ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_level: Scaffold

ncbi_submitter: Centre for Microbiome Research


gtdb_representative: f

ncbi_isolation_source: Human saliva

ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Tank Milk

ncbi_organism_name: Mycolicibacterium fortuitum

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Canada: Manitoba;Winnipeg

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Enterococcus innesii

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Umea_bin-00440

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcus sp.

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 22

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Psychrobacter celer

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Candidatus Aegiribacteria sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__FCB group incertae sedis;g__Candidatus Aegiribacteria;x__unclassified Candidatus Aegiribacteria;s__Candidatus Aegiribacteria sp.


ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Escherichia coli O111:H8

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The Second Affiliated Hospital & Yuying Children's Hospital of Wenzhou Medical University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04592

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Kenya Medical Research Institute


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Human feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: The University of Tokyo


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-1-4

ncbi_submitter: Curtin University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Pseudomonas trivialis

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: MD

ncbi_isolation_source: peppercorn powder

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Brazil:Bahia; Salvador

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Candidatus Brachybacter algidus

ncbi_submitter: Aalborg University


ncbi_country: Russia:Moscow region

ncbi_isolation_source: coke and gas plant treatment facilities

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: IBPM RAS


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-461-B04

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Bacillus siamensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_country: India

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: San Diego State University


ncbi_country: Brazil: Sao Jose do Rio Preto

ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: FAMERP


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Rutgers University


ncbi_assembly_name: Rumen uncultured genome RUG10950

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Italy

ncbi_isolation_source: milk

ncbi_organism_name: Listeria newyorkensis

ncbi_submitter: University of Milan


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Chile: Santiago

ncbi_isolation_source: Pulmonary secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_country: Tanzania

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: ICAR - Indian Veterinary Research Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acetobacter orleanensis NRIC 0473

ncbi_strain_identifiers: NRIC 0473

ncbi_submitter: Tokyo University of Agriculture


ncbi_organism_name: Lachnospiraceae bacterium AM53-6

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacillus amyloliquefaciens TA208

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens;x__Bacillus amyloliquefaciens TA208


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Antioquia


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: saline soil

ncbi_organism_name: Phytoactinopolyspora halotolerans

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: CCTCC AB 2017055

ncbi_submitter: Hebei North University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_organism_name: Helicobacter sp. UBA3407


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Beijing Honor Tech Co.,Ltd


ncbi_country: China: Qinghai

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: AAFC


ncbi_country: China

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: China Agricultural University


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Actinotignum timonense

ncbi_submitter: Capital Region


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yonsei University


ncbi_country: Antarctica

ncbi_isolation_source: Deep Mariana trench

ncbi_organism_name: Dermacoccus abyssi

ncbi_submitter: Kingston University


ncbi_country: North Sea: German Bight (Helgoland Mud Area)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Bremen


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Phascolarctobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Luzhou

ncbi_isolation_source: secretion

ncbi_strain_identifiers: ECC

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Deinococcus radiophilus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella sp. 90847

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Qingdao Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_isolation_source: Faeces


ncbi_assembly_name: Peptoclostridium difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Beijing; Lake Miyun

ncbi_isolation_source: sediments

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Portnoybacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Portnoyibacteriota;x__unclassified Candidatus Portnoybacteria;s__Candidatus Portnoybacteria bacterium


ncbi_country: Brazil:Santa Catarina; Passo de Torres

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Denmark

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Singapore

ncbi_isolation_source: ETTA

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_assembly_level: Chromosome

ncbi_country: Benin

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: New Zealand: Tikitere

ncbi_isolation_source: siliceous digitate sinter (TIK2)

ncbi_submitter: The University of Auckland


ncbi_isolation_source: dentin-pulp

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: UNAERP


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Arizona

ncbi_isolation_source: wound

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Utah


ncbi_assembly_name: freshwater MAG --- Loc090907-8-6m_bin-873

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: fece

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: VHProbi Y39

ncbi_submitter: Nutrition &Health Technology Center


ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Rothia dentocariosa


ncbi_organism_name: Streptomyces abikoensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidovorax sp. SUPP2539

ncbi_submitter: Shizuoka University


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Desulfosalsimonadaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Sphingomonas sp.


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Mariniplasma sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Trichlorobacter lovleyi

ncbi_submitter: Institute of Applied Ecology (CAS)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Marinicauda pacifica

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Paraburkholderia sp. GAS32

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Antarctica: Livingston island

ncbi_organism_name: Pseudomonas sp. AL03

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Austria

ncbi_isolation_source: nasal cavity

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_organism_name: uncultured Halieaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Flavonifractor avistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: San Diego; Sunset Cliffs

ncbi_isolation_source: Tubeworm

ncbi_organism_name: Aquimarina sp. MMG015

ncbi_submitter: San Diego State University


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_country: India: Arabian Sea

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Sulfitobacter sp. 15WGC

ncbi_submitter: Bose Institute


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Akkermansiaceae bacterium UBA4589

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK206

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: FL

ncbi_isolation_source: water

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: LR-S

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Russia: Sverdlovsk region

ncbi_isolation_source: Mashed potato

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Canada: Lacombe

ncbi_organism_name: Shigella flexneri

ncbi_submitter: AAFC


ncbi_country: USA: Detroit Medical Center

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Candidatus Competibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__unclassified Candidatus Competibacteraceae;s__Candidatus Competibacteraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: addis ababa university


ncbi_assembly_name: S.aureus LVP2

ncbi_country: India

ncbi_isolation_source: corneal scrapping from a 50-year-old female with history of rheumatoid arthritis

ncbi_organism_name: Staphylococcus aureus LVP2

ncbi_submitter: National Center for Biological Sciences


ncbi_organism_name: Lancefieldella parvula

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2615840719 annotated assembly

ncbi_organism_name: Salipiger thiooxidans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_country: Switzerland

ncbi_isolation_source: sphagnum bog; Switzerland

ncbi_organism_name: Gloeocapsa sp. PCC 73106

ncbi_submitter: JGI


ncbi_country: India: Allahabad

ncbi_isolation_source: Urease positive gastric biopsy

ncbi_organism_name: Brucella intermedia M86

ncbi_submitter: CSIR-National Chemical Laboratory, Pune


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-B18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Treponema phagedenis

ncbi_submitter: University of Bern


ncbi_country: China: Shenzhen; Guangdong

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium liaoningense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Hong Kong: Kiu Tsui Chau

ncbi_organism_name: Ruegeria sp. HKCCD4318

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG10494

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Eubacterium ruminantium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Chryseobacterium schmidteae

ncbi_submitter: URMITE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Lausanne


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Geogentics


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_organism_name: Stenotrophomonas sp. SORGH_AS_0321

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Planktothrix sp. FACHB-1365

ncbi_submitter: South China Normal University


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas phaseoli

ncbi_submitter: Ottawa Research and Development Center


gtdb_type_species_of_genus: t

ncbi_organism_name: Allosediminivita pacifica


ncbi_organism_name: Mucilaginibacter sp. L3T2-6

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Psychrobacter proteolyticus

ncbi_submitter: University of Chicago


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Russia: Krasnodar Krai; Kuban

ncbi_isolation_source: pheasant; gastrointestinal tract

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Paraconexibacter sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human skin

ncbi_organism_name: Finegoldia magna

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus suis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: AAFC


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Austria: Salzburg

ncbi_isolation_source: Vagina

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Isosphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Greece: Spata

ncbi_isolation_source: roots; endophytic

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Agricultural University of Athens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Colorado; Fort Collins

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: University of Wisconsin Hospital

ncbi_organism_name: Enterococcus faecalis EnGen0409

ncbi_submitter: Broad Institute


ncbi_organism_name: Lentilactobacillus buchneri

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_country: USA: Mississippi

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio metoecus

ncbi_submitter: University of Alberta


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Taiwan

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: national health research institutes


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Minisyncoccia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Halarcobacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Sponge: Petrosia ficiformis


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA:New York; Morrisania

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_assembly_name: Xanthomonas sp. CPBF 761 hybrid assembly 2

ncbi_isolate: Xanthomonas euroxanthea CPBF 761 isolated from C. illinoinensis

ncbi_organism_name: Xanthomonas euroxanthea

ncbi_submitter: CIBIO-Inbio


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Zhejiang university


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Carboxylicivirga taeanensis

ncbi_strain_identifiers: MEBiC 08903

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Brucella rhizosphaerae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_organism_name: Campylobacter sp. VTCC 70190

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Universidad de Cantabria


ncbi_organism_name: Salmonella sp. NW1160

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. NW11


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Patescibacteria group bacterium


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Succiniclasticum sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Clostridium sp. UBA7503

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: urine

ncbi_submitter: Hangzhou Medical University


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Advenella sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Florida

ncbi_isolation_source: field isolate

ncbi_organism_name: Brucella abortus 76-1413

ncbi_submitter: Broad Institute


ncbi_assembly_name: Rumen uncultured genome RUG11193

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_isolation_source: human gut

ncbi_organism_name: Yersinia kristensenii

ncbi_submitter: EMG


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Guangzhou

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: South China University of Technology (SCUT)


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Treponema denticola SP23


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Malaysia

ncbi_isolation_source: waterfall

ncbi_organism_name: Pantoea stewartii

ncbi_submitter: University of Malaya


ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: GuangXi

ncbi_isolation_source: chicken

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: GX-Pm

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.


ncbi_assembly_name: IMG-taxon 2708742472 annotated assembly

ncbi_organism_name: Plantibacter elymi (nom. nud.)

ncbi_strain_identifiers: VKM Ac-1784

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Alistipes communis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolate: Helicobacter suis

ncbi_isolation_source: Pig stomach

ncbi_organism_name: Helicobacter suis

ncbi_strain_identifiers: Helicobacter suis;35;P13

ncbi_submitter: GHENT UNIVERSITY


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China: Taihang mountain

ncbi_isolation_source: mountain soil

ncbi_organism_name: Chryseobacterium culicis


ncbi_country: Ireland

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_country: Australia: Brisbane

ncbi_organism_name: Megasphaera massiliensis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: France: Elbeuf

ncbi_isolation_source: urine

ncbi_submitter: Normandie Univ


ncbi_country: Czech Republic

ncbi_isolation_source: pleural cavity


ncbi_country: China: Gansu; Aksay

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: China: Hunan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ellagibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Indiana

ncbi_isolation_source: lung

ncbi_submitter: Purdue University


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Ragimbeau


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: California; Eel River; Elder Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Curvibacter sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China

ncbi_isolation_source: wheat rhizosphere

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Henan Academy of Agricultural Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Milan


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Lachnospiraceae bacterium UBA7257

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Niteroi

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Santa Clara University


ncbi_organism_name: Oleispira sp.

ncbi_submitter: University of East Anglia


ncbi_country: Japan

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_organism_name: Arthrobacter koreensis

ncbi_strain_identifiers: Gar CS 10

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Rhizobiales bacterium CCH11-D2

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: fecal material

ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_strain_identifiers: Gottschalk 1002A

ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae;x__Streptococcus agalactiae str. Gottschalk 1002A


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Limnochordaceae bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Oregon State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli O157:H7 str. EDL933

ncbi_submitter: East China University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EDL933


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_organism_name: Actinomyces respiraculi

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides sp. AF14-59

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: Norway: Viken

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: Germany: Wadden Sea

ncbi_isolation_source: culture containing one eukaryotic species and its associated bacterial epibionts isolated from marine sediment

ncbi_organism_name: Arcobacter sp. EP1

ncbi_submitter: University of Calgary


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: India: Chandigarh

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Colorado State University


ncbi_country: Thailand

ncbi_organism_name: Aeromonas schubertii

ncbi_submitter: Chulalongkorn University


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2022EL-00747


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Escherichia coli O18:K1

ncbi_submitter: Uliege - Faculty of Veterinary Medicine


ncbi_organism_name: Dinoroseobacter sp. S124A

ncbi_submitter: Shenzhen University


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Dickeya oryzae

ncbi_submitter: NIVIP


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Ireland

ncbi_isolation_source: Mushroom environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Alteromonas sp. D210916BOD_24

ncbi_submitter: Laboratory of Biosynthetic Chemistry, Faculty of Engineering, Hokkaido University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7143

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_organism_name: Streptococcus agalactiae GB00002

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Germany

ncbi_isolation_source: rumen content

ncbi_organism_name: Clostridium sp. ZBS12

ncbi_submitter: KULeuven


ncbi_country: China: Hubei; Huangshi

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of Minnesota Duluth


ncbi_country: Cameroon

ncbi_organism_name: Wolbachia endosymbiont of Drosophila yakuba

ncbi_submitter: University of Montana


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Desulfobacter postgatei

ncbi_submitter: Environmental Microbiology Lab


ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Kvitko Lab


ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG14457

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom: Cambridge

ncbi_organism_name: Escherichia coli

ncbi_submitter: MRC Laboratory of Molecular Biology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Porphyromonas catoniae

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Flavobacterium sp. D4

ncbi_submitter: Guangdong Academy of Sciences


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA4616

ncbi_submitter: University of Queensland


ncbi_organism_name: Oribacterium parvum


ncbi_country: USA: DC

ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: China: Urumqi

ncbi_isolation_source: Pleural fluid

ncbi_submitter: University College London (UCL)


ncbi_country: Thailand: Hat Yai City; Songkhla province

ncbi_isolation_source: environmental

ncbi_submitter: National University of Singapore and Genome Institute of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Bodega Bay; California

ncbi_isolation_source: nodule

ncbi_organism_name: Paenibacillus sp. tmac-D7

ncbi_submitter: Washington State University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA

ncbi_isolation_source: liver abcess

ncbi_organism_name: Burkholderia mallei 2000031281

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium


ncbi_country: India

ncbi_isolation_source: urine

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: USA: South Carolina

ncbi_isolation_source: pharyngeal mucosa

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Yellowstone National Park; GGS063 Spring

ncbi_isolate: Bin S4

ncbi_isolation_source: Sediments from shelf

ncbi_organism_name: Caldimicrobium sp.

ncbi_strain_identifiers: Bin S4

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 34

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Australia: Newcastle

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Massachusetts

ncbi_isolation_source: zooplankton collected from plum island

ncbi_organism_name: Vibrio crassostreae 9ZC77

ncbi_submitter: Broad Institute


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: South Africa: Durban

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: fecal composite of dairy cows

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: USA: Minnesota

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus sputorum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacillus anthracis str. A0174

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus anthracis;x__Bacillus anthracis str. A0174


ncbi_assembly_name: freshwater MAG --- KT4_bin-315

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: New York

ncbi_organism_name: Buchnera aphidicola (Rhopalosiphum maidis)

ncbi_strain_identifiers: BTI

ncbi_submitter: Cornell University


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Radboud University


ncbi_isolation_source: Distal colon

ncbi_organism_name: Thomasclavelia cocleata


ncbi_country: Kuwait

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterococcus durans

ncbi_submitter: Technical University of Munich


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Ghent University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The First Hospital of Lanzhou University


ncbi_organism_name: Undibacterium sp. WLX3042

ncbi_submitter: Shenzhen Center for Disease Control and Prevention


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: fermentation

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Negativicutes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Sphingomonas sp. HT-1

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Lancefieldella parvula

ncbi_submitter: EMG


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; Agua Caliente

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: China: Luzhou

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_country: Montserrat: Soufriere Hills

ncbi_isolation_source: Geothermal pool

ncbi_organism_name: Acidithiobacillus ferridurans

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Carnobacterium sp.


ncbi_country: Argentina

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Helicobacter hepaticus ATCC 51449

ncbi_submitter: Univ. Wuerzburg


ncbi_organism_name: Enterococcus sp. E5-79

ncbi_submitter: Institute of Marine Research


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Tessaracoccus sp.

ncbi_submitter: Aalborg University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: China: Hangzhou

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Klebsiella sp. RHBSTW-00484

ncbi_submitter: The REHAB Consortium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Sichuan

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: 02-04446 clc bio denovo

ncbi_country: Germany

ncbi_isolation_source: stool

ncbi_submitter: University Hospital Muenster

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O174:H2;x__Escherichia coli STEC O174:H2 str. 02-04446


ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Mozambique: Manhica

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Ramlibacter sp.


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Muriicola sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Photobacterium alginatilyticum

ncbi_submitter: Ocean University of China


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas sp. REB1044

ncbi_submitter: Louisiana State University


ncbi_country: Mayotte

ncbi_isolation_source: water

ncbi_organism_name: Leptospira bouyouniensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Bangladesh

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bangladesh Agricultural University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium NSJ-171

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Conexibacter sp. JD483

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Candidatus Udaeobacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;o__Chthoniobacterales;f__Chthoniobacteraceae;g__Candidatus Udaeobacter;x__unclassified Candidatus Udaeobacter;s__Candidatus Udaeobacter sp.


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Clemson University


ncbi_country: South Africa: Prince Cyril Zulu CDC

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0082

ncbi_submitter: Broad Institute


ncbi_country: China: Mu Us Desert

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter crusticola

ncbi_submitter: Chinese Academy of Forestry


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_submitter: NARO Institute of Fruit Tree Science (NIFTS), National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas arboricola;x__Xanthomonas arboricola pv. pruni;x__Xanthomonas arboricola pv. pruni MAFF 301420


ncbi_organism_name: Clostridium saccharoperbutylacetonicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: Ireland: Cork

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Empedobacter falsenii


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Chryseobacterium sp. MMO-127

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Pedobacter colombiensis

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T64 sea water enriched with oil for 64 days

ncbi_organism_name: Alphaproteobacteria bacterium 46_93_T64

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_assembly_name: IMG-taxon 2608642167 annotated assembly

ncbi_organism_name: Escherichia coli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium 10-1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium sp. CTNIH6

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Aeromonas diversa

ncbi_submitter: Sher-e-Bangla Agricultural University


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Environmental; agricultural soil

ncbi_organism_name: Paraburkholderia terricola

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Ghana: Tamale

ncbi_isolation_source: Chevon

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: clinical

ncbi_submitter: Food and Drug and Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR7334

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Oregon State University


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: bioreactor

ncbi_organism_name: Firmicutes bacterium UBA5824

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5824


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Dictyoglomus turgidum

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Desulfovibrio legallii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kasetsart University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bacillus cereus group sp. Bce010

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce010


ncbi_organism_name: Candidatus Phosphoribacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Utah


ncbi_assembly_name: Rumen uncultured genome RUG10050

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: faeces

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_organism_name: Actinomycetes bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acinetobacter baumannii UMB001

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: milk

ncbi_organism_name: Macrococcoides bohemicum

ncbi_submitter: Teagasc Food research


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Streptococcus agalactiae STIR-CD-26

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Japan: Hakuba Happo Hot Spring

ncbi_isolation_source: hot spring

ncbi_submitter: National Institute of Advanced Industrial Science and Technology

ncbi_taxonomy: d__Bacteria;p__Candidatus Lithacetigenota;c__;o__;f__;g__Candidatus Lithacetigena;s__Candidatus Lithacetigena glycinireducens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Lithacetigenota;g__Candidatus Lithacetigena;s__Candidatus Lithacetigena glycinireducens


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_submitter: University of Queensland


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey: Hatay

ncbi_isolation_source: wastewater

ncbi_submitter: Yangzhou University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Candidatus Pullichristensenella sp.

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pullichristensenella;x__unclassified Candidatus Pullichristensenella;s__Candidatus Pullichristensenella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Fish - Liver tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_strain_identifiers: YRB

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Suzhou

ncbi_isolation_source: feces

ncbi_organism_name: Falcatimonas sp. MSJ-15

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Cancer Hospital Chinese Academy of Medical Sciences, Shenzhen Center


ncbi_country: USA: Maine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Enterocloster aldenensis

ncbi_submitter: University of Copenhagen


ncbi_country: USA: New York

ncbi_organism_name: Enterococcus faecium EnGen0256

ncbi_submitter: Broad Institute


ncbi_isolation_source: marine water

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Nebraska

ncbi_submitter: USDA


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Minho


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces fungicidicus

ncbi_submitter: University of Manchester


ncbi_isolation_source: Stool Culture

ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Nitrosomonas sp. Is37

ncbi_submitter: Miami University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micrococcus luteus


ncbi_isolation_source: Ileo-caecum


ncbi_assembly_name: IMG-taxon 2609459763 annotated assembly

ncbi_organism_name: Streptomyces sp. cf124

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: CSC Conventional; Balruddery Farm; Angus

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: The James Hutton Institute


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Intestinimonas merdavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;s__Candidatus Intestinimonas merdavium


ncbi_isolation_source: Japanese unhulled rice

ncbi_organism_name: Pseudomonas azotoformans

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: glass sponge collected from seamount of South China Sea

ncbi_organism_name: Nitrospina sp. LS_NOB

ncbi_submitter: Hong Kong University of Science and Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Proteon Pharmaceuticals


ncbi_country: USA: WI

ncbi_isolation_source: activated sludge

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium UBA5073


ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: isolateK

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yangzhou University


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Christensenella sp. UBA3770


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: caecum

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Medicines Directorate


ncbi_assembly_name: Rumen uncultured genome RUG11909

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Planomicrobium okeanokoites

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf120

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Pasteurellaceae bacterium 12591

ncbi_submitter: University of Southern Denmark


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Peru


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: bacterium


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Porcinotec Co., Ltd


ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: University of Oxford


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University hospital Lubeck


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Give


ncbi_organism_name: Citrobacter freundii


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Jatrophihabitans sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Miguel Servet University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: uncultured Thalassobaculaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Permianibacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Belgium: Liege

ncbi_isolation_source: nostril

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: EQ02_MRSA_SCCmec type IVa

ncbi_submitter: University of Liege-Faculty of veterinary medicine


ncbi_organism_name: Clostridiales bacterium UBA4696


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Hungatella sp. UBA5385

ncbi_submitter: University of Queensland


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Peritoneal Fluid

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Animal lymphoma pre-scapular

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: UFMG


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter baumannii 6013113

ncbi_submitter: WUGSC


ncbi_isolate: WATER

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: WATER;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rhodovarius sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-163

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_strain_identifiers: CVUAS 3338

ncbi_submitter: Chemisches und Veterinaeruntersuchungsamt Stuttgart


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Zurich


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Streptococcus constellatus

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: nasal cavity mucosa

ncbi_organism_name: Streptococcus canis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_isolation_source: feces swab

ncbi_organism_name: Leclercia sp. G3L

ncbi_submitter: College of Veterinary Medicine,Northwest A&F University


ncbi_country: South Africa: Limpopo province

ncbi_isolation_source: leaves

ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: University of Johannesburg


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_organism_name: Xylanibacter brevis P6B11

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_country: Germany: North sea

ncbi_organism_name: Dinoroseobacter shibae

ncbi_submitter: DSMZ-German Collection of Microorganisms and Cell Cultures


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; Equitorial atlantic

ncbi_organism_name: SAR86 cluster bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Sulfitobacter sp. W002

ncbi_submitter: Ocean University of China


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: nivip

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Microvirgula aerodenitrificans

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Neisseria gonorrhoeae


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Microbacterium sp. Leaf288

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Montana State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: USA: Montana

ncbi_isolation_source: Nares

ncbi_submitter: South American MRSA Consortium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Candidatus Scatovivens faecipullorum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Scatovivens;s__Candidatus Scatovivens faecipullorum