ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: DE

ncbi_genome_representation: full

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Serratia grimesii

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St. Louis


ncbi_assembly_level: Scaffold

ncbi_country: Australia: Brisbane

ncbi_isolation_source: Oropharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_country: Ireland

ncbi_isolation_source: Human (feces)

ncbi_submitter: ERI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 03.O.05


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae O1 str. AG-8040

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. AG-8040


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Streptomyces sp. NBC_01589

ncbi_submitter: Technical University of Denmark


ncbi_genome_category: derived from metagenome

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


gtdb_representative: t

ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Reyranella sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: King's College London


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotella sp. UBA4356

ncbi_submitter: University of Queensland


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__candidate division Zixibacteria bacterium 4484_95


ncbi_country: China

ncbi_isolation_source: feces from chicken farm

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Sichuan University


ncbi_organism_name: Curtobacterium pusillum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_country: Sri Lanka: Jaffna

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Candidatus Limousia pullorum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Limousia;s__Candidatus Limousia pullorum


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1717

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptomyces sp. NPDC002870

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudoalteromonas sp. Of5H-6

ncbi_submitter: Meyer Microbes Lab


ncbi_country: South Korea: Suwon

ncbi_organism_name: Burkholderia glumae

ncbi_submitter: Seoul National University


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2636416071 annotated assembly

ncbi_organism_name: Paenibacillus sp. cl6col

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_organism_name: Gemelliphila palaticanis

ncbi_submitter: King's College London


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Streptomyces sp. NPDC087305


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Salmonella sp. NW177

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. 741265044_PST

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_isolation_source: cold seep

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Shewanella algae

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: uncultured Aestuariivita sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_organism_name: Massilia sp. GCM10023247

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Zhejiang cancer Hospital


ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: China: Shanghai

ncbi_isolation_source: anammox sludge

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: East China of university of science and technolongy


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacillales bacterium UBA3835

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: Distal colon

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Escherichia coli 'BL21-Gold(DE3)pLysS AG'

ncbi_strain_identifiers: BL21-Gold(DE3)pLysS AG

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_organism_name: Vibrio parahaemolyticus Peru-466

ncbi_submitter: J Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus Peru-466


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Taizhou

ncbi_isolation_source: secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: China: Gungdong

ncbi_isolation_source: blood

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: bile

ncbi_organism_name: Enterobacter chengduensis

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_assembly_level: Chromosome

ncbi_country: India: Kerala

ncbi_organism_name: Aquabacter sp. L1I39

ncbi_submitter: National Institute for Interdisciplinary Science and Technology (CSIR)


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Geobacillus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22939;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Sulfuricella denitrificans

ncbi_submitter: Radboud University Nijmegen


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Argentina: Tandil

ncbi_isolation_source: Carcass

ncbi_submitter: Facultad de Ciencias Veterinarias


ncbi_country: China: Yellow Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Thalassospira sp. MCCC 1A02803

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_isolation_source: Sponge: Petrosia ficiformis

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Salmonella sp. NW507

ncbi_submitter: Sichuan University


ncbi_country: United Kingdom: Manchester

ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Cardiff University


ncbi_assembly_name: Rumen uncultured genome RUG13398

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Draconibacterium sediminis

ncbi_submitter: EMG


ncbi_organism_name: Alistipes inops

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


gtdb_type_species_of_genus: t

ncbi_organism_name: Alterisphingorhabdus coralli

ncbi_refseq_category: reference genome

ncbi_strain_identifiers: SCSIO 66989

ncbi_submitter: South China Sea Institute of Oceanology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alterisphingorhabdus (ex Yan et al. 2024);s__Alterisphingorhabdus coralli

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Sphingomonadales;f__Sphingomonadaceae;g__Alterisphingorhabdus (ex Yan et al. 2024);s__Alterisphingorhabdus coralli


ncbi_organism_name: Pseudolactococcus raffinolactis

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Japan: Gunma

ncbi_isolation_source: Oncorynchus masou

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium branchiophilum;x__Flavobacterium branchiophilum NBRC 15030 = ATCC 35035


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Legionella busanensis

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: France

ncbi_submitter: Universite Paris-Sud


ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V28_P6S34P95

ncbi_submitter: Instituto de ecologia


ncbi_country: USA

ncbi_isolation_source: fecal sample from healthy male

ncbi_organism_name: Bacteroides sp. 1_1_30

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides nordii

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterobacter cloacae complex sp. IR5476

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5476


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Balneola sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: East Carolina University


ncbi_country: United Kingdom: Greater London

ncbi_isolation_source: foreleg infected wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Oxford


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yonsei University College of Medicine


ncbi_strain_identifiers: Broiler parent114

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Anaerobutyricum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Succinivibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Brazil

ncbi_isolation_source: Chicken

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: Mouse faeces


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: Lumen Ileum

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UNC-Chapel Hill


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Zhejiang University


ncbi_country: China: Yunnan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Bacillus cereus group sp. MYBK195-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK195-1


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Escherichia coli

ncbi_submitter: UFMG


ncbi_country: Chile: Region del Maule; Estero Los Robles

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidade Federal de Sao Paulo


ncbi_country: Atlantic Ocean: North Atlantic

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. S186

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Alberta

ncbi_isolation_source: Enterococcosel

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Ningxia Medical University General Hospital


ncbi_country: South Korea: Seoul

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Korea National Insititute of Health


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Comenius University Science Park


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Sphingosinicella sp.


ncbi_country: South Korea

ncbi_isolation_source: Ginseng

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Shin's Lab., Kyungpook National University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_submitter: Jiangnan University


ncbi_organism_name: Roseburia inulinivorans


ncbi_submitter: Singapore General Hospital


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus group sp. BceL151

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL151


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolate: AOP31_B2_surf _bin _5

ncbi_organism_name: Halomonadaceae bacterium

ncbi_strain_identifiers: AOP31_B2_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Bizionia paragorgiae

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: derived from VB111

ncbi_submitter: Universite de Sherbrooke

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: Academia Sinica


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG048

ncbi_organism_name: uncultured Selenomonadales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: NanJing University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Xiamen University


ncbi_assembly_name: Ruminococcus phoceensis

ncbi_organism_name: Mediterraneibacter massiliensis

ncbi_submitter: URMITE


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: feces

ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: AAFC


ncbi_organism_name: Clostridium beijerinckii


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonas sp. BIGb0558


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Holdemanella sp.

ncbi_submitter: EMG


ncbi_country: India: Sundarban

ncbi_isolation_source: biofouled membrane

ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: CSIR-National Environmental Engineering Research Institute (NEERI)


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroides caecimuris


ncbi_organism_name: Mobiluncus holmesii

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_organism_name: Nesterenkonia cremea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: uncultured Erythrobacteraceae bacterium


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: fish

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: Switzerland

ncbi_organism_name: Campylobacter coli H8

ncbi_submitter: Cornell University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Germany: Gottingen

ncbi_isolation_source: algae-associated biofilm from a lab-scale bioreactor

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium GL2-53 LSPB_72


ncbi_isolation_source: clinical

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CVM_56-3991


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0954

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Scientific Centre for Family Health and Human Reproduction Problems


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium RIFCSPLOW2_12_42_9


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Northwest University


ncbi_assembly_name: freshwater MAG --- YR1_bin-0364

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolate: RCBGR

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: blood of a chinese 52-year-old male suffering from acute suppurative cholangitis

ncbi_organism_name: Enterococcus faecalis MA1

ncbi_submitter: The Affiliated Shenzhen Nanshan Hospital of Guangdong Medical College


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: The Institute of Chemical Biology and Fundamental Medicine SB RAS


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: EMG


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: The Lu'an People's Hospital


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Addis Ababa University


ncbi_organism_name: Bacillus sp. YIM B13607

ncbi_submitter: Yunnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YIM B13607


ncbi_organism_name: Bacillus sp. YBsi01

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. YBsi01


ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Brazil:Santa Catarina; Blumenau

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Geobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium sp. PDO1-076

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA

ncbi_isolation_source: cystic fibrosis sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: SC


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: tonsils

ncbi_organism_name: Streptococcus pyogenes


ncbi_assembly_name: Rumen uncultured genome RUG10539

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shandong

ncbi_isolation_source: marine macroalgae

ncbi_organism_name: Psychromonas sp. RZ22

ncbi_submitter: Shandong University Weihai Branch


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not provided

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: hide

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kansas State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Microbacterium arthrosphaerae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Bacillus cabrialesii subsp. cabrialesii

ncbi_submitter: Instituto Tecnologico de Sonora

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus cabrialesii;sb__Bacillus cabrialesii subsp. cabrialesii


ncbi_organism_name: Coriobacteriales bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4254

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Fusobacteriaceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin33

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: MDV bin33

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ares Genetics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Victivallaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Thailand: Roi ed

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Kasetsart University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Saudi Arabia: Riyadh

ncbi_isolation_source: Catheter

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: United Kingdom: southeast England

ncbi_isolation_source: Fecal material [ENVO:00002003]

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: Quadram Institute Bioscience


ncbi_assembly_name: De novo assembly of KCRI isolate RDK01_150C

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2651870170 annotated assembly

ncbi_organism_name: Paraburkholderia phenazinium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium S447

ncbi_submitter: Washington University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Washington; University Place

ncbi_isolation_source: One-stage PNA wastewater reactor

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: USA: Walter Reed Army Medical Center; Washington; DC

ncbi_organism_name: Acinetobacter baumannii OIFC143

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_country: Taiwan

ncbi_isolation_source: Pus

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: USA: Georgia

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. GAWG1-1

ncbi_submitter: Emory University


ncbi_country: China: Zhengzhou

ncbi_isolation_source: urine sample from a 55-year-old female with chronic diarrhea

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Medytox


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Russia: Moscow

ncbi_isolation_source: vent. liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SMMC6037

ncbi_submitter: Broad Institute


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: EPFL


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: Czech Republic: Velechvin

ncbi_isolation_source: pond water

ncbi_organism_name: Acinetobacter sp. ANC 3791

ncbi_submitter: National Institute of Public Health


ncbi_organism_name: Janthinobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium RIFCSPHIGHO2_01_FULL_42_27


ncbi_country: Canada: Smith s Cove; Nova Scotia

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Faecalibacterium sp. CAG:1138

ncbi_submitter: DTU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cinvestav


ncbi_country: China: Shenzhen Guangdong

ncbi_isolation_source: throat swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Xiehe Shenzhen Hospital of Huazhong University of Science and Technology


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Atlantic Ocean: West Florida Escarpment

ncbi_isolation_source: gills from mollusc collected from dive Alvin 2796

ncbi_submitter: Universite de Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Vesicomyidisocius;x__unclassified Candidatus Vesicomyidisocius;s__Candidatus Vesicomyidisocius sp. Psoy_5_S11


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Alteribacter populi

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Ethiopia: Oromiya; West shewa; Holeta

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: Pus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolation_source: human gut

ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R850;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA1030

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA1030


ncbi_country: Denmark: Aalborg

ncbi_isolation_source: Biopsy

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_organism_name: Bacteriovoracaceae bacterium UBA4573


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Trento


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Herbs

ncbi_submitter: California Department of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Salford


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_assembly_name: freshwater MAG --- KT3_bin-413

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: RMIT University


ncbi_country: France: Paris

ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Tannerellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Trichococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV231

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Parma


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: Bacterioplanoides sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Center for industrialization of agriculture and livestock microorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Streptomyces sp. NPDC008159

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_submitter: Umea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_isolation_source: cold seep

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: National Health Research Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolate: metabat2_XCR1_HOM_7852_bwa.53 MAG

ncbi_organism_name: Faecalibacterium sp. An121

ncbi_strain_identifiers: metabat2_XCR1_HOM_7852_bwa.53 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Russia

ncbi_isolation_source: feces from gastrointestinal tract of a healthy adult female

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Alachua; FL

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: South Korea

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Clostridium ganghwense

ncbi_submitter: Zhejiang University


ncbi_country: Australia

ncbi_isolation_source: necrotic enteritis field case

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: RMIT


ncbi_country: USA: NY

ncbi_isolation_source: produce field drag swab

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_organism_name: Akkermansia muciniphila


ncbi_strain_identifiers: SARB61;SGSC 2518

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanleyville;x__Salmonella enterica subsp. enterica serovar Stanleyville str. CFSAN000624


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Germany: Zoo Saarbruecken

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Kerfeldbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kerfeldiibacteriota;x__unclassified Candidatus Kerfeldbacteria;s__Candidatus Kerfeldbacteria bacterium


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-436-D21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides sp. AF36-11BH

ncbi_submitter: BGI


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: LokiAmp MDA-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Pseudoalteromonas prydzensis

ncbi_submitter: The University of Hong Kong


ncbi_country: Australia: Clermont; QLD

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolate: B azoricus SOX ET2 1586I

ncbi_isolation_source: gill tissue

ncbi_strain_identifiers: B azoricus SOX ET2 1586I

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Bathymodiolus thermophilus thioautotrophic gill symbiont


ncbi_country: Japan

ncbi_isolation_source: freshwater

ncbi_organism_name: Umezakia ovalisporum Ak1311

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: India: Trans-Himalayan region of Ladakh; Lotus Pond Hot Spring

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Tepidimonas taiwanensis

ncbi_submitter: Bose Institute


ncbi_isolation_source: marine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_organism_name: Pseudomonas sp. N-137

ncbi_submitter: Shanxi Agricultural University


ncbi_country: Japan: Yamanashi; Kiyosato Hokuto-shi

ncbi_isolate: Adelges kitamiensis 18-608

ncbi_isolation_source: Picea maximowiczii

ncbi_strain_identifiers: Adelges kitamiensis 18-608

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Candidatus Profftia;x__unclassified Candidatus Profftia;s__Candidatus Profftia sp. (ex Adelges kitamiensis)


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: North Atlantic Ocean

ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Guangdong Province

ncbi_isolation_source: marine algae

ncbi_organism_name: Phaeocystidibacter luteus

ncbi_submitter: University of Tasmania


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 117

ncbi_organism_name: Staphylococcus auricularis

ncbi_strain_identifiers: SNUC 993

ncbi_submitter: University of Calgary


ncbi_country: USA: Oregon

ncbi_isolation_source: respiratory tract (endotrachea)

ncbi_organism_name: Cupriavidus pauculus

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: South Korea: Incheon

ncbi_isolation_source: cocumber kimchi

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Incheon national university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC026589

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: caecum

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Priestia megaterium

ncbi_submitter: microbial pathogenic ecology group


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Anaerolineales bacterium


ncbi_isolation_source: Faeces


ncbi_country: Germany: near Wetzlar

ncbi_submitter: Technische Universitaet Dresden, Medical Faculty 'Carl Gustav Carus'


ncbi_submitter: University of Surrey


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Citrobacter braakii


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Germany

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_assembly_name: IMG-taxon 2619619008 annotated assembly

ncbi_organism_name: Alkalibacterium pelagium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Caecum

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFCSPHIGHO2_12_FULL_38_15


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Sanalona dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bovismorbificans


ncbi_organism_name: Streptococcus sp. 27098_8_186

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin77

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MDV bin77

ncbi_submitter: Monash University


ncbi_country: South Korea: Gyeongnam

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Food-borne Pathogen Omics Research Center, FORC


ncbi_isolation_source: Guangdong; China

ncbi_organism_name: Leptospira weilii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_country: Denmark

ncbi_isolation_source: in vitro phage -resistant clone

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: PLEURAL FLUID

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Finland: Lahti

ncbi_isolation_source: barley grains

ncbi_organism_name: Acidipropionibacterium jensenii

ncbi_submitter: University of Helsinki


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Streptomyces sp. NPDC088353

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: Japan

ncbi_isolation_source: UCC isolate

ncbi_organism_name: Yersinia pestis

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Rheinheimera sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Chelatococcus sp.


ncbi_country: USA: Minnesota

ncbi_isolation_source: Tracheal Aspirate

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Environmental Science and Research


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Streptomyces sp. NPDC057680


ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: uncultured Rhodanobacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Anterior Nose

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Seoul National University Children's Hospital


ncbi_organism_name: Sphingopyxis sp. JAI108

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum


ncbi_country: South Korea

ncbi_isolation_source: tongue coating

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: DOCSMEDI Co., Ltd.


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EBI


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-862

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: United Kingdom

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health England


ncbi_country: India: Uttar Pradesh; Deoria; Savreji


ncbi_organism_name: Streptomyces sp. NBC_01438

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mixta calida


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil: Canaa dos Carajas

ncbi_isolation_source: water

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: USA: HI

ncbi_isolation_source: albacore tuna anal vent

ncbi_organism_name: Photobacterium angustum


ncbi_organism_name: Anderseniella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Waddliaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: France

ncbi_organism_name: Faecalibacterium langellae

ncbi_strain_identifiers: CNCM I-4540

ncbi_submitter: Federal University of Minas Gerais


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Vienna


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_country: South Korea: Goesan

ncbi_isolation_source: Potato bacterial wilt

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: National Institute of Agricultural Sciences, RDA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: biofloc rearing seawater

ncbi_submitter: Inha University


ncbi_country: Hungary: Bugyi

ncbi_isolation_source: enrichment culture AER3 inoculated with biofilm which develop in hydrocarbon contaminated groundwater; aerobic enrichment culture amended with 20 ppm diesel fuel/ crude oil mixture (3:2; v/v) as carbon and energy sources

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Szent Istvan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: abdominal

ncbi_organism_name: Escherichia coli

ncbi_submitter: Brigham & Women's Hospital


ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M73703

ncbi_submitter: Broad Institute


ncbi_isolation_source: Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: USA: Seattle

ncbi_isolation_source: Wound Right Shoulder operative skin

ncbi_organism_name: Cutibacterium namnetense

ncbi_submitter: University of Washington


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: University of Calgary


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: USA: Berrien County; Michigan

ncbi_organism_name: Pseudomonas congelans

ncbi_submitter: Max Planck Institute


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Acetobacter sp. UBA5411

ncbi_submitter: University of Queensland


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP116Bi

ncbi_submitter: Washington University


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: urethral secretions

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_country: USA: Houston

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hotspring water

ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: University of Delhi


ncbi_country: Netherlands

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae 2082170

ncbi_submitter: Academic Medical Center Amsterdam, The Netherlands


ncbi_country: Baltic Sea

ncbi_isolation_source: water

ncbi_organism_name: Porticoccaceae bacterium UBA2538


ncbi_country: USA

ncbi_organism_name: Mycobacterium avium

ncbi_submitter: University of Michigan Medical School


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Kocuria salsicia

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas sp. W2-17

ncbi_submitter: Institut de recherche Labiris


ncbi_assembly_name: Rumen uncultured genome RUG13421

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Ruminococcus flavefaciens

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Streptococcus salivarius CCHSS3

ncbi_submitter: Institut National de la Recherche Agronomique (INRA)


ncbi_isolation_source: urine

ncbi_submitter: SRCAMB


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acinetobacter sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Stenotrophomonas africana

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: New Zealand

ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: AUT University


ncbi_organism_name: Bifidobacterium choerinum DSM 20434

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Rhizobium sp. 969_B3_N1_2

ncbi_submitter: VIB


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eisenbergiella massiliensis

ncbi_submitter: EMG


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Acholeplasmatales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Texas

ncbi_isolation_source: transedoscopic tracheal wash

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing University


ncbi_country: China

ncbi_isolation_source: Dianchi Lake

ncbi_organism_name: Microcystis aeruginosa FACHB-905 = DIANCHI905

ncbi_submitter: Institute of Hydrobiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: Klebsiella pneumoniae

ncbi_strain_identifiers: Klebsiella pneumoniae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudooceanicola sp. 200-1SW

ncbi_submitter: Ministry of Natural Resources


ncbi_organism_name: uncultured Mageeibacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: uncultured Ktedonobacterales bacterium


ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Enterobacter cloacae complex sp. SHL016

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. SHL016


ncbi_organism_name: Sinomonas flava

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Bartonella sp. MM97QHHN

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Nitratidesulfovibrio sp. D1

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolate: metabat2_coassembly_bwa.877 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_coassembly_bwa.877 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_submitter: Univeristy of South Australia


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Venezuela: Lara; Quebrada de Oro

ncbi_isolation_source: soil

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Instituto de Salud Carlos III


ncbi_country: USA: Point Judith; Narragansett; RI

ncbi_isolation_source: gill tissue

ncbi_organism_name: Solemya velum gill symbiont

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__sulfur-oxidizing symbionts;s__Solemya velum gill symbiont


ncbi_organism_name: Comamonas terrigena

ncbi_submitter: SC


ncbi_organism_name: bacterium 1xD42-67

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chlamydia trachomatis A/HAR-13

ncbi_submitter: Lab of Human Bacterial Pathogenesis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Wyoming


ncbi_isolate: AOP23_C1_coeur _bin _8

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: AOP23_C1_coeur _bin _8

ncbi_submitter: Genoscope


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: freshwater

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Clostridioides difficile CD144

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Collinsella bouchesdurhonensis

ncbi_submitter: EMG


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: USDA


ncbi_country: Chile: Coquimbo Region; Atacama Desert

ncbi_isolation_source: soil; very fine sand with crust

ncbi_organism_name: Myxacorys chilensis ATA2-1-KO14

ncbi_submitter: University of California, Riverside


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 69 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: University of Michigan Medical School


ncbi_country: Germany:Fuerstenberg; Havel

ncbi_isolation_source: Osmia caerulescens

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wOc

ncbi_submitter: University Leipzig


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Manhattan; KS

ncbi_isolation_source: Probiotic

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Kansas State University


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: stool

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hunan

ncbi_isolation_source: sediment

ncbi_organism_name: Lutibacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Roslinia caecavium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Roslinia;s__Candidatus Roslinia caecavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Roslinia;s__Candidatus Roslinia caecavium


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Lower gallery with a lake; inside a wall diverticulum; 1 m above the cave floor

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_organism_name: Acinetobacter radioresistens


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_strain_identifiers: NRRL B23152

ncbi_submitter: University of Bath

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar malayensis


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Pleurocapsa sp. CRU_1_2

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: India: Mumbai

ncbi_isolation_source: urinary tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: coastal sediment

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: Faeces

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Sphingomonas sp. CFBP 13728

ncbi_submitter: INRAE


ncbi_country: China: Xinjiang

ncbi_isolation_source: saline sediment

ncbi_organism_name: Pseudalkalibacillus salsuginis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: raw pistachio

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Worthington


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA3754

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA3754


ncbi_assembly_name: Rumen uncultured genome RUG10622

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M13316

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: RESIDENTIAL AGED CARE FACILITY

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of South Australia


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Health Canada


ncbi_country: Brazil: Cidreira

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Federal University of Health Sciences of Porto Alegre


ncbi_country: Spain

ncbi_organism_name: Xanthomonas nasturtii

ncbi_submitter: University of Exeter


ncbi_organism_name: Oribacterium sinus

ncbi_submitter: EMG


ncbi_organism_name: Paraburkholderia nemoris

ncbi_submitter: University of Illinois at Chicago


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Primary Effluent)

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Kunming

ncbi_isolation_source: environmental swabs

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Mahidol university


ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: China

ncbi_organism_name: Bacillus safensis

ncbi_submitter: China Agricultural University


ncbi_country: France: department 01

ncbi_isolation_source: boot swabs from broiler farm

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: liver

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Hengyang

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Hengyang Medical School, University of South China


ncbi_submitter: ANSES


ncbi_country: USA: Hawaii

ncbi_organism_name: Streptomyces sp. SID8111

ncbi_submitter: University of Wisconsin Madiso


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Institute of the Sea (IUEM) - France

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Candidatus Parabeggiatoa sp. nov. 2

ncbi_submitter: Harvard University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Thiotrichaceae;g__Candidatus Parabeggiatoa;x__unclassified Candidatus Parabeggiatoa;s__Candidatus Parabeggiatoa sp. nov. 2


ncbi_country: Italy: Volterra

ncbi_organism_name: Rhizobium sullae

ncbi_submitter: Technical University of Denmark


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Rakuno Gakuen University


ncbi_organism_name: Alistipes sp. UBA6068


ncbi_organism_name: Xanthomonas campestris pv. incanae

ncbi_submitter: University of Exeter


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylocystis sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Japan

ncbi_isolation_source: Paddies

ncbi_organism_name: Pseudomonas azotoformans

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: China:Xinjiang Hutubi County cotton planting farm

ncbi_isolation_source: Cotton rhizosphere soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: Nanjing Tech University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2023EL-00962