CHRISTIAN MEDICAL COLLEGE


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: Bethesda

ncbi_isolation_source: fecal pellet

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Institutes of Health


ncbi_organism_name: Cytobacillus sp. FSL K6-0129

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Cytobacillus;x__unclassified Cytobacillus;s__Cytobacillus sp. FSL K6-0129


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp4 AA14

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp4 AA14

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Cellulomonas soli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Calcutta


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Psychrobacter alimentarius

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Bilophila wadsworthia


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Dickeya solani

ncbi_submitter: Medical University of Gdansk


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: microbial mat

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: caecum

ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Corynebacterium variabile DSM 44702

ncbi_submitter: Center of Biotechnology, Bielefeld University


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Anhui Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Texas; Weatherford

ncbi_isolation_source: abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human bile

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Osaka Institute of Public Health


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured beta proteobacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Synechococcales cyanobacterium PMM_0085

ncbi_submitter: University of Liege


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_country: USA: New York State

ncbi_isolation_source: Laboratory

ncbi_organism_name: Acetobacter senegalensis

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Candidatus Omnitrophica bacterium COP1

ncbi_submitter: Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophica bacterium COP1


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_isolation_source: unknown


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: South Africa: North-West

ncbi_isolation_source: drinking water from distribution plants

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: North-West University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Afipia sp.

ncbi_submitter: University of Utah


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: USA: MA

ncbi_isolation_source: shrimp

ncbi_submitter: FDA/CFSAN


ncbi_submitter: The University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Fudan University


ncbi_isolation_source: cold seep

ncbi_organism_name: Ardenticatenales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: China: Yangjiang

ncbi_isolation_source: Sewage

ncbi_organism_name: Citrobacter braakii


ncbi_country: Germany: Schenga

ncbi_isolation_source: Arbuscular mycorrhizae fungus

ncbi_organism_name: Pseudomonas sp. PSB11

ncbi_submitter: Leibniz-Institut fur Gemuse- und Zierpflanzenbau


ncbi_organism_name: uncultured Megasphaera sp.


ncbi_country: Portugal: wastewater treatment plant at Febros river; Vila Nova de Gaia

ncbi_isolation_source: biofilm; from a secondary decanter tank bank

ncbi_organism_name: Tychonema sp. LEGE 06208

ncbi_submitter: CIIMAR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Fimimonas gallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Ocean

ncbi_organism_name: Prochlorococcus marinus str. MIT 9314

ncbi_submitter: MIT

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 9314


ncbi_isolate: CFBP 6767

ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: CFBP 6767

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_assembly_name: freshwater MAG --- A14_bin-2120

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Turicimonas muris

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Australia

ncbi_isolation_source: swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Queensland Health Forensic and Scientific Services


ncbi_country: Viet Nam: Thai Binh

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Microthrixaceae bacterium


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum SCgG1

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Bioplatforms Australia


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0658

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Puglia; Foggia; San Marco in Lamis

ncbi_isolation_source: spleen; lymph nodes

ncbi_organism_name: Brucella abortus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia


ncbi_assembly_name: Rumen uncultured genome RUG14630

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Roseicyclus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Michigan


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site C

ncbi_isolation_source: Beach sand

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: USA: DE

ncbi_isolation_source: liver (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: University of Oldenburg


ncbi_organism_name: Clostridium perfringens SM101

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Frankfurt


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: CA

ncbi_isolation_source: caecum (Gallus gallus)


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: University of Auckland