ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


gtdb_representative: t

gtdb_type_species_of_genus: t

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Ornithinimicrobium humiphilum

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_organism_name: Escherichia coli 908691

ncbi_submitter: Washington University


ncbi_country: Lebanon

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01431

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01431


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Iowa

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: USDA-ARS


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Prevotella veroralis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: clinical

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX3

ncbi_submitter: University of Minnesota


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- VK_bin-0557

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Micrococcales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium longum


ncbi_country: China: The East China Sea

ncbi_isolation_source: Natural surface seawater

ncbi_organism_name: Marinobacter salarius

ncbi_submitter: Ocean University of China


ncbi_assembly_name: IMG-taxon 2622736609 annotated assembly

ncbi_organism_name: Mesorhizobium australicum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: pasta filata cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: BGI


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Colombia: Antioquia; Bello

ncbi_isolation_source: Tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Antioquia


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Germany: Heidelberg

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Heidelberg University Hospital


ncbi_organism_name: Sphingobacterium sp. ML3W

ncbi_submitter: INRS


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: bronchial alveolar lavage

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii 1S-152-0914


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0230

ncbi_submitter: Broad Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Singulisphaera sp. GP187

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Spain: Barcelona

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: University of California San Francisco


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Lobaria metagenome

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Serbia: Sid

ncbi_organism_name: Xanthomonas arboricola pv. corylina

ncbi_submitter: University of Exeter


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: Environmental; poisoned bongkrek

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Leyella stercorea

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium UBA6188


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: China: Hainan Island

ncbi_organism_name: Pseudoalteromonas sp. SCSIO 43088

ncbi_strain_identifiers: SCSIO 43088

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_isolation_source: Swine

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_level: Chromosome

ncbi_country: Mexico

ncbi_isolation_source: environmental material [ENVO:00010483]

ncbi_organism_name: Lacticaseibacillus pantheris

ncbi_submitter: CENTRO DE INVESTIGACION EN ALIMENTACION Y DESARROLLO


ncbi_country: USA: SD

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Denmark: Kongens Lyngby

ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Veillonella atypica

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptomyces sp. NBC_01116


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_assembly_name: IMG-taxon 2596583643 annotated assembly

ncbi_organism_name: Pseudidiomarina indica

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Uzbekistan: Kyzylkum desert

ncbi_isolation_source: saltwort

ncbi_organism_name: Modestobacter sp. VKM Ac-2980

ncbi_strain_identifiers: VKM Ac-2980

ncbi_submitter: G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms, PSCBR RAS


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: ETH Zurich


ncbi_country: USA: LA

ncbi_isolation_source: Lymph node

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. novicida;x__Francisella tularensis subsp. novicida D9876


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P43RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P43RS


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanxi Agricultural University


ncbi_country: China: Shanaxi

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured Solobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Granulosicoccaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Lysinibacillus sp. NPDC093688

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Agathobacter rectalis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Bacillus cereus group sp. BceL202

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL202


ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Ancylobacter sp. sgz301288

ncbi_submitter: fujian agriculture and forest university


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Alcanivorax sp. IL3

ncbi_submitter: Ariel university


ncbi_organism_name: Alistipes sp.


ncbi_organism_name: Treponema sp.

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Panacagrimonas sp.

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_organism_name: Aeromonas sp. 700722

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Gaiella sp.

ncbi_submitter: Monash University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_country: Russia: Moscow

ncbi_isolation_source: ventilation drainage

ncbi_submitter: SRCAMB


ncbi_organism_name: Oscillospiraceae bacterium 44-34

ncbi_submitter: Nanjing University


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: blood

ncbi_submitter: The University of Queensland


ncbi_submitter: Sun-yat Sen University


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas sp. CCI3.1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Switzerland: St.Gallen

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Center for Laboratory Medicine


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Polyangium sp.

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_assembly_name: freshwater MAG --- E14_bin-0086

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: INRA


ncbi_isolation_source: Urinary Tract

ncbi_organism_name: Staphylococcus sp. HMSC12H08

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Moritella viscosa

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Enterococcus sp. DIV0210

ncbi_submitter: Broad Institute


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural University


ncbi_submitter: SRCAMB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Pseudomonas sp. 17053182

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_organism_name: Marinobacter sp. C2H3

ncbi_submitter: Xiamen University


ncbi_submitter: Yangzhou university


ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_country: Australia

ncbi_isolation_source: rockmelon

ncbi_organism_name: Weissella confusa

ncbi_submitter: The University of Queensland


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: SCOPE


ncbi_country: China: Shanghai

ncbi_isolation_source: Seaweed

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Eastern Regional Research Center -ARS-USDA


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_submitter: SC


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Clavibacter sepedonicus

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Ares Genetics


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_submitter: University of Liege


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Italy: Umbria

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Canada: Vancouver

ncbi_isolation_source: stool of a ~10 day-old infant on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Acidulodesulfobacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;x__unclassified Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium sp.


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Shaanxi

ncbi_isolation_source: Chinese pickles (in soy sauce)

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Yersinia pestis G1996006

ncbi_submitter: Beijing Genomics Institute


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: University of California, Berkeley


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Tabrizicola sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Zhejiang University


ncbi_country: Argentina: Copahue; Puente de Gendarmera; Rio Agrio Inferior

ncbi_isolation_source: 0.22 Um filtrate of the Rio Agrio Inferior river water column sample collected from geothermal system Copahue-Caviahue-ChanchoCo

ncbi_organism_name: Acidocella sp.

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces violascens

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: New Zealand: Waikato

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong Institute of Microbiology; Guangzhou

ncbi_isolation_source: contaminated nutrient agar plate

ncbi_organism_name: Corynebacterium guangdongense

ncbi_submitter: Bielefeld University


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: metagenome

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: addis ababa university


ncbi_organism_name: Acinetobacter guillouiae

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: South Korea: South Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Sneathiella sp. HT1-7

ncbi_submitter: Chungbuk national university


ncbi_organism_name: bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Ottowia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Raoultella planticola


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Limnohabitans sp.


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_country: India: Jodhpur

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: IIT JODHPUR


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: USDA-APHIS


ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Abdominal

ncbi_organism_name: Haemophilus sp. HMSC61B11

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: organic lettuce and spinach mix

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Japan: Toyama

ncbi_isolation_source: blood

ncbi_submitter: Kanazawa University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Mesorhizobium sp. M0984

ncbi_submitter: Washington State University


ncbi_country: China

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Burkina Faso

ncbi_isolation_source: Carcasses

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC020298

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Bloodstream

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 8

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of Glasgow


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium rhinophilum

ncbi_submitter: Duke University


ncbi_country: USA: Ohio

ncbi_isolation_source: groundwater

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Capnocytophaga sp.

ncbi_submitter: EMG


ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater outflow

ncbi_organism_name: Escherichia coli

ncbi_submitter: BIOTEC


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Caldibacillus sp. 210928-DFI.2.18

ncbi_submitter: University of Chicago


ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Staphylococcus pasteuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Changping district; Beijing

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: China: Chengdu

ncbi_isolation_source: Pork meat

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Geobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: Norway

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: Emmental cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_strain_identifiers: CIRM-BIA 2189

ncbi_submitter: Brigham Young University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_country: USA:Canoe Beach; Nahant; MA

ncbi_organism_name: Alteromonas stellipolaris

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_country: Italy

ncbi_isolation_source: minced meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division CPR2;s__candidate division CPR2 bacterium GW2011_GWD2_39_7


ncbi_country: Denmark

ncbi_isolation_source: phage resistant culture

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: University of Copenhagen


ncbi_country: Germany

ncbi_isolation_source: dairy farm

ncbi_organism_name: Mammaliicoccus sp. D-M20

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Bifidobacterium sp.


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Australia

ncbi_organism_name: Dickeya sp. CFBP 2040

ncbi_strain_identifiers: CFBP 2040

ncbi_submitter: University LYON1


ncbi_assembly_name: IMG-taxon 2600255308 annotated assembly

ncbi_organism_name: Agrobacterium fabrum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SC


ncbi_submitter: China Agriculture University


ncbi_organism_name: Orientia tsutsugamushi str. Kato PP

ncbi_strain_identifiers: Kato PP

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Orientia;s__Orientia tsutsugamushi;x__Orientia tsutsugamushi str. Kato PP


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Roseibacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aarhus University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium CG11_big_fil_rev_8_21_14_0_20_41_10


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: International Space Station Surface: Columbus Module

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: City of Belo Horizonte; State of Minas Gerais

ncbi_isolation_source: tracheal secretion isolated from an uncertain age woman

ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_country: Japan

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Kobe Institute of Health


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of Chicago


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Ligilactobacillus agilis


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus

ncbi_submitter: BGI


ncbi_organism_name: Streptomyces sp. NPDC002935

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Limnobacter sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pontimonas sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Pharynx Swab

ncbi_submitter: University of West London


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_isolation_source: Seawater

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: candidate division FCPU426 bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division FCPU426;s__candidate division FCPU426 bacterium


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Lunds Universitet

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Syntrophomonas sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-0719

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0999

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Qingdao GBW Group Co., Ltd.


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: New York

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Chicago


ncbi_organism_name: Bacillus sp. IS1

ncbi_submitter: faculty of sciences of sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. IS1


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Blautia sp. TF10-30

ncbi_submitter: BGI


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Austria: Wals; Mooscreek

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Rhodoluna limnophila

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: surface swab

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-1448

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Cryptobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Hybrid Snakehead

ncbi_organism_name: Nocardia seriolae

ncbi_submitter: Pearl River Fisheries Research Institute


ncbi_country: Japan: Saitama; Kawagoe

ncbi_isolation_source: human metabolite

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Department of Microbiology, Juntendo University School of Medicine


ncbi_country: France

ncbi_isolation_source: Red wine

ncbi_organism_name: Oenococcus oeni S19

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_submitter: EMG


ncbi_organism_name: Dissulfurispiraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ghana: Accra

ncbi_isolation_source: Rectal swabs

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Limiplasma sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;x__unclassified Candidatus Limiplasma;s__Candidatus Limiplasma sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Rhizobium beringeri

ncbi_submitter: ARRIAM


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Rhodoplanes sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Chloroherpetonaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Soochow University


ncbi_country: Israel: Bet Dagan

ncbi_isolation_source: loamy soil

ncbi_organism_name: Pseudoduganella chitinolytica

ncbi_submitter: University of Tuebingen


ncbi_country: Pacific Ocean: South China sea: Haima seep

ncbi_isolation_source: cold seep sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_assembly_name: freshwater MAG --- MJ130916B_bin-450

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_assembly_name: LM6186 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Broad Institute


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM22702

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Tunisia: Bulla-Regia

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: CBBC


ncbi_country: Thailand: Khon Kean

ncbi_isolation_source: vagina

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: RCEID, Khon Kaen University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7095


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Serratia marcescens


ncbi_isolation_source: Environmental; sugarcane plantation soil

ncbi_organism_name: Paraburkholderia sacchari

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Saudi Arabia: Abo Shoosha reef

ncbi_isolation_source: Porites lutea and Goniastrea edwardsi coral colonies

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Konstanz


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Switzerland

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_country: Turkey

ncbi_isolation_source: cheese

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Pseudomonas sp. o96-267

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Roseateles sp.

ncbi_submitter: Xiamen University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Myxococcales bacterium


ncbi_organism_name: Chlamydia pneumoniae TW-183

ncbi_submitter: ALTANA Pharma


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Lufeng County; Chuxiong City; Yunnan Province

ncbi_isolation_source: feces

ncbi_organism_name: Ornithinimicrobium sufpigmenti

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPHIGHO2_02_FULL_44_51


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Longimicrobium terrae

ncbi_strain_identifiers: CECT 8660


ncbi_assembly_name: Rumen uncultured genome RUG14005

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Miami; FL

ncbi_isolation_source: Pig skin (A); aerobic; NASA; Univ. of Miami; USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolation_source: sputum


ncbi_country: Germany

ncbi_isolation_source: Poultry Meat (Thighs)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The German Federal Institute of Risk Assessment (BfR)


ncbi_country: China: Shandong

ncbi_isolation_source: lung

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: USA: Georgia

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. GACF4

ncbi_submitter: Emory University


ncbi_country: Peru: Junin

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: Bangladesh

ncbi_isolation_source: Mastitis milk

ncbi_submitter: Bangladesh Agricultural University


ncbi_organism_name: Ottowia beijingensis

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Georgia; Sapelo Island

ncbi_isolation_source: surface seawater inoculated into a synthetic phycosphere

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Georgia


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 421

ncbi_submitter: SC


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Portugal: Palmela; Serra do Louro

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas thivervalensis

ncbi_submitter: UFSC


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Hungatella hathewayi


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Amycolatopsis sp. lyj-109

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Rhizobium sp. 862_C5_N1_2

ncbi_submitter: VIB


ncbi_organism_name: Segatella copri

ncbi_submitter: Wilmar International Limited


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM20888

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: University of Georgia


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- MJ110830A_bin-325

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Elusimicrobia bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: VRF CWCF MDR 670

ncbi_isolation_source: sputum

ncbi_strain_identifiers: CWCFVRF MDRTB 670

ncbi_submitter: VISION RESEARCH FOUNDATION, SANKARA NETHRALAYA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis CWCFVRF MDRTB 670


ncbi_country: Brazil: Florianopolis

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_country: Russia:Moscow Region

ncbi_organism_name: Lelliottia sp. F159

ncbi_submitter: Institute of Bioorganic Chemistry


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: China: Jiangsu

ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptomyces sp. Tue6028

ncbi_submitter: BGI Research


ncbi_organism_name: Ruminococcus intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cryomorphaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: University of Alberta


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Yantai University


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactobacillus;s__Lactobacillus kefiranofaciens;sb__Lactobacillus kefiranofaciens subsp. kefirgranum;x__Lactobacillus kefiranofaciens subsp. kefirgranum DSM 10550 = JCM 8572


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Ectothiorhodospiraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: not provided

ncbi_organism_name: Ottowia sp. oral taxon 894

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Comamonadaceae;g__Ottowia;x__unclassified Ottowia;s__Ottowia sp. oral taxon 894


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway: Ny-Alesund; Svalbard

ncbi_isolation_source: Cold environment (ENVO:01000309)

ncbi_organism_name: Pseudomonas sp. PMCC200344

ncbi_submitter: Polar Research Institute of China


ncbi_country: China: Yangzhou

ncbi_isolation_source: pork from retail market

ncbi_organism_name: Klebsiella sp. M621

ncbi_submitter: YangZhou university


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Shaanxi

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_country: Netherlands: Olburgen

ncbi_isolation_source: partial-nitritation anammox (PNA) reactor; full scale (600m3) reactor for the removal of ammonium from wastewater from the potato processing industry

ncbi_organism_name: Candidatus Parvibacillus calidus

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Stutzerimonas balearica


ncbi_country: India: Pune

ncbi_isolation_source: Probiotic Capsule

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Agharkar Research Institute


ncbi_country: Turkey

ncbi_isolation_source: Orontes river

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Salmonella enterica

ncbi_submitter: wenzhou Medical university


ncbi_isolation_source: Clinical; cystic fibrosis patient

ncbi_organism_name: Burkholderia latens

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Brevibacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megamonas funiformis


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: China

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Stieleria marina

ncbi_submitter: Leibniz-Institute DSMZ German Collection of Microorganisms and Cell Cultures


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lentibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: IMG-taxon 2654588137 annotated assembly

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: urine tube tip

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Acholeplasmataceae bacterium UBA5264

ncbi_submitter: University of Queensland


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: Shenzhen

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-2874

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: USA: Alachua; FL

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Russia: near Moscow

ncbi_organism_name: Acetobacterium paludosum

ncbi_submitter: National Energy Technology Laboratory | Leidos


ncbi_country: USA: Isle of Palms; SC

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA

ncbi_isolation_source: food packaging

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. CT_02035327


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Caulobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: CDC


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. NW408

ncbi_submitter: Sichuan University


ncbi_country: USA: California

ncbi_isolation_source: well water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Utah


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D2_bin-1305

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Italy

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Chitinophagaceae bacterium UBA1946

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Youngheung Island

ncbi_isolation_source: marine sediment from tidal flat

ncbi_organism_name: Nonlabens sp. YIK11

ncbi_submitter: Korea Institute of Ocean Science and Technology


ncbi_country: France: Grand Anguillon river

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium quasiaquaticum

ncbi_submitter: Sorbonne University


ncbi_country: Japan

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Zurich


ncbi_isolation_source: cloacal swab

ncbi_submitter: University of Greifswald, Institute of Pharmacy


ncbi_country: Ireland: Dungloe Bay

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Cefas


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae 2081685

ncbi_submitter: Academic Medical Center Amsterdam, The Netherlands


ncbi_country: USA: Jacksonville; FL

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_country: USA: NC

ncbi_isolation_source: plant root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium GW2011_GWF2_43_18


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: White Oak Rive Estuary; North Carolina

ncbi_isolation_source: Sulfate-methane transisition zone estuary sediments 16-26 cm

ncbi_submitter: University of Texas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR_3 bacterium SM23_42


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: United Kingdom: London

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_country: USA: FL

ncbi_isolation_source: feces

ncbi_submitter: US Food and Drug Administration


ncbi_submitter: National Institute of Animal Health


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: China: Xi an; Shaanxi Province

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. QL37

ncbi_submitter: Institute of Biology Leiden


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: MD

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycolicibacterium sp. 050158

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA

ncbi_isolation_source: Wound; L Plantar Foot

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Caecum


ncbi_country: China: Shenzhen

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: BGI


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus sp. HMSC11C05

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Nonomuraea zeae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Morganella sp. TYF_6

ncbi_submitter: WenZhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. TYF_6


ncbi_country: USA: Texas

ncbi_isolation_source: Bone/Joint

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: USA: Sammy Creek Landing; Sugarloaf Key; FL

ncbi_isolation_source: shallow marine sediment

ncbi_submitter: Clemson University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Ctena orbiculata


ncbi_isolation_source: Environmental; sugarcane roots

ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Antitype chi


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: saline solutions for nasal application

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Institute for Bioengeneering and Biosciences


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: IMG-taxon 2695420921 annotated assembly

ncbi_organism_name: Salegentibacter echinorum

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eggerthella sp. BIOML-A4

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: zhejiang university


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: Poland: Biebrzanski Park Narodowy

ncbi_isolation_source: peat soil

ncbi_organism_name: Serratia plymuthica

ncbi_submitter: Exploratories for large-scale and long-term functional biodiversity research


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Prevotella conceptionensis


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: mastitis milk

ncbi_submitter: University of Zurich


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: pig gut metagenome


ncbi_country: Indonesia: Sangeang Island

ncbi_isolation_source: Boiling beach during volcanic eruption

ncbi_organism_name: Thermotoga sp. SG1

ncbi_submitter: University of Alberta


ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled cattle fecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_organism_name: Campylobacter concisus

ncbi_submitter: EMG


ncbi_organism_name: Terrabacter sp. LjRoot27

ncbi_submitter: Aarhus University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria innocua

ncbi_submitter: CSIRO


ncbi_country: USA: Morrow County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1B8

ncbi_submitter: Oregon State University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_submitter: Portland State University


ncbi_isolation_source: Environment

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CFSAN000828


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Phaeobacter sp. A90-2a-3-a

ncbi_submitter: DTU


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Staphylococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Gallionella sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Alberta


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Lund University


ncbi_submitter: Teesside University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Gemella morbillorum

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_country: China: Hong Kong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Dechloromonas sp. UBA6271

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Salmonella sp. NW77

ncbi_submitter: Sichuan University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UIUC


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Desulfobulbus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: meadow soil

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Pseudoflavonifractor sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Pelobium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Caldisericia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_organism_name: Serratia nevei

ncbi_submitter: McMaster University


ncbi_country: China: JiangSu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_country: Czech Republic

ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: Spain

ncbi_isolation_source: Processing Plant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: ISCIII


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2603880185 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFIX46

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pantoea sp. NSTU24

ncbi_submitter: Noakhali Science and technology university


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: sinus

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: Bolivia: Tarija

ncbi_isolation_source: red colored salt from deposit

ncbi_organism_name: Salinicoccus roseus

ncbi_submitter: UC Davis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Maryland

ncbi_isolation_source: Bovine

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: USA: Falcon Heights; Minnesota

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_assembly_name: freshwater MAG --- AM_bin-3698

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Hoylesella oralis


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_country: United Kingdom:England

ncbi_isolation_source: darcocystitis

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Rumen uncultured genome RUG13285

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Carnobacterium maltaromaticum


ncbi_organism_name: Leucobacter chromiiresistens JG 31

ncbi_strain_identifiers: JG 31

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-48B2

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Anaerococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Georgenia ruanii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Ascites

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Streptomyces eurythermus


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Hong Kong