ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Amedibacillus dolichus

ncbi_submitter: University of Chicago


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-1728

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_assembly_level: Scaffold

ncbi_organism_name: Escherichia coli O157:H7

ncbi_strain_identifiers: YZ

ncbi_submitter: Qingdao Agricultural University


ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Bern


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Thermomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Pirellulales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;x__environmental samples;s__uncultured Pirellulales bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Salmonella sp. s57359

ncbi_submitter: Zhejiang university


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Geobacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Streptomycetaceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Pyrinomonadaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Bacteriology, Graduate School of Medicine, Gunma University


ncbi_organism_name: Thalassospira sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Technical University of Denmark


ncbi_country: Denmark: Aarhus University Hospital Skejby

ncbi_organism_name: Haemophilus sputorum CCUG 13788

ncbi_submitter: BiRC

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: AK

ncbi_isolation_source: Choana

ncbi_organism_name: Escherichia sp. MOD1-EC6150

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Jatrophihabitans sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Salmonella enterica


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Chromosome

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Bacteroides caecimuris


ncbi_country: USA: Chicago

ncbi_organism_name: Longicatena sp. 210702-DFI.1.194

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.517 MAG

ncbi_isolate: bin.517 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: SAR116 cluster bacterium

ncbi_strain_identifiers: bin.517 MAG

ncbi_submitter: IDAEA-CSIC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Actinomycetota bacterium


ncbi_country: France: Drome

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Anses


ncbi_country: India

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: Spain

ncbi_isolation_source: biofilm

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Instituto de la Grasa-CSIC


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: France: Wimereux

ncbi_isolation_source: marine sponge

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Universite Libre de Bruxelles


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_submitter: University of Washington


ncbi_country: Australia: south east Tasmania

ncbi_isolation_source: gastrointestinal mucosa

ncbi_organism_name: Aliivibrio sp. S3TY1

ncbi_submitter: University Of Tasmania, Tasmania Inst Agriculture


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Ljubljana


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus SJOS6124

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1862


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_submitter: Washington University


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. MB02u-6

ncbi_submitter: University of Alaska Fairbanks


ncbi_country: Norway

ncbi_isolation_source: Snout ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Pseudomonas sp. Z6-20

ncbi_submitter: KAUST


ncbi_organism_name: Neobacillus sp. B4I6

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan

ncbi_isolation_source: hot springs

ncbi_organism_name: Geobacillus thermopakistaniensis

ncbi_refseq_category: reference genome

ncbi_submitter: University of Georgia


ncbi_organism_name: Treponema pedis str. T A4

ncbi_strain_identifiers: T A4

ncbi_submitter: Swedish University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema pedis;x__Treponema pedis str. T A4


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Streptomyces yangpuensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: China: Beijing

ncbi_isolation_source: Skin abscess

ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0774

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Candidatus Phytoplasma fraxini

ncbi_submitter: University of Hohenheim

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrVII (Ash yellows group);s__Candidatus Phytoplasma fraxini


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan University


ncbi_country: USA: Oklahoma

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Oklahoma Health Sciences Center


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: environmental waters

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Finland

ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_country: Portugal: Porto

ncbi_isolation_source: urine

ncbi_organism_name: Gardnerella pickettii

ncbi_submitter: UCIBIO/REQUIMTE, Faculty of Pharmacy, University of Porto


ncbi_submitter: Yonsei University


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA43265

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Japan: Chiba

ncbi_isolation_source: Hairy root tissue; gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Institute for Agricultural and Fisheries and Food Research (ILVO)


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Switzerland

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Candidatus Stammera capleta

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD5934-2

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Portugal: Marco de Canaveses

ncbi_isolation_source: water sample

ncbi_organism_name: Dolichospermum flos-aquae LEGE 04289

ncbi_submitter: CIIMAR


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Granulicella sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Colombia: Valle

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acetobacter sp.


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Amedibacillus dolichus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces sp. NPDC060064

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC014802


ncbi_organism_name: Streptomyces sp. NPDC053069


ncbi_organism_name: Escherichia sp. WS1377

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: China Agricultural University


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: USA: MD

ncbi_isolation_source: cucumber

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnospiraceae bacterium UBA1818

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 103

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: SNUC 209

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Parana

ncbi_isolation_source: Rectal swab

ncbi_submitter: USP


ncbi_country: Philippines

ncbi_isolation_source: Diarrhea

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Laboratory passage

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MRSN 56

ncbi_submitter: The University of Sydney


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Segatella copri

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Bacillus proteolyticus

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: South Africa: Pietermaritzburg

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: Hungary: Kecskemt

ncbi_isolation_source: Anaerobic sludge from Kecskemt Biogas Plant

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Queensland


ncbi_country: Denmark

ncbi_isolation_source: copper fed pig

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Enterococcus faecalis 32


ncbi_organism_name: Yersinia aldovae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Romania: Bucharest

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Clostridium gallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 211

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 4019

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Moscow

ncbi_isolation_source: aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_country: Canada: Guelph

ncbi_isolation_source: dry chia seeds

ncbi_submitter: Devon Radford's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cubana


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Candidatus Pseudothioglobus singularis

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus singularis


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: anaerobic sludge

ncbi_organism_name: Thermodesulfovibrio aggregans

ncbi_submitter: AIST


gtdb_type_species_of_genus: t

ncbi_country: USA

ncbi_isolation_source: vagina

ncbi_submitter: Ghent University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Gardnerella;s__Gardnerella vaginalis;x__Gardnerella vaginalis ATCC 14018 = JCM 11026


ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Parvimonas micra


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: UIUC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: Penn State


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Seleniivibrio sp.

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Klebsiella sp. 100962

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: California

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_assembly_name: Helicobacter bizzozeronii CCUG 35545

ncbi_organism_name: Helicobacter bizzozeronii CCUG 35545

ncbi_submitter: University of Helsinki, Faculty of Veterinary Medicine


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_isolate: AOP34_CS2_surf _bin _10

ncbi_organism_name: Brachybacterium sp.

ncbi_strain_identifiers: AOP34_CS2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Ectopseudomonas mendocina NK-01

ncbi_submitter: Department of Microbiology, College of Life Sciences, Nankai University,Tianjin 300071, China


ncbi_country: South Korea

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Arenimonas;s__Arenimonas oryziterrae;x__Arenimonas oryziterrae DSM 21050 = YC6267


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_submitter: The University of Hong Kong


ncbi_country: Indian Ocean

ncbi_isolation_source: a chimney wall

ncbi_organism_name: Thermodesulfatator autotrophicus

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: EMG


ncbi_country: Saudi Arabia

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Paenibacillus sp. FSL L8-0506

ncbi_submitter: Penn State


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: feces

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_strain_identifiers: Inaba

ncbi_submitter: Biology, Education college for Pure Sciences/Ibn Alhaitham/University of Baghdad

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Pedobacter petrophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptococcus alactolyticus

ncbi_submitter: University of Manitoba


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Jannaschia sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Cyclonatronaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Reyranella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bradyrhizobium sp.


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Czech Academy of Science


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Ramlibacter sp.


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: ProteonPharmaceuticals


ncbi_country: Turkey

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas coleopterorum


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Syntrophales bacterium


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Melioribacter roseus

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: rhizosphere

ncbi_organism_name: Isoptericola sp. AK164

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea: Seoul

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Schaalia georgiae

ncbi_submitter: Kyung Hee University


ncbi_country: China: Nei Monggol

ncbi_isolation_source: desert soil

ncbi_organism_name: Planomicrobium sp. CPCC 101110

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Oscillibacter valericigenes

ncbi_submitter: Veterinary Research Institute


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: France

ncbi_isolation_source: mandibular lymph node

ncbi_submitter: Réseau français de Santé Animale

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_isolation_source: aspirate

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Uttar Pradesh; Bhimnagar

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Jeotgalicoccus huakuii

ncbi_strain_identifiers: NBRI 13E

ncbi_submitter: CSIR-National Botanical Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EBI


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11325

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: stool

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: USA: Atlanta

ncbi_isolation_source: urine

ncbi_organism_name: Aerococcus sp. Group 1

ncbi_submitter: Region Zealand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Aerococcaceae;g__Aerococcus;x__Aerococcus incertae sedis;s__Aerococcus sp. Group 1


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: ATA BIO TEKNOLOJI ILAC SANAYI VE TICARET LTD. STI


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: USA: Minesota

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_submitter: United Kingdom Health Security Agency


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F74220

ncbi_submitter: Broad Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Wisconsin

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Limimorpha sp.

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limimorpha;x__unclassified Candidatus Limimorpha;s__Candidatus Limimorpha sp.


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: cow

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Genomics


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Lactococcus lactis


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Greece

ncbi_submitter: bioMerieux


ncbi_country: Spain: Canary Islands

ncbi_isolation_source: hemolymph

ncbi_organism_name: Photobacterium swingsii

ncbi_strain_identifiers: CAIM 1393

ncbi_submitter: CIAD, A.C.


ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Shallow soil patches nearby Vellozia epidendroides specimens

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Thermus sp.

ncbi_submitter: International Centre for Terrestrial Antarctic Research, University of Waikato, New Zealand


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: United Kingdom

ncbi_isolation_source: Endo-cervical discharge

ncbi_organism_name: Paraclostridium sordellii


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Sphaerochaeta sp. UBA6095

ncbi_submitter: University of Queensland


ncbi_submitter: Department of Microbiology, Faculty of Science, Gombe State University, Tudun Wada, Gombe, Gombe Sta


ncbi_country: China: Dalian

ncbi_isolation_source: activated sludge from a local municipal sewage plant

ncbi_organism_name: Comamonas sp. Z3

ncbi_submitter: Dalian University of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany: Kyffhaeuserland; Seega

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Friedrich-Loeffler-Institute, Federal Research Institute for Animal Health


ncbi_country: USA

ncbi_organism_name: Bacteroides congonensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Candidatus Cloacimonas sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__environmental samples;s__uncultured Candidatus Cloacimonas sp.


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: INRAE


ncbi_strain_identifiers: R

ncbi_submitter: Univ. Connecticut

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;o__Mycoplasmoidales;f__Mycoplasmoidaceae;g__Mycoplasmoides;s__Mycoplasmoides gallisepticum;x__Mycoplasmoides gallisepticum str. R;x__Mycoplasmoides gallisepticum str. R(low)


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 38

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Frischella perrara

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Monash University


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Canibacter zhuwentaonis

ncbi_submitter: China CDC


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Australia: St. George Great Atrtesian Basin; Queensland

ncbi_isolation_source: Myall Plains Bore well RN 106

ncbi_organism_name: Geobacillus sp. BCO2

ncbi_submitter: Microbial Gene Research and Resources Facility


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Salmonella sp. NW510

ncbi_submitter: Sichuan University


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae SK23020

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Italy: Perugia

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Camerino


ncbi_country: USA: Bridger Bay in Great Salt Lake; Utah

ncbi_isolation_source: Microbial Mat

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Poland: Warszawa

ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: National Medicines Institute


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_submitter: Saint-Louis Hospital


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Collinsella sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Zetaproteobacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatius Mariprofundia;x__environmental samples;s__uncultured Zetaproteobacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_country: Uganda: Bombo Military Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: Bifidobacterium pullorum subsp. saeculare

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Upper Klamath Lake; OR

ncbi_isolation_source: lake water

ncbi_organism_name: Aphanizomenon flos-aquae MDT14a

ncbi_submitter: Oregon State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: China: Nanjing

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus favisporus

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of British Columbia


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: christian Medical College


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_submitter: Universidad Andres Bello


ncbi_country: China

ncbi_organism_name: Campylobacter jejuni HB-CJGB-ZX

ncbi_strain_identifiers: HB-CJGB-ZX

ncbi_submitter: State Key Laboratory for Infectious Disease Prevention and Control, and National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China


ncbi_organism_name: Neisseria meningitidis NM35

ncbi_submitter: IGS


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_submitter: Animal and Plant Quarantine Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0231

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Leuconostoc falkenbergense

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Brazil

ncbi_isolation_source: ready to eat dish

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: WTSI


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 101

ncbi_organism_name: Staphylococcus succinus

ncbi_strain_identifiers: SNUC 201


ncbi_organism_name: Motilibacter rhizosphaerae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_organism_name: Nostoc sp. DedVER02

ncbi_submitter: LANGEBIO


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: animal

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chifeng Center for Disease Control and Prevention


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudodesulfovibrio mercurii

ncbi_submitter: US DOE Joint Genome Institute


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Methylophilaceae bacterium


ncbi_country: India: Iewduh; Shillong

ncbi_isolation_source: Retail goat meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_submitter: University of Wyoming


ncbi_country: USA: Colorado

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella quintana

ncbi_submitter: Division of Vector-Borne Diseases, Centers for Disease Control and Prevention


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Universidad de La Rioja


ncbi_country: Poland: North-East

ncbi_isolation_source: bird (unidentified species)

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3176

ncbi_submitter: Broad Institute


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_country: USA: NY

ncbi_isolation_source: chicken breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM N26093


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Malaya


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Fusobacterium polymorphum

ncbi_strain_identifiers: KCOM 1265

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_country: France

ncbi_isolation_source: milk medium

ncbi_organism_name: Hafnia alvei

ncbi_submitter: Biose industrie


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_assembly_name: IMG-taxon 2617270936 annotated assembly

ncbi_organism_name: Tessaracoccus oleiagri

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Faecalitalea sp. UBA3699

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: the Tonga Trench

ncbi_isolation_source: marine sediment

ncbi_organism_name: Colwellia sp. TT2012

ncbi_submitter: University of California San Diego


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Sichuan; Chengdu

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Collinsella aerofaciens


ncbi_organism_name: Amycolatopsis sp. NPDC058278

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Segatella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS CTRL-33

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS CTRL-33

ncbi_submitter: The University Hong Kong


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_country: Saudi Arabia: KAUST

ncbi_isolate: ATM

ncbi_isolation_source: marine ANAMMOX bioreactor

ncbi_organism_name: Armatimonadota bacterium

ncbi_strain_identifiers: ATM

ncbi_submitter: KAUST


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Oxford


ncbi_country: China: Hangzhou

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Zhejiang University


ncbi_country: USA: Durham; NC

ncbi_isolation_source: BAL

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: wastewater metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Xanthomonas albilineans

ncbi_submitter: IB-USP


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium UBA4085


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2593339210 annotated assembly

ncbi_organism_name: Eubacterium ruminantium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Bangladesh

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Curtobacterium pusillum

ncbi_submitter: BGI


ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Donghicola sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Poland: Augustow

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Polaribacter sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: University of Ottawa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: East China University of Science and Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Zhejiang University


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_submitter: Institute of Marine Research


ncbi_country: Malaysia

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Zhouia amylolytica

ncbi_submitter: FACULTY OF SCIENCE, UNIVERSITI TEKNOLOGI MALAYSIA


ncbi_organism_name: uncultured Johnsonella sp.

ncbi_submitter: EMG


ncbi_country: Australia: Five Islands

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_country: South Africa

ncbi_isolation_source: Pretoria

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Pretoria


ncbi_isolation_source: cold seep

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: USA

ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Phocaeicola vulgatus


ncbi_assembly_name: freshwater MAG --- Loc090907-8m_bin-669

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: USA: Bethesda

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Nitriliruptor sp.

ncbi_submitter: University of Calgary


ncbi_country: Japan: Tokyo

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas phenolica O-BC30

ncbi_submitter: Shandong University


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_country: Egypt: Wadi Natrun

ncbi_isolation_source: saline lake

ncbi_organism_name: Halorhodospira sp. 9628

ncbi_submitter: Bellevue University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_country: USA: Georgia

ncbi_isolation_source: freshwater lake mesocosm spiked with cow8 feces day 7

ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bradyrhizobium diazoefficiens

ncbi_strain_identifiers: USDA 316

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Queensland

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: USDA 254


ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Chromohalobacter sp. HP20-39

ncbi_submitter: Pavol Jozef Safarik University in Kosice, Faculty of Science


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: Technical University Munich


ncbi_organism_name: Enterococcus sp. DIV0355

ncbi_submitter: Broad Institute


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Shool of Life Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_organism_name: Propionicimonas paludicola


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics GmbH


ncbi_country: France: near Montpellier

ncbi_isolation_source: anoxic marine sediment

ncbi_organism_name: Desulfonema magnum

ncbi_submitter: Carl von Ossietzky University of Oldenburg


ncbi_organism_name: Salmonella sp. NW931

ncbi_submitter: Sichuan University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Iowa


ncbi_country: Australia: Melbourne

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_assembly_name: wVulM

ncbi_isolate: wVulm

ncbi_organism_name: Wolbachia endosymbiont of Armadillidium vulgare

ncbi_strain_identifiers: wVulm

ncbi_submitter: Universite de Poitiers - CNRS


ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_organism_name: Symbiopectobacterium sp.

ncbi_submitter: Faculty of Science, University of South Bohemia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Symbiopectobacterium sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Eggerthella lenta


ncbi_organism_name: Morganella morganii

ncbi_submitter: Cardiff University School of Medicine


ncbi_organism_name: Phaeobacter italicus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Sphingobacterium sp.


ncbi_organism_name: Metabacillus crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e Basilicata


ncbi_country: China: Kunlun Pass Basin

ncbi_organism_name: Sandarakinorhabdus fusca

ncbi_submitter: Institute of Microbiology


ncbi_country: Japan:Ibaraki; Tsuchiura; Lake Kasumigaura

ncbi_isolation_source: lake surface water

ncbi_organism_name: Polynucleobacter yangtzensis

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin55

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KAP bin55

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CML 11

ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Sutterella wadsworthensis


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Herminiimonas sp. NPDC097707

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Sangeribacter sp.


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_country: USA

ncbi_isolation_source: plant environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas putida S12

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas putida;x__Pseudomonas putida S12


ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: EMG


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UMR 1253, INRA/Agrocampus


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bioplatforms Australia


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_assembly_name: Rumen uncultured genome RUG12741

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces variabilis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: India: Chennai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Sree Balaji Dental College & Hospital


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Hyphomonadaceae bacterium TMED125

ncbi_submitter: University of Southern California


ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B40(2017)

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095


ncbi_isolation_source: not available

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_country: Norway

ncbi_isolation_source: water

ncbi_organism_name: Vibrio sp. 12-2(3-a)

ncbi_submitter: IMR


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_assembly_name: MMC-GTS-gIpF-gIpU

ncbi_isolate: synthetic

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: SIB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_country: USA: MD

ncbi_isolation_source: chicken breast

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_country: Viet Nam: Hanoi

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AMR research center, National Institute of Infectious Diseases


ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TmT2-59

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Pacific Ocean: Juan de Fuca Ridge; Explorer Ridge

ncbi_isolation_source: Black Smoker

ncbi_organism_name: Thalassospira sp. ER-Se-21-Dark

ncbi_submitter: University of Manitoba


ncbi_organism_name: Helicobacter ganmani

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sierra Leone

ncbi_organism_name: Citrobacter sp. SL156

ncbi_submitter: Naval Research Laboratory


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Pyramidobacter sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: Singapore

ncbi_isolation_source: supermarket

ncbi_submitter: SCELSE, Nanyang Technological University, Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: IZSVe

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gatineau


ncbi_organism_name: uncultured Rickettsiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptomyces sp. NPDC051080

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Microthrixaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Paenibacillus campi

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL005PA4

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_country: Canada: British Columbia

ncbi_isolation_source: ANIMAL-chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20120765


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Viet Nam: Southern

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Vicinamibacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Blautia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Sphingomonas sp. PB2P12

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Zhuhai

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinan University


ncbi_organism_name: Segatella copri

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: ID

ncbi_isolation_source: Sow

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59788F

ncbi_submitter: FDA


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Institute of Health


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Amphritea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA44194

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gimesia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Vibrio diabolicus

ncbi_submitter: Tel Aviv University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;x__Vibrio diabolicus subgroup;s__Vibrio diabolicus


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Paremcibacter sp.


ncbi_organism_name: uncultured Methylibium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sulfitobacter sp. 1A16787

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Rhodothermales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Xiamen University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-2697

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Homo Sapiens

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Nottingham


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae GA19998

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Kasetsart University


ncbi_submitter: SC


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Escherichia coli

ncbi_submitter: University College Cork


ncbi_organism_name: Streptomyces olivaceoviridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China

ncbi_isolation_source: Freshwater fish

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: hide

ncbi_submitter: Kansas State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis QH-1

ncbi_submitter: China University of Geosciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis QH-1


ncbi_country: Australia: Sydney; NSW

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of Queensland


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli MP020940.1

ncbi_submitter: IGS


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Aquirufa antheringensis

ncbi_submitter: University of Tehran


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: Canada: Ottawa

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni LMG 9879


ncbi_organism_name: Enterococcus aquimarinus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Massilia sp. Root1485

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: SAHMRI


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan:Kyoto; Kameoka

ncbi_organism_name: Arthrobacter sp. NicSoilB11

ncbi_submitter: Research Institute for Sustainable Humanosphere (RISH), Kyoto University


ncbi_country: France: department 56

ncbi_isolation_source: Feed raw material

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Melissococcus plutonius ATCC 35311

ncbi_submitter: National Center for Global Health and Medicine


ncbi_country: USA: Boston; MA

ncbi_isolation_source: fluid

ncbi_organism_name: Staphylococcus aureus M0703

ncbi_submitter: Broad Institute


ncbi_country: China: Hainan

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter sp. YH12139

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: UNIVERSIDAD AUTONOMA CHAPINGO


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow stomach

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: DS-I Africa


ncbi_country: Burkina Faso

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis 63006

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lysinibacter cavernae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Sichuan

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC