ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


gtdb_representative: f

ncbi_organism_name: Marinovum sp. E06

ncbi_submitter: IAMM (Interactions Among Marine Microbes)


ncbi_isolate: VTEC

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Kansas

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_assembly_level: Scaffold

ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Medical Research Center for Phthisiopulmonology and Infection Disease


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_isolation_source: Other

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Veillonella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_name: Rumen uncultured genome RUG10245

ncbi_isolation_source: cattle rumen


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Flavobacterium arsenatis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Penn State


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Actinomyces oris

ncbi_submitter: EMG


ncbi_country: China: Xuzhou

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus aetherivorans

ncbi_submitter: Jiangsu Normal University


ncbi_organism_name: Helicobacter sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Microcoleus sp. S36b_B5

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Phormidium tenue FACHB-886

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_country: Netherlands

ncbi_isolation_source: tap water

ncbi_organism_name: Legionella pneumophila subsp. pneumophila

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Canada: Toronto

ncbi_submitter: University of Toronto


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: University of Queensland


ncbi_country: USA: Philadelphia

ncbi_isolation_source: stool

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_organism_name: uncultured Arenibacter sp.

ncbi_submitter: EMG


ncbi_submitter: Children's Hospital of Shanghai


ncbi_assembly_name: Rumen uncultured genome RUG10796

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: New Zealand: Wai-iti river; Nelson

ncbi_isolation_source: freshwater Microcoleus biofilm

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of Auckland


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Jiangxi; Yinshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella aerogenes


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Campylobacter curvus DSM 6644

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: Australia: Adelaide

ncbi_organism_name: Enterococcus faecalis BM4654

ncbi_submitter: Broad Institute


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA2496


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Roseburia faecis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces sp. SID8380

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_country: USA: mouth of the Rio Grande

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Mesorhizobium sp. M0016

ncbi_submitter: Washington State University


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Bubeng

ncbi_isolation_source: termite gut

ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Chile

ncbi_isolation_source: activated sludge of kraft-pulp mill effluents

ncbi_organism_name: Klebsiella sp.

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_country: Japan

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho University


ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_country: USA: MO

ncbi_isolation_source: porcine pig intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_submitter: University of Wyoming


ncbi_organism_name: Eubacterium sp. CAG:180

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:180


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Lake Washington

ncbi_organism_name: Methylobacter sp. UBA6701


ncbi_country: Russia: Moscow

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: IBCH RAN


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf108

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Italy

ncbi_isolation_source: minced meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: France

ncbi_organism_name: Vibrio aestuarianus subsp. francensis

ncbi_submitter: IFREMER


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: STATION BIOLOGIQUE DE ROSCOFF


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: University of Liege


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae UCI 22

ncbi_strain_identifiers: UCI 22

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 22


ncbi_isolation_source: intestinal contents of termite Nasutitermes nigriceps

ncbi_organism_name: Sporomusa termitida

ncbi_submitter: Georg-August-University Goettingen


ncbi_organism_name: Erysipelothrix sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: UFU J40

ncbi_submitter: The Xanthomonas Threats project


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. SKLX107298

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: EMG


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. NPDC101152


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Trichlorobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: northwestern Lake Huron

ncbi_isolation_source: purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink holes collected from 2007 through 2012

ncbi_organism_name: bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University Hospital Frankfurt


ncbi_assembly_name: Blastochloris viridis genome

ncbi_organism_name: Blastochloris viridis

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: faeces

ncbi_submitter: UNIVERSITY OF MELBOURNE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: cold seep

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: gold mine

ncbi_organism_name: Paenibacillus silvae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Florida

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_assembly_level: Chromosome

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Tongji University


ncbi_organism_name: Streptomyces sp. NPDC046727

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Paracoccus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Perineum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leeds


ncbi_country: Belgium: Antwerp

ncbi_isolation_source: Hepato/biliary

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cliniques Universitaires Saint-Luc


ncbi_assembly_name: IMG-taxon 2639762715 annotated assembly

ncbi_organism_name: Pseudomonas extremorientalis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: NY

ncbi_isolation_source: CSF

ncbi_organism_name: Staphylococcus aureus DAR1293


ncbi_country: USA: BIFSCo Region 2

ncbi_isolation_source: stool

ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. CDC 2009K-2059


ncbi_country: China: Yunnan Province

ncbi_isolation_source: river water

ncbi_organism_name: Vogesella indigofera

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_country: Belgium: Ghent

ncbi_organism_name: Sphingopyxis sp. NFH-91

ncbi_submitter: Ghent University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_isolate: Lactiplantibacillus plantarum ATCC14431

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: Lactiplantibacillus plantarum ATCC14431

ncbi_submitter: INRAE


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Streptomyces albus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: marine environment

ncbi_organism_name: Enhygromyxa salina

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: Russia: Leningrad oblast;Belogorka area

ncbi_isolation_source: Plant seeds

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: ARRIAM


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium UBA4664

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4664


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Thiorhodococcus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Russia: Khabarovsk

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Federal Service on Customers’ Rights Protection and Human Well-Being Surveillance


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_country: China: Wenzhou

ncbi_isolation_source: mangrove sediments

ncbi_organism_name: Bacillus sp. V3

ncbi_submitter: Third Institute of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. V3


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Xiamen University


ncbi_country: Brazil: Belo Horizonte

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Massachusetts Eye and Ear Infirmary/Harvard Medical School


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 78 (4-2735946)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 78 (4-2735946)


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: blood culture

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Janthinobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_submitter: College of Veterinary Medicine


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Shigella sonnei str. Moseley

ncbi_strain_identifiers: Moseley

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Pseudomonas oleovorans ERA

ncbi_organism_name: Ectopseudomonas oleovorans

ncbi_strain_identifiers: ERA

ncbi_submitter: Rutgers University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human skin

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Helicobacteraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: [Eubacterium] sulci


ncbi_country: South Korea

ncbi_isolation_source: sediment of a eutrophic reservoir

ncbi_organism_name: Sphingomonas daechungensis

ncbi_submitter: Kyung Hee University


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC058783

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Houston

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_submitter: Center for Microbial Communities


ncbi_country: China: South China Sea

ncbi_isolation_source: Synechococcus sp. YX04-3 co-culture from sea water

ncbi_organism_name: Allomuricauda sp.

ncbi_submitter: Synechococcus sp. YX04-3


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0225

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: lunchmeat

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008286


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Falsirhodobacter sp. 1013

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_submitter: Shinshu university hospital


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rochdale


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Caldimicrobium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. SudanB66_2053

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: uncultured Flavobacterium sp.


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Australia: Orpheus Island

ncbi_isolation_source: seawater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacillota bacterium LX-D

ncbi_strain_identifiers: LX-D

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium LX-D


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: uncultured Chryseobacterium sp.


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_assembly_name: uncultured Amylibacter sp. SW02_Bin8

ncbi_submitter: iBB-IST


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Roseovarius sp.

ncbi_submitter: East China University of Science and Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Japan: Toyoake

ncbi_submitter: Fujita Health University Hospital


ncbi_strain_identifiers: ATCC 9607

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Worthington;x__Salmonella enterica subsp. enterica serovar Worthington str. ATCC 9607


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: sea water

ncbi_organism_name: Phaeobacter italicus

ncbi_strain_identifiers: CECT 7321

ncbi_submitter: UVEG


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: Rumen uncultured genome RUG13584

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Streptomyces sp. SID7813

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: DSMZ Isolate

ncbi_organism_name: Streptomyces californicus

ncbi_submitter: US Food and Drug Administration


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__environmental samples;s__uncultured Candidatus Marinamargulisbacteria bacterium


ncbi_country: Brazil: Eastern Amazon

ncbi_isolation_source: forest soil

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA128

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NHGRI/NIH


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Paenibacillus larvae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: FL

ncbi_isolation_source: Human

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: USA: Loyalsock Creek; Montoursville; PA

ncbi_isolation_source: freshwater

ncbi_organism_name: Chryseobacterium sp. LC2016-27

ncbi_submitter: Lycoming College


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Malaysia: Kelantan; Hospital Universiti Sains Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: UNIVERSITI SAINS MALAYSIA


ncbi_country: China: HeNan

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Sunxiuqinia sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Staphylococcus lugdunensis VCU139

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Canada: Victoria

ncbi_isolate: neo

ncbi_isolation_source: U. Victoria line

ncbi_organism_name: Spiroplasma poulsonii

ncbi_strain_identifiers: neo

ncbi_submitter: University of Rochester


ncbi_assembly_name: Salmonella enterica CVM N51288 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Malaya


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: uncultured Neisseriaceae bacterium

ncbi_submitter: EMG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 58 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Moraxellaceae bacterium


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C458_10

ncbi_submitter: IGS


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Bombella sp. ESL0378

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Florida

ncbi_isolation_source: root nodules

ncbi_organism_name: Bacillus licheniformis


ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: feces

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Russia: Ekaterinburg

ncbi_isolation_source: lungs

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics Russian Academy of Sciences


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia

ncbi_submitter: SC


ncbi_isolation_source: no data

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Mauritius

ncbi_isolate: wMau

ncbi_organism_name: Wolbachia endosymbiont of Drosophila mauritiana

ncbi_strain_identifiers: wMau

ncbi_submitter: University of California, Davis


ncbi_organism_name: Eshraghiella crossota

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: female urogenital tract

ncbi_organism_name: Corynebacterium amycolatum

ncbi_strain_identifiers: ICIS 5

ncbi_submitter: Institute of Cellular and Intracellular Symbiosis Russian Academy of Sciences


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: Portugal: Praia de Burgau; Budens

ncbi_isolation_source: intertidal zone; wave-sheltered zone; sand

ncbi_organism_name: Cyanobium sp. LEGE 06143

ncbi_submitter: CIIMAR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: American Type Culture Collection (ATCC)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_isolation_source: Caecum


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


gtdb_type_species_of_genus: t

ncbi_country: Japan: Hokkaido; Kushiro; Lake Harutori

ncbi_isolation_source: sediment of a brackish meromictic lake

ncbi_organism_name: Limnochorda pilosa

ncbi_submitter: The Institute of Low Temperature Science


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Benin: Ketou

ncbi_organism_name: Periweissella beninensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: water tap

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Toho University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Loc090721-4m_bin-0720

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Halomonas sp. AOP7-B1-5

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Streptomyces achromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Pseudonocardia lutea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: national health research institutes


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Netherlands

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sanya

ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura sp. NEAU-AAG7

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Alistipes communis

ncbi_submitter: EMG


ncbi_isolation_source: digested compost

ncbi_organism_name: Paenibacillus thermoaerophilus

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: seawater

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: China: Guangdong

ncbi_submitter: South China Agricultural University


ncbi_country: USA: Massachusetts; East Wareham

ncbi_isolation_source: berry surface

ncbi_organism_name: Pseudomonas sp. MWU354

ncbi_submitter: Midwestern University


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Roraima

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: USA

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_organism_name: Azospirillaceae bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Crocinitomix sp.


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: kombucha

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Baskent University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridiales bacterium VE202-03

ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Bifidobacterium adolescentis ATCC 15703

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Universite Laval


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Eggerthella lenta


ncbi_country: India: Ogawa

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Planococcus citreus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: forest soil

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Groningen


ncbi_organism_name: Nocardia shimofusensis NBRC 100134

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Streptobacillus moniliformis

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: AnimalBiome


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Ancona

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: China: Beijing

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Bacillus subtilis PY79

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis PY79


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_strain_identifiers: NCTC 8718

ncbi_submitter: Campden BRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Banana


ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: blood

ncbi_submitter: The National University of Malaysia (UKM)


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Qipengyuania citrea

ncbi_submitter: University of Southern California


ncbi_country: China

ncbi_isolation_source: sea-mud

ncbi_organism_name: Sphingomonas sp. WG

ncbi_strain_identifiers: WG

ncbi_submitter: China University of Petroleum (East China)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: USDA-ARS


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halomicronema sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Wyoming

ncbi_isolation_source: Aquatic Environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 1

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Arizona State University


ncbi_organism_name: Lonsdalea populi

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India: Himachal Pradesh

ncbi_isolation_source: Chanda river in cold deserts of Lahaul and Spiti

ncbi_organism_name: Planococcus glaciei CHR43

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology, Palampur


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolate: Candidatus Eisenbacteria sp. RBC018

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured bacterium

ncbi_strain_identifiers: Candidatus Eisenbacteria sp. RBC018

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing University of Chinese Medicine


ncbi_organism_name: Moheibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Thermovenabulum sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Sedimentisphaeraceae bacterium JB056

ncbi_submitter: JNTUH


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas gessardii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Phocaeicola dorei


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Lentisphaerota bacterium

ncbi_submitter: Kiel University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: University of Southampton


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus sp. C89

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Variovorax boronicumulans NBRC 103145

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Methylocella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston; Massachusetts

ncbi_isolation_source: Abd Wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B9(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Nocardia farcinica

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Shenzhen

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: BGI


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: terrestrial

ncbi_organism_name: Exiguobacterium sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lethbridge; AB

ncbi_isolation_source: whole pupae

ncbi_organism_name: Arsenophonus nasoniae

ncbi_submitter: University of Liverpool


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Brachybacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Ireland

ncbi_submitter: University of Galway


ncbi_country: Canada: Alberta

ncbi_isolation_source: throat

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: marine

ncbi_organism_name: Dehalococcoidia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam: Dak Lak

ncbi_isolation_source: root and surrounding soil

ncbi_organism_name: Streptomyces sp. CYG21

ncbi_submitter: Institute of Biotechnology, Vietnam Academy of Science and Technology


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_country: India: Karnataka

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sulfuricurvum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Sichuan University of Science & Engineering


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: Luteimonas sp. gir

ncbi_strain_identifiers: gir

ncbi_submitter: Gateway Technical College


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Enterobacter sichuanensis

ncbi_submitter: Institute of Zoology, CAS


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: China: Fujian; Fujian Province

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis CCDC5079

ncbi_submitter: Beijing Genomics institute and National Institue for Communicable Disease Control and Prevention


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Chile: Libertador Bernando O Higgins

ncbi_submitter: Ponitificia Universidad Catolica de Chile

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Actinosynnema sp. NPDC047251

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Vienna


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Glycomyces terrestris

ncbi_submitter: Yunnan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_country: Netherlands: Groningen

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: unverisity medical center groningen


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Chazhemtobacterium sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__Microgenomates group incertae sedis;f__Candidatus Chazhemtobacteraceae;g__Candidatus Chazhemtobacterium;x__unclassified Candidatus Chazhemtobacterium;s__Candidatus Chazhemtobacterium sp.


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: BGI


ncbi_country: Chile

ncbi_isolation_source: Liver

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: ADL Diagnostic Chile Ltda


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: Minnesota

ncbi_isolation_source: feces

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1435

ncbi_submitter: Broad Institute


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Duke University


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA3109

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacillus vallismortis DV1-F-3

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus vallismortis;x__Bacillus vallismortis DV1-F-3


ncbi_organism_name: Pseudomonas sp. RTB3

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: France

ncbi_isolation_source: tissue

ncbi_submitter: CEBITEC


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Honduras

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: South Korea: Jinju

ncbi_isolation_source: urine

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_isolation_source: marine

ncbi_organism_name: Bacteroidota bacterium


ncbi_country: USA: Athens; GA

ncbi_isolation_source: cow feces

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Selenomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: Plaque (caries +)

ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: King's College London


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: GA

ncbi_isolation_source: Young Chickens

ncbi_strain_identifiers: CVM N60299F

ncbi_submitter: FDA


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Meridianimarinicoccus sp.

ncbi_submitter: Nanjing University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chiang Mai University


ncbi_organism_name: Salmonella sp. SAL04216

ncbi_submitter: Zhejiang university


ncbi_organism_name: Candidatus Fimisoma avicola

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__;g__Candidatus Fimisoma;s__Candidatus Fimisoma avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimisoma;s__Candidatus Fimisoma avicola


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: USA: Pennsylvania; Porcupine Run

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of California Davis


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH01012

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Beijing

ncbi_submitter: General Hospital


ncbi_organism_name: Jeotgalicoccus sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Yunnan

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Paenibacillus tepidiphilus

ncbi_strain_identifiers: SYSU G01001

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Guangzhou

ncbi_organism_name: Escherichia coli


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas citri pv. punicae

ncbi_submitter: University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. punicae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudogracilibacillus sp.


ncbi_country: Taiwan: Kaohsiung

ncbi_isolation_source: Tilapia; diseased

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Academia Sinica


ncbi_country: Peru: Cuzco

ncbi_isolation_source: alpaca feces

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Fayetteville AR

ncbi_isolation_source: Grower Feed

ncbi_organism_name: Pantoea vagans

ncbi_submitter: Pittsburg State University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 1110802883

ncbi_submitter: Broad Institute


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Escherichia ruysiae

ncbi_submitter: McGill University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Pseudoalteromonas sp. B137

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Agrobacterium leguminum

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: Colorado State University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium cadaveris

ncbi_submitter: EMG


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: United Kingdom

ncbi_isolation_source: Farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Nottingham


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Minnesota


ncbi_organism_name: Photorhabdus heterorhabditis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: China: Shandong; Dongying

ncbi_isolation_source: non-rhizosphere soils

ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Guangzhou Institute of Geochemistry, Chinese Academy of Sciences


ncbi_organism_name: Enterobacter sp. MGH 11

ncbi_strain_identifiers: MGH 11

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 11


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanghai

ncbi_isolation_source: Vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Taiwan

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Taipei Medical University


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Flavobacterium alvei

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0008


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Salmonella sp. NW682

ncbi_submitter: Sichuan University


ncbi_country: USA:Rhode Island; Providence

ncbi_isolation_source: urban freshwater stream

ncbi_organism_name: Pantoea sp. SOD02

ncbi_submitter: Providence College


ncbi_country: South Korea: Soesokkak

ncbi_organism_name: Pontixanthobacter aquaemixtae

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Malaysia

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_organism_name: Listeria innocua

ncbi_submitter: University of Dhaka


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: saliva

ncbi_organism_name: Moraxella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: Australia

ncbi_isolation_source: blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_country: Brazil

ncbi_isolation_source: nodules of cowpea collected from a semi-arid region

ncbi_organism_name: Microvirga vignae

ncbi_submitter: Embrapa Agrobiologia


ncbi_country: Australia: Perth

ncbi_submitter: University of Western Australia


ncbi_organism_name: Streptomyces sp. bgisy029

ncbi_submitter: BGI Research


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella sp. 14ESS1282

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Finland

ncbi_organism_name: Yersinia mollaretii


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: uncultured Spirochaetia bacterium


ncbi_organism_name: Burkholderia pseudomallei


ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SPRUCE 43

ncbi_organism_name: Syntrophales bacterium

ncbi_strain_identifiers: SPRUCE 43

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Peptoclostridium sp. UBA4559

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Yangzhou University


ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. AQ5-05

ncbi_submitter: Universiti Putra Malaysia


ncbi_organism_name: Bifidobacterium hominis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Skermanella pratensis

ncbi_submitter: Biotechnology Research Institute


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Endomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: gut content

ncbi_organism_name: Escherichia coli

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: China: Hubei

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Candidatus Neomicrothrix sp. UBA2155

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__unclassified Candidatus Neomicrothrix;s__Candidatus Neomicrothrix sp. UBA2155


ncbi_country: Canada: Ontario;Toronto

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: UFMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Polymorphospora lycopeni

ncbi_submitter: HeBui University


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Texas

ncbi_isolation_source: Secondary wastewater

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Marinacidobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;x__unclassified Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium sp.


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Austria: Neusiedler See

ncbi_isolation_source: zooplankton

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: gut contents

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RMIT


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Colon


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Esbjerg E

ncbi_isolation_source: activated sludge from EsbE_18-Q3-R3-47

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Peru

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Cepheid


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Synechococcus sp. AG-676-C06

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Duncaniella muricolitica


ncbi_country: Czech Republic: Ortvinovice

ncbi_isolation_source: Mud with water; below a pond dam

ncbi_organism_name: Acinetobacter sp. ANC 4641

ncbi_submitter: National Institute of Public Health


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_country: USA: Virginia

ncbi_isolation_source: Precipitation

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Virginia Tech


ncbi_isolation_source: lake water

ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: AR

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Bacillus cereus HuA2-4

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus HuA2-4


ncbi_assembly_name: Rumen uncultured genome RUG14227

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Argentina

ncbi_isolation_source: abdominal fluid

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_country: Pakistan: Punjab; Attock

ncbi_isolation_source: bone marrow of diseased cattle with haemorrhagic septicaemia

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_strain_identifiers: ATTK

ncbi_submitter: Murdoch University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Novilysobacter ciconiae

ncbi_submitter: KyungHee University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Rumen uncultured genome RUG14180


ncbi_organism_name: Escherichia coli

ncbi_submitter: Belarusian State University


ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: human gut

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Campylobacter sp.


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Jannaschia sp. Os4

ncbi_submitter: Shandong University,Weihai


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Institute for Plant Protection, National Agriculture and Food Research Organization

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Xylophilus sp. ASV27

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Xylophilus;x__unclassified Xylophilus;s__Xylophilus sp. ASV27