ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Antarctica: South Orkney Islands

ncbi_genome_representation: full

ncbi_isolation_source: oral swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


gtdb_representative: t

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: USA:Urbana; IL

ncbi_isolation_source: Laboratory

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_strain_identifiers: acroa

ncbi_submitter: NHGRI/NIH


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Paraburkholderia silvatlantica

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Bermanella sp.

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: fermentation

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptococcus intermedius B196

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus anginosus group;s__Streptococcus intermedius;x__Streptococcus intermedius B196


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Microbacterium commune

ncbi_refseq_category: reference genome

ncbi_submitter: Quadram Institutte

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Adlercreutzia caecimuris


ncbi_isolation_source: Throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T39093

ncbi_submitter: Broad Institute


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC050161

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia:Russian Federation; Space Station Mir

ncbi_isolation_source: air in Russian space station Mir

ncbi_organism_name: Sphingomonas yabuuchiae

ncbi_submitter: Indigo Agriculture


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus sp. HMSC063H10

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Central venous access devices

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: Canada: Quebec

ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_organism_name: Mycetocola sp.

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Goias

ncbi_isolation_source: Cerrado soil

ncbi_organism_name: Streptomyces sioyaensis

ncbi_submitter: Federal University of Mato Grosso


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_isolation_source: Wound swab (groin L)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Turicibacter sp.


ncbi_organism_name: Aliifodinibius sp. S!AR15-10

ncbi_submitter: University of Sevilla, Spain


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: skin soft tissue

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Kenya Medical Research Institute - United States Army Medical Research Directorate Kenya

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Nebraska

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UNMC


ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: Gungdong

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 50595

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_assembly_level: Chromosome

ncbi_country: Germany

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Zhangshu City; Jiangxi Province


ncbi_isolation_source: Braised chicken

ncbi_organism_name: Pantoea agglomerans


ncbi_country: USA

ncbi_isolation_source: plaque-purified isolate from stock culture

ncbi_organism_name: Chlamydia muridarum str. Nigg

ncbi_submitter: University of North Carolina at Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;s__Chlamydia muridarum;x__Chlamydia muridarum str. Nigg


ncbi_country: Belgium

ncbi_isolation_source: fecal incubation

ncbi_organism_name: Evtepia sp.

ncbi_submitter: United States Department of Agriculture - ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1482 from squamous cell carcinomas patient MST013

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Veillonellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Bangladesh

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: Sweden

ncbi_isolation_source: CSF


ncbi_country: USA: Pennsylvania

ncbi_strain_identifiers: ICE 886

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_organism_name: Escherichia coli O104:H4 str. 11-4404

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. 11-4404


ncbi_country: Morocco: Taliouine; Taznakht

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Variovorax sp. S12S4

ncbi_submitter: EMBM Laboratory, Faculty of Sciences, Mohammed V University in Rabat


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces of yak

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: Right guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: Bielefeld University


ncbi_strain_identifiers: FMT3 ESBL

ncbi_submitter: Emory University


ncbi_organism_name: Shouchella clausii

ncbi_submitter: EDCBioSynergy


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Burkholderia sp. OKR4-1

ncbi_submitter: Kyonggi university


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Christian Medical College


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: Metropolitan Autonomous University, Campus Lerma


ncbi_organism_name: Serratia bockelmannii

ncbi_submitter: McMaster University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Australia: Northern Territory; North Australian Desert

ncbi_isolate: NAD bin4

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NAD bin4

ncbi_submitter: Monash University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Variovorax sp. LjRoot84

ncbi_submitter: Aarhus University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_isolation_source: tomato fruit

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: The Ohio State University


ncbi_country: USA: GA

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin54

ncbi_strain_identifiers: MOJ bin54


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Snodgrassella communis

ncbi_submitter: University of Texas at Austin


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R26(2017)

ncbi_submitter: University of Sao Paulo


ncbi_country: Japan: Kagoshima

ncbi_isolation_source: water

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Research Center for Bioinformatics and Biosciences, National Research Institute of Fisheries Science, Japan Fisheries Research and Education Agency


ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus SA40


ncbi_organism_name: Helicobacter hepaticus


ncbi_organism_name: Staphylococcus coagulans

ncbi_strain_identifiers: NNSsch 2520

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_isolation_source: dairy

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University Colllege Cork


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0291

ncbi_submitter: Broad Institute


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pediococcus acidilactici

ncbi_strain_identifiers: LAMZ-Ka

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Alberta


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: South Korea: Geoje

ncbi_isolation_source: Sea water

ncbi_organism_name: Bacillus sp. KRF7

ncbi_submitter: Dong-Eui University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. KRF7


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Guangzhou

ncbi_isolation_source: ICU patient rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Birmingham


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Listeria sp. ILCC797

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: South Korea: Shrimp farms

ncbi_isolation_source: hepatopancreas

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Altingen; artesian well

ncbi_isolation_source: enrichment culture sampled from a low-nitrate anoxic artesian well

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_country: USA: Connecticut; Glastonbur

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Michigan State University


ncbi_organism_name: Demequina sp. NBRC 110051

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: Madhuca insignis leaf

ncbi_organism_name: Bacillus sp. ME78

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. ME78


ncbi_organism_name: Streptomyces sp. NPDC048192

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Taiyuan

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Microcoleus sp. TY_ISSM_2_bin.22

ncbi_submitter: CAU


ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-362

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Saprospiraceae bacterium

ncbi_strain_identifiers: new MAG-362

ncbi_submitter: Micoorganism


ncbi_country: USA: IA

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis;x__Salmonella enterica subsp. enterica serovar Infantis str. CVM 23697


ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: southwest university


ncbi_submitter: Shenzhen people's hospital


ncbi_country: Taiwan: Taichung

ncbi_isolation_source: rice shoot

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: National Chung Hsing University


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Philippines

ncbi_isolation_source: sputum

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. cannae

ncbi_strain_identifiers: NCPPB 4345

ncbi_submitter: University of Exeter


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_country: Brazil: Campinas

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Collinsella tanakaei YIT 12063

ncbi_submitter: Broad Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_name: Rumen uncultured genome RUG11179

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Parasutterella secunda

ncbi_submitter: Veterinary Research Institute


ncbi_country: Spain: Galicia

ncbi_isolation_source: Colon adenocarcinoma

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Biomedical research institute (INIBIC)


ncbi_country: India: Chikkanayakanahalli village and taluk; Tumkur district; Karnataka

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Madurai Kamaraj University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens LMG 5329

ncbi_submitter: Centre of Microbial and Plant Genetics (CMPG), University of Leuven

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas fluorescens;x__Pseudomonas fluorescens LMG 5329


ncbi_country: Germany: Hannover

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Blockley


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: VA

ncbi_isolation_source: vagina

ncbi_organism_name: Finegoldia magna

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Guangxi

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Shaanxi

ncbi_isolation_source: Cured beef

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Karolinska Institutet


ncbi_isolation_source: goat

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Colombia

ncbi_isolation_source: blood

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: Paraburkholderia sp. J69-1

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: cervix

ncbi_submitter: Children's Mercy Kansas City


ncbi_country: Canada: Quebec

ncbi_isolation_source: feces

ncbi_submitter: Government of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Tracheal discharge

ncbi_submitter: Universidad Central del Ecuador


ncbi_assembly_name: Rumen uncultured genome RUG13335

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Canada

ncbi_isolation_source: forest soil

ncbi_organism_name: Bradyrhizobium sp. LTSP885

ncbi_submitter: University of British Columbia


ncbi_assembly_name: Rumen uncultured genome RUG13616


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Peru

ncbi_isolation_source: Sf9 cell culture media

ncbi_organism_name: Sphingomonas sp. FARSPH

ncbi_strain_identifiers: FARSPH

ncbi_submitter: FARVET S.A.C.


ncbi_submitter: Jeonbuk National University


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_isolation_source: feces from children

ncbi_organism_name: Lacticaseibacillus rhamnosus GG

ncbi_submitter: Northeast Agricultural University


ncbi_assembly_name: freshwater MAG --- D14_bin-0225

ncbi_isolation_source: pond

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Evtepia excrementipullorum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;s__Candidatus Evtepia excrementipullorum


ncbi_organism_name: Treponema sp.


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


gtdb_type_species_of_genus: t

ncbi_organism_name: Flavisericum labens

ncbi_submitter: Xiamen University


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: sheep gut metagenome


ncbi_country: Norway

ncbi_isolation_source: hospital

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_strain_identifiers: CFBP 498

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Plantibacter sp. Leaf1

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: bioreactor

ncbi_organism_name: Arcobacter sp. UBA1348


ncbi_isolation_source: environment

ncbi_submitter: URMITE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Haneayah

ncbi_organism_name: Nostochopsis sp.

ncbi_strain_identifiers: Haneayah

ncbi_submitter: SUNY College of Environmental Science and Forestry


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acidiphilium iwatense

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: activated sludge

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Shanghai Jiaotong University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: New Zealand

ncbi_isolation_source: salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: SPN XDR SMC1710-32

ncbi_submitter: Asia Pacific Foundation for Infectious Diseases


ncbi_organism_name: Synechococcales cyanobacterium

ncbi_submitter: EPFL


ncbi_country: Belgium

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas yamanorum

ncbi_submitter: Wageningen University & Research


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: New Caledonia

ncbi_isolation_source: soil

ncbi_organism_name: Leptospira brenneri

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Dazhou; Sichuan

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Shewanella sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: Pakistan

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Pseudodesulfovibrio sp.

ncbi_submitter: ProBone


ncbi_country: USA:TX; Galveston; East Beach

ncbi_organism_name: Bacillus albus

ncbi_submitter: Willamette University


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDY8P130P

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Staphylococcus sp. GDY8P57P


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Roseovarius sp.

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: wound fluid from a diabetic patient

ncbi_organism_name: Staphylococcus aureus MUF168

ncbi_submitter: School of Life Sciences, Manipal University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: Japan

ncbi_organism_name: Sulfurovum lithotrophicum

ncbi_strain_identifiers: ATCC BAA-797

ncbi_submitter: KRIBB


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13808

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Hawaii; Kaneohe Bay

ncbi_isolation_source: coral

ncbi_organism_name: Pseudoalteromonas obscura

ncbi_submitter: Southern Oregon University


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: United Kingdom

ncbi_isolation_source: Duck

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: India: Vellore

ncbi_isolation_source: Fluid

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Pseudovibrio sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Pharygitis

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shizuishan

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: feces; evolved day8-1

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Israel: Haifa

ncbi_isolate: EnvH

ncbi_isolation_source: asphalt

ncbi_organism_name: Candidatus Pantoea haifensis

ncbi_strain_identifiers: EnvH

ncbi_submitter: Israel Institute for Biological Research


ncbi_country: Malaysia: Segamat

ncbi_isolation_source: feces

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Monash University Malaysia


ncbi_country: Canada: British Columbia; Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: McGill University and Genome Quebec Innovation Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA: VA

ncbi_isolation_source: other

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Hanyang University Hospital


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Oxford


ncbi_isolation_source: anaerobic sludge

ncbi_organism_name: Clostridium butyricum CWBI1009

ncbi_submitter: SCK-CEN


ncbi_isolation_source: Throat


ncbi_organism_name: Clostridium perfringens E

ncbi_submitter: Bioinformatics Unit, Research Center for Advanced Analysis, Core Technology Research Headquarters, National Agriculture and Food Research Organization


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Germany: Erlangen

ncbi_isolation_source: perianal skin [UBERON:0012336]

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universitaetsklinikum Erlangen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_organism_name: Enterococcus faecalis EnGen0205

ncbi_submitter: Broad Institute


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_12_43_8


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Nodularia sp. (in: cyanobacteria)

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;x__unclassified Nodularia (in: cyanobacteria);s__Nodularia sp. (in: cyanobacteria)


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. KL114A

ncbi_submitter: Tecnologico de Monterrey


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC050842

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Vibrio cholerae HC-33A2

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Greece: Serifos; South Aegean

ncbi_organism_name: Rhizobium sp. WSM1274

ncbi_submitter: Murdoch University


ncbi_organism_name: Mycobacterium tuberculosis CAS/NITR204

ncbi_submitter: National Institute of Tuberculosis Research, Chennai, India

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis CAS;x__Mycobacterium tuberculosis CAS/NITR204


ncbi_country: USA: Laguna Beach; California

ncbi_organism_name: Campylobacter pinnipediorum subsp. pinnipediorum

ncbi_submitter: Utrecht University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Central Florida


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Molecular Biology NAS Armenia


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Sphingosinicella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Ja1_bin-0483

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Department of Veterinary Microbiology Kamdhenu University Navsari


ncbi_country: Denmark: Lyngby; Small hill with plants just outside CFB (DTU campus). Plants were all very dark green. Soil clearly had lots of nutrients

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00102

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnospiraceae bacterium UBA7058

ncbi_submitter: University of Queensland


ncbi_organism_name: Cereibacter sphaeroides

ncbi_strain_identifiers: strain 2.4.1

ncbi_submitter: Universal Sequencing Corporation


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Korea University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium RIFCSPLOWO2_12_FULL_45_10


ncbi_country: South Korea: Suwon

ncbi_organism_name: Paraburkholderia antibiotica

ncbi_submitter: Kyonggi University


ncbi_assembly_name: freshwater MAG --- MJ-2014-D5_bin-164

ncbi_submitter: BILS


ncbi_country: Turkey

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Streptococcus oralis subsp. dentisani

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Japan

ncbi_isolation_source: feces; 1 single-cell amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: bioBiome, Inc.


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Beltsville; Maryland

ncbi_organism_name: Mesoplasma coleopterae

ncbi_strain_identifiers: BARC 781

ncbi_submitter: Universite de Sherbrooke


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Desulfomonilia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Petralouisia muris

ncbi_submitter: University of Toronto


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Caecum


ncbi_country: USA

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: Penis Swab

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_organism_name: Pseudarthrobacter sp. IC2-21

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: EMG


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG14271

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Enterococcus faecalis 02-MB-BW-10

ncbi_submitter: The Genome Institute


ncbi_country: USA: MO

ncbi_isolation_source: organ

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Albany


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA6781

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: NNEc 2173

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Sorbonne University


ncbi_isolation_source: acidic water

ncbi_organism_name: Acidithiobacillus ferridurans

ncbi_submitter: Tokyo University of Pharmacy and Life Sciences


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Northumbria University


ncbi_submitter: Zhejiang university


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Peptococcaceae;x__Peptococcaceae incertae sedis;g__Candidatus Avidehalobacter;s__Candidatus Avidehalobacter gallistercoris


ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Actinobacillus;s__Actinobacillus pleuropneumoniae;x__Actinobacillus pleuropneumoniae serovar 2;x__Actinobacillus pleuropneumoniae serovar 2 str. S1536


ncbi_country: Germany

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: CAU Kiel


ncbi_country: China: Henan

ncbi_isolation_source: pus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiaozuo people's hospital


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: TCFB 0813

ncbi_submitter: The University of Queensland


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: SponGES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas vlassakiae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: uncultured Myxococcota bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__environmental samples;s__uncultured Myxococcota bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_isolation_source: retail deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp2 AA93

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp2 AA93

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Enterococcus sp. C16

ncbi_submitter: Northwest A & F University


ncbi_organism_name: Crossiella equi

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Alcanivorax sp. UBA3989

ncbi_submitter: University of Queensland


ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_country: Chile

ncbi_isolation_source: fish

ncbi_organism_name: Aeromonas bestiarum

ncbi_submitter: Universidad de Santiago de Chile


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: feces

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Czech Republic: Ortvinovice

ncbi_isolation_source: mud of a pond bottom

ncbi_organism_name: Acinetobacter sp. ANC 4177

ncbi_submitter: National Institute of Public Health


ncbi_organism_name: Empedobacter brevis


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: caecum

ncbi_organism_name: Tyzzerella sp. An114

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Kingella denitrificans


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Looe Key; Florida

ncbi_isolate: SBLK

ncbi_isolation_source: cyanobacterial mat on coral surface

ncbi_organism_name: Cyanobacteria bacterium SBLK

ncbi_strain_identifiers: SBLK

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium SBLK


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: King's College London


ncbi_isolation_source: lake water

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: Raw Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: INNER MONGOLIA MINZU UNIVERSITY


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Streptosporangium sp. NPDC006007


ncbi_organism_name: Escherichia coli

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Oleispira sp.

ncbi_submitter: University of Southern California


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Algeria

ncbi_isolation_source: nasal carriage

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: IHU


ncbi_country: USA: NC

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: Northeastern University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Belgium

ncbi_isolation_source: laboratory strain

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Actinophytocola sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_country: Tunisia: Sousse

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: gutless worms collected in the Mediterranean Sea; off the coast of Capo di

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Olavius algarvensis Gamma 3 endosymbiont


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Metamycoplasma sp.


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Aeromonas bivalvium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Syntrophaceae bacterium UBA2251

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Japan:Chiba; Narashino; Mimomi Park

ncbi_isolation_source: soil

ncbi_organism_name: Nostoc sp. NIES-3756

ncbi_submitter: Toyohashi University of Technology


ncbi_organism_name: Bradyrhizobium viridifuturi


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Terrimicrobium sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungbacteria bacterium RIFCSPHIGHO2_02_FULL_41_12b


ncbi_organism_name: Nocardia sp. NPDC004860

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Broad Institute


ncbi_country: Australia: Queensland

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: Germany

ncbi_isolation_source: spoiled beer

ncbi_submitter: Technische Universitaet Muenchen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Fructilactobacillus;s__Fructilactobacillus lindneri;x__Fructilactobacillus lindneri DSM 20690 = JCM 11027


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: USA: California

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Flavobacterium plurextorum

ncbi_submitter: Universite Laval


ncbi_organism_name: Succinimonas sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Indian Ocean: Indian Monsoon Gyres Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Denmark: Viborg

ncbi_isolation_source: activated sludge from Vibo_18-Q3-R45-57

ncbi_organism_name: Ideonella sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured delta proteobacterium


ncbi_organism_name: Bacillota bacterium LCP21S3_D9

ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Bacillota bacterium LCP21S3_D9


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BiOSSE


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;x__environmental samples;s__uncultured Rhabdochlamydiaceae bacterium


ncbi_organism_name: Mucilaginibacter galii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Streptomyces sp. NPDC127051

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardioides plantarum


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Actinobacteria bacterium UBA2519

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Edmonton

ncbi_isolation_source: colon

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: University of Alberta


ncbi_isolation_source: Environmental; maize

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: EMG


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Zymomonas mobilis subsp. mobilis

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Wayne State University


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_country: New Zealand

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_country: China: Beijing

ncbi_isolation_source: food

ncbi_submitter: China CDC


ncbi_country: USA: Maine

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Castellaniella sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Tang lab


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 279

ncbi_submitter: SC


ncbi_country: France

ncbi_organism_name: Xanthomonas phaseoli pv. dieffenbachiae

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID3915


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: feces

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2737

ncbi_submitter: University of Queensland


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Halanaerobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan: Osaka

ncbi_organism_name: Segatella copri

ncbi_submitter: Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Peru


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV180

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: activated sludge sample

ncbi_organism_name: Solidesulfovibrio aerotolerans

ncbi_submitter: Tomsk State University


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: SC


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_country: France: Normandy

ncbi_isolation_source: bronchial aspiration

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 08-01059

ncbi_submitter: Broad Institute


ncbi_country: USA: Greene County; Ohio

ncbi_isolation_source: groundwater well

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium Greene1014_47


ncbi_isolation_source: Minced meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: ocean

ncbi_organism_name: Prochlorococcus marinus XMU1412

ncbi_submitter: China University of Geosciences


ncbi_country: Reunion

ncbi_isolation_source: Rectal

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Acutalibacter muris

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_submitter: Oregon State University


ncbi_submitter: China Agricultural University


ncbi_country: USA: KS

ncbi_isolation_source: bovine liver abscess

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: Lake Salubria; Bath; New York

ncbi_isolation_source: surface water of freshwater lake during cyanobacterial bloom

ncbi_organism_name: Pseudanabaena sp. Salubria-1

ncbi_submitter: University of Tennessee


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Intestinimonas butyriciproducens


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bariatricus sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Streptococcus pseudopneumoniae SK674

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_assembly_name: Rumen uncultured genome RUG10944

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Terracoccus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle background sediment; well D04 at 16ft depth

ncbi_organism_name: Actinobacteria bacterium RBG_16_64_13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium RBG_16_64_13


ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: University of Exeter


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B065;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus pantheris;x__Lacticaseibacillus pantheris DSM 15945 = JCM 12539 = NBRC 106106


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC101194

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. SKLX119042

ncbi_submitter: Zhejiang university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Puyang Oil Field General Hospital


ncbi_organism_name: Tannerella sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_submitter: University of Tehran


ncbi_country: USA: International Space Station

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_isolation_source: long-term freshwater anammox column reactor

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Environmental Preservation Engineering, Civil and Environmental Engineering, Hiroshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 414

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 2913

ncbi_submitter: University of Calgary


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus LAMC0024

ncbi_submitter: Broad Institute


ncbi_country: China: Fujian; Zijin

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Mexico

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of California at Davis


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Cypionkella sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea: Suwan

ncbi_isolation_source: Cow dung

ncbi_organism_name: Azospirillum ramasamyi

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 2; 20cm depth; 2 days after second rain event (91mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__unclassified Gemmatimonadota;s__Gemmatimonadetes bacterium 13_2_20CM_2_65_7


ncbi_country: Kazakhstan

ncbi_organism_name: Yersinia pestis subsp. pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Yersinia;x__Yersinia pseudotuberculosis complex;s__Yersinia pestis;sb__Yersinia pestis subsp. pestis


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Hegang city; Heilongjiang province

ncbi_isolation_source: rhizospheric soil of Korean pine

ncbi_organism_name: Phyllobacterium sp. SYP-B3895

ncbi_submitter: Shenyang Pharmaceutical University


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Christensenella sp.


ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: European Bioinformatics Institute


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPLOWO2_02_FULL_40_13b


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Nigeria: Osun State; Ede

ncbi_organism_name: Enterobacter cloacae complex sp. OE43NF

ncbi_submitter: African Centre of Excellence for Genomics of Infectious Diseases (ACEGID), Redeemer's University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. OE43NF


ncbi_organism_name: Oliverpabstia sp.


ncbi_country: Australia: Gippsland Lakes

ncbi_isolation_source: freshwater

ncbi_organism_name: Nodularia spumigena CS-588/02A10

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: China

ncbi_isolation_source: liver of intussusception fish

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Guizhou Academy of Agricultural Sciences


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:91

ncbi_submitter: DTU


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Streptomyces sp. Root369

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: South Korea

ncbi_isolation_source: processed fecal extract provided by a qualified healthy Korean fecal microbiota transplantation donor

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Microcoleus sp. C2D2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Broad Institute


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolate: metabat2_coassembly_bwa.607 MAG

ncbi_organism_name: uncultured Gordonibacter sp.

ncbi_strain_identifiers: metabat2_coassembly_bwa.607 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_country: China:Tianmu Mountain

ncbi_isolation_source: bamboo forest soil

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: CGMCC 11640

ncbi_submitter: ZHEJIANG A&F UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Rhodococcus ruber

ncbi_strain_identifiers: IEGM 1263

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_isolation_source: colonic content of eviscerated cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Meat Animal Research Center


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides ovatus


ncbi_country: Turkey: Adana

ncbi_isolation_source: Orchard

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China: HeNan

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: wound r leg

ncbi_organism_name: Streptococcus sp. HMSC062H02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: The University of Texas at Dallas


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas alkylphenolica

ncbi_submitter: ibs


ncbi_organism_name: Paenibacillus melissococcoides

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus infantarius

ncbi_submitter: BGI-Shenzhen


ncbi_country: Antarctica

ncbi_organism_name: Streptomyces sp. SPB4

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis School of Medicine