ncbi_country: Greece: Sarnos

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_assembly_level: Complete Genome

ncbi_country: China: Inner Mongolia

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus swezeyi

ncbi_refseq_category: reference genome

ncbi_submitter: Inner Mongolia Medical University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


gtdb_representative: t

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PHO


ncbi_country: India: New Delhi

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: All India Institute of Medical Sciences


ncbi_assembly_name: Rumen uncultured genome RUG13559

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: GA

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0871

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Water

ncbi_organism_name: Escherichia coli

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: USA

ncbi_organism_name: Clostridium hydrogeniformans DSM 21757

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC2_40_10


ncbi_country: China: Zhejiang Province

ncbi_isolation_source: sediment

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Heilongjiang

ncbi_isolation_source: lung

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: Norway: Viken

ncbi_isolation_source: feces

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Teichococcus globiformis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: AOP35_03E_surf _bin _35

ncbi_organism_name: Halomonas sp.

ncbi_strain_identifiers: AOP35_03E_surf _bin _35

ncbi_submitter: Genoscope


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Rumen uncultured genome RUG351

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Henan Agricultural University


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shantou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Patescibacteria group bacterium UBA6533

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA6533


ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: gut

ncbi_submitter: New England Biolabs

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: EMG


ncbi_assembly_level: Chromosome

ncbi_country: Turkey

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Taiwan

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang-Ming University


ncbi_country: USA: IN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Borreliella garinii

ncbi_submitter: LMU Munich


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: BGI-Shenzhen


ncbi_assembly_name: freshwater MAG --- A14_bin-3063

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Belgium

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_organism_name: Bacteroides sp. AF14-46

ncbi_submitter: BGI


ncbi_strain_identifiers: 99610;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Georgia; Atlanta

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Uruguay: Tacuarembo

ncbi_isolation_source: lymph nodes

ncbi_submitter: Institut Pasteur de Montevideo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: China: Hangzhou

ncbi_isolation_source: patient

ncbi_organism_name: Acinetobacter pittii

ncbi_strain_identifiers: TCM

ncbi_submitter: Shaoxing Hospital of Traditional Chinese Medicine Affiliated to Zhejiang Chinese Medical University


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Seoul National University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Nigeria: Lagos

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan

ncbi_isolation_source: sewage

ncbi_organism_name: Pseudomonas defluvii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Finland: Olkiluoto

ncbi_isolate: bin N1.63

ncbi_isolation_source: groundwater

ncbi_organism_name: Cellulomonas sp.

ncbi_strain_identifiers: bin N1.63

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Corynebacterium stationis


ncbi_country: China

ncbi_isolation_source: intestine

ncbi_organism_name: Acinetobacter towneri

ncbi_submitter: City University of Hong Kong


ncbi_country: Thailand: Gulf of Thailand

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_isolation_source: Caseous material

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O121:H19;x__Escherichia coli O121:H19 str. 2011C-3108


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Streptococcus sp.


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shantou University Medical College


gtdb_type_species_of_genus: t

ncbi_country: Pacific Ocean: off Japan

ncbi_isolation_source: deep-sea hydrothermal vent chimney sample; 1;385 m depth

ncbi_organism_name: Marinithermus hydrothermalis DSM 14884

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Jouy en Josas; Domain de Vilvert

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Micalis Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: Greece: Evoia

ncbi_isolation_source: Sea bream

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Centre for Research and Technology Hellas


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_isolation_source: human gut

ncbi_organism_name: Xanthomonas massiliensis

ncbi_submitter: EMG


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pakistan

ncbi_isolation_source: Potato field

ncbi_organism_name: Pectobacterium punjabense

ncbi_submitter: Institute for integrative biology of the cell


ncbi_country: South Africa

ncbi_isolation_source: Irrigation water

ncbi_strain_identifiers: UPMP 2037

ncbi_submitter: University of Pretoria


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Washington D.C.

ncbi_isolation_source: Fermented milk (Laban)

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: HUL 10

ncbi_submitter: Howard University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Limosilactobacillus allomucosae

ncbi_strain_identifiers: WILCCON 0052

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptomyces bingchenggensis BCW-1

ncbi_submitter: Northeast Agricultural University


ncbi_country: Australia: Newcastle

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Italy: Florence

ncbi_isolation_source: various material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_country: Thailand

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_isolation_source: lung

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: uncultured Pelistega sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Robbsia andropogonis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bartonella henselae

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: USA: CO

ncbi_isolation_source: chicken feces (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_submitter: EMG


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Rothia sp.


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_isolation_source: metagenome

ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Propionibacterium acidifaciens


ncbi_country: Canada: Rouyn-Noranda

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sulfitobacter aestuarii

ncbi_strain_identifiers: TISTR 2562

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Paenibacillus sp. 2TAB23

ncbi_submitter: CCRP


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Waltera sp.


ncbi_organism_name: Brevibacterium sp. FAM 27836

ncbi_submitter: Agroscope


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Bacteroides cellulosilyticus


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jinshan District Center for Disease Control and Prevention


ncbi_organism_name: Acidovorax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Corynebacterium sp. LaCa222

ncbi_submitter: Bielefeld University


ncbi_isolate: AOP41_A1_coeur _bin _7

ncbi_organism_name: Pediococcus acidilactici

ncbi_strain_identifiers: AOP41_A1_coeur _bin _7

ncbi_submitter: Genoscope


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Zhejiang

ncbi_isolation_source: intestinal content

ncbi_organism_name: Listeria ivanovii

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolate: AOP38_E1_surf _bin _3

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP38_E1_surf _bin _3


ncbi_assembly_name: freshwater MAG --- Loc090402-1m_bin-0156

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_country: China

ncbi_isolation_source: Marine

ncbi_organism_name: Cyanobacterium aponinum FACHB-4101

ncbi_submitter: South China Normal University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Hydrogenovibrio sp. UBA1537

ncbi_submitter: University of Queensland


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Schumannella sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Poland

ncbi_isolation_source: feces from wild bird

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Corynebacterium sp. HMSC22B11

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ares Genetics


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_organism_name: Rhodanobacteraceae bacterium UBA7676


ncbi_assembly_name: IMG-taxon 2588254259 annotated assembly

ncbi_organism_name: Anaerorhabdus furcosa

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: oral swab

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: CA

ncbi_organism_name: Escherichia coli O145

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Urumqi;Xinjiang

ncbi_isolation_source: Raw chicken from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: International Space Station

ncbi_isolation_source: Nomex 6

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_submitter: Swiss Tropical and Public Health Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: blood culture

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Croatian Veterinary Institute, Zagreb


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Medical University of Gdansk


ncbi_country: India

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_isolation_source: tertiary hospital; gynecology

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: Lebanon

ncbi_isolation_source: river water

ncbi_submitter: University of Georgia


ncbi_country: South Korea: Anseoung

ncbi_isolation_source: paddy soil

ncbi_organism_name: Paraburkholderia azotifigens

ncbi_submitter: Hankyong National University


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: College of Basic Medical Science


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran:Beach of New Hengam

ncbi_isolation_source: Sand

ncbi_organism_name: Amycolatopsis sp. DSM 110486

ncbi_submitter: Leibniz Institute DSMZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Phascolarctobacterium sp.


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_submitter: Georg-August-University Goettingen


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Burkholderia cenocepacia PC184

ncbi_submitter: Broad Institute


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_country: United Kingdom:London

ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0591


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella sp. S002_49124

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: College of Life Science


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Sweden

ncbi_organism_name: Schaalia suimastitidis DSM 15538

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Gottingen

ncbi_organism_name: Corynebacterium gottingense

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Oxford


ncbi_country: USA

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: University of Michigan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mycoplasma mycoides subsp. mycoides

ncbi_submitter: Chinese National Human Genome Center at Shanghai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. mycoides


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: University of Queensland


ncbi_organism_name: Roseburia inulinivorans

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: caecum

ncbi_organism_name: Massilimicrobiota sp. An142

ncbi_submitter: Veterinary Research Institute


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Bacillus safensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Australia

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: University of Southampton


ncbi_organism_name: Leucobacter sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Graduate School of Biostudies, Kyoto University


ncbi_country: Puerto Rico

ncbi_isolation_source: marine shell fragment

ncbi_organism_name: Mastigocoleus testarum BC008

ncbi_submitter: Arizona State University


ncbi_country: China: Guangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinan University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Pelagibacter sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp.


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.552 MAG

ncbi_isolate: bin.552 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_strain_identifiers: bin.552 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_isolate: AOP21_I1_surf _bin _5

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP21_I1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_country: Brazil: Rio de Janeiro

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Oswaldo Cruz Institute


ncbi_country: Russia: Moscow

ncbi_isolation_source: Cabbage with the soft rot symptoms

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Phytoengineering R&D Centre, LLC


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Brevifollis gellanilyticus

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: derived from VB111

ncbi_submitter: Universite de Sherbrooke

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Sphingomonas trueperi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Brazil: Porto Alegre

ncbi_isolate: CLERM

ncbi_isolation_source: five ovaries

ncbi_organism_name: Coxiella-like endosymbiont

ncbi_strain_identifiers: CLERM

ncbi_submitter: INTA


ncbi_organism_name: Myxococcales bacterium


ncbi_country: Thailand

ncbi_organism_name: Rhizobium lemnae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: Qatar University


ncbi_organism_name: Sphingobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Laceyella putida

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ruian People's Hospital


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: uncultured Thalassospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bartonella quintana str. Toulouse

ncbi_strain_identifiers: Toulouse

ncbi_submitter: Uppsala Univ.


ncbi_country: USA:Highgate Springs; VT

ncbi_isolation_source: freshwater

ncbi_organism_name: Spartobacteria bacterium UBA5019

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__unclassified Spartobacteria;s__Spartobacteria bacterium UBA5019


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Nocardia sp. NPDC050413

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Netherlands

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Kribbella solani

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: AATYQ

ncbi_submitter: NHGRI


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: India: Madurai

ncbi_isolation_source: Cornea

ncbi_organism_name: Pseudomonas aeruginosa BK1

ncbi_submitter: Aravind Medical Research Foundation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas aeruginosa group;s__Pseudomonas aeruginosa;x__Pseudomonas aeruginosa PAO1;x__Pseudomonas aeruginosa BK1


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pseudocatenulatum;x__Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Belgium

ncbi_isolation_source: mastitis

ncbi_organism_name: Escherichia coli

ncbi_submitter: KOlimastIR


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: EMG


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B193;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Parasphingopyxis sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: Rumen uncultured genome RUG13597

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Harvard Forest; Massachusetts

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Finegoldia magna

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Copenhagen

ncbi_isolation_source: urine

ncbi_submitter: Roskilde University


ncbi_country: USA: Crystal Bog; Wisconsin; USA

ncbi_isolation_source: Lentic environment

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Prevotella micans

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: The University of Hong Kong


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: cold seep

ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacillus sp. FSL K6-3459

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-3459


ncbi_organism_name: Pseudonocardia sp.

ncbi_submitter: University of California-Riverside


ncbi_isolation_source: human gut

ncbi_organism_name: Coriobacteriaceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: milk

ncbi_organism_name: Yersinia intermedia

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- MJ130820B_bin-0601

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Sterolibacterium sp.

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: throat

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Micavibrio sp. TMED2

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Institut Pasteur


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_country: USA: Texas; Salado

ncbi_isolation_source: abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Canada

ncbi_isolation_source: microbial mat ULC066

ncbi_organism_name: Pseudanabaena frigida

ncbi_submitter: ULg


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: blood

ncbi_submitter: OHSU


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Bombella apis

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_isolation_source: Human periodontal pocket

ncbi_organism_name: Tannerella forsythia

ncbi_submitter: Universitaet fuer Bodenkultur Wien


ncbi_country: USA: Evanston; Illinois

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Spain: Santander

ncbi_isolation_source: Picon Bejes-Tresviso cheese

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Institute of Biomedicine and Biotechnology of Cantabria (IBBTEC), Intergenomics group


ncbi_organism_name: Xanthomonas sontii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Streptococcus cuniculi

ncbi_submitter: King's College London


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_submitter: University of Bern


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Queensland


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: faecal

ncbi_organism_name: Citrobacter braakii


ncbi_organism_name: Rhizobium rhizoryzae


ncbi_organism_name: Bifidobacterium catenulatum subsp. kashiwanohense

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Erwinia amylovora

ncbi_submitter: University of Minho


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Winogradskyella rapida

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Chicago


ncbi_country: USA: Bridger Bay in Great Salt Lake; Utah

ncbi_isolation_source: Microbial Mat

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 6.8:eh:-


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: Denmark

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Fannyhessea vaginae PB189-T1-4

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Canada: Toronto

ncbi_isolation_source: chicken

ncbi_submitter: Public Health Ontario


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Korea

ncbi_isolation_source: ocean

ncbi_organism_name: Vibrio sp. dhg

ncbi_strain_identifiers: dhg

ncbi_submitter: POSTECH


ncbi_country: Bangladesh

ncbi_organism_name: Escherichia coli BCE002_MS12

ncbi_submitter: IGS


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: anal swab

ncbi_submitter: Northwest A&F University


ncbi_country: Germany

ncbi_isolation_source: bacterial culture

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: sturter culture Hela Germet

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: university of ljubljana, biotechnical faculty


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Brazil

ncbi_organism_name: Escherichia coli DEC6E

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseburia sp. AF12-17LB

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: eastern marignal seas

ncbi_isolation_source: sea water

ncbi_organism_name: Vibrio aquaticus

ncbi_submitter: Ocean University of China


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: female child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: China

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Birmingham; AL

ncbi_isolation_source: Ceca

ncbi_organism_name: Oscillibacter sp. 1-3

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: France

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Madagascar: Sud-Ouest Pointe Barrow

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Dulcina madagascariensis)


ncbi_country: China: Wuhu; Anhui Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Neobacillus cucumis

ncbi_submitter: Technical University of Denmark


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0045


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: Malaysia: Malacca

ncbi_isolation_source: Plant

ncbi_organism_name: Chromobacterium violaceum

ncbi_submitter: University of Malaya


ncbi_organism_name: Chthonomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Panama: Panama City

ncbi_organism_name: Candidatus Stammera capleta

ncbi_submitter: Emory University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sphingobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_organism_name: Paraburkholderia phytofirmans

ncbi_submitter: The James Hutton Institute


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Escherichia albertii

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Bern


ncbi_country: United Kingdom: England

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Public Health England


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: Czech Republic

ncbi_isolation_source: reservoir for drinking water supply

ncbi_organism_name: Limnohabitans sp. Rim11

ncbi_submitter: Biology Centre of CAS


ncbi_country: Canada: Vancouver; British Columbia

ncbi_isolation_source: rectal tissue

ncbi_organism_name: Paraeggerthella hongkongensis

ncbi_strain_identifiers: RC2;2 A

ncbi_submitter: UCSF


ncbi_organism_name: Pseudomonas paraversuta

ncbi_submitter: CEBITEC


ncbi_organism_name: Bacillus velezensis CAU B946

ncbi_strain_identifiers: CAU B946

ncbi_submitter: Center for Biotechnology, Bielefeld University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis;x__Bacillus velezensis CAU B946


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Rhodospirillales bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: feces

ncbi_organism_name: Thomasclavelia cocleata


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD0_bin-2033

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Sri Lanka: Kurunegala

ncbi_isolation_source: Exorhizosphere rice

ncbi_organism_name: Pseudomonas promysalinigenes

ncbi_submitter: KU Leuven


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Nares swab

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG13187

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge microbiome low temperature; high CO2

ncbi_organism_name: Candidatus Marinacidobacterium portitor

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;f__Candidatus Marinacidobacteraceae;g__Candidatus Marinacidobacterium;s__Candidatus Marinacidobacterium portitor


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Paraburkholderia sp. EG287A

ncbi_submitter: The James Hutton Institute


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium HGW-Deltaproteobacteria-2


ncbi_country: China: Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Brazil

ncbi_isolation_source: water of Tucunduba creek

ncbi_organism_name: Vibrio cholerae LMA3984-4

ncbi_submitter: Rede Paraense de Genômica e Proteômica


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_country: Egypt

ncbi_isolation_source: fecal isolate from poultry farm worker

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_isolation_source: human gut

ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_assembly_name: freshwater MAG --- Umea3_bin-3207

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Bradyrhizobium oligotrophicum S58

ncbi_submitter: The University of Sydney


ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Ariel university


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Toulouse Biotechnology Institute


ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Psychrilyobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: freshwater MAG --- Ki3-D3_bin-0775

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Pelagicoccus albus

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA7013

ncbi_submitter: University of Queensland


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: Tibetan Plateau glacier

ncbi_organism_name: Arthrobacter sp. B1805

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: Germany

ncbi_isolation_source: pig

ncbi_organism_name: Streptococcus suis

ncbi_submitter: VacoME


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: sichuan university


ncbi_organism_name: Bordetella sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Brazil: Londrina

ncbi_isolation_source: blood

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Nigeria

ncbi_isolation_source: wound

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chicago


ncbi_organism_name: Candidatus Pelethomonas sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Pelethomonas;x__unclassified Candidatus Pelethomonas;s__Candidatus Pelethomonas sp.


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_country: China: Xinjiang

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Agricultural Science


ncbi_country: Malaysia: Johor Bahru

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Pelagibacteraceae bacterium


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides uniformis dnLKV2


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Lachnobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Caecibacter massiliensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:230

ncbi_submitter: DTU


ncbi_organism_name: Rhizobium giardinii bv. giardinii H152

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Rhizobium/Agrobacterium group;g__Rhizobium;s__Rhizobium giardinii;x__Rhizobium giardinii bv. giardinii;x__Rhizobium giardinii bv. giardinii H152


ncbi_submitter: University of Waterloo


ncbi_isolation_source: permafrost active layer soil

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG219

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: Woodley Reading

ncbi_isolation_source: municipal solid waste soil

ncbi_organism_name: Agrobacterium sp. B1(2019)

ncbi_submitter: Brazilian Center for Research in Energy and Materials (CNPEM)


ncbi_country: USA: Georgia

ncbi_isolation_source: human feces

ncbi_organism_name: Eubacteriaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Microbacterium sp. No. 7

ncbi_strain_identifiers: No. 7

ncbi_submitter: INRS


ncbi_organism_name: Pseudomonas canadensis

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_country: USA: Chicago

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: the seqafrica consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Thailand

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Mahidol University


ncbi_submitter: SC


ncbi_country: Iran

ncbi_isolation_source: Nasophyarynx swab

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: PASTEUR INSTITUTE OF IRAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Cote d Ivoire: Thai National Park

ncbi_isolation_source: fruit residues (memencylon)

ncbi_organism_name: Streptococcus sp. DD10

ncbi_submitter: University of Kaiserslautern


ncbi_country: Japan

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces lavendulae subsp. lavendulae

ncbi_strain_identifiers: NBRC 3146

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: USA: CO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Groningen


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_organism_name: Candidatus Njordibacter sp. Uisw_058

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Candidatus Njordibacteraceae;g__Candidatus Njordibacter;x__unclassified Candidatus Njordibacter;s__Candidatus Njordibacter sp. Uisw_058


ncbi_organism_name: Salmonella sp. CQ22WZ0206SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP29_B2_surf _bin _15

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP29_B2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: Monash University


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: BiOSSE


ncbi_organism_name: uncultured Rhodospirillaceae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: China University of Geosciences Beijing

ncbi_isolation_source: sediment

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Sutterellaceae bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Hawai; Hilo

ncbi_organism_name: Mycolicibacterium rufum

ncbi_submitter: Uppsala University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Faecalicoccus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: Canada: Chicoutimi

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Argentina: Vila; Santa Fe

ncbi_isolation_source: first pond of the AUR serial dairy industry stabilization pond system

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: INTA


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_country: Mexico: Cuautla

ncbi_isolation_source: Food (solid beef)

ncbi_submitter: InDRE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Houston


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Portland State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: Netherlands

ncbi_isolation_source: White kimchii

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Uganda: Kagona wetland; Nabugabo; Masaka

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter tropicus

ncbi_submitter: University of Innsbruck


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Desulfitobacterium sp. LBE

ncbi_strain_identifiers: LBE

ncbi_submitter: JGI


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Spirosoma fluviale

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Florida

ncbi_isolation_source: erythrocytes

ncbi_organism_name: Anaplasma marginale str. Florida

ncbi_strain_identifiers: Florida

ncbi_submitter: Washington State University


ncbi_country: United Kingdom: Sutton Bonington

ncbi_isolation_source: cattle slurry

ncbi_organism_name: Oceanospirillaceae bacterium ASx5O

ncbi_submitter: University of Nottingham


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: in vitro mutant of the strain KE5351

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Microbacterium sp. MMO-10

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human feces metagenome


ncbi_country: Brazil: Minas Gerais; Slaughter house at Piranga s Valley

ncbi_isolation_source: lung

ncbi_organism_name: Mesomycoplasma hyopneumoniae

ncbi_submitter: Federal University of Vicosa


ncbi_country: Argentina: Viale; Entre Rios Province

ncbi_isolation_source: Bulk soil

ncbi_organism_name: Pseudomonas donghuensis

ncbi_submitter: Universidad Nacional de Quilmes


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Belgian Mycoplasma consortium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: United Kingdom: London

ncbi_isolation_source: Spleen

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1085

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Fimbriimonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Norway

ncbi_isolation_source: skin lesion

ncbi_organism_name: Tenacibaculum finnmarkense genomovar ulcerans

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Catenulispora yoronensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_name: De novo assembly of single-cell genomes

ncbi_genome_category: derived from single cell

ncbi_isolation_source: raw seawater

ncbi_organism_name: Prochlorococcus sp. scB243_498B22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Treponema sp.


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1045092

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Prevotella disiens


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium sp. E1747

ncbi_submitter: JCVI


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Pseudomonas avellanae

ncbi_submitter: INRA


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Alkalibaculum bacchi

ncbi_submitter: University of Trento


ncbi_country: Switzerland

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Canada: Alberta

ncbi_isolation_source: Toe

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: China: Chongqing

ncbi_organism_name: Enterobacter mori

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Crude oil

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_submitter: UNICAMP


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: urine from female

ncbi_organism_name: Escherichia coli TOP2652

ncbi_submitter: National University of Singapore, Genome Institute of Singapore


ncbi_isolation_source: clinical


ncbi_country: South Korea

ncbi_isolation_source: jeotgal

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Kyunghee University


ncbi_organism_name: Xanthomonas oryzae pv. oryzicola

ncbi_submitter: Cornell University


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Frondihabitans sp. 4ASC-45

ncbi_submitter: University of Washington


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Azospirillum sp. A29

ncbi_submitter: University of Minnesota


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Trueperella pyogenes

ncbi_submitter: University of Bern


ncbi_organism_name: Enterococcus sp. AZ011

ncbi_submitter: Broad Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: South Korea:Pyeongchang-gun

ncbi_isolation_source: breast

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Seoul National University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: BGI


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA

ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: International Space Station

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Desulfurella sp.


ncbi_country: Israel: near Tel Aviv airport

ncbi_isolation_source: soil

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Norwegian University of Life Sciences


ncbi_isolation_source: Stool

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: IP


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Lu Zhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SOUTHWEST MEDICAL UNIVERSITY


ncbi_submitter: University of Central Florida


ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: SGSC 2182

ncbi_submitter: National Center for Biotechnology Information


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Calditrichales bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_organism_name: Acinetobacter variabilis


ncbi_country: USA: California

ncbi_isolation_source: Human_no contact with swine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Darrell Bayles


ncbi_organism_name: Enterobacter sp. DNB-S2

ncbi_submitter: Northeast Agricultural University


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Opitutia bacterium UBA5964

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__unclassified Opitutia;s__Opitutia bacterium UBA5964


ncbi_country: Germany

ncbi_isolation_source: chick-box-paper

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Freie Universitaet Berlin


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus mitis SK1080

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus mitis group;s__Streptococcus mitis;x__Streptococcus mitis SK1080


ncbi_country: USA: Massachusetts

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Health Canada


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Pluralibacter gergoviae

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mailhella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Filifactoraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: vagina

ncbi_organism_name: Veillonella sp. DNF00869

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA:Missouri;Saint Louis

ncbi_isolation_source: cell culture

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_name: freshwater MAG --- Ki2-D3_bin-0364

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Brazil:Santa Catarina; Itaji

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Haerbin

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: CAU


ncbi_organism_name: Bacteroides faecis


ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Micromonospora echinofusca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: US Food and Drug Administration


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: Thailand

ncbi_submitter: SC


ncbi_organism_name: Paenarthrobacter sp. NPDC089316


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Pseudobutyrivibrio sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Priestia megaterium


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom

ncbi_isolation_source: slurry solids

ncbi_submitter: University of Nottingham


ncbi_organism_name: Rathayibacter sp. PhB152

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus MISS6134

ncbi_submitter: Broad Institute


ncbi_country: China: Hubei province; Enshi city

ncbi_isolation_source: rhizobacterium

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Yangtze University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Thermoplasmatota archaeon

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG11

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_isolate: AOP21_A1_surf _bin _9

ncbi_organism_name: Lactobacillus sp.

ncbi_strain_identifiers: AOP21_A1_surf _bin _9

ncbi_submitter: Genoscope