ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: addis ababa university


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Xiamen University

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_assembly_level: Chromosome

ncbi_country: Finland

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea:Buyeo

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Corynebacterium propinquum

ncbi_strain_identifiers: ACRQS

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Saccharothrix carnea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: Mexico: Acaxochitlan; State of Hidalgo

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium acidisoli

ncbi_submitter: Laboratory of Microbial Ecology of the Escuela Nacional de Ciencias Biologicas


ncbi_country: China: nanjing

ncbi_organism_name: Cohnella sp. LGH

ncbi_strain_identifiers: LGH

ncbi_submitter: nanjing agriculture university


ncbi_country: Canada: Ottawa

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: University of Ottawa


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


gtdb_representative: t

ncbi_organism_name: Calothrix sp. NIES-4105

ncbi_submitter: Toyohashi University of Technology


ncbi_country: Pakistan

ncbi_isolation_source: bedside light switch in hospital intensive care unit

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Microgenomates bacterium OLB23

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Microgenomates;s__Microgenomates bacterium OLB23


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium urealyticum

ncbi_submitter: University of Washington


ncbi_country: USA: California

ncbi_isolation_source: blood

ncbi_organism_name: Chimaeribacter californicus

ncbi_refseq_category: reference genome

ncbi_submitter: University of Utah


ncbi_country: Sweden

ncbi_isolation_source: caecum

ncbi_organism_name: Clostridium novyi A str. BKT29909

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium novyi;x__Clostridium novyi A;x__Clostridium novyi A str. BKT29909


ncbi_country: USA: Oregon

ncbi_isolation_source: Draining-Matting Conveyor

ncbi_organism_name: Streptococcus macedonicus

ncbi_submitter: Oregon State University


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Spain

ncbi_isolation_source: lung

ncbi_organism_name: Uruburuella suis

ncbi_submitter: INRS-Centre Armand-Frappier Sante Biotechnologie


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_country: Peru: Loreto

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Naval Medical Research Center, Biological Defense Research Directorate


ncbi_organism_name: Paraburkholderia sp. J94

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: sputum

ncbi_submitter: Muenster University Hospital


ncbi_country: China: Xuwei port; Lianyungang City; Jiangsu Province

ncbi_isolation_source: surface sediments in shallow sea

ncbi_organism_name: Roseobacter sinensis

ncbi_submitter: Hohai University


ncbi_organism_name: Reyranella sp.


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Escherichia coli MC19

ncbi_submitter: The Genome Institute


ncbi_isolation_source: insecticide factory

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: Hunan Academy of Agricultural Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Micromonospora zamorensis

ncbi_submitter: Technical University of Denmark


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 3-373-03_S4_C3

ncbi_submitter: IGS


gtdb_type_species_of_genus: t

ncbi_organism_name: Oceanicaulis alexandrii DSM 11625

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Inner Mongolia Autonomous Region;Chifeng City

ncbi_isolation_source: soil sample

ncbi_organism_name: Actinoplanes sandaracinus

ncbi_submitter: Northeast Agricultural University


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: China

ncbi_isolation_source: manure wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Schaalia hyovaginalis

ncbi_submitter: AAFC


ncbi_isolation_source: murine gut

ncbi_organism_name: Turicibacter sp. UBA1159

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: grass shoots

ncbi_submitter: Wageningen University & Research


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV255

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Candidatus Saccharimonas sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__Candidatus Saccharimonadaceae;g__Candidatus Saccharimonas;x__unclassified Candidatus Saccharimonas;s__Candidatus Saccharimonas sp.


ncbi_country: USA: CT

ncbi_organism_name: Shigella flexneri

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Sweden

ncbi_isolation_source: wound

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Karolinska Institutet


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: University of Bristol


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: skin

ncbi_organism_name: Mycolicibacterium farcinogenes

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: iFUNFoods


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Slovenia

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: zhejiang university


ncbi_organism_name: Bacillus cytotoxicus

ncbi_strain_identifiers: CVUAS 6661

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Thessaly


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: UNIVERSITY OF KWAZULU-NATAL


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Zunongwangia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: SRCAMB


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: University of Washington


ncbi_organism_name: Rhodoplanes sp. Z2-YC6860

ncbi_submitter: Seoul National University


ncbi_country: Sweden: Jonstorp

ncbi_organism_name: Apilactobacillus apinorum

ncbi_submitter: Uppsala university


ncbi_country: Germany: Bremen; pond; freshwater sediment

ncbi_isolation_source: autotrophic NRFeOx enrichment culture BP inoculated with freshwater sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: University of Tuebingen


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0228

ncbi_submitter: Broad Institute


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Czech Republic

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Padua


ncbi_country: Iraq

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Maribacter sp.

ncbi_submitter: Kiel University


ncbi_country: Argentina

ncbi_isolation_source: urine

ncbi_submitter: Servicio Antimicrobianos, INEI-ANLIS "Dr. Carlos G. Malbran"


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: Potato puree; food poisoning

ncbi_organism_name: Bacillus cytotoxicus

ncbi_strain_identifiers: CVUAS 2833

ncbi_submitter: TU Muenchen


ncbi_country: France

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Streptomyces sp. NPDC047453

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: Algeria

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: IRD


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. blepharidis

ncbi_strain_identifiers: NCPPB 1757

ncbi_submitter: University of Exeter


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: river water


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: Mill Valley; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Tanzania: Dar es Salaam

ncbi_isolation_source: patient in hospital

ncbi_submitter: University of Bergen


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli O111:NM str. 01-3076

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 01-3076


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Pseudomonas sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Australia: Brisbane

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Russia: Yakutia

ncbi_isolation_source: deep soil layers

ncbi_organism_name: Bacillus cereus

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_country: Australia: Melbourne

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Biomedicine Discovery Institute


ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Denmark: Capital Region of Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Slagelse Hospital


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Corynebacterium sp. HMSC073H12

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Amedibacillus dolichus DSM 3991

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: USA: Baltimore Inner Harbor; Chesapeake Bay

ncbi_organism_name: Synechococcus sp. CB0101

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Zhejiang Ocean University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with normal maize

ncbi_organism_name: Cryptobacterium sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Wild bird feces

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Bradyrhizobium sp. BEA-2-5

ncbi_submitter: I2BC CNRS


ncbi_country: China

ncbi_isolation_source: seawater surrounding coral Acropora digitifera under normal condition

ncbi_organism_name: Aquisalinus sp.

ncbi_submitter: Shenzhen Institute of Guangdong Ocean University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Czech Republic: Zehrov

ncbi_isolation_source: forest soil

ncbi_organism_name: Acinetobacter dispersus

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Sri Lanka: Colombo

ncbi_isolation_source: Raw chicken meat

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Taiwan: Kueishan Island

ncbi_isolation_source: seawater from shallow-sea hydrothermal system

ncbi_organism_name: Donghicola sp. JL3646

ncbi_submitter: Xiamen University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: China Agricultural University


ncbi_country: USA: TX

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Eggerthella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Vespertiliibacter pulmonis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: gut

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Nocardia otitidiscaviarum NBRC 14405

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter schindleri CIP 107287

ncbi_submitter: Broad Institute


ncbi_country: Kuwait

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_country: Costa Rica: San Jose

ncbi_isolation_source: wastewater

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Candidatus Fonsibacter sp.

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;x__unclassified Candidatus Fonsibacter;s__Candidatus Fonsibacter sp.


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_country: Japan: Nagano

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Montreal


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Pseudomonas sp. Env-17

ncbi_submitter: University of Copenhagen


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Streptomyces sp. BH097

ncbi_submitter: University of California Davis


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Biology Centre CAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Lebanon

ncbi_isolation_source: spring water

ncbi_organism_name: Pseudomonas cedrina subsp. cedrina

ncbi_submitter: Technische Universitaet Muenchen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas cedrina;sb__Pseudomonas cedrina subsp. cedrina


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Gemmiger qucibialis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Ruminococcus flavefaciens AE3010

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Hubei

ncbi_isolation_source: kernel

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Hubei University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Pseudohongiella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- Ki2-D2_bin-0493

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Microbacterium ginsengisoli

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater influent sample

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands: Texel

ncbi_isolation_source: hemolymph

ncbi_organism_name: Vibrio kanaloae

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3680

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: uncultured Candidatus Avispirillum sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avispirillum;x__environmental samples;s__uncultured Candidatus Avispirillum sp.


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_country: South Korea: Chungnam; Chonan-si

ncbi_isolation_source: fermented vegetable

ncbi_organism_name: Lactiplantibacillus paraplantarum

ncbi_submitter: Pukyong National University


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kangiella sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_assembly_name: MONUR

ncbi_isolate: MONUR

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MONUR

ncbi_submitter: UNIMI


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Desulfovibrio intestinavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_country: China: Hong Kong SAR

ncbi_isolation_source: partial-nitration anammox reactor sludge sample

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI


ncbi_organism_name: Metamycoplasmataceae bacterium

ncbi_submitter: Sichuan University


ncbi_assembly_name: Rumen uncultured genome RUG10684

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_assembly_name: freshwater MAG --- MJ120620B_bin-578

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_organism_name: uncultured Dongia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: Azerbaijan: Nagorno-Karabakh Autonomous Region

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_country: Italy

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Australia: Perth

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_country: USA: Texas

ncbi_isolation_source: wound

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Sulfurihydrogenibium azorense Az-Fu1

ncbi_submitter: TIGR


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Portugal: Odemira

ncbi_isolation_source: abscess

ncbi_organism_name: Corynebacterium silvaticum

ncbi_submitter: UFMG


ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Burkina Faso

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: human skin

ncbi_organism_name: Deinococcus wulumuqiensis

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Myroides odoratus


ncbi_organism_name: Chryseobacterium sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Japan: Toyama

ncbi_isolation_source: mesenteric lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Aichi Prefectural Chuo Livestock Hygiene Service Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Moraxella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Distal colon

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Logan; Utah

ncbi_isolation_source: Pollen provision

ncbi_organism_name: Apilactobacillus micheneri

ncbi_submitter: University of California, Riverside


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: University of Parma


ncbi_organism_name: Mesorhizobium sp. M0106

ncbi_submitter: Washington State University


ncbi_organism_name: Porphyromonas sp.


ncbi_country: Thailand

ncbi_isolation_source: fermented cane molasses at alcohol plants

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Secundilactobacillus;s__Secundilactobacillus similis;x__Secundilactobacillus similis DSM 23365 = JCM 2765


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water summer D sample 29 PSU in less than .8 micron size fraction

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Enterococcus avium


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_organism_name: Stenotrophomonas geniculata


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: IMG-taxon 2503538017 annotated assembly

ncbi_organism_name: Thermanaeromonas toyohensis ToBE

ncbi_strain_identifiers: ToBE

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: University hospital Lubeck


ncbi_country: Brazil: Sao Bento do Una

ncbi_isolation_source: fecal sample

ncbi_organism_name: Aeromonas enteropelogenes

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_isolation_source: oral cavity- mouth

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces;x__unclassified Actinomyces;s__Actinomyces sp. oral taxon 172;x__Actinomyces sp. oral taxon 172 str. F0311


ncbi_country: China: Sichuan

ncbi_submitter: China CDC


ncbi_country: China

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_isolation_source: Sewage

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Wenzhou Medical University


ncbi_organism_name: Stenotrophomonas sp.


ncbi_isolation_source: pork

ncbi_submitter: Yangzhou University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Pantoea sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alcaligenes parafaecalis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: DC DFS PHL NCBI Submission Group


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_assembly_name: freshwater MAG --- ErkenSummer_bin-2939

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mycobacterium sp. HOS39

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Bacteroidales bacterium UBA2198

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2198


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Calgary


ncbi_country: USA: New York; Palisades

ncbi_isolation_source: isolated from freshwater that stored Solumitrus palustris cysts; freshwater from Lamont-Doherty Earth Observatory

ncbi_organism_name: Caulobacter sp. X

ncbi_strain_identifiers: X

ncbi_submitter: The University of Chicago


ncbi_organism_name: Enterobacter wuhouensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Enterococcus sp. AZ037

ncbi_submitter: Broad Institute


ncbi_country: Germany: west of Rottenburg an der Laaber

ncbi_isolation_source: sediment|groundwater

ncbi_organism_name: Ferribacterium limneticum

ncbi_submitter: Helmholtz Zentrum Muenchen


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Chile

ncbi_isolation_source: Fish farm freshwater

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Beijing


ncbi_country: Poland: Bialystok

ncbi_isolation_source: feaces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Medical University of Bialystok


ncbi_country: Germany

ncbi_organism_name: Borreliella garinii

ncbi_strain_identifiers: TLSII

ncbi_submitter: INRAe


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Colorado State University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Henriciella sp.

ncbi_submitter: University of Southern California


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Switzerland: Basel

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: ETH Zurich


ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: Austria

ncbi_isolation_source: lung

ncbi_organism_name: Chlamydia pecorum

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: China

ncbi_isolation_source: seafish (Tenualosa reevesii) from sea close to Xiamen

ncbi_organism_name: Bacillus xiamenensis

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_organism_name: Parageobacillus toebii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: College of Life Sciences


ncbi_assembly_name: Rumen uncultured genome RUG14305

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- YR2_bin-1373

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Mergibacter septicus

ncbi_submitter: USAMRIID


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M2


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd.


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Haloechinothrix halophila YIM 93223

ncbi_submitter: JGI


ncbi_organism_name: Xanthomonas sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Russia

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Kuban State Agrarian University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Guangdong Provincial People's Hospital


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0231

ncbi_submitter: Broad Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: United Kingdom: Suffolk

ncbi_isolation_source: not available: to be reported later

ncbi_submitter: SC


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Streptomyces thermodiastaticus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Israel

ncbi_isolation_source: root surface

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Agricultural Research Organization - the Volcani Center


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Italy: Castiglion Fiorentino; AR

ncbi_isolation_source: water

ncbi_organism_name: Rhodopseudomonas palustris

ncbi_submitter: University of Florence


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_organism_name: Amphibacillus indicireducens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Franconibacter pulveris DSM 19144


ncbi_country: USA: Tulsa

ncbi_isolation_source: chicken Gizzard

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Tulsa


ncbi_organism_name: Escherichia coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Florida

ncbi_organism_name: Leucobacter sp. Psy1

ncbi_submitter: Clemson University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Komeilibacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Komeiliibacteriota;x__unclassified Candidatus Komeilibacteria;s__Candidatus Komeilibacteria bacterium


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Akkermansiaceae bacterium UBA7421


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces pseudogriseolus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Aldehydirespirator sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Caldilineaceae bacterium


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: UFU J29

ncbi_submitter: The Xanthomonas Threats project


ncbi_submitter: Zhejiang University


ncbi_organism_name: Microbacterium sp. I2

ncbi_submitter: Suzhou University of Science and Technology


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: concordia university


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: North South University


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: termite gut

ncbi_organism_name: Betaproteobacteria bacterium UBA931

ncbi_submitter: University of Queensland


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_assembly_name: Rumen uncultured genome RUG10927

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: rice leaf

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: South China Agricultural University


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_country: Germany

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis DE9938

ncbi_submitter: University of Würzburg


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical University of Denmark


ncbi_country: China:Xiaolian City; Chongzuo Longzhou; Guangxi provience

ncbi_organism_name: Agromyces laixinhei

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Ruegeria sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Iowa


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces asoensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Switzerland

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Escherichia ruysiae

ncbi_submitter: IEGEBA (UBA/CONICET)


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Vogelbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Vogeliibacteriota;x__unclassified Candidatus Vogelbacteria;s__Candidatus Vogelbacteria bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_country: China: Chongqing

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Chongqing Medical University


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: United Kingdom

ncbi_organism_name: Prevotella micans DSM 21469 = JCM 16134

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella micans;x__Prevotella micans DSM 21469 = JCM 16134


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_assembly_name: gabuh0807 v01

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii UH0807

ncbi_submitter: J. Craig Venter Institute


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-0046

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Guangzhou

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: ground pork

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Colombia

ncbi_isolation_source: Surgical wound

ncbi_organism_name: Staphylococcus aureus DAR5796

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Austwickia sp.

ncbi_submitter: Aalborg University


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Levilactobacillus andaensis

ncbi_submitter: Northeast Agricultural University


ncbi_country: Serbia: Rimski Sancevi

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Rickettsia endosymbiont of Cantharis rufa

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Terminalia paniculata leaf

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: DE

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Opitutaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Allosphingosinicella ginsenosidimutans

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Rhodococcus ruber

ncbi_strain_identifiers: IEGM 1391

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: Barn Environment

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: University of Saskatchewan


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: moderately saline water

ncbi_organism_name: Marinobacter halophilus

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: USA: Philadelphia

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Olaf

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: Rectal swab

ncbi_submitter: Bournemouth University


ncbi_organism_name: Roseburia faecis


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: EMG


ncbi_organism_name: Eubacterium sp. 14-2

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. 14-2


ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_isolation_source: metagenome

ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: University of Trento


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptacidiphilus monticola

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Bacillus sp. YIM B13449

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13449


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Universite catholique de Louvain


ncbi_organism_name: Clostridium fessum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Finland: Northern Finland; Hietatievat / Kalmakaltio

ncbi_isolate: HIE bin20

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: HIE bin20

ncbi_submitter: Monash University


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: Terriglobus aquaticus

ncbi_submitter: Gyeongsang national university


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Pectobacterium parvum

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Segatella copri

ncbi_submitter: Helmholtz Centre for Infection Research - HZI


ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Novosphingobium beihaiensis

ncbi_submitter: Guangxi Academy of Science


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NORHED grant


ncbi_organism_name: uncultured Corallococcus sp.

ncbi_submitter: EMG


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea

ncbi_organism_name: Bacillus sp. N1-1

ncbi_submitter: First Institute of Oceanography, Ministry of Natural Resources, MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. N1-1


ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Halanaerobium congolense

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Agathobacter sp.


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: human feces metagenome


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: China: Guangzhou

ncbi_isolation_source: intestinal

ncbi_organism_name: Escherichia coli

ncbi_submitter: SouthChina Agriculture University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: Doubanjiang

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Institute of Agro-products processing Science and Technology of SAAS


ncbi_country: South Korea: Shinnan; Bigeum

ncbi_isolation_source: soil from farming field

ncbi_organism_name: Sphingomonas segetis

ncbi_submitter: Institute of Microbial Ecology and Resources


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG10162

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Pseudomonas sp. MYb398

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Cyanobium sp. NIES-981

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Rikenella sp.


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M158S2

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Sichuan University


ncbi_country: Italy

ncbi_isolation_source: Skin Swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Spain: Madrid

ncbi_isolation_source: Bronchial aspirate

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: North Carolina

ncbi_isolation_source: NCSU Equine Educational Unit

ncbi_organism_name: Ligilactobacillus saerimneri

ncbi_submitter: North Carolina State University


ncbi_organism_name: Asaia bogorensis


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Segatella copri


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Frederick; Maryland

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Senegalimassilia anaerobia


ncbi_country: China: Shenzhen

ncbi_organism_name: Escherichia coli

ncbi_submitter: BGI


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Santa Cruz; CA

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured bacterium


ncbi_country: USA:New York Ontario

ncbi_isolation_source: leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Paenarthrobacter ilicis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: tahitimassiliensis MT11

ncbi_submitter: URMITE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Cytophage Technologies Inc


ncbi_organism_name: Bacillus sp. N3378-2at

ncbi_submitter: microbial pathogenic ecology group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. N3378-2at


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_country: Switzerland

ncbi_submitter: University of Zurich


ncbi_organism_name: Yersinia pestis PY-98

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Zavarzinia sp.

ncbi_submitter: Xiamen University


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Aestuariivirga sp.

ncbi_submitter: EPFL


ncbi_organism_name: Bifidobacterium adolescentis


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Su Dong


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human stool

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium RIFOXYA2_FULL_36_32


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Streptomyces sp. NPDC093675

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: wound

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Erwinia amylovora LA635

ncbi_submitter: CeBiTec


ncbi_organism_name: Plantimonas leprariae

ncbi_submitter: Yunnan Institute of Microbiology


ncbi_country: China: Heilongjiang

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: South China Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Washington


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: gut of larva

ncbi_organism_name: Protaetiibacter intestinalis

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Endomicrobium sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Australia: Victoria

ncbi_isolation_source: blood

ncbi_submitter: University of Rennes 1


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_organism_name: Planctomycetales bacterium


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Oxford


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Chlamydia psittaci DD34

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia psittaci;x__Chlamydia psittaci DD34


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Natronospirales bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: clinical sample

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Balearic Islands


ncbi_country: France

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Taiwan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Shanghai Jiaotong University school of medicin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Massachusetts; Boston

ncbi_isolation_source: gut flora of female BALB/c mice (Charles River Laboratories)

ncbi_submitter: Harvard University


ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Stanford University


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NBC_00503

ncbi_submitter: Technical University of Denmark


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 316

ncbi_submitter: SC


ncbi_country: China: Northeast

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis F14-1

ncbi_submitter: Huazhong Agricultural University, State Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis F14-1


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia coli O26:H11 str. CVM10021

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. CVM10021


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_country: Japan: Yamagata prefecture

ncbi_isolation_source: mushroom

ncbi_organism_name: Mycetocola saprophilus

ncbi_submitter: University of Illinois


ncbi_isolation_source: bacterial endocarditis

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_country: USA: Houston

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Coprobacter secundus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: NY

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Germany: Freising

ncbi_isolation_source: MAP minced beef

ncbi_organism_name: Pseudolactococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Bacillus subtilis TO-A

ncbi_strain_identifiers: TO-A

ncbi_submitter: SRM University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;x__Bacillus subtilis TO-A


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Slackia piriformis

ncbi_submitter: Center for Bioinformatics


ncbi_country: Kazakhstan

ncbi_isolation_source: root nodules

ncbi_organism_name: Sinorhizobium meliloti AK11

ncbi_submitter: University of Florence


ncbi_country: Singapore

ncbi_organism_name: Klebsiella aerogenes


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Urine

ncbi_submitter: SC


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University Hospital Muenster


ncbi_country: Germany

ncbi_isolation_source: Tracheal secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SurvCARE


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: United Kingdom

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Research Center of Avian Diseases, RCAD


ncbi_organism_name: Salmonella sp. 741265109_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Pacific Ocean: South China sea: Haima seep

ncbi_isolation_source: cold seep sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_organism_name: Bacillus anthracis str. Sterne

ncbi_strain_identifiers: Sterne

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. Sterne