ncbi_organism_name: Streptomyces griseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Tagaea sp.

ncbi_submitter: Scottish Marine Association for Marine Science


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: University of Surrey


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacillus cereus group sp. BceL308

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL308


ncbi_organism_name: uncultured Halomicronema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_country: USA:California;La Jolla

ncbi_isolation_source: gut

ncbi_organism_name: Vibrio inusitatus NBRC 102082

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: University of Waterloo


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_level: Chromosome

ncbi_country: Turkmenistan: Bayramaly

ncbi_isolation_source: water of a drainage canal

ncbi_organism_name: Leptospira sp. GIMC2001

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Sphingomonadales bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: jejunum

ncbi_organism_name: Enorma phocaeensis

ncbi_submitter: Quadram Institutte


ncbi_country: Russia: Moscow

ncbi_isolation_source: biopsy of antral stomach region from European patient with peptic ucler and chronic gastritis disease

ncbi_organism_name: Helicobacter pylori A45

ncbi_submitter: Scientific Research Institute of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotella sp. UBA4249

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China:Nanjing; Zijing Mountain

ncbi_organism_name: Amycolatopsis sp. Hca4

ncbi_submitter: Nanjing University


ncbi_country: Canada: Guelph

ncbi_isolation_source: paw

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: IFSC USP


ncbi_organism_name: Actinospica sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: Oak Ridge National Lab

ncbi_organism_name: Pseudomonas moraviensis

ncbi_strain_identifiers: VanB

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Oslo


ncbi_country: China: Hebei province

ncbi_isolation_source: Baijiu fermentation starter

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Eubacteriales bacterium


gtdb_type_species_of_genus: t

ncbi_organism_name: Hansschlegelia plantiphila

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter cumulans

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Germany: Leipzig; Bienitz

ncbi_organism_name: Wolbachia endosymbiont of Nomada leucophthalma

ncbi_strain_identifiers: wNleu

ncbi_submitter: University of Liverpool


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Dehong

ncbi_isolation_source: nodule

ncbi_organism_name: Ensifer sesbaniae

ncbi_strain_identifiers: CCBAU 65729

ncbi_submitter: University of Firenze


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: New York

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Tolypothrix sp. PCC 7601

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: lake water

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Universidad del Desarrollo


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Shandong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Norway: Bergen

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O123:H11;x__Escherichia coli O123:H11 str. 2009C-3307


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Mogibacterium diversum

ncbi_submitter: EMG


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Dorea sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: Cecum

ncbi_organism_name: Corynebacterium stationis

ncbi_submitter: NCTR/FDA


ncbi_organism_name: Cellvibrio sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Desulfocapsaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Leptospirales bacterium


ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Philippines: Mindanao Island

ncbi_isolation_source: soil

ncbi_organism_name: Allokutzneria albata

ncbi_submitter: University of Illinois


ncbi_submitter: Quadram Institutte


ncbi_isolation_source: sputum

ncbi_submitter: JCVI


ncbi_isolation_source: oral cavity

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;x__unclassified Capnocytophaga;s__Capnocytophaga sp. oral taxon 380;x__Capnocytophaga sp. oral taxon 380 str. F0488


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas tremae

ncbi_submitter: NIAB East Malling Research


ncbi_country: Poland: Warszawa

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_assembly_name: Rumen uncultured genome RUG13565

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Paraglaciecola sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Bacillus sp. B2(2022)

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. B2(2022)


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMT2-17-1

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Haifa


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas lurida

ncbi_submitter: Walloon Agricultural Research Centre


ncbi_organism_name: Streptomyces sp. enrichment culture

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California

ncbi_submitter: USDA/ARS/WRRC/PSM


ncbi_organism_name: Serratia sp. FGI94

ncbi_submitter: UW-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. FGI94


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Flavobacterium bizetiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Vibrio splendidus

ncbi_submitter: University of Vienna


ncbi_organism_name: Mycoplasmopsis felis

ncbi_submitter: University of Guelph


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Estonia

ncbi_isolation_source: skin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Jonesiaceae bacterium BS-20

ncbi_submitter: University of Oklahoma


ncbi_country: China: Wujiaqu;Xinjiang

ncbi_isolation_source: food from retail market

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shihezi University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Dekas Lab, Stanford University


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Shandong

ncbi_isolation_source: fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: Provincial Hospital Affiliated to Shandong First Medical University


ncbi_country: Australia: Davies Reef

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: France

ncbi_organism_name: Helicobacter pylori B38

ncbi_submitter: Institut Pasteur


ncbi_country: Switzerland

ncbi_isolation_source: Skin groin

ncbi_organism_name: Macrococcoides canis

ncbi_submitter: University of Bern


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: Norway

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- Ki1-0-7m_bin-0755

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: South Korea: Kyonggi

ncbi_isolation_source: Doenjang; fermented soybeans

ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Dongduk Women's University


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University College Cork


ncbi_country: Belgium: Netherlands

ncbi_isolation_source: rectal swab

ncbi_submitter: University of Southampton


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Phascolarctobacterium sp. CAG:266

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Nocardia asteroides

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: retail store

ncbi_organism_name: Serratia nevei

ncbi_submitter: University of Georgia


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China

ncbi_organism_name: Dyadobacter beijingensis DSM 21582

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Spirosomataceae;g__Dyadobacter;s__Dyadobacter beijingensis;x__Dyadobacter beijingensis DSM 21582


ncbi_country: USA: Florida; Summerland Key

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Alloscillospira gallinarum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Alloscillospira;s__Candidatus Alloscillospira gallinarum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Alloscillospira;s__Candidatus Alloscillospira gallinarum


ncbi_organism_name: Kitasatospora sp. NPDC004723


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01381

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01381


ncbi_country: China: Beihai

ncbi_isolation_source: marine sediment ENVO_03000033

ncbi_organism_name: Ruegeria sp. YS9

ncbi_submitter: Fourth Institute of Oceanography, Ministry of natural resources


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Lung

ncbi_organism_name: Streptococcus suis


ncbi_country: Italy: PA Bolzano

ncbi_submitter: Azienda Sanitaria dell'Alto Adige


ncbi_country: Spain

ncbi_strain_identifiers: BGSC 4BU1

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar pirenaica


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: SA

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_isolation_source: wound or pus swab

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Germany

ncbi_isolation_source: lungs

ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Pseudomonas fluvialis

ncbi_submitter: Xiamen University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Antarctica: Western Antarctica; Livingston Island

ncbi_isolate: LIV bin1

ncbi_isolation_source: soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_strain_identifiers: LIV bin1

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: USA: FL Keys

ncbi_isolation_source: coral tissue

ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: NOAA/UM


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0250

ncbi_submitter: Broad Institute


ncbi_country: USA: NY

ncbi_isolation_source: bovine cow uterus

ncbi_submitter: FDA/CFSAN


ncbi_country: China:Agricultural Bio-Resources Research Institute; Fujian Academy of Agricultural Sciences; Fuzhou

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Pune

ncbi_isolation_source: urine sample from patient with Septicemia

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: Wheat grains

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 61:l,v:1,5,7


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: lake water

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Chloroflexota bacterium


ncbi_organism_name: Pantoea sp. EEL5

ncbi_submitter: Zhoukou Normal University


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Filifactor villosus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_submitter: ProteonPharmaceuticals

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Rhizobium sp. ST-5

ncbi_submitter: Korea Institute of Geoscience and Mineral Resources


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_organism_name: Escherichia coli

ncbi_submitter: instituto de investigaciones biologicas clemente estable


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_country: Spain: Mar Menor (Region de Murcia)

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Universidad de Alicante


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Parasphingorhabdus sp.


ncbi_assembly_name: IMG-taxon 2663762783 annotated assembly

ncbi_organism_name: Pseudomonas lutea

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Germany: Jena

ncbi_isolation_source: throat swab neonate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_assembly_name: freshwater MAG --- I-2_bin-106

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom

ncbi_isolation_source: Veterinary

ncbi_organism_name: Mammaliicoccus lentus

ncbi_submitter: University of Leeds


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AM49-4BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Candidatus Puniceispirillum sp.

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__unclassified Candidatus Puniceispirillum;s__Candidatus Puniceispirillum sp.


ncbi_country: Romania: Bucharest

ncbi_isolation_source: wastewater

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_assembly_name: Salmonella enterica CVM N48676 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Mariane sediment

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Wageningen Plant Research


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY HOSPITAL TUEBINGEN


ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EMG


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_assembly_name: IMG-taxon 2622736535 annotated assembly

ncbi_organism_name: Micromonospora sediminicola

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Xanthomonas sp. F10

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Sphingorhabdus sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Washington University School of Medicine


ncbi_country: South Korea: Wonju

ncbi_isolation_source: Chinese cabbage kimchi

ncbi_organism_name: Weissella confusa

ncbi_submitter: Gachon University


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_organism_name: Gemella bergeri ATCC 700627

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Gemellaceae;g__Gemella;s__Gemella bergeri;x__Gemella bergeri ATCC 700627


ncbi_organism_name: Bifidobacterium adolescentis ATCC 15703

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Gene 13

ncbi_submitter: Cairo University, Faculty of Medicine


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: uncultured Dubosiella sp.


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus intestinigallinarum


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Alberta


ncbi_organism_name: Leucobacter sp. NPDC077196

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Denmark: Lynetten

ncbi_isolation_source: activated sludge from Lyne_18-Q3-R50-59

ncbi_organism_name: Candidatus Obscuribacter sp.

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;f__Candidatus Obscuribacteraceae;g__Candidatus Obscuribacter;x__unclassified Candidatus Obscuribacter;s__Candidatus Obscuribacter sp.


ncbi_country: USA: Rochester; Minnesota

ncbi_isolation_source: Associated Infection

ncbi_submitter: The Mayo Clinic


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Volcanic Eifel; Andernach

ncbi_isolation_source: groundwater from cold water geyser; filtered on 0.1um pore size filters

ncbi_submitter: University Duisburg-Essen


ncbi_country: Mali

ncbi_submitter: SC


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Drexel


ncbi_country: USA: Virginia

ncbi_isolation_source: white-tailed deer feces

ncbi_organism_name: Pseudomonas sp. 13B_2.1_Bac1

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Malaysia

ncbi_isolation_source: waterfall

ncbi_organism_name: Pantoea rodasii

ncbi_submitter: UNIVERSITY OF MALAYA


ncbi_country: USA: FL; Tavernier

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Halomonas sp. OfavH-34-E

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: Dallas 124_1


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 149 - depth 10m

ncbi_organism_name: Erythrobacter sp. REDSEA-S28_B2

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangnan University


ncbi_isolate: AOP28_A2_surf _bin _23

ncbi_organism_name: Glutamicibacter arilaitensis

ncbi_strain_identifiers: AOP28_A2_surf _bin _23

ncbi_submitter: Genoscope


ncbi_organism_name: Nonomuraea sp. NPDC050790

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany

ncbi_isolation_source: marine microbial mat from the North Sea island of Mellum

ncbi_organism_name: Thiorhodovibrio frisius

ncbi_submitter: JGI


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Universite Laval


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_isolation_source: intestinal content

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: ChinaCDC


ncbi_country: Japan

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC059893


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Nocardia sp. NPDC002869


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Eawag


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Mesorhizobium carmichaelinearum

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: uncultured bacterium


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-927

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Flavobacterium columnare

ncbi_submitter: USDA


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Salmonella sp. NW268

ncbi_submitter: Sichuan University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: National Centre for Infectious Diseases


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Oceanococcus atlanticus

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7095

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: Microcoleus sp. F6_B5

ncbi_submitter: Palacky University Olomouc


ncbi_country: Peru: Lima

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: California; Eel River; Cedar Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR2032

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Holophagaceae bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Mycobacterium kansasii Z61

ncbi_country: China: Hangzhou

ncbi_isolation_source: pneumonia patient

ncbi_organism_name: Mycobacteroides abscessus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas granadensis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Thailand

ncbi_isolation_source: gall bladder

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Calgary


ncbi_organism_name: Janibacter sp. GS2

ncbi_submitter: Pukyong National University


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Institut Pasteur


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal mucosa

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: RWTH Aachen University Hospital


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA

ncbi_organism_name: Burkholderia sp. AU44665

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Pseudodesulfovibrio sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2490

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Primary rapid sand filter

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Radboud University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Hungary: Szeged biogas plant

ncbi_isolation_source: Anaerobic sludge from Szeged Biogas Plant

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Szeged


ncbi_organism_name: Candidatus Foliamicus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Foliamicales;f__Candidatus Foliamicaceae;g__Candidatus Foliamicus;x__unclassified Candidatus Foliamicus;s__Candidatus Foliamicus sp.


ncbi_organism_name: Nitrospirillum amazonense

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ginsengibacter sp.


ncbi_isolation_source: rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_country: Germany: Querenburg; Bochum

ncbi_isolation_source: wet mud

ncbi_organism_name: Dermacoccus nishinomiyaensis

ncbi_submitter: Ruhr University Bochum


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Mariprofundaceae bacterium

ncbi_submitter: GNS Science


ncbi_country: China

ncbi_isolation_source: lung

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter dublinensis

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_organism_name: Streptomyces sp. NPDC047123

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Poland: Radom

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: SAR86 cluster bacterium AG-390-O18

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium AG-390-O18


ncbi_organism_name: Herbaspirillum sp. RTI4

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: France: Rennes

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rennes 1


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Throat and nasal swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFCSPLOWO2_02_FULL_43_10


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Stanford University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_submitter: Prince of Songkla University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: CDC Prevention Epicenter Program


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas fulva;x__Pseudomonas fulva NBRC 16637 = DSM 17717


ncbi_organism_name: Acinetobacter sp. ACNIH3

ncbi_submitter: NIH


ncbi_country: China: Zhejiang

ncbi_isolation_source: farm environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: lamb

ncbi_organism_name: Clostridium algidicarnis

ncbi_submitter: University of Zurich


ncbi_country: Netherlands

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus paralicheniformis

ncbi_strain_identifiers: NCIMB 11709

ncbi_submitter: NIZO food research


ncbi_organism_name: Trebonia sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Terada and Riya Laboratory, Chemical Engineering, Depertment of Technology, Tokyo University of Agriculture and Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Streptomyces sp. NPDC017095

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Radboud University


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Pilimelia anulata

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Candidatus Caenarcanales bacterium

ncbi_submitter: Stockholm University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;c__Vampirovibriophyceae;o__Candidatus Caenarcanales;x__unclassified Candidatus Caenarcanales;s__Candidatus Caenarcanales bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of California at Davis


ncbi_country: Poland

ncbi_isolation_source: tuber

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Microbacterium sp. zg.B96

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: France: Neuville; Lake Fargette

ncbi_isolation_source: size-fractionated lake water incubated for 31 months

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: India

ncbi_isolation_source: soil

ncbi_organism_name: Serratia sp. AKBS12

ncbi_submitter: National Environmental Engineering Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. AKBS12


ncbi_organism_name: Yersinia alsatica

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Winkia neuii subsp. neuii DSM 8576

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Actinomycetales;f__Actinomycetaceae;g__Winkia;s__Winkia neuii;sb__Winkia neuii subsp. neuii;x__Winkia neuii subsp. neuii DSM 8576


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Photorhabdus laumondii subsp. laumondii


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter sp. S131434

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: South Korea: Jejudo

ncbi_isolation_source: Diseased olive flounder

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Pukyong National University


ncbi_country: China: Hunan

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Streptomyces sp. HUAS CX7

ncbi_strain_identifiers: HUAS CX7

ncbi_submitter: Hunan University of Arts and Science


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Selenomonas sp.


ncbi_organism_name: Capnocytophaga gingivalis


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Sneathiella sp.

ncbi_submitter: China University of Geosciences


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: JiangXi

ncbi_isolation_source: Navel orange rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Jiangxi University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: China CDC


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: India: Nipaniya kalan; Sehore road; Bhopal

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. BRP22

ncbi_submitter: university of Oxford


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_country: China: Shenzhen; Longhua

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: NC

ncbi_isolation_source: Pregnant woman

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: North Carolina State University


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_submitter: zhejiang University


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: A3 sorted

ncbi_submitter: Friendship Hospital, Capital Medical University


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Aquarium

ncbi_organism_name: Pseudoalteromonas shioyasakiensis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Blood culture

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: CHUV-UNIL


ncbi_isolation_source: marine mud

ncbi_organism_name: Vibrio gazogenes

ncbi_strain_identifiers: CECT 5068T

ncbi_submitter: UVEG


ncbi_organism_name: Aeromonas sp. s13

ncbi_submitter: Hangzhou CDC


ncbi_assembly_name: Rumen uncultured genome RUG14267

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Chifeng; Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Neobacillus sp. CF12

ncbi_submitter: Technical University of Denmark


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Streptomyces sp. NPDC012617

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Italy: Alessandria

ncbi_isolation_source: stool sample

ncbi_organism_name: Salmonella bongori

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0259

ncbi_submitter: University of Lausanne


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:St. Louis

ncbi_isolation_source: Breast

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: BIAI 157

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Colombia: Tuquerres

ncbi_isolation_source: gastric antrum biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: C75 site of Richmond Mine (elevation 3100ft) at Iron Mountain; CA

ncbi_isolation_source: pink acid mine drainage (AMD)-air interface biofilm; microbial community collected from a pool (about 0.8 m deep; about 5 m wide) of AMD solution at pH 0.7-1.2; Temperature=40-43C that slowly drained through a pyrite pile

ncbi_organism_name: Leptospirillum sp. Group II 'C75'

ncbi_submitter: University of California Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Leptospirillum;x__Leptospirillum sp. Group II;s__Leptospirillum sp. Group II 'C75'


ncbi_country: Colombia: Medellin

ncbi_isolation_source: lung

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Alianza científico - tecnológica Nucleosensor-TB


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured bacterium

ncbi_submitter: the hong kong university of science and technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTsouthwestern Medical Center


ncbi_organism_name: Candidatus Azotimanducaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bartonella sp. AA1HLJMS

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- Umea3_bin-1144

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Paraburkholderia strydomiana

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Streptomyces sediminimaris

ncbi_submitter: Mahidol University


ncbi_assembly_name: wTurt

ncbi_isolate: NM

ncbi_organism_name: Wolbachia endosymbiont of Tetranychus urticae

ncbi_strain_identifiers: NM


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Jiangsu

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: Slovenia: Kopivnik 13; 2313 Fram

ncbi_isolation_source: apple cider vinegar

ncbi_organism_name: Komagataeibacter melaceti

ncbi_submitter: Faculty of Natural Sciences and Mathematics


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Anaerotignum faecicola


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Russia: Taman Peninsula

ncbi_isolation_source: terrestrial mud volcano

ncbi_organism_name: Petrocella sp. FN5

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: Rumen uncultured genome RUG13029

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Denitrobacterium sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Iceland: Krysuvik

ncbi_isolation_source: geothermal spring

ncbi_strain_identifiers: Ice

ncbi_submitter: University of Bergen

ncbi_taxonomy: d__Bacteria;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;g__Methylacidiphilum (ex Ratnadevi et al. 2023);s__Candidatus Methylacidiphilum fumarolicum


ncbi_country: India: Yenagandla; Medak; Telangana

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium herbae

ncbi_submitter: IUNFC


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: USA: Washington

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: UW


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Turkey

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: CAU Kiel


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: China: Shanghai

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Gallintestinimicrobium propionicum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Vagina

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_country: France: Paris

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: Arizona

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Arizona


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_isolation_source: aspirate gallbladder

ncbi_organism_name: Staphylococcus sp. HMSC075A04

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Iran

ncbi_isolation_source: salt lake

ncbi_organism_name: Aquibacillus halophilus

ncbi_submitter: Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Marine research


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Pseudomonas extremaustralis

ncbi_submitter: Colorado State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Winogradskyella aquimaris

ncbi_submitter: Winogradskyella aqurima KCTC 23502


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Watershed Function Science Focus Area

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: Sputum of Homo sapiens

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Thailand

ncbi_isolation_source: Canal


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_name: IMG-taxon 2671180033 annotated assembly

ncbi_organism_name: Pseudomonas delhiensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India

ncbi_isolation_source: Soil sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptomyces sp. NBC_01210

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: China: Tianjin

ncbi_isolation_source: Drill cuttings

ncbi_organism_name: Aquamicrobium defluvii

ncbi_submitter: Tianjin University


ncbi_country: China: Taiwan;Kueishan Island

ncbi_isolation_source: hydrothermal vent sediment

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Shanghai Ocean University


ncbi_organism_name: Streptomyces sp. NBC_01267


ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Ethiopia: Oromiya; Arisi; Shirka

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: United Kingdom

ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_isolation_source: embryos

ncbi_organism_name: Wolbachia endosymbiont of Drosophila yakuba

ncbi_submitter: Uppsala University


ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: South Africa: King Dinuzulu Hospital

ncbi_isolation_source: sputum

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Shamba


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_country: China: Guangzhou

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium sp. SA916


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Scarlet fever

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_name: De novo assembly of KCRI isolate R0008_242

ncbi_isolation_source: sputum sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: China:Hubei; Enshi

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_country: Germany: Hamburg

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_organism_name: Escherichia coli O111:H8 str. CVM9602

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:H8;x__Escherichia coli O111:H8 str. CVM9602


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Veterinary Science, Chulalongkorn University


ncbi_organism_name: Microcystis aeruginosa NIES-3807

ncbi_submitter: Nanjing Agriculture University


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Symbiobacterium sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: China

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: University of Florida


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Universidad de Costa Rica


ncbi_isolate: AOP28_A2_surf _bin _18

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP28_A2_surf _bin _18

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Evtepia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Evtepia;x__unclassified Evtepia;s__Evtepia sp.


ncbi_organism_name: Enterobacter cloacae complex sp. 288G10

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 288G10


ncbi_organism_name: uncultured Rhodobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of the Philippines Manila


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Deinococcaceae bacterium

ncbi_submitter: University of South Africa


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: uncultured Desulfurellales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: (MES) mesopelagic zone

ncbi_organism_name: SAR202 cluster bacterium

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__unclassified SAR202 cluster;s__SAR202 cluster bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: healthy adult 3C

ncbi_organism_name: Firmicutes bacterium CAG:321_26_22

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:321_26_22


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Italy: Tuscany; Siena

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Siena


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University of Auckland


ncbi_organism_name: Staphylococcus aureus VET1860R

ncbi_submitter: Broad Institute


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: the seqafrica consortium


ncbi_country: Switzerland

ncbi_isolation_source: Robiola

ncbi_submitter: Agroscope


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Paenacidovorax monticola

ncbi_submitter: Kyung Hee University


ncbi_country: USA: California; Point Lobos

ncbi_isolation_source: marine sediment

ncbi_organism_name: Micromonospora sp. RL09-050-HVF-A

ncbi_submitter: Simon Fraser University


ncbi_country: Denmark: Central Denmark

ncbi_isolation_source: root nodule of Trifolium repens growing with Lolium perenne in an organic farm field

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Aarhus University


ncbi_country: China: Guangxi; Dachang

ncbi_isolation_source: sediment

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_isolation_source: marine water sample

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Case Western Reserve University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Bovine bulk tank milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Rice roots

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of Tromso


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 24812_2

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Guangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: ST11 CRKP17

ncbi_submitter: PLA Southern Theater General Hospital


ncbi_isolation_source: gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Atlantibacter hermannii


ncbi_country: Germany: Hesse

ncbi_isolation_source: Rainbow trout

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: intestines

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_assembly_name: freshwater MAG --- KT4_bin-019

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Belgium: Univ. Bruxelles

ncbi_organism_name: Enterococcus faecalis EnGen0105

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFCSPHIGHO2_01_FULL_54_22


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: Australia: Adelaide Hills; SA

ncbi_isolation_source: feces


ncbi_country: China

ncbi_isolation_source: water

ncbi_organism_name: Deinococcus sp. NW-56

ncbi_submitter: Microbiology Chinese Academy of Science


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Switzerland: Berne

ncbi_isolation_source: Broiler at slaughter

ncbi_organism_name: Helicobacter pullorum NCTC 12824

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Spain

ncbi_isolation_source: Hospital Universitario La Princesa (Madrid)

ncbi_submitter: CNAG-CRG


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0331


ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium pseudocatenulatum


ncbi_isolation_source: stool

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: India: Assam

ncbi_isolation_source: Cow Milk

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Haiti

ncbi_organism_name: Vibrio cholerae O1 str. 2010EL-1786

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2010EL-1786


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom: York

ncbi_isolation_source: Independently evolved isolated clone of PA01 co-cultured with S. maltophilia 8 g/ml treated Synthetic Cystic Fibrosis Media for 24 days

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Warwick


ncbi_country: South Africa: Cape Town; Upper Campus of University of Cape Town

ncbi_isolation_source: Soil

ncbi_organism_name: Kribbella speibonae

ncbi_submitter: University of Cape Town


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Paracoccus denitrificans


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Distal colon


ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: KO

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: Spain: Asturias; Tito Bustillo Cave

ncbi_isolation_source: Cave wall

ncbi_organism_name: Streptomyces sp. TBY4

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Spyradomonas excrementavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy: d__Bacteria;p__;c__;o__;f__;g__Candidatus Spyradomonas;s__Candidatus Spyradomonas excrementavium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Spyradomonas;s__Candidatus Spyradomonas excrementavium


ncbi_country: Netherlands

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1161

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Streptococcus agalactiae MRI Z1-023

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: puncture fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CONICET-CEMIC


ncbi_country: Sweden

ncbi_isolation_source: feces from a healthy human

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_strain_identifiers: Bir 348


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: France

ncbi_isolation_source: cheese rind

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_submitter: INRA


ncbi_country: China: Zhengzhou

ncbi_isolation_source: blood

ncbi_submitter: First Affiliated Hospital of Zhengzhou University


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudomonas sp. MOIL14HWK12:I1

ncbi_submitter: JGI


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: bile

ncbi_submitter: University of Bern


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Ralstonia thomasii

ncbi_submitter: INRAE


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Synergistota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Paraclostridium bifermentans

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Micromonospora aurantiaca (nom. illeg.)

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces hygroscopicus


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Anoxybacteroides rupiense

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Senegalimassilia sp.


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical College


ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: South Korea: Daegu

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Animal and Plant Quarantine Agency


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Superficial Swab

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Oribacterium sp.


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai