ncbi_country: Czech Republic: Zlate Hory

ncbi_isolation_source: Gold Mining

ncbi_organism_name: Acidithiobacillus ferridurans

ncbi_submitter: Fundacion Ciencia y Vida


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: CFBP 5253

ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_strain_identifiers: CFBP 5253

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_assembly_level: Scaffold

ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: Germany: Kiel

ncbi_isolation_source: artificial sea water

ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: Heinrich-Heine University Duesseldorf


gtdb_representative: t

ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Weimeria sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Weimeria;x__unclassified Candidatus Weimeria;s__Candidatus Weimeria sp.


ncbi_organism_name: Kitasatospora sp. NPDC127059

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolate: SPRUCE 221

ncbi_organism_name: Terracidiphilus sp.

ncbi_strain_identifiers: SPRUCE 221

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Maricaulis maris

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CollaBio Genomics and Bioinformatics Solutions


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Candidatus Aphodocola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Aphodocola;x__unclassified Candidatus Aphodocola;s__Candidatus Aphodocola sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium RIFOXYA12_FULL_40_10


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ST_Warwick 404;ST_Pasteur 6;TTBI6

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: tracheal secretion

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes communis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Rickettsiales bacterium

ncbi_submitter: EBI


ncbi_country: Italy

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter cuniculorum;x__Campylobacter cuniculorum DSM 23162 = LMG 24588

ncbi_type_material_designation: assembly from type material


ncbi_country: Kenya: Nairobi

ncbi_isolation_source: vaginal swab sample

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: Loyola University Chicago


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_level: Complete Genome

ncbi_country: USA: VT

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_assembly_name: IMG-taxon 2622736509 annotated assembly

ncbi_organism_name: Myroides guanonis

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: California

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Ralstonia mannitolilytica

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_assembly_level: Chromosome

ncbi_assembly_name: IMG-taxon 2636416065 annotated assembly

ncbi_organism_name: Pseudomonas arsenicoxydans

ncbi_strain_identifiers: CECT 7543


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China: Fujian; Longyan

ncbi_isolation_source: Zijin gold and copper mine

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica


ncbi_organism_name: Salipiger bermudensis

ncbi_submitter: Tang lab


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: Urine Kidney ASP

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University


ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: BGI


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Turkey: Yomra

ncbi_isolation_source: spleen

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Malaysia: Kuala Pangsun village

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterocloster sp. OA11

ncbi_submitter: New York University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pontixanthobacter sp.

ncbi_submitter: McGill University


ncbi_country: Germany

ncbi_strain_identifiers: CVUAS 11463

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Aphanizomenon flos-aquae NRERC-008

ncbi_submitter: National Institute of Environmental Research


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Lysinibacillus pakistanensis


ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Melioribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhumadian

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces triticiradicis

ncbi_submitter: School of life science


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_assembly_name: freshwater MAG --- MJ4_bin-227

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China:Liaoning Province

ncbi_isolation_source: shellfish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: USA: Ohio

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Photobacterium swingsii

ncbi_strain_identifiers: CECT 7576

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: China: Zhanjiang

ncbi_isolation_source: anal swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Greece

ncbi_isolation_source: liver

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Hellenic Agricultural Organization Demeter


ncbi_country: China:Guiyu town of Guandong

ncbi_isolation_source: main river that flows through Guiyu town

ncbi_organism_name: Rhodococcus pyridinivorans

ncbi_strain_identifiers: YC-MTN

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4353

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4353


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France: Grignon

ncbi_isolation_source: bulk soil

ncbi_organism_name: Brucella grignonensis

ncbi_submitter: Intercollegiate Faculty of Biotechnology UG&MUG


ncbi_country: USA: Portland; ME

ncbi_isolation_source: Kombucha tea culture

ncbi_organism_name: Komagataeibacter nataicola

ncbi_submitter: Worcester Polytechnic Institute


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: California; Eel River

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_09_SFU_O_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_organism_name: Verrucomicrobiota bacterium


ncbi_organism_name: Sharpea porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University Hospital Frankfurt


ncbi_country: South Korea: Changwon

ncbi_isolation_source: Tuberculosis Patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: International Tuberculosis Research Center


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mitsuokella jalaludinii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-213

ncbi_submitter: Broad Institute


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: China: Guangdong; Shenzhen

ncbi_isolate: DF

ncbi_organism_name: Candidatus Cardinium sp.

ncbi_strain_identifiers: DF

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Amoebophilaceae;g__Candidatus Cardinium;x__unclassified Candidatus Cardinium;s__Candidatus Cardinium sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW306-02-F02-AB

ncbi_submitter: Arkin Lab


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Bangladesh: Chittagong

ncbi_isolation_source: Borhani

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: CU


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Vicinamibacteria bacterium


ncbi_organism_name: Acidaminococcus fermentans

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. NW110

ncbi_submitter: Sichuan University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Streptomyces wedmorensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Lanzhou University


ncbi_isolate: CP

ncbi_organism_name: Dehalobacter sp. CP

ncbi_submitter: Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Vibrio alfacsensis

ncbi_submitter: Shandong university


ncbi_country: Mozambique

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: urban industrial factory reactor residue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Fudan University


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater effluent

ncbi_submitter: CEITEC VETUNI


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: US; NY

ncbi_isolation_source: Respiratory culture

ncbi_organism_name: Staphylococcus aureus DAR1199

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes putredinis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parvimonas micra


ncbi_submitter: North South University


ncbi_isolation_source: faecal

ncbi_organism_name: Klebsiella michiganensis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Zurich


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter typhlonius


ncbi_country: USA: Michigan

ncbi_isolation_source: obtained from ARS culture collection

ncbi_organism_name: Micromonospora arborensis

ncbi_strain_identifiers: NRRL 8041

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Arthrobacter sp. NtRootA2

ncbi_submitter: Research Institute for Sustainable Humanosphere (RISH), Kyoto University


ncbi_assembly_name: Rumen uncultured genome RUG14613

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_assembly_name: freshwater MAG --- A3_bin-239

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Geobacteraceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 5-63 micron fraction

ncbi_organism_name: Vibrio tasmaniensis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Uruguay: Rio Negro; Nuevo Berlin

ncbi_isolation_source: root nodule[PO:0003023]

ncbi_organism_name: Paenibacillus farraposensis

ncbi_submitter: Instituto de Investigaciones Biologicas Clemente Estable (IIBCE-MEC)


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Tokyo Medical and Dental University


ncbi_organism_name: Thioalkalivibrio sp. ALE19

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Aerococcus urinae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Bipolaricaulis anaerobius

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Polystyrene-feeding group superworm feces

ncbi_organism_name: Pediococcus sp.

ncbi_submitter: The University of Queensland


ncbi_country: Ecuador: Quito

ncbi_isolation_source: blood

ncbi_organism_name: Serratia sp. 4542

ncbi_submitter: Universidad El Bosque

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. 4542


ncbi_organism_name: Brevundimonas sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China

ncbi_organism_name: Adlercreutzia sp. ZJ305

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium GW2011_GWF1_38_22


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Clostridium sp. M62/1

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong University


ncbi_country: Brazil

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;s__Candidatus Taylorbacteria bacterium RIFCSPHIGHO2_01_FULL_46_22b


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: University of Birmingham


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii 44467_3

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Escherichia coli O174:H8 str. 04-3038

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O174:H8;x__Escherichia coli O174:H8 str. 04-3038


ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Sulfopaludibacter sp. SbA3

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Sulfopaludibacter;x__unclassified Candidatus Sulfopaludibacter;s__Candidatus Sulfopaludibacter sp. SbA3


ncbi_country: Atlantic Ocean: Bermuda Atlantic Time Series BATS

ncbi_isolation_source: seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Germany: Koln

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Micromonospora sonchi

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: CHU de Bicetre


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H18808

ncbi_submitter: Broad Institute


ncbi_country: USA: PA

ncbi_isolation_source: bovine spleen

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Rhizobium sp. BK275

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Serratia marcescens

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Candidatus Binataceae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;x__unclassified Candidatus Binataceae;s__Candidatus Binataceae bacterium


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Pirellulaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_strain_identifiers: ESI123-pBACpAK-16bp-3Prime-D1 ON 18

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Micromonospora echinaurantiaca

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Serratia sp. CY54717

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY54717


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Iowa State University


ncbi_organism_name: Streptomyces sp. NPDC001282


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Erythrobacter sp. Dej080120_24

ncbi_submitter: Plant Environmental Microbiology Group, Institute of Plant Science and Resources, Okayama University


ncbi_organism_name: Streptococcus sp. HMSC034F02

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_name: freshwater MAG --- YR3_bin-0589

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: bacterium UBP8_UBA7816

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP8_UBA7816


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_isolation_source: feces

ncbi_submitter: University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: BSN92 Closure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Soochow University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Paenibacillus sp. FSL L8-0494

ncbi_submitter: Penn State


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Achromobacter arsenitoxydans SY8

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC005969

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Germany: North-Rhine; Westfalia

ncbi_isolation_source: Female patient blood

ncbi_submitter: University of Lausanne


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of South Florida


ncbi_country: Kenya

ncbi_organism_name: Lachnospiraceae bacterium UBA5895

ncbi_submitter: University of Queensland


ncbi_organism_name: Xylanibacter rodentium


ncbi_country: China:An Hui; Wu Hu

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus sp. AH-ZY2

ncbi_submitter: Zhejiang University of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. AH-ZY2


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Anaerotruncus;s__Anaerotruncus massiliensis (ex Togo et al. 2019)


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Dalian

ncbi_isolation_source: BALF

ncbi_organism_name: Virgibacillus dakarensis

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: Empedobacter falsenii


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D7_bin-0125

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Sciensano

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Serinicoccus chungangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Colombia: Medellin

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Corporacion para Investigaciones Biologicas and J Craig Venter Institute


ncbi_country: Czech Republic: University Hospital Brno

ncbi_isolation_source: wound swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: SCOPE


ncbi_country: Brazil: Recife

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Streptomyces sp. NBC_00704

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_organism_name: Roseburia hominis


ncbi_submitter: Nanjing Drum Tower Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: Rumen uncultured genome RUG13137

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: PMEN

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Stahliibacteriota bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Stahliibacteriota;x__unclassified Candidatus Stahliibacteriota;s__Candidatus Stahliibacteriota bacterium


ncbi_submitter: University of Bern


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: Spain: Valencia

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio agarivorans

ncbi_strain_identifiers: CAIM 1911

ncbi_submitter: CIAD, A.C.


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: household water source

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Leuconostoc lactis


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Copenhagen


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qinghai Tibet Plateau

ncbi_isolation_source: Sichuan Red Original Yak Yogurt

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Southwest University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_country: Brazil

ncbi_isolation_source: rhizosphere soil from sugare cane field

ncbi_organism_name: Pseudomonas sp. R14(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: China

ncbi_organism_name: Sulfitobacter sp. S190

ncbi_submitter: Ocean University of China


ncbi_organism_name: Neolewinella marina

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: North Carolina

ncbi_isolation_source: feces

ncbi_submitter: Gusto Global LLC

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Bittarella (ex Durand et al. 2017);s__Bittarella massiliensis (ex Durand et al. 2017)


ncbi_organism_name: Acidothermaceae bacterium


ncbi_assembly_name: freshwater MAG --- YR_bin-2505

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chryseobacterium gleum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: South Korea: Jeongseon-gun

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter jeongseonensis

ncbi_submitter: Seoul Women's University


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus sp. DIV0609

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillus cereus group sp. MYBK30-2

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK30-2


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_submitter: ICDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_organism_name: Clostridium fessum


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Atopococcus sp.

ncbi_submitter: University of Minnesota


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leiden University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: Germany: Federal Republic of Eckendorf

ncbi_organism_name: Pseudomonas syringae pv. coriandricola

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. coriandricola

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Arsenicicoccus cauae

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_country: South Korea: Gangwha Island; Incheon

ncbi_isolation_source: rhizosphere mud of a halophyte

ncbi_organism_name: Martelella lutilitoris

ncbi_submitter: BioPS Co., Ltd.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Candidatus Onthomorpha sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Onthomorpha;x__unclassified Candidatus Onthomorpha;s__Candidatus Onthomorpha sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: University of Oldenburg


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: Minneapolis

ncbi_submitter: Virginia commonwealth university, Richmond VA, USA


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Enteractinococcus sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Streptococcus salivarius


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Thermoanaerobaculum sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: USA: Alsea Valley; Benton Co.; OR

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: USDA


ncbi_country: Spain: Cantabria

ncbi_isolation_source: Altamira cave wall

ncbi_organism_name: Streptomyces sp. APSN-46.1

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_isolation_source: Soft-skin infection or carrier

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Geogentics


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Streptomyces sp. Tu 2975

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Oligoflexales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Cellulophaga lytica

ncbi_submitter: IBET


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: AIMST University


ncbi_country: China: Beijing

ncbi_isolation_source: animal manure

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Chinese Academy of Science


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: United Kingdom

ncbi_isolation_source: Bulk milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


gtdb_type_species_of_genus: t

ncbi_organism_name: Autumnicola musiva

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Xinjiang

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_assembly_name: IMG-taxon 2675903131 annotated assembly

ncbi_organism_name: Halobacillus aidingensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: United Kingdom: London

ncbi_organism_name: Acinetobacter baumannii W6976

ncbi_submitter: University of Birmingham


ncbi_country: USA: PA; Montoursville; Loyalsock Creek

ncbi_isolation_source: freshwater creek

ncbi_organism_name: Flavobacteriaceae bacterium JJC

ncbi_strain_identifiers: JJC

ncbi_submitter: GCAT-SEEK


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Bartonella sp. AC326YNZD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_isolation_source: nasal

ncbi_submitter: Johns Hopkins Bloomberg School of Public Health


ncbi_country: Norway

ncbi_isolation_source: environmental

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Aeromonas sp. R4-3

ncbi_submitter: Hangzhou CDC


ncbi_organism_name: Salmonella sp. NW170

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- Umea_bin-04856

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_submitter: University of Trento


ncbi_isolation_source: tomato

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Universidade de Sao Paulo


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: Sudan: Khartoum; Al-Braha Hospital

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Brighton and Sussex Medical School


ncbi_organism_name: Caulobacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Guangdong

ncbi_isolation_source: liver

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Streptomyces haneummycinicus

ncbi_submitter: Tokyo University of Marine Science and Technology


ncbi_organism_name: Bacillus cereus group sp. MYBK30-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK30-1


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of Chicago


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_01_FULL_55_79


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: Chile

ncbi_isolation_source: Powdered infant formula

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: Streptococcus pneumoniae 1974M1-LZD

ncbi_submitter: Université Laval


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Agroscope


ncbi_country: China: Fujian

ncbi_isolation_source: bloodstream

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Tagaea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- MJ130916B_bin-104

ncbi_organism_name: uncultured Gordonia sp.

ncbi_submitter: BILS


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Actinotignum sp. GS-2025c

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Ottowia sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Azotimanducaceae bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Gallimonas sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;x__unclassified Candidatus Gallimonas;s__Candidatus Gallimonas sp.


ncbi_country: Australia: Roxby Downs

ncbi_isolation_source: Topsoil from arid and minimally vegetated gibber plain

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Synechococcus sp. UW140

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Thailand

ncbi_isolation_source: salted fermented fish

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Chulalongkorn

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Coprenecus stercoravium

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;x__Rikenellaceae incertae sedis;g__Candidatus Coprenecus;s__Candidatus Coprenecus stercoravium


ncbi_submitter: National Institute for Communicable Disease


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Washington


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope


ncbi_country: Lebanon

ncbi_isolation_source: Fecal Matter1

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: United Kingdom: Glasgow

ncbi_isolation_source: Laboratory reference strain

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Bath


ncbi_organism_name: Lachnospiraceae bacterium 47-T17

ncbi_submitter: Nanjing University


ncbi_country: USA: Maine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolate: metabat2_6737_HOM_CTRL_hifiasm.628 MAG

ncbi_organism_name: Barnesiella viscericola

ncbi_strain_identifiers: metabat2_6737_HOM_CTRL_hifiasm.628 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Hong Kong

ncbi_isolation_source: anoxic ACE-degrading consortia enriched using acesulfame as the sole carbon source with nitrate as the electron acceptor in anaerobic condition; seeded with activated sludge sampled from Sha Tin WWTPs

ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Austria: Vienna

ncbi_isolation_source: whole DNA extracted from Drosophila simulans line RC50 eggs

ncbi_organism_name: Wolbachia pipientis

ncbi_submitter: Western Sydney University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NT

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: University of Bern


ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Streptomyces asoensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Nocardiopsis dassonvillei


ncbi_country: France: Poitiers

ncbi_isolation_source: blood culture

ncbi_submitter: INSERM


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: USA: New York State

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil suspension

ncbi_organism_name: Mucilaginibacter terrigena

ncbi_submitter: Kyungpook National University


ncbi_organism_name: uncultured Terrisporobacter sp.


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Biomin Research Center


ncbi_isolation_source: cold seep

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_assembly_name: IMG-taxon 2703719265 annotated assembly

ncbi_organism_name: Bacillus sp. JKS001846

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. JKS001846


ncbi_country: Brazil: Acre; Tarauac

ncbi_isolation_source: tissue sample

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter atlanticus subsp. cyclopteri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Carnobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1473

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_country: USA: WA

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Porphyromonas sp.


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;s__Acinetobacter bouvetii;x__Acinetobacter bouvetii DSM 14964 = CIP 107468


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of South Africa


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Nasopharygneal lavage

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Chryseobacterium arthrosphaerae

ncbi_strain_identifiers: TV

ncbi_submitter: Istituto Zooprofilattico Sperimentale della Puglia e della Basilicata


ncbi_isolate: Aquibacillus massiliensis

ncbi_organism_name: Sediminibacillus massiliensis

ncbi_strain_identifiers: Aquibacillus massiliensis

ncbi_submitter: URMITE


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: IL

ncbi_isolation_source: Organic Soy

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Mycolicibacter heraklionensis

ncbi_submitter: JCVI


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_submitter: Toho University


ncbi_submitter: University of Pittsburgh


ncbi_country: Italy: Salerno

ncbi_isolation_source: lymph node

ncbi_organism_name: Brucella abortus

ncbi_submitter: IZSM-Portici


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Antarctica: Scott Base

ncbi_isolation_source: oil-contaminated soil

ncbi_organism_name: Sphingobium sp. Ant17

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: uncultured Mesonia sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Aggregatibacter aphrophilus NJ8700

ncbi_submitter: American Museum of Natural History


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: Computational Biology and Microbial Ecology


ncbi_country: France: Durance river; Sisteron

ncbi_isolation_source: river

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: Sorbonne University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_organism_name: Streptomyces sp. NPDC088166

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__environmental samples;s__uncultured candidate division Zixibacteria bacterium


ncbi_organism_name: Patescibacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NPDC059970


ncbi_organism_name: Reyranella sp.


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: KAUST


ncbi_country: USA

ncbi_isolation_source: wound

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Jiangellaceae bacterium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Treponema sp. UBA778

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_organism_name: Paraglaciecola sp. T6c

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Suzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Suzhou Hospital of Traditional Chinese Medicine


ncbi_country: France

ncbi_isolation_source: Milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Puerto Rico: JUNCOS

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter bouvetii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Epagoge grotiana


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Streptococcus rupicaprae


ncbi_country: USA: Hawaii

ncbi_isolation_source: Goat rumen

ncbi_organism_name: Synergistes jonesii

ncbi_submitter: CSIRO


ncbi_organism_name: Alloprevotella tannerae


ncbi_assembly_name: Escherichia coli CVM N37067PS v. 1.0

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N37067PS

ncbi_submitter: FDA


ncbi_country: Thailand: Phitsanulok

ncbi_submitter: Cardiff University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hanzhong Central Hospital


ncbi_country: Switzerland: Grimselpass; pond Gri1

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. UK-Gri1-W3

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Pseudoalteromonas sp. 3-MNA-CIBAN-0064

ncbi_submitter: University of Florence


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: IZLSLER


ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


ncbi_country: China

ncbi_isolation_source: secretion

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Fenyang college of shanxi medical university


ncbi_organism_name: Prescottella equi

ncbi_submitter: Animal Hygiene, Kitasato University School of Veterinary Medicine


ncbi_isolation_source: human skin

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Dorea sp. BIOML-A1

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Erasmus University Medical Center


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: Urine

ncbi_strain_identifiers: STp 7;Oneg:H12;STw 23;NILS34:C;Urine

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Switzerland

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Zurich


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides caccae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cyanobium sp. ELA507

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Ascites sample

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Broiler parent82

ncbi_submitter: University of Copenhagen


ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_country: China: Guizhou

ncbi_isolation_source: rhizosphere of Lolium perenne L. on a rock phosphorus mine

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Jiangnan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0158

ncbi_submitter: Broad Institute


ncbi_country: USA: University of Nebraska-Lincoln

ncbi_isolation_source: whole bodies

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Nebraska-Lincoln


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Madagascar

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_country: Gambia

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: USA

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Smithella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mesorhizobium opportunistum

ncbi_submitter: Washington State University


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Chile

ncbi_isolation_source: egg poultry

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany

ncbi_organism_name: Corynebacterium silvaticum

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 8953

ncbi_submitter: University of Exeter


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6576

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: University of Waterloo


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Ureibacillus sp. FSL W7-1570

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Ureibacillus;x__unclassified Ureibacillus;s__Ureibacillus sp. FSL W7-1570


ncbi_country: Switzerland: St Gallen

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate stock bioreactor

ncbi_organism_name: Microbacterium sp. 70-16

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: KAUST


ncbi_organism_name: Hominenteromicrobium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Capital Institute of Pediatrics


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;x__environmental samples;s__uncultured Candidatus Competibacteraceae bacterium


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Streptomyces sp. NPDC058298

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Parma


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Pseudomonas syringae pv. tagetis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 7;x__Pseudomonas syringae pv. tagetis


ncbi_isolate: SPRUCE 529

ncbi_organism_name: Minisyncoccia bacterium

ncbi_strain_identifiers: SPRUCE 529

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: China: Wuhu Polymetallic Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Rhizobium sp. NPDC092014


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Louisiana

ncbi_isolation_source: oysters

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Northwestern University


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_organism_name: bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_organism_name: Tetragenococcus halophilus subsp. halophilus

ncbi_strain_identifiers: NISL 7128

ncbi_submitter: Genome Research Center, NODAI Research Institute, Tokyo University of Agriculture


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: freshwater MAG --- MJ120827A_bin-224

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_country: South Korea

ncbi_isolation_source: marine saltern

ncbi_organism_name: Jeotgalibacillus salarius

ncbi_submitter: institute of microbiology,chinese academy of sciences


ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Sanvira Biosciences Pvt Ltd


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mediterranea sp.

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Pseudoalteromonas sp. UBA6610

ncbi_submitter: University of Queensland


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Faculty of Applied Biological Sciences, Gifu University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_country: Japan

ncbi_organism_name: Enterobacter sp. KINAN-G

ncbi_strain_identifiers: KINAN-G

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomic Center, National Institute of Infectious Diseases


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: Nostril sample

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: unknown


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Kansas State University


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Bangladesh: Laksam

ncbi_isolation_source: arsenic-impacted human gut samples taken from 10 individuals over 4 consecutive days

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_isolation_source: Proximal colon


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Italy

ncbi_isolation_source: sputum; cystic fibrosis

ncbi_organism_name: Burkholderia latens

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Peptostreptococcus sp.


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EBI


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium CG23_combo_of_CG06-09_8_20_14_all_37_19


ncbi_country: Denmark: Aarhus; Maarslet

ncbi_isolation_source: nephridia

ncbi_organism_name: Verminephrobacter aporrectodeae subsp. tuberculatae

ncbi_submitter: Aarhus University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: INRA


ncbi_country: China: Fujian

ncbi_isolation_source: Fruiting bodies

ncbi_organism_name: [Pantoea] beijingensis

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Mexico: Cuatro Cienegas; Coahuila

ncbi_isolation_source: water sample

ncbi_organism_name: Vibrio sp. V01_P9A10T6

ncbi_submitter: Instituto de ecologia


ncbi_isolation_source: River

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA54644

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_isolation_source: coastal sediment

ncbi_organism_name: Seonamhaeicola maritimus

ncbi_submitter: Insititute of Oceanology, Chinese Academy of Sciences


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from bioreactor treating oxytetracycline bearing wastewater

ncbi_organism_name: Aeromonas media

ncbi_submitter: Research center for Eco-environmental Sciences, Chinese Academy of Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Propionimicrobium lymphophilum

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_organism_name: Sinorhizobium medicae WSM419

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Polymorphospora rubra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_organism_name: Heyndrickxia sporothermodurans

ncbi_submitter: USDA-ARS-NCAUR