ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Friedrich Schiller University Jena

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


gtdb_representative: f

ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Kanazawa University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_assembly_level: Contig

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Tibet

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: Research and Development Center, Biogrowing Co., Ltd.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium RIFCSPLOWO2_01_FULL_41_18


ncbi_assembly_level: Complete Genome

ncbi_country: Switzerland

ncbi_isolation_source: bloodstream

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Inselspital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: Biogas slut

ncbi_organism_name: Propionispora sp. 2/2-37

ncbi_submitter: CEBITEC


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis UT0028

ncbi_submitter: Broad Institute


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecium 1,141,733


ncbi_organism_name: Pseudomonas sp. OV226

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Tulelake; California

ncbi_isolation_source: plant stem

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Gordonia sp. UBA5067

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. UBA5067


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22516;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. m1-2

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. m1-2


ncbi_country: South Korea: Jeonju

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Institute of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: India

ncbi_submitter: JCVI


ncbi_country: China: Guangdong

ncbi_organism_name: Acinetobacter sp. YH18001

ncbi_submitter: South China Agricultural University


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: warm; humid forested area with dark clay soil; about 15 cm from the trunk of an Encino tree (Quercus glaucoides (5 cm deep))

ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: Technical University of Denmark


ncbi_country: Russia: Moscow

ncbi_isolation_source: human stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Federal Research and Clinical Center of Physical-Chemical Medicine of FMBA of Russia


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada

ncbi_isolation_source: stool sample (feces)

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Canadian Science Centre for Human and Animal Health


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1104S

ncbi_submitter: Broad Institute


ncbi_organism_name: Chthoniobacter sp.

ncbi_submitter: University of East Anglia


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Gansu

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Actinomadura yumaensis

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: deep sea sediment sample 4871-20 in thermophilic enrichment culture

ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Reseda; CA

ncbi_isolation_source: Base of eucalyptus tree near dog training area at Reseda Park; a suburban public park

ncbi_organism_name: Sporosarcina sp. P3

ncbi_submitter: University of Arizona


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP1_H1_surf _bin _26

ncbi_organism_name: Sphingobacterium sp.

ncbi_strain_identifiers: AOP1_H1_surf _bin _26

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Symbiopectobacterium sp.

ncbi_submitter: Faculty of Science, University of South Bohemia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Symbiopectobacterium;x__unclassified Symbiopectobacterium;s__Symbiopectobacterium sp.


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Sphingobacterium mizutaii

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Salmonella sp. LSP 37/00

ncbi_submitter: University of Oviedo


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Beijing Chao-Yang Hospital


ncbi_organism_name: Dactylosporangium siamense

ncbi_strain_identifiers: TBRC 1846


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: Australia

ncbi_isolation_source: skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_isolation_source: marine sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Serratia sp. FS14

ncbi_submitter: Nanjing Agricultural University Bioinformatics Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. FS14


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: human feces

ncbi_organism_name: Metabacillus idriensis

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_assembly_name: freshwater MAG --- AM-2014-D8_bin-0749

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_organism_name: Truepera radiovictrix

ncbi_submitter: University of South Africa


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMBL-EBI


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Lentisphaeria bacterium UBA7640

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__unclassified Lentisphaeria;s__Lentisphaeria bacterium UBA7640


ncbi_isolate: SPRUCE 468

ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_strain_identifiers: SPRUCE 468

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_isolation_source: Blood


ncbi_organism_name: Yersinia pestis M0000002

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Jiangnan University


ncbi_organism_name: Lacunisphaera sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: India

ncbi_isolation_source: oral swab

ncbi_organism_name: Kosakonia cowanii

ncbi_submitter: Assam down town University


ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_country: China: Nanchang Province

ncbi_organism_name: Brevibacillus sp. AY1

ncbi_submitter: Jiangxi Normal University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: [Pasteurella] aerogenes

ncbi_submitter: AAFC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;x__Pasteurellaceae incertae sedis;x__[Pasteurella] aerogenes-[Pasteurella] mairii-[Actinobacillus] rossii complex;s__[Pasteurella] aerogenes


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Desulfosarcinaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Xenobia bacterium

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;x__unclassified Candidatus Xenobia;s__Candidatus Xenobia bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio cyclitrophicus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada

ncbi_isolation_source: wheat flour

ncbi_submitter: Health Canada


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: China

ncbi_isolation_source: duck faeces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan Agricultural University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Dead waterfowl

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of KwaZulu Natal


ncbi_isolation_source: human gut

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cpo071

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas sp. WS 5411

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Pacific Ocean

ncbi_isolation_source: Mariana Trench water

ncbi_organism_name: Fidelibacterota bacterium PRS2

ncbi_submitter: Scripps Institution of Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium PRS2


ncbi_assembly_level: Chromosome

ncbi_country: Turkey: Adana

ncbi_isolation_source: fermented turnib (shalgam)

ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Erciyes University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus mictus

ncbi_submitter: Loyola University Chicago


ncbi_country: Canada: Katepwa Beach

ncbi_isolation_source: Water

ncbi_organism_name: Rheinheimera sp. KL1

ncbi_submitter: University of Regina


ncbi_isolation_source: patient environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Muenster


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sengenics sdn bhd


ncbi_organism_name: uncultured Eubacterium sp.


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Mabikibacter ruber

ncbi_submitter: Third Institute of Oceanography, SOA


ncbi_organism_name: Halobacteriovorax sp. RT-1-4

ncbi_submitter: Shandong University at Weihai


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG13561

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Dialister invisus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Candidatus Rariloculaceae bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Rariloculales;f__Candidatus Rariloculaceae;x__unclassified Candidatus Rariloculaceae;s__Candidatus Rariloculaceae bacterium


ncbi_organism_name: uncultured Ignavibacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Marinobacter lipolyticus

ncbi_submitter: Ocean University of China


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Lentimonas sp.

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Streptomyces californicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. NW539

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Universiti Putra Malaysia


ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Waterloo

ncbi_isolation_source: leachate from a leachate well at an active municipal landfill in Southern Ontario

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: strain P-8 in MRS medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education


ncbi_organism_name: Myxococcota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F36097

ncbi_submitter: Broad Institute


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Yantai University


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: USA

ncbi_isolation_source: Missouri Soil

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Ohio State university


ncbi_country: Mediterranean Sea

ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2001020

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolate: Clostridium neonatale JD124

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale JD124

ncbi_submitter: universite paris cite


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-1139

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Kuwait

ncbi_isolation_source: Central Line Tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Nimes University Hospital


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: World Institute of Kimchi


ncbi_country: United Kingdom: Wales

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Swansea University


ncbi_organism_name: Xanthomonas phaseoli pv. phaseoli

ncbi_submitter: Genoscope CEA


ncbi_organism_name: Oceanobacillus sp. FSL K6-0251

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Oceanobacillus;x__unclassified Oceanobacillus;s__Oceanobacillus sp. FSL K6-0251


ncbi_country: Denmark: Ejby Moelle; Odense

ncbi_isolation_source: wastewater

ncbi_organism_name: Rhodobacteraceae bacterium UBA1943

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Urechidicola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptomyces sp. NPDC051976

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan:Ibaraki; Tsukuba city

ncbi_isolation_source: soil

ncbi_organism_name: Kaistia sp. 32K

ncbi_submitter: Laboratory of Life Sciences for Extremophiles, Life Sciences, Toyo University


ncbi_country: USA: Colorado

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella quintana

ncbi_submitter: Division of Vector-Borne Diseases, Centers for Disease Control and Prevention


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Clemson University


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Brazil

ncbi_isolation_source: chicken

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-1472

ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oxalobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Yunnan

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Yunnan Provincial Centre for Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: horse dung

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_country: Germany: Munich

ncbi_isolation_source: expanded salami packages

ncbi_organism_name: Companilactobacillus mishanensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: filter

ncbi_organism_name: Gimesia aquarii

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: larynx

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China University of Technology


ncbi_country: China: Jiangsu

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou univeristy


ncbi_country: South Korea:Daejeon

ncbi_isolation_source: Bronchial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Basic Science Institute


ncbi_organism_name: Lactobacillus jensenii

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Pakistan: Peshawar

ncbi_isolation_source: Pus

ncbi_submitter: Umea University


ncbi_assembly_name: Rumen uncultured genome RUG10015

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Austria

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: AGES


ncbi_country: USA

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_submitter: JGI


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pullichristensenella;s__Candidatus Pullichristensenella excrementipullorum


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured bacterium


ncbi_country: USA: NY

ncbi_isolation_source: intestine

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Catenibacterium mitsuokai


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Spain: Walqa; Huesca

ncbi_isolation_source: intestinal content

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Universidad de Zaragoza


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_assembly_name: Rumen uncultured genome RUG471

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Gulosibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Macrococcus sp.


ncbi_organism_name: Paenibacillus sp. CR_12

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: porcine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium CG06_land_8_20_14_3_00_40_12


ncbi_organism_name: Proteus vulgaris

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Burn wound

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Oliverpabstia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Segatella copri


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC059144

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: California; Middletown

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Lab of Microbial Oceanography


ncbi_country: USA: NC

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: USA: California; Alameda County

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:the Yellow Sea

ncbi_isolation_source: plastic contamination samples

ncbi_organism_name: Bacillus sp. Y-01

ncbi_submitter: First Institute of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. Y-01


ncbi_assembly_name: freshwater MAG --- Ja_bin-1692

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: Northeast pacific open ocean

ncbi_organism_name: Candidatus Comchoanobacter bicostacola

ncbi_submitter: Monterey Bay Aquarium Research Instute

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Comchoanobacterales;f__Candidatus Comchoanobacteraceae;g__Candidatus Comchoanobacter;s__Candidatus Comchoanobacter bicostacola


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Switzerland

ncbi_organism_name: Campylobacter coli Z163

ncbi_submitter: Cornell University


ncbi_country: Germany

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_organism_name: uncultured Comamonas sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Schwartzia sp.


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P4 C A14

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Nigeria: Igboukwu

ncbi_isolation_source: sold in market

ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Igbk 8

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna


ncbi_organism_name: Listeria sp. ILCC796

ncbi_submitter: JUSTUS LIEBIG UNIVERSITY


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom: Wales; Carmarthen

ncbi_organism_name: Pyxidicoccus caerfyrddinensis

ncbi_submitter: Aberystwyth University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Kolkata

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Hungatella sp.


ncbi_isolation_source: vent. liquor

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: SRCAMB


ncbi_assembly_name: Rhodobacteraceae bacterium Water_Bin34

ncbi_isolation_source: Seawater

ncbi_organism_name: Rhodobacteraceae bacterium Water-Bin34

ncbi_submitter: Elham Karimi


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: midwestern states

ncbi_isolation_source: root/leaf

ncbi_organism_name: Microbacterium sp. lyk4-40-TSB-66

ncbi_submitter: University of Chicago


ncbi_country: Australia: Brisbane

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Yangzhou University


ncbi_country: Thailand

ncbi_isolation_source: the shrimp farm in eastern Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Nantong; jiangsu province

ncbi_isolation_source: a feces sample of chicken origin

ncbi_organism_name: Acinetobacter pseudolwoffii


ncbi_isolation_source: human gut

ncbi_organism_name: Lactobacillus helveticus


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Jinhua Central Hospital


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Kyung Hee University


ncbi_country: Ukraine

ncbi_isolation_source: Perianal swab

ncbi_submitter: MRSN BI Team


ncbi_country: USA: California

ncbi_isolation_source: crown gall

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Anhui

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Iranduba

ncbi_isolation_source: leaf litter

ncbi_organism_name: Spiroplasma sp.

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Zhengzhou

ncbi_isolation_source: urine

ncbi_submitter: Zhengzhou University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: uncultured Coriobacteriaceae bacterium


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: lettuce fields

ncbi_organism_name: Robertmurraya kyonggiensis

ncbi_submitter: The Third Institute of State Oceanic Administration


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFCSPHIGHO2_01_FULL_51_74


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Tuonamu area in Qiangtang basin

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Pseudomonas sp. QTF5

ncbi_submitter: Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences


ncbi_country: USA: PA

ncbi_isolation_source: Milk filter (dairy cow farm)

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces sp. NPDC052496

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Candidatus Krumholzibacteriia bacterium

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;x__unclassified Candidatus Krumholzibacteriia;s__Candidatus Krumholzibacteriia bacterium


ncbi_organism_name: Neglectibacter timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Agathobaculum sp.


ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Streptomyces sp. NBC_01537

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Actinomycetota bacterium


ncbi_country: Peru: Lima

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: NY

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: France

ncbi_isolation_source: lactic starter (for yoghurt making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1123

ncbi_submitter: Brigham Young University


ncbi_country: China:Inner Mongolia

ncbi_submitter: Inner Mongolia University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: JCVI


ncbi_country: Canada: Ontario

ncbi_isolation_source: tendon tissue

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Public Health Ontario


ncbi_isolate: Vran symbiont

ncbi_isolation_source: Vangueria randii leaf

ncbi_organism_name: uncultured Paraburkholderia sp.

ncbi_strain_identifiers: Vran symbiont

ncbi_submitter: inrae toulouse


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: South Africa: North West Province

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Agriculture research council


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: EBI


ncbi_organism_name: Xanthomonas hortorum pv. pelargonii

ncbi_strain_identifiers: WHRI 5649

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Thailand

ncbi_isolation_source: kurkuma root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: European Bioinformatics Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 247


ncbi_organism_name: Aequorivita sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Paracoccus broussonetiae

ncbi_submitter: Institute of Medicinal Biotechnology Chinese Academy of Medical Sciences


ncbi_organism_name: Corynebacterium riegelii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_isolation_source: faeces

ncbi_submitter: ISTITUTO SUPERIORE DI SANITA


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_country: USA

ncbi_submitter: University of Groningen


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: EMG


ncbi_country: USA:Rock County; Wisconsin

ncbi_isolation_source: Jack O Lantern-type pumpkin plants

ncbi_organism_name: Xanthomonas cucurbitae

ncbi_submitter: University of Illinois, Urbana-Champaign


ncbi_organism_name: Actinomyces johnsonii

ncbi_submitter: University of Malaya


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Bacteroidales bacterium Bact_13

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium Bact_13


ncbi_strain_identifiers: China

ncbi_submitter: KAUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis BCG


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Dongguan

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College London (UCL)


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella pallens

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Belgium

ncbi_submitter: Sciensano


ncbi_organism_name: Leptospira kirschneri

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: China

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium fredii

ncbi_submitter: Medicago Hapmap Project


ncbi_country: China: Huizhou

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: South China Agricultural University


ncbi_country: Viet Nam: Vung Tau

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Pasteur Institute of Ho Chi Minh City


ncbi_isolation_source: Terrestrial

ncbi_organism_name: Cyanobacteria bacterium FACHB-502

ncbi_submitter: South China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium FACHB-502


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Waterloo

ncbi_isolate: SO_2017_CLC bin 38

ncbi_isolation_source: leachate from a composite leachate cistern at an active municipal landfill in Southern Ontario

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_strain_identifiers: SO_2017_CLC bin 38

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: chicken caeca

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_country: Portugal: Aveiro

ncbi_isolation_source: Pus

ncbi_submitter: University of Aveiro


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- A-3_bin-053

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhizobium sp. SL86

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Zhejiang Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Ningxia

ncbi_submitter: Northwest A&F University


ncbi_country: USA: MO

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Corynebacterium pseudotuberculosis


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: comammox bioreactor

ncbi_organism_name: Nitrospira sp. CR1.1

ncbi_submitter: IWWR, RADBOUD UNIVERSITY


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. NW976

ncbi_submitter: Sichuan University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Cyanobacteria bacterium UBA1186

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium UBA1186


ncbi_organism_name: uncultured Draconibacterium sp.


ncbi_organism_name: Limnohabitans sp.

ncbi_submitter: The University of Texas at Austin


ncbi_assembly_name: freshwater MAG --- KTt_bin-0432

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_country: France: Lautaret

ncbi_isolation_source: Rain

ncbi_organism_name: Pseudomonas tremae

ncbi_submitter: University of Lille - ICV - UMRt BioEcoAgro


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shanghai

ncbi_isolation_source: raw milk products

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_submitter: University of Texas MD Anderson Cancer Center


ncbi_country: Russia: Astrakhan

ncbi_isolation_source: hot water systems

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Russian Research Anti-Plague Institute Microbe


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: marine

ncbi_organism_name: Fidelibacterota bacterium


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: food

ncbi_submitter: University of Zurich


ncbi_isolation_source: food processing environment

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: Italy

ncbi_isolation_source: feces

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Parma


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Linnaeus University


ncbi_submitter: Yangzhou University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3027

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3814

ncbi_submitter: University of Queensland


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pennsylvania


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: USA: New York

ncbi_isolation_source: onion from storage

ncbi_organism_name: Rahnella aceris

ncbi_submitter: University of the West of England


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Tongji University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: India

ncbi_isolation_source: Feces

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Brazil

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Russia: Republic of Tatarstan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: USA: Narragansett Bay; Rhode Island

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: University of Rhode Island


ncbi_isolation_source: environment


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: Xiamen University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_isolate: AOP42_E1_surf _bin _20

ncbi_organism_name: Aequorivita sp.

ncbi_strain_identifiers: AOP42_E1_surf _bin _20

ncbi_submitter: Genoscope


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium


ncbi_organism_name: Gallionella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Anaerolineaceae bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Germany

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: chongqing

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: MDR-CQE

ncbi_submitter: Chongqing People's Hospital


ncbi_submitter: Universtity Hospital Cologne


ncbi_organism_name: Escherichia coli 9B

ncbi_submitter: University Medical Center Utrecht


ncbi_assembly_name: GEN_BGC Atlantic-Pacific 2011 bin.357 MAG

ncbi_isolate: bin.357 MAG

ncbi_isolation_source: North Pacific

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_strain_identifiers: bin.357 MAG

ncbi_submitter: IDAEA-CSIC


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Clostridioides difficile CD175

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Shigella flexneri

ncbi_submitter: CDC


ncbi_organism_name: uncultured Defluviitaleaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Peptostreptococcaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Ralstonia edaphi

ncbi_submitter: LM-UGent


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: USA: Texas

ncbi_isolation_source: transedoscopic tracheal wash

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_country: USA: MI

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: SPRUCE 538

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 538

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)


ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Methylomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nitrospiraceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Streptomyces platensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium YH-ros2226

ncbi_submitter: ABS Research Support Center


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: Japan

ncbi_isolation_source: throat swab

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Harvard University


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: EMG


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Gemella sp.


ncbi_isolation_source: cold seep

ncbi_organism_name: Victivallales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_country: Austria: Vienna

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: Prochlorococcus sp. AG-315-B03

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Pakistan

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Haerbin

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CAU


ncbi_assembly_name: Salmonella enterica CVM N32781-SQ v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: South Korea: Jeollabuk-do

ncbi_isolation_source: Perilla leaf kimchi

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Probiotics Microbiome Convergence Center


ncbi_isolation_source: Cecal Young Turkey

ncbi_organism_name: Campylobacter coli

ncbi_strain_identifiers: CVM N51090F


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Mucilaginibacter sp. SG564

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Anaerosalibacter massiliensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Baltic Sea: Landsort Deep

ncbi_isolation_source: surface water

ncbi_organism_name: Hoeflea sp. BAL378

ncbi_submitter: Technical University of Denmark


ncbi_country: Zambia

ncbi_isolation_source: intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Switzerland

ncbi_isolation_source: Vaginal swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Bern


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Arenibacter amylolyticus

ncbi_submitter: Ocean University of China


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Chlorobiaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Rikenellaceae bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Neisseriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID8373

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Micromonospora sp. NPDC049101

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- MJ120924B_bin-104

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Tunisia

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Syntrophaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shanghai

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. fd1-xmd

ncbi_submitter: Fudan University


ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Escherichia coli 99.0678

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Rickettsia parkeri str. Portsmouth

ncbi_strain_identifiers: Portsmouth

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia parkeri;x__Rickettsia parkeri str. Portsmouth


ncbi_submitter: Institut Pasteur de Dakar


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Weihai

ncbi_organism_name: Virgibacillus salarius

ncbi_submitter: Shandong University in Weihai


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: South Africa

ncbi_isolation_source: Fresh Produce

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 1161

ncbi_submitter: University of Pretoria


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Photobacterium damselae subsp. piscicida

ncbi_submitter: Yantai University


ncbi_submitter: Food Science and Technology Institute, Morinaga Milk Industry Co., Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. animalis;x__Bifidobacterium animalis subsp. animalis MCC 1489


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: cecal contents

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_country: USA: KS

ncbi_isolation_source: porcine pig intestine

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Klebsiella sp. 125182

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: Tulelake California

ncbi_isolation_source: plant

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: USDA


ncbi_country: India

ncbi_organism_name: Xanthomonas campestris pv. obscurae

ncbi_strain_identifiers: NCPPB 3759

ncbi_submitter: University of Exeter

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: Canada: Vancouver

ncbi_organism_name: Aerococcaceae bacterium NML191219

ncbi_submitter: National Microbiology Laboratory, Public Health Agency of Canada


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse (Mus musculus)

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: China: Beijing

ncbi_submitter: China-Japan Friendship Hospital


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter baumannii 44362_1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Granulosicoccaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Atopobium sp. oral taxon 199 str. F0494

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;o__Coriobacteriales;f__Atopobiaceae;g__Atopobium;x__unclassified Atopobium;s__Atopobium sp. oral taxon 199;x__Atopobium sp. oral taxon 199 str. F0494


ncbi_country: Estonia

ncbi_isolation_source: drain discharge

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Toho university


ncbi_organism_name: Aeromonas piscicola

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0605

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: BILS


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA6445

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6445


ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Cellvibrio zantedeschiae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Ireland

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rubislaw


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0117


ncbi_assembly_name: assembly

ncbi_isolation_source: pigeon

ncbi_organism_name: Chlamydia avium

ncbi_submitter: IZSLER


ncbi_country: Brazil

ncbi_isolation_source: environmental

ncbi_organism_name: Paraclostridium bifermentans

ncbi_strain_identifiers: parabai

ncbi_submitter: Prof.


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Fusobacteriati;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Fusobacteriaceae;g__Fusobacterium;s__Fusobacterium necrophorum;sb__Fusobacterium necrophorum subsp. funduliforme;x__Fusobacterium necrophorum subsp. funduliforme ATCC 51357


ncbi_organism_name: Thalassococcus sp. BH17M4-6

ncbi_submitter: Zunyi Medical University


ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Arthrobacter citreus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. NPDC058051


ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Stutzerimonas chloritidismutans

ncbi_submitter: KAUST


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellales bacterium


ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Institut Pasteur, Universite Paris Cite


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Center for Biotechnology Information


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH