ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Switzerland

ncbi_genome_representation: full

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: environmental swab veterinary clinic

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Zurich


ncbi_assembly_level: Scaffold

ncbi_country: South Africa: Eastern Cape

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 33

ncbi_submitter: National Institute for Communicable Diseases


ncbi_genome_category: derived from metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: Previously collected from blood cultures (R)

ncbi_isolation_source: Blood

ncbi_submitter: Erasmus University Medical Center


gtdb_representative: t

ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin108

ncbi_isolation_source: soil

ncbi_organism_name: Myxococcota bacterium

ncbi_strain_identifiers: MSU bin108

ncbi_submitter: Monash University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces griseoluteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aquirufa novilacunae

ncbi_submitter: University of Innsbruck


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Shewanella sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces mirabilis


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC057682


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Eubacterium sp.


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Veer Narmad South Gujarat University


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Acinetobacter sp. YZS-X1-1

ncbi_submitter: Guangzhou Institute of Advanced Technology, Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Tepidisphaerales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Oregon State University Cascades


ncbi_country: Ethiopia: Tigray; Central Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Terrisporobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_organism_name: Acinetobacter lactucae

ncbi_submitter: University of Florida


ncbi_organism_name: Candidatus Planktophila sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__unclassified Candidatus Planktophila;s__Candidatus Planktophila sp.


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: Loyola University Chicago


ncbi_country: Brazil: Campos dos Goytacazes

ncbi_isolation_source: Vermicompost

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: UENF


ncbi_organism_name: Blattabacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: South Korea: Yangju

ncbi_organism_name: Sphingobium terrigena

ncbi_refseq_category: reference genome

ncbi_submitter: Chung-Ang University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Pseudomonas brenneri

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Hyphomonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Acholeplasmatales bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Limimaricola sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Sneathia sp.


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Honduras: Copan

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan: Fukuoka

ncbi_organism_name: Pseudomonas morbosilactucae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)


ncbi_country: Italy: L Aquila

ncbi_submitter: IZSAM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Providencia vermicola

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Thermoleophilaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: India: Telangana; Patancheru

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG14216

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_submitter: Novartis Vaccines


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD14621

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_country: Australia: Darwin; Northern Territory

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Menzies School of Health Research


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Huashan Hospital, Fudan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome


ncbi_submitter: Shinshu university hospital


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Vibrio sp. M260112

ncbi_submitter: CIAD, A.C.


ncbi_isolation_source: invasive

ncbi_submitter: SC


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Cornell University


ncbi_country: Australia: NSW

ncbi_isolation_source: feces

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_country: USA: Key Largo; FL

ncbi_isolation_source: gut

ncbi_organism_name: Cephaloticoccus capnophilus

ncbi_submitter: Calvin College


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: United States Department of Agriculture - ARS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus


ncbi_country: Russia: Moscow

ncbi_isolation_source: stool from a Russian tourist who visited India in 2010

ncbi_submitter: RARI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor;x__Vibrio cholerae O1 biovar El Tor str. L-3226


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNICAMP


ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. HMSC072D05

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Sweden

ncbi_organism_name: Mycobacterium tuberculosis BTB10-277

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: USA: WA

ncbi_organism_name: Campylobacter coli 1891


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_assembly_name: Rumen uncultured genome RUG14558

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: The University of Hong Kong


ncbi_isolate: AOP1_B1_surf _bin _17

ncbi_organism_name: Proteus vulgaris

ncbi_strain_identifiers: AOP1_B1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Stanford University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Solicola sp. PLA-1-18

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: uncultured Polynucleobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Eubacterium] siraeum


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: NHGRI/NIH


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: James Cook University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: AAFC


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: UNIVERSITY OF MELBOURNE


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_isolation_source: blood

ncbi_submitter: Zhengzhou University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Colombia: Magdalena

ncbi_isolation_source: marine water

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolate: Burkholderiales sp. RBC005

ncbi_isolation_source: wastewater biofilm

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_strain_identifiers: Burkholderiales sp. RBC005

ncbi_submitter: UNIVERSITY OF WATERLOO


ncbi_country: Turkey: Kayseri

ncbi_isolation_source: Fish Farm

ncbi_organism_name: Flavobacterium kayseriense

ncbi_submitter: Erciyes University


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D8 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland

ncbi_isolation_source: skim milk powder (medium heat)

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_strain_identifiers: NCPPB 1058

ncbi_submitter: University of Exeter

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans


ncbi_organism_name: uncultured bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Italy

ncbi_isolation_source: blood cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 168

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.2 filter

ncbi_organism_name: Clostridiales bacterium GWB2_37_7

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: University of Alberta


ncbi_submitter: National Key Laboratory of Agricultural Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Guangxi

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Rhizobium sp. BK377


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christiangramia sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Thailand

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA: Boston

ncbi_organism_name: Bacteroides salyersiae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: gut

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 6-537-08_S1_C3

ncbi_submitter: IGS


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_country: USA

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: The Research Institute at Nationwide Children's Hospital


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: Portugal

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Laval


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Sphingobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome hRUG893

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Montana State University


ncbi_assembly_name: Rumen uncultured genome RUG11880

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Chitinophagia bacterium

ncbi_submitter: Clemson University


ncbi_country: China: Shenzhen

ncbi_organism_name: Agathobaculum butyriciproducens

ncbi_submitter: BGI


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_isolation_source: Floor

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: Retail pork

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Paenarthrobacter sp. YL

ncbi_strain_identifiers: YL

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Roseivirga sp. UBA838

ncbi_submitter: University of Queensland


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-14

ncbi_submitter: Rothamsted Research


ncbi_assembly_name: freshwater MAG --- KR2_bin-0254

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_submitter: Keio University


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_submitter: Oregon State University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Terribacillus saccharophilus

ncbi_strain_identifiers: MER 108

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Acinetobacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: NC

ncbi_isolation_source: Plant; Corn

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Beijing

ncbi_isolation_source: freshwater lake anaerobic enchiment culture with carbon source leucine

ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. convolvuli

ncbi_strain_identifiers: NCPPB 2498

ncbi_submitter: University of Exeter


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Staphylococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: not available

ncbi_organism_name: Urinicoccus massiliensis


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_assembly_name: freshwater MAG --- MJ120730B_bin-721

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Abony


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Rhodanobacter sp.


ncbi_organism_name: Pseudomonas sp. YL-218 TE3947

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Institute for Sustainable Agriculture - CSIC


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium D16-50

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: bacterium 1xD42-87


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_level: Chromosome

ncbi_country: USA: Washington

ncbi_organism_name: Rhodococcoides fascians A25f

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: IA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Beltsville; MD

ncbi_organism_name: Spiroplasma sp. BIUS-1

ncbi_submitter: Academia Sinica


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus sp. UMB10185

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Hong Kong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: CA

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Mali: Point G Hospital

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis MAL020131

ncbi_submitter: Broad Institute


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Bacillus sp. 105MF

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 105MF


ncbi_country: Canada: Ottawa; Ontario

ncbi_organism_name: Rhizobium sp. T1473

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California

ncbi_isolation_source: derived from Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

ncbi_submitter: Monash University Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolate: Urine

ncbi_strain_identifiers: STp 7;O78:H4;STw 23;NILS48:C;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: central veneous catheter

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: IMMH Institute for medical microbiology and hygiene


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: carageenan 40-100 m particle (artificial) mid colonization

ncbi_organism_name: Paracoccus sp. C2R09

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. C2R09


ncbi_organism_name: uncultured Butyribacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Salmonella sp. NW1122

ncbi_submitter: Sichuan University


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Leptotrichia wadei

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Nevskia sp.


ncbi_country: USA

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Streptomyces sp. NBC_00582

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Massilimicrobiota sp.


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_strain_identifiers: Alaska E43

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium botulinum;x__Clostridium botulinum E;x__Clostridium botulinum E3 str. Alaska E43


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan

ncbi_isolation_source: soil

ncbi_organism_name: Kineosporia sp. NBRC 101677

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_01_FULL_43_140


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W3a

ncbi_submitter: Chengdu University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Corynebacterium sp. KPL1996

ncbi_submitter: Broad Institute


ncbi_country: Denmark

ncbi_organism_name: Escherichia sp. MOD1-EC1915

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Right donor Bronchus

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_111 WWTPs influent

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine sediment

ncbi_organism_name: Vibrio sp. HA2012

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Serratia quinivorans

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: University of Queensland


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_submitter: Hospital Virgen Macarena


ncbi_country: China: Shanghai

ncbi_submitter: China Aricultural University


ncbi_country: Thailand: Khon Kaen

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Treponema pedis/T M1

ncbi_isolation_source: gingiva

ncbi_organism_name: Treponema pedis str. T M1

ncbi_strain_identifiers: T M1

ncbi_submitter: Swedish University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;f__Treponemataceae;g__Treponema;s__Treponema pedis;x__Treponema pedis str. T M1


ncbi_organism_name: Klebsiella sp. 86663

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: PA

ncbi_isolation_source: brain (Sus scrofa scrofa)

ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea

ncbi_isolation_source: black sand beach

ncbi_organism_name: Nocardioides furvisabuli

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Japan:Hokkaido; Akkeshi; Lake Akkeshi

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfoluna limicola

ncbi_submitter: Hokkaido University


ncbi_country: Iceland: Skaltholt

ncbi_organism_name: Geobacillus sp. CAMR12739

ncbi_submitter: Centre for Microbial Ecology and Genomics


ncbi_isolation_source: cheese (Beaufort)

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 6

ncbi_submitter: Brigham Young University


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nostocoides sp.

ncbi_submitter: CAU


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-47B

ncbi_submitter: Arkin Lab


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Campylobacter curvus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Spain: Santander

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: French Polynesia: Moorea

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: USA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of California at Davis


ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Australia: Brisbane

ncbi_organism_name: Collinsella sp.

ncbi_submitter: The University of Queensland


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Nantahala National Forest; NC

ncbi_isolation_source: campfire topsoil

ncbi_organism_name: Paenibacillus athensensis

ncbi_submitter: University of Georgia


ncbi_organism_name: Nocardioides hankookensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Ruijin Hospital


ncbi_country: Spain

ncbi_isolation_source: cloaca from white stork nestling

ncbi_submitter: University of La Rioja


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Klebsiella africana

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: YUNNAN ACADEMY OF AGRICULTURAL SCIENCES


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Blautia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitratireductor aquimarinus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Agathobacter rectalis


ncbi_country: Canada: Alberta

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Research Center of Biotechnology


ncbi_country: USA: California; Middletown

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Segatella hominis


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 18

ncbi_submitter: Chung-Ang University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR30612

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: IZSLER


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Woeseia sp.

ncbi_submitter: Centro de Astrobiologia


gtdb_type_species_of_genus: t

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Phycisphaera mikurensis NBRC 102666

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__Phycisphaeraceae;g__Phycisphaera;s__Phycisphaera mikurensis;x__Phycisphaera mikurensis NBRC 102666


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Mahidol University


ncbi_isolation_source: feces; 4 single-cells amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France

ncbi_submitter: L'Oreal


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Nanchang

ncbi_isolation_source: wound secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University Health Science Center


ncbi_isolation_source: jejunum

ncbi_organism_name: Brevibacterium senegalense

ncbi_submitter: Quadram Institutte


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Rwanda: Kicukiro

ncbi_isolation_source: blood

ncbi_submitter: University of Rwanda

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Escherichia coli BIDMC 15

ncbi_strain_identifiers: BIDMC 15

ncbi_submitter: Broad Institute


ncbi_country: Chile: Concepcion

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad de Concepcion


ncbi_assembly_name: IMG-taxon 2684623028 annotated assembly

ncbi_organism_name: Chryseobacterium oranimense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Indiana; Moores Creek IURTP

ncbi_isolation_source: nematodes

ncbi_organism_name: Xenorhabdus bovienii

ncbi_strain_identifiers: texanum MC_11

ncbi_submitter: Xenorhabdus project-Indiana University


ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Aquicultor secundus

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Candidatus Aquicultoria;o__Candidatus Aquicultorales;f__Candidatus Aquicultoraceae;g__Candidatus Aquicultor;s__Candidatus Aquicultor secundus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Aquicultoria;o__Candidatus Aquicultorales;f__Candidatus Aquicultoraceae;g__Candidatus Aquicultor;s__Candidatus Aquicultor secundus


ncbi_organism_name: cyanobacterium PCC 7702

ncbi_submitter: JGI


ncbi_isolation_source: no data

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Streptomyces sp. SID4934

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Berkeley; CA; marina

ncbi_isolation_source: enrichment from estuary sediment

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Luzhou

ncbi_isolation_source: hospital sewage

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Streptomyces sp. NBC_00024

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Pelotomaculum sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: USA: Multnomah County; Oregon

ncbi_isolation_source: trachea

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: ORABMayT

ncbi_submitter: JCVI


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus panisapium


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Norway

ncbi_isolation_source: Pea protien pellets

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Peptoniphilus sp.


ncbi_organism_name: Mesoaciditogaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Sichuan University


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Jorgensenbacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Joergenseniibacteriota;x__unclassified Candidatus Jorgensenbacteria;s__Candidatus Jorgensenbacteria bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: bioMerieux


ncbi_country: USA: PA

ncbi_isolation_source: avian lung (Gallus gallus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Tateyamaria sp.

ncbi_submitter: University of Southern California


ncbi_country: Belgium

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Acetobacter malorum

ncbi_submitter: Ghent University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Escherichia sp. WS575

ncbi_submitter: Center for Disease Control and Prevention


ncbi_country: USA: Franklin Co.; Ohio

ncbi_organism_name: Rickettsia bellii OSU 85-389

ncbi_submitter: University of Iowa


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Agrobacterium rubi

ncbi_submitter: Oregon State University


ncbi_country: Japan:Ehime; Ainan; Uwa sea

ncbi_isolation_source: seawater

ncbi_organism_name: Litoreibacter roseus

ncbi_submitter: Photosynthetic Microbial Consortia, Biological science, Tokyo Metropolitan University


ncbi_country: India: Jetpur; Gujarat

ncbi_isolation_source: Textile industry effluent

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Gujarat Biotechnology Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Xanthomonas citri pv. viticola

ncbi_strain_identifiers: LMG 966

ncbi_submitter: CSIR-Institute of Microbial Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. viticola


ncbi_organism_name: Salinimicrobium sediminis

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: California Institute of Technology


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Rhizobium sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella sp. SJTUF15603

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Kosakonia sp. YIM B13588

ncbi_submitter: Yunnan University


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; pilot scale (60m3) reactor for the removal of ammonium from the effluent from a primary clarifier of a full-scale WWTP.

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Agroscope


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Microbacterium aurantiacum

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA: Georgia

ncbi_isolation_source: xylem

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Auburn University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_isolation_source: root from Bare Fallow land

ncbi_organism_name: Pseudomonas sp. BF-RE-28

ncbi_submitter: Rothamsted Research


ncbi_organism_name: Veillonella caviae

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bifidobacterium thermophilum

ncbi_submitter: Veterinary Research Institute


ncbi_country: China: Shandong

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Italy

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Zurich


ncbi_isolation_source: retail store

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pretoria


ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Macinerneyibacteriota;c__Candidatus Mcinerneyibacteria;o__Candidatus Mcinerneyibacteriales;x__unclassified Candidatus Mcinerneyibacteriales;s__Candidatus Mcinerneyibacteriales bacterium


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Agrobacterium sp.


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: UC San Diego


ncbi_country: Canada: Sarnia oil refinery

ncbi_isolation_source: Carbon granules from GAC filter

ncbi_organism_name: Candidatus Manganitrophus sp.

ncbi_submitter: Western University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;g__Candidatus Manganitrophus;x__unclassified Candidatus Manganitrophus;s__Candidatus Manganitrophus sp.


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Brucellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Kribbella sp. NPDC051718

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: University of Queensland


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC056309


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Pedobacter agri

ncbi_submitter: Branch for Bioresources of the Fraunhofer IME


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_submitter: Shahjalal University of Science and Technology


ncbi_country: Brazil: Belem

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan

ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_country: USA: MD

ncbi_isolation_source: Commercial dietary supplements

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: USFDA


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: AAFC


ncbi_assembly_name: PromicroPop

ncbi_organism_name: Promicromonospora sp. Populi

ncbi_strain_identifiers: Populi

ncbi_submitter: Oak Ridge National Laboratory


ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil:Sao Paulo

ncbi_isolation_source: Urine

ncbi_organism_name: Leptospira santarosai serovar Guaricura

ncbi_submitter: School of Veterinary Medicine and Animal Science / University of Sao Paulo


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0051

ncbi_submitter: Broad Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Argentina: Bariloche; Rio negro Province

ncbi_organism_name: Brucella ovis IntaBari-2006-46-348


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_submitter: University of Copenhagen


ncbi_assembly_name: Salmonella enterica CVM N48706 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Ground Beef

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Jinhua

ncbi_isolation_source: excrement

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Jinhua Central Hospital


ncbi_isolation_source: bone

ncbi_organism_name: Enterococcus sp. HMSC34G12

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Water

ncbi_submitter: MASSEY UNIVERSITY


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University School of Medicine


ncbi_country: Belgium

ncbi_isolation_source: Beer

ncbi_organism_name: Gluconobacter vitians

ncbi_submitter: Ghent University


ncbi_country: United Kingdom

ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_submitter: LSHTM


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_country: United Kingdom: Dundee; Scotland

ncbi_isolation_source: child cutaneous anthrax

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China

ncbi_isolation_source: Articulation

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Nocardiopsis sp. NPDC057823

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Polyangiales bacterium


ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_organism_name: Gallibacterium trehalosifermentans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Escherichia sp. WS500

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Rickettsia endosymbiont of Thecocarcelia acutangulata

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Monoglobus pectinilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Wolbachia sp.

ncbi_submitter: Faculty of Science, University of South Bohemia


ncbi_organism_name: Streptomyces sp. NPDC008313


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-1341

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Fructilactobacillus frigidiflavus

ncbi_submitter: University of Alberta


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: candidate division WS1 bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__candidate division WS1;x__unclassified candidate division WS1;s__candidate division WS1 bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudomonas nitroreducens


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Seawater (1m depth)

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_country: China: Guangdong

ncbi_isolation_source: intestine from piglets

ncbi_organism_name: Bacillus sp. wens01

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. wens01


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Gemmatimonadales bacterium UBA6960

ncbi_submitter: concordia university


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Seleniivibrio woodruffii

ncbi_submitter: Fudan University


ncbi_country: India: Vellore

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Christian Medical College


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: cold spring

ncbi_organism_name: Paenibacillus wulumuqiensis

ncbi_submitter: Nanjing Tech University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Pectobacterium carotovorum subsp. carotovorum

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: anal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Russia: Moscow

ncbi_isolation_source: aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SRCAMB


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus sp. Leaf75

ncbi_submitter: Max Planck Institute for Plant Breeding Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Leaf75


ncbi_organism_name: Methylobacterium aquaticum

ncbi_submitter: Okayama University


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Zhejiang

ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Escherichia coli

ncbi_submitter: Loyola University Chicago


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Hungary

ncbi_isolation_source: eye after gunshot wound

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: PA

ncbi_isolation_source: avian liver (Meleagris sp.)

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: BGI


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: East China Normal University


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: meat(head)

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Mexico

ncbi_isolation_source: feces (Canis latran)


ncbi_isolation_source: feaces

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Oxford


ncbi_country: Antarctica: Mackay Glacier regions; Mount Seuss

ncbi_isolation_source: mineral soil

ncbi_organism_name: Methylibium sp.

ncbi_submitter: Monash University


ncbi_country: Zambia: Luanshya

ncbi_isolation_source: Acid mine drainage

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_strain_identifiers: ZBY

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Xylanibacter rodentium


ncbi_country: China

ncbi_organism_name: Enterococcus gilvus

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Foggia


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-176

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Methyloversatilis discipulorum

ncbi_strain_identifiers: new MAG-176

ncbi_submitter: Micoorganism


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium NC2008

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Roseburia sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Research In Tuberculosis


ncbi_isolation_source: Caecum

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Kenya

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Nairobi


ncbi_organism_name: Streptococcus pneumoniae SPN994038

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIFESP


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Kuwait: Kabd

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: EMG


ncbi_country: USA: California; Alameda County


ncbi_organism_name: Sphingomonas sp. CFBP9019

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Beijing Genome Institute


ncbi_isolation_source: Mucosal surface Transverse Colon

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UNC-Chapel Hill


ncbi_country: Germany

ncbi_isolation_source: preen gland

ncbi_organism_name: Kocuria sp. 257

ncbi_submitter: Institute of Pharmacy and Molecular Biotechnology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Afghanistan

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The University of Sydney


ncbi_country: USA: Georgia

ncbi_isolation_source: retail store

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: University of Georgia


ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterobacter kobei


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7223

ncbi_submitter: University of Queensland


ncbi_country: USA: IA

ncbi_isolation_source: root

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Klebsiella quasivariicola

ncbi_submitter: WTSI


ncbi_country: Canada: Labrador Sea

ncbi_isolation_source: Microcosm inoculated with Labrador Shelf sediment and amended with petroleum hydrocarbons

ncbi_organism_name: Oceanihabitans sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Candidatus Pelagadaptatus aseana

ncbi_submitter: National University of Singapore


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Parabacteroides sp.


ncbi_isolation_source: pig farms

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG355

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Czech Republic

ncbi_isolation_source: spleen

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp. AM28-41

ncbi_submitter: BGI


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Massilibacteroides vaginae

ncbi_submitter: URMITE


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Municipal Center for Disease Control & Prevention


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_organism_name: Campylobacter coli

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Sutterella sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Russia: Trekhtsvetnoe Lake; Kandalaksha Bay

ncbi_isolation_source: water chemocline zone

ncbi_organism_name: Chlorobium phaeovibrioides

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_organism_name: Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden: coastal region near Tjarno

ncbi_isolation_source: Sea-surface microlayer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Brucella suis 04-0115

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptococcus suis YS16

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Streptomyces murinus

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Zhejiang

ncbi_isolation_source: lung

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Elizabethkingia anophelis

ncbi_strain_identifiers: YML

ncbi_submitter: Enze Hospital


ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: SponGES


ncbi_organism_name: Candidatus Pelagibacter sp. HIMB1493

ncbi_submitter: Hawaii Institute of Marine Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__unclassified Candidatus Pelagibacter;s__Candidatus Pelagibacter sp. HIMB1493


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces aquilus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JiLin Agricultural Science and Technology University


ncbi_organism_name: Zoogloea sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Flavipsychrobacter sp.


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-92

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_strain_identifiers: new MAG-92

ncbi_submitter: Micoorganism


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.5 m monimolimnion layer of meromictic lake

ncbi_submitter: Academia Sinica


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: USA: SD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolate: Human

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Human

ncbi_submitter: KING ABDULAZIZ UNIVERSITY


ncbi_organism_name: Ligilactobacillus aviarius

ncbi_submitter: UNIVERSITY HOHENHEIM


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_strain_identifiers: ILEF 138 MK

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Durham


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA768

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Jeju Island

ncbi_organism_name: Hymenobacter baengnokdamensis

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_country: USA: CA

ncbi_isolation_source: white peach

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Pseudomonas lijiangensis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: Switzerland: Epilimnion Lake Zurich

ncbi_isolation_source: Surface water from Lake Zurich

ncbi_organism_name: Asticcacaulis sp. ZE23SCel15

ncbi_submitter: University of Zurich


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 412

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: SNUC 2834

ncbi_submitter: University of Calgary


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_submitter: Moscow


ncbi_country: China: Guangxi

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: China: Taizhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Bern


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: CLUE-TERRA