ncbi_assembly_name: Velvet for BPAC1100

ncbi_organism_name: Paraburkholderia phenoliruptrix AC1100

ncbi_submitter: School of Molecular Biosciences, Washington State University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Poland

ncbi_genome_representation: full

ncbi_organism_name: Citrobacter sp. wls707

ncbi_submitter: NanKai universit


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Bacillus sp. FSL L8-0215

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL L8-0215


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: CAAS


ncbi_country: Japan: Chiba

ncbi_organism_name: Pseudomonas syringae pv. maculicola

ncbi_strain_identifiers: SUPP 2206

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. maculicola


ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_country: Algeria: Western

ncbi_isolation_source: soil

ncbi_organism_name: Kaistella solincola

ncbi_refseq_category: reference genome

ncbi_submitter: GCAT-SEEK

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: IMG-taxon 2667527211 annotated assembly

ncbi_organism_name: Pseudomonas abietaniphila

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Anaeromyxobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: UNIVERSITY OF HELSINKI


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Segatella intestinalis

ncbi_submitter: Kyungpook National University School of Medicine


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25493_5

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_country: China: Jilin

ncbi_organism_name: Commensalibacter sp. M0268

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_organism_name: Blautia sp. OM05-6

ncbi_submitter: BGI


ncbi_organism_name: Lactobacillus johnsonii

ncbi_strain_identifiers: CIRM-BIA 2079

ncbi_submitter: Brigham Young University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Italy: Cesena

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Gardnerella vaginalis HMP9231

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Farm environmental

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas sp. GD03657

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bifidobacteriaceae bacterium MCC01995

ncbi_submitter: Moringa milk industry co., ltd.


ncbi_country: China: Beijing city

ncbi_organism_name: Pseudomonas kurunegalensis

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_country: France

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: WTSI


ncbi_assembly_name: Rumen uncultured genome RUG579

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: tea garden

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chengdu University


ncbi_organism_name: bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Centre National pour la Recherche Scientifique et Technique (CNRST)


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Monash University


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Syntrophaceticus sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Thermoanaerobacterales;f__Thermoanaerobacterales Family III. Incertae Sedis;g__Syntrophaceticus;x__unclassified Syntrophaceticus;s__Syntrophaceticus sp.


ncbi_country: Belgium: Beverlo

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Sphingobacterium sp. B29

ncbi_submitter: Thompson Rivers University


ncbi_country: Brazil: Sao Paulo;SP

ncbi_isolation_source: Eye

ncbi_organism_name: Mycobacteroides saopaulense

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Candidatus Merdousia gallistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric antrum

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: DS-I Africa


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Fujian

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Desulfovibrio piger


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Industrial Technology Development Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB1517

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB1517


ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: Temple University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2595698206 annotated assembly

ncbi_organism_name: Salegentibacter salinarum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Saprospiraceae bacterium


ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Oregon State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Clostridium sulfidigenes


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: uncultured Albidiferax sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Antarctica

ncbi_organism_name: Brevibacterium sp. PAMC21349

ncbi_submitter: Korea University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: environmental

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA4422

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France: Lille

ncbi_isolation_source: meconium

ncbi_submitter: Laboratoire regional de recherche en agroalimentaire et biotechnologies


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Memphis; Nebraska

ncbi_organism_name: Rahnella aquatilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Kazakhstan: West-Kazakhstan

ncbi_isolation_source: tissue

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: National Center for Biotechnology


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_country: Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: Korea National Institute of Health


ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: USA: Utah; the Great Salt Lake

ncbi_isolation_source: salt lake

ncbi_organism_name: Halomonas sp. CUBES01

ncbi_submitter: Stanford University


ncbi_country: Uganda: Bombo Military Hospital

ncbi_isolation_source: urine

ncbi_submitter: Makerere University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pantoea vagans

ncbi_submitter: FONDAZIONE EDMUND MACH


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Chicago


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Heyuan City; Guangdong Province

ncbi_isolation_source: stool

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: human gut


ncbi_organism_name: Buttiauxella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: North Carolina; Durham

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: BGI


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany

ncbi_isolation_source: feed

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: Germany: Karlsruhe

ncbi_organism_name: Gordonibacter urolithinfaciens

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Mianyang

ncbi_isolation_source: mud

ncbi_organism_name: Syntrophomonas sp. UBA5504

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: plantarum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: China: Deyang; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Center for Microbial Communities


ncbi_country: Greece

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Oceanicoccus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: China Agricultural University


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Denmark: North Jutland

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: South Africa

ncbi_isolation_source: Freeze dried sample

ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Veterinary Biotechnology


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Veillonella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: McGill University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_isolation_source: food processing facility

ncbi_organism_name: Microbacteriaceae bacterium PS02071

ncbi_submitter: Penn State University


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: NH; DHMC

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Dartmouth College


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: oral cavity

ncbi_organism_name: Veillonella atypica KON

ncbi_strain_identifiers: KON

ncbi_submitter: Washington University


ncbi_organism_name: Heliomicrobium modesticaldum Ice1

ncbi_strain_identifiers: ATCC 51547;Ice1

ncbi_submitter: Arizona State University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Oceanicaulis sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: KU Leuven


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Chongqing medical university


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Firmicutes bacterium UBA5499

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5499


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Candidatus Poriferihabitaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Streptomyces sp. NPDC059849

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis EnGen0106

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_assembly_name: freshwater MAG --- Loc090402-4m_bin-0236

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: China: sewage sludge of the Wastewater Treatment Plant of Sanming Steel Co. Ltd; Fujian

ncbi_isolation_source: sewage sludge

ncbi_organism_name: Aminobacterium sp. MB27-C1

ncbi_submitter: Sanming University


ncbi_organism_name: Paludibacteraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shangluo

ncbi_isolation_source: leaf mold

ncbi_organism_name: Streptomyces pratensis

ncbi_submitter: Northwest A & F University


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: drain

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_country: USA

ncbi_isolation_source: Tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_organism_name: uncultured Rothia sp.

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean: Portugal; Azores

ncbi_isolation_source: water from hydrothermal vent

ncbi_organism_name: Thermosipho sp. 1070

ncbi_submitter: University of Oslo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho;x__unclassified Thermosipho (in: thermotogales);s__Thermosipho sp. 1070


ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Najit Technologies, Inc.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: spacecraft hardware

ncbi_organism_name: Paenibacillus spiritus

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Companilactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: The University of Queensland


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: China: Suzhou

ncbi_organism_name: Lachnoclostridium sp. MSJ-17

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at Dallas


ncbi_country: South Africa: Lokaleng Village; Mahikeng

ncbi_isolation_source: fecal sample from diarrhoea affected cattle B

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: North-west University


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Megasphaera sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mexico: Puebla

ncbi_isolation_source: Peritoneal dialysis fluid

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: foregut

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Parepulonipiscium;x__unclassified Candidatus Parepulonipiscium;s__Candidatus Parepulonipiscium sp. PG-Nele67M_MBin01


ncbi_organism_name: Negativicoccus succinicivorans

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Glutamicibacter sp.

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gallimonas intestinalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinalis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas intestinalis


ncbi_organism_name: Candidatus Actinomarina sp.

ncbi_submitter: Xiamen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__unclassified Candidatus Actinomarina;s__Candidatus Actinomarina sp.


ncbi_country: Hungary

ncbi_organism_name: Pseudomonas amygdali pv. tabaci

ncbi_strain_identifiers: ICMP 2835

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. tabaci


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Australia: Newcastle

ncbi_organism_name: Roseburia hominis

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG12525

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus sanguinicola

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Phycisphaerales bacterium UBA1924


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolate: SPRUCE 85

ncbi_organism_name: Opitutaceae bacterium

ncbi_strain_identifiers: SPRUCE 85

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Tunisia: Kairouan

ncbi_isolation_source: root

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: CBBC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: lake water

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis ERV129

ncbi_submitter: Washington University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: Cameroon: Ebogo I; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Holosporales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Porphyromonas circumdentaria

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_organism_name: Aeromicrobium sp. NPDC092404

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Anhui

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- VK1_bin-0420

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas sp. Z5-35

ncbi_submitter: KAUST


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Kansas State University


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Antarctica

ncbi_isolation_source: sea-ice

ncbi_organism_name: Glaciecola punicea

ncbi_submitter: University of Tasmania


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hexactinellid isolated at 868 m depth

ncbi_organism_name: Olleya marilimosa

ncbi_submitter: University of Bristol


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Proteobacteria bacterium TMED61

ncbi_submitter: Tara Oceans Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium TMED61


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4204

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Paenibacillus naphthalenovorans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus mobilis


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Xanthomonas protegens

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Novosphingobium sp.


ncbi_organism_name: Priestia megaterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: uncultured Alteromonadaceae bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Gammaproteobacteria bacterium UBA4582

ncbi_submitter: University of Queensland


ncbi_isolation_source: Temperate peat swamp forest soil

ncbi_organism_name: Acrocarpospora phusangensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Corynebacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Pakistan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: FDA


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: freshwater MAG --- LaPlata-a_bin-1813

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: cold seep

ncbi_organism_name: Kangiellaceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Weissella hellenica

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides congonensis


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 21

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mesorhizobium sp. M0778

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: addis ababa university


ncbi_country: China: Chongqing

ncbi_isolation_source: pneumonic lungs

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Southwest University


ncbi_organism_name: Dietzia cinnamea NBRC 102147

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Dietziaceae;g__Dietzia;s__Dietzia cinnamea;x__Dietzia cinnamea NBRC 102147


ncbi_country: Netherlands: Hoogmade

ncbi_isolation_source: root nodule

ncbi_organism_name: Frankia sp. AgPm24

ncbi_submitter: Texas State University


ncbi_country: Germany

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China

ncbi_isolation_source: lung

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EBI


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Candidatus Fimivivens sp.

ncbi_submitter: University of Iowa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivivens;x__unclassified Candidatus Fimivivens;s__Candidatus Fimivivens sp.


ncbi_isolation_source: trachea

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The laboratory of genetics and plant breeding, The National institute of Agronomy of Tunis


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Germany: Darss-Zingst Bodden Chain

ncbi_isolation_source: water

ncbi_organism_name: Pseudomonas sp. LG1E9

ncbi_submitter: Bowling Green State University


ncbi_country: France: Pays de la Loire

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: USA: Virginia

ncbi_isolation_source: white-tailed deer feces

ncbi_organism_name: Pseudomonas sp. 14P_8.1_Bac3

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Ohio

ncbi_isolation_source: aspirate

ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_organism_name: Oscillatoriales cyanobacterium bin_317

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_isolation_source: SIP-labeled bacteria involved in mucosal sugar uptake in the mouse colon

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Vienna


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Laboratory of Veterinary Bacteriology UFRGS


ncbi_isolation_source: Hospital

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: university of rennes1


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


gtdb_type_species_of_genus: t

ncbi_organism_name: Variibacter gotjawalensis

ncbi_strain_identifiers: CECT 8514

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: DinsdaleLab Sequences


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Monash University


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_strain_identifiers: JNXO

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: URMITE


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: India

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: hydrothermal vent sediment; AOM enrichment culture at 70 degrees Celsius

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: regolith

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-1213

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Lamprocystis sp.

ncbi_submitter: BILS


ncbi_country: USA: MA

ncbi_isolation_source: house mouse feces (Mus musculus)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Tianjin Nankai Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EMG


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F63179

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-WM

ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Oceanicoccus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: unknown


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 607307-6


ncbi_country: Puerto Rico: YABUCOA

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Brachyspira sp.


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Streptomyces sp. NPDC059863


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_submitter: Inha University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Rostov State Medical University


ncbi_country: USA: Alaska

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou

ncbi_isolation_source: Sewage from zoo

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Metabacillus sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: Sea sediment

ncbi_organism_name: Rhodobacteraceae bacterium LMO-JJ12

ncbi_submitter: Shanghai Jiao tong University


ncbi_organism_name: Burkholderia ubonensis MSMB22

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Spain

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CHU A Coruna


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-9098

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sulfuricurvum sp.

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_isolation_source: Caecum

ncbi_organism_name: Dubosiella newyorkensis


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Portland State University


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_country: China: Dongshan;Zhangzhou; Fujian

ncbi_isolation_source: liver

ncbi_organism_name: Vibrio rotiferianus

ncbi_submitter: Fisheries Research Institute of Fujian Province


ncbi_country: USA: OR

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM003

ncbi_submitter: IGS


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Fujian; Xiamen

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Fujian Provincial Center for Disease Control and Prevention


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Anaerolineales bacterium


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Klebsiella sp. CN_Kp066

ncbi_submitter: Max Rubner-Institut


ncbi_country: Poland

ncbi_isolation_source: dairy

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Priestia flexa

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Cyanobacteria bacterium P01_H01_bin.21

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_H01_bin.21


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: University of Chicago


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: limestone wall of ancient building

ncbi_organism_name: Petrachloros mirabilis ULC683

ncbi_submitter: Centre for Functional Diversity


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mucispirillum schaedleri


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: United Kingdom: Hollywood; Northern ireland

ncbi_isolation_source: Northern Irish Seawater

ncbi_organism_name: Halobacteriovorax sp. JY17

ncbi_submitter: Queens University Belfast


ncbi_organism_name: Prevotella pallens

ncbi_submitter: SC


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Caldilineae bacterium

ncbi_submitter: Stanford University


ncbi_country: Germany

ncbi_isolation_source: lung

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Portland State University


ncbi_assembly_name: Rumen uncultured genome RUG14648

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Burkholderiaceae bacterium


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: naresuan university


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Aequorivita soesokkakensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Salmonella sp. C3246

ncbi_submitter: Sichuan University


ncbi_organism_name: Tenuifilum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: uncultured Eudoraea sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0305260.7

ncbi_submitter: IGS


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Saprospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Segatella salivae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Streptomyces sp. NPDC050732

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: McGill University


ncbi_country: Australia

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: CDC


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-3365

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM43


ncbi_organism_name: Lawsonella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pectobacterium atrosepticum SCRI1043

ncbi_submitter: Sanger Institute


ncbi_country: Lebanon

ncbi_isolation_source: bronchial lavage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 132

ncbi_submitter: SC


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Shanghai Ocean University


ncbi_assembly_name: freshwater MAG --- MJ_bin-1958

ncbi_organism_name: uncultured Micrococcales bacterium


ncbi_country: South Korea: Jeollanam-do

ncbi_isolate: MFDS

ncbi_isolation_source: cuttlefish

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: University of California, Berkeley


ncbi_submitter: The Jackson Laboratory


ncbi_country: China: Tengzhou

ncbi_isolation_source: sputum

ncbi_submitter: University College London (UCL)


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Candidatus Neoarthromitus;x__environmental samples;s__uncultured Candidatus Neoarthromitus sp.


ncbi_country: Turkey

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Black Sea Agricultural Research Institute


ncbi_organism_name: uncultured Atopobium sp.


ncbi_country: Italy: Ancona

ncbi_isolation_source: marine sediment

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universita Politecnica delle Marche


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterellaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Clostridium sp.

ncbi_submitter: China Agricultural University


ncbi_country: Brazil: Sao Gabriel da Cachoeira

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: India: Arunachal Pradesh

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Case Western Reserve University School of Medicine


ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: Universidad Tecnologica Metropolitana (UTEM)


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_assembly_name: methb

ncbi_organism_name: Candidatus Methylobacter favarea

ncbi_submitter: RADBOUD UNIVERSITY


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Ghana: Nima Market; Accra

ncbi_isolation_source: wagashi (unripened soft cheese)

ncbi_strain_identifiers: NRWCIVA

ncbi_submitter: Alborada Research Fund

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Legon


ncbi_country: China

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_assembly_name: Rumen uncultured genome RUG10695

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Enterobacter mori

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium striatum

ncbi_strain_identifiers: ACRQW

ncbi_submitter: NHGRI/NIH


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: Cornell University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Germany

ncbi_isolation_source: Gut

ncbi_strain_identifiers: Isolate-110 (HZI)

ncbi_submitter: UniKlinik RWTH Aachen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-110 (HZI)


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 14d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Germany: Cologne

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- KR_bin-0338

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lactobacillus acidophilus DSM 20242

ncbi_submitter: INRA STLO


ncbi_organism_name: Streptomyces sp. NPDC127177

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_isolation_source: Child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Malaya


ncbi_assembly_name: freshwater MAG --- T7-022_bin-591

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_country: Chile: Patagonia; Cahuelmo Fjord

ncbi_isolation_source: fresh feces collected from rock from a sea lion colony

ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Helicobacter pylori SA157C

ncbi_submitter: MHH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: France: Quimper

ncbi_isolation_source: Blood culture

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_isolation_source: PMM port 1 of International Space Station

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Pacific Ocean: South Pacific

ncbi_organism_name: Marinobacter sp. EhN04

ncbi_submitter: University of Alberta


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Micromonospora chalcea


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2346

ncbi_submitter: Broad Institute


ncbi_organism_name: Yersinia canariae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Germany: Freising

ncbi_isolation_source: feces

ncbi_organism_name: Bilifractor porci

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_isolation_source: fecal swab

ncbi_organism_name: Myroides odoratimimus

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Leuconostoc carnosum

ncbi_submitter: Agroscope


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nocardia sp. CA-120079

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Eubacterium sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Agrobacterium fabrum str. J-07

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Agrobacterium;x__Agrobacterium tumefaciens complex;s__Agrobacterium fabrum;x__Agrobacterium fabrum str. J-07


ncbi_country: China

ncbi_isolation_source: hospital sewage

ncbi_organism_name: Acinetobacter sp. SWAC5

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_country: South Korea

ncbi_isolation_source: Tidal flat

ncbi_organism_name: Flavobacterium sp. N503310

ncbi_submitter: Jeju National University


ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Dehalococcoides mccartyi


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Desulfobacteraceae bacterium


ncbi_submitter: Ark Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bryobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA

ncbi_organism_name: Listeria innocua

ncbi_submitter: Enteric Diseases Laboratory Branch, Centers for Disease Control and Prevention


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Streptomyces griseorubiginosus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella boydii

ncbi_submitter: icddr,b


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: Monash University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodobacter sp.


ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ignavibacterium album JCM 16511

ncbi_submitter: The Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;o__Ignavibacteriales;f__Ignavibacteriaceae;g__Ignavibacterium;s__Ignavibacterium album;x__Ignavibacterium album JCM 16511


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: 2887PM;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Peribacillus frigoritolerans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human milk

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Ocean University of China


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1882


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: Lachnospira multipara

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Mycoplasmoides gallisepticum

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Hospital Surface

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium RIFOXYA2_FULL_40_9


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. S1D4-23

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: Yellowstone National Park; Wyoming

ncbi_isolation_source: Sediment of Ink Pot Hot Spring

ncbi_organism_name: Thermodesulfobacterium commune DSM 2178

ncbi_submitter: TIGR


ncbi_organism_name: Campylobacter concisus


ncbi_isolation_source: salami paste production

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_organism_name: Microbacterium dextranolyticum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Qingdao

ncbi_isolation_source: feces

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shandong University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Kunming

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Mycolicibacterium goodii

ncbi_submitter: Research Institute of Tuberculosis


ncbi_country: Brazil: Minas_Gerais_1

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong First Medical University


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megasphaera elsdenii


ncbi_country: China: South China Sea

ncbi_isolation_source: Sea water

ncbi_organism_name: Pseudodesulfovibrio sp. JC047

ncbi_submitter: OUC


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H57815

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Shanghai East Hospital


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Halomonas sp.


ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Italy: Sicily

ncbi_organism_name: Brucella melitensis F5/07-239A


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Niabella sp.

ncbi_submitter: UNESP-FCAV


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangzhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Serratia surfactantfaciens

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Exiguobacterium sp. A1_3_1

ncbi_submitter: Texas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. A1_3_1


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: University of Parma


ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: bioreactor

ncbi_organism_name: Epsilonproteobacteria bacterium UBA1350

ncbi_submitter: University of Queensland


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Asticcacaulis sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Enterococcus sp. DIV1067f

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificales bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: New Zealand: Christchurch

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Canterbury


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fibrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pyramidobacter sp.


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TB_RSA19


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Tunisia

ncbi_isolation_source: hydrocarbon contaminated sediments in the North of Tunisia

ncbi_organism_name: Alcaligenes aquatilis

ncbi_submitter: Laboratory of Biotechnology and Bio-Geo resources Valorization


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Chile

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Texas A&M


ncbi_country: Mali

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Hallella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Marinobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Arsukibacterium tuosuense

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Malaysia

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori UM023

ncbi_submitter: UM-UNSW-MGRC


ncbi_country: Saudi Arabia

ncbi_organism_name: Escherichia coli


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Cyanide and thiocyanate bioreactor

ncbi_organism_name: Hyphomicrobium sp. SCN 65-11

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Spain: Madrid

ncbi_isolation_source: reisolated from a DSMZ cell culture

ncbi_organism_name: Azoarcus sp. CIB

ncbi_strain_identifiers: CIB

ncbi_submitter: CIB-CSIC


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute