ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Pig Farm

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of KwaZulu-Natal


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: India: Kerala; Thiruvananthapuram; Trivandrum Medical College; Chalakkuzhi

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfobulbaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: USA: NC

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;s__Candidatus Uhrbacteria bacterium CG_4_10_14_3_um_filter_41_21


ncbi_country: USA: Boston

ncbi_isolation_source: SWAB

ncbi_organism_name: Escherichia coli BIDMC 63

ncbi_strain_identifiers: BIDMC 63

ncbi_submitter: Broad Institute


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_submitter: The ithree institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Metaclostridioides mangenotii

ncbi_submitter: EMG


ncbi_country: Gambia

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Algeria: Constantine

ncbi_isolation_source: Tracheal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MEPHI, IRD, APHM, IHU-Mediterranee Infection, Marseille, France


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Succinatimonas sp. UBA7726

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3986

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Oceanicoccus sp.

ncbi_submitter: University of East Anglia


ncbi_submitter: University of Galway


ncbi_submitter: Yangzhou university


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhizobium sp.


ncbi_organism_name: Streptomyces sp. NPDC059382

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudoxanthomonas spadix

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Peking University Third Hospital


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: terrestrial

ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Raoultibacter sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolate: Fecal samples

ncbi_isolation_source: CEREMI

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Fecal samples


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Day2-3_bin-370

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Bacteroides galacturonicus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Thermoanaerobaculales bacterium

ncbi_submitter: Chinese Academy of Sciences, Institute of Microbiology


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: California; Eel River; Red Mountain Creek

ncbi_isolation_source: river cyanobacterial mat

ncbi_organism_name: Microcoleus sp. PH2017_31_RDM_U_A

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Cyanobium sp. NAT70

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Paenibacillus sp. MER 180

ncbi_strain_identifiers: MER 180

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;x__unclassified Paenibacillus;s__Paenibacillus sp. MER 180


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Peptoniphilaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Puerto Rico: Maunabo

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia sp. Bp9017

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: EPFL


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_assembly_name: freshwater MAG --- LaPlata-15m-b_bin-341

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_country: China: Chifeng

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B3-1-9

ncbi_submitter: Curtin University


ncbi_organism_name: Phocaeicola plebeius DSM 17135

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Phocaeicola;s__Phocaeicola plebeius;x__Phocaeicola plebeius DSM 17135


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4567_28 depth 0-3 cm

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Rothia mucilaginosa

ncbi_submitter: The Ohio State University College of Dentistry


ncbi_country: Peru

ncbi_isolation_source: respiratory

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: rumen

ncbi_organism_name: bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


gtdb_type_species_of_genus: t

ncbi_country: Austria

ncbi_isolation_source: choanae

ncbi_organism_name: Chelonobacter oris

ncbi_refseq_category: reference genome

ncbi_submitter: University of Copenhagen

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Actinacidiphila glaucinigra

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-3321

ncbi_organism_name: uncultured Francisellaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Borreliella garinii

ncbi_submitter: LMU Munich


ncbi_country: USA: Farm from Cypress; Texas

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University of Houston


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater under a natural surface slick

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Linnaeus University


ncbi_organism_name: Schleiferiaceae bacterium


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Uganda: Kasese

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Health Canada


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 21 after weanning

ncbi_organism_name: Megasphaera sp.

ncbi_submitter: University of Alberta


ncbi_assembly_name: IMG-taxon 2574179727 annotated assembly

ncbi_organism_name: Alysiella filiformis DSM 16848

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Leuconostoc holzapfelii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_organism_name: Ruminococcus intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_isolation_source: skin

ncbi_organism_name: Mycobacterium colombiense

ncbi_submitter: Nanjing Drum Tower Hospital, the Affiliated Hospital of Nanjing University Medical School


ncbi_country: Poland: Poznan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella spallanzanii

ncbi_submitter: National Medicines Institute


ncbi_assembly_name: Rumen uncultured genome RUG12304

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: WA

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Washington


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- Loclat_bin-19690

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Germany

ncbi_organism_name: Flavobacterium denitrificans DSM 15936


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Enterococcus faecalis EnGen0367

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Christensenella sp. UBA3857

ncbi_submitter: University of Queensland


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Puia sp.


ncbi_country: China: Qingdao

ncbi_submitter: Shandong University


ncbi_assembly_level: Chromosome

ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Fudan University


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: caecum of adult hen

ncbi_organism_name: Mediterranea sp. ET5

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA:New York; CentralBronx

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Sweden

ncbi_isolation_source: VSK

ncbi_organism_name: Mycobacterium tuberculosis BTB11-299


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Plesiomonas sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: Staphylococcus shinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacteroides sp. KG156

ncbi_submitter: University of Florida


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: University of Lincoln


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Decomposition


ncbi_organism_name: Filifactor alocis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Jiliang University


ncbi_organism_name: Streptomycetes sp. LZZY-S3

ncbi_submitter: Liuzhou Polytechnic University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Paraburkholderia sp.

ncbi_submitter: Montana State University


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University Hospital Basel


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Enterobacter cloacae complex sp. LZL002

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. LZL002


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1710

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: bovine feces

ncbi_organism_name: Clostridium sp. CF011

ncbi_submitter: University of Zurich


ncbi_organism_name: Corynebacterium bovis

ncbi_submitter: OsloMet


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Australia

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Statens Serum Institut


ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: IMG-taxon 2617270824 annotated assembly

ncbi_organism_name: Flagellimonas flava

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: Intestinimonas butyriciproducens

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: Biomin Research Center


ncbi_country: South Korea: Jeju

ncbi_isolation_source: tree sap

ncbi_organism_name: Rouxiella aceris

ncbi_submitter: BioPS Co., Ltd.


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Brigham and Women s Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa BWH031

ncbi_submitter: Broad Institute


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Micavibrio aeruginosavorus


ncbi_country: Canada: Saskatchewan

ncbi_organism_name: Mannheimia bovis

ncbi_submitter: University of Saskatchewan


ncbi_country: USA: St. Louis; Missori

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Washington University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacter fastidiosus

ncbi_submitter: EMG


ncbi_isolation_source: swab ear

ncbi_organism_name: Gulosibacter hominis

ncbi_submitter: University Hospital Basel


ncbi_country: Canada: Nunavut

ncbi_isolation_source: high Arctic cold saline sulfur spring anaerobic sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: McGill University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Unknow

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC051665

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Ponticaulis sp.


ncbi_country: Venezuela: Distrito Capital; Municipio Libertador; Caracas

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: USA: TX

ncbi_isolation_source: feces psittacine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acinetobacter sp. 796380-1375

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;x__unclassified Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter sp. 796380-1375


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_country: Australia: Capella

ncbi_isolation_source: Pool

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China

ncbi_organism_name: Sinorhizobium fredii CCBAU 25509

ncbi_strain_identifiers: CCBAU 25509

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Sinorhizobium;x__Sinorhizobium fredii group;s__Sinorhizobium fredii;x__Sinorhizobium fredii CCBAU 25509


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Breoghania sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Colombia

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. CIO1


ncbi_organism_name: Nitrosomonadales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus durans

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Lethbridge Research Centre


ncbi_country: Nigeria

ncbi_isolation_source: blood

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Johns Hopkins University


ncbi_isolation_source: lake water

ncbi_organism_name: Paracoccaceae bacterium


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Acinetobacter schindleri


ncbi_organism_name: Escherichia coli

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Guangxi

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: hospital sample

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yongchuan Hospital of Chongqing Medical University


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hangzhou

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Duodenibacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: pickled cabbage

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lactiplantibacillus;s__Lactiplantibacillus plantarum;sb__Lactiplantibacillus plantarum subsp. plantarum;x__Lactiplantibacillus plantarum subsp. plantarum ATCC 14917 = JCM 1149 = CGMCC 1.2437


ncbi_organism_name: Vogesella oryzagri

ncbi_submitter: Chung-Ang University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Comamonadaceae bacterium UBA2334

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Acidithiobacillus sp.


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Sulfurovum sp. UBA6815


ncbi_country: USA: Bethesda

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces gulbargensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Marinobacter persicus


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Tannerella forsythia

ncbi_submitter: University of Leicester


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Pakistan

ncbi_isolation_source: dairy Farm

ncbi_submitter: Institute of microbiology University of Agriculture Faisalabad


ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Deep-Sea Bioresource Research Group , Research Center for Bioscience and Nanoscience (CeBN), Japan Agency for Marine-Earth Science and Technology (JAMSTEC)


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B148;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Philippines: Verde Island

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-0484

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: Clemson University


ncbi_country: USA: Chicago; Illinois

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Candidatus Spyradocola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Spyradocola;x__unclassified Candidatus Spyradocola;s__Candidatus Spyradocola sp.


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus pernyi

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_organism_name: Segatella copri


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Vircell S.L.


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWF2_41_9

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWF2_41_9


ncbi_country: Uganda: Stanley glacier

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Xanthobacter sp. V7C-4

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Pasteur institute of Tunisia


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Belgium: Merelbeke

ncbi_strain_identifiers: LMG 695

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. dieffenbachiae;x__Xanthomonas phaseoli pv. dieffenbachiae LMG 695

ncbi_type_material_designation: assembly from pathotype material


ncbi_country: USA: New York

ncbi_isolation_source: milk

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cornell University


ncbi_country: China

ncbi_isolation_source: patient

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0103

ncbi_submitter: Broad Institute


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: Rumen uncultured genome RUG13169

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Hamadaea sp. NPDC051192

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-1928

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Germany

ncbi_isolation_source: cucumber

ncbi_organism_name: Serratia nematodiphila

ncbi_submitter: Max Rubner-Institut


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 75 year old man who was hospitalized in ICU

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_country: Ghana

ncbi_isolation_source: food

ncbi_organism_name: Acetobacter fabarum

ncbi_submitter: Ghent University


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Lilbub from private home

ncbi_organism_name: Blautia sp.

ncbi_submitter: AnimalBiome


ncbi_country: USA: MA; Boston

ncbi_organism_name: Escherichia coli


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Gainesville

ncbi_isolation_source: gut

ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: University of Florida


ncbi_organism_name: Cyanobium gracile UHCC 0281

ncbi_strain_identifiers: UHCC 0281

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA

ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Iowa State University


ncbi_country: Canada: Ormstown; Quebec

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_country: China: Maanshan

ncbi_isolation_source: pork

ncbi_organism_name: Proteus alimentorum

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pandoraea sputorum

ncbi_submitter: Hubei Provincial Center for Disease Control and Prevention


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Corynebacterium glyciniphilum

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: China: Hangzhou

ncbi_isolation_source: ascitic fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_assembly_name: Rumen uncultured genome RUG11108

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: meat

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Comamonadaceae bacterium CG2_30_60_41

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: Colorado State University


ncbi_country: USA:Washington:Hanford 300 Area; IFRC

ncbi_isolation_source: ground water

ncbi_organism_name: Caulobacteraceae bacterium UBA5005

ncbi_submitter: University of Queensland


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: 1st assembly

ncbi_isolation_source: food

ncbi_organism_name: Enterococcus faecium UC8668

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Prevotella sp. UBA6383


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: China

ncbi_isolation_source: cabbage leaves

ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: JN

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Candidatus Phosphoribacter baldrii

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276


ncbi_organism_name: Phenylobacterium sp.


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Nepal

ncbi_isolation_source: Lentils nodule

ncbi_organism_name: Rhizobium sp. NZLR5

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Belgium: Wallonia

ncbi_submitter: University of Liege


ncbi_organism_name: Agrobacterium pusense


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Segatella salivae

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas mucidolens

ncbi_submitter: CEBITEC


ncbi_country: Russia

ncbi_isolation_source: spleen

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium


ncbi_organism_name: Oscillospiraceae bacterium CM18GR_63

ncbi_submitter: University of Trento


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Bradyrhizobium sp. LMG 9283

ncbi_submitter: IRD


ncbi_organism_name: Escherichia coli

ncbi_submitter: University College Cork


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV194

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Singapore

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium sp. MSK185

ncbi_submitter: Duke University


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Streptomyces wedmorensis


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Ocean University of China - Yushan Campus


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas sp. Pseusp3

ncbi_submitter: North Carolina State University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Candidatus Onthovicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Onthovicinus;x__unclassified Candidatus Onthovicinus;s__Candidatus Onthovicinus sp.


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-0165

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: Thailand: Udon Thani

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_isolation_source: hydrothermal area

ncbi_organism_name: Caloranaerobacter ferrireducens

ncbi_submitter: 329 lab


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Taiwan: Taipei

ncbi_isolation_source: intraabdominal abscess

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Taipei Veterans General Hospital and National Yang-Ming University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud - Peru

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Escherichia coli 38.34

ncbi_submitter: University Medical Center Utrecht


ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Acinetobacter colistiniresistens

ncbi_submitter: CHUAC (Centro Hospitalario Universitario de A Coruna)/INIBIC (Instituto Biomedico de A Coruna)


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: MD

ncbi_isolation_source: Dietary Supplement

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: USFDA


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: France: Aquitaine

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Cutibacterium acnes HL036PA1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Joint Genome Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Glaciecola sp. SC05

ncbi_submitter: Shandong University at Weihai


ncbi_country: USA: North Carolina

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 41

ncbi_strain_identifiers: CHS 41

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 41


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: SC


ncbi_country: Australia: Queensland

ncbi_isolation_source: Layer chicken liver; farm

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Genomic Research Laboratory, GRL; Geneva University Hospital, HUG


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bosea thiooxidans

ncbi_submitter: Biology Centre CAS


ncbi_country: Sweden: Karlshamn

ncbi_isolation_source: water

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Uppsala University


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Brucella abortus C-550

ncbi_isolation_source: blood

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Candidatus Bipolaricaulis anaerobius

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;c__Candidatus Bipolaricaulia;o__Candidatus Bipolaricaulales;f__Candidatus Bipolaricaulaceae;g__Candidatus Bipolaricaulis;s__Candidatus Bipolaricaulis anaerobius


ncbi_assembly_name: freshwater MAG --- MJ-2014-D2_bin-0684

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Tepidiformaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Canada: Quebec

ncbi_organism_name: Enterobacter sp. Res13-Sevr-PEC09-47

ncbi_submitter: Government of Canada


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_country: China: Guizhou

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: Pathogenomics Lab/LAU


ncbi_submitter: MRSN BI Team


ncbi_country: South Korea

ncbi_isolation_source: river

ncbi_organism_name: Flavihumibacter rivuli

ncbi_submitter: Inha University


ncbi_assembly_name: IMG-taxon 2700988701 annotated assembly

ncbi_organism_name: Chryseobacterium contaminans

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Australia: Western Australia; Roebuck Bay

ncbi_submitter: Federation University Australia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hvittingfoss


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Denmark

ncbi_isolation_source: Milk

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Chr. Hansen


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Blautia hydrogenotrophica DSM 10507

ncbi_submitter: Washington University Genome Sequencing Center


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: wound

ncbi_submitter: Monash University


ncbi_organism_name: Balneola sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_assembly_name: Rumen uncultured genome RUG14935

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Desulfocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: ADPUS

ncbi_submitter: NISC - NIH Intramural Sequencing Center


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21310


ncbi_country: China

ncbi_isolation_source: wastewater from WWTP

ncbi_submitter: Shandong University


ncbi_country: USA: Fort Sam; Houston

ncbi_organism_name: Escherichia coli

ncbi_submitter: Miami University


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: NewmanDt

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: diabetic foot ulcer sample 4

ncbi_organism_name: Corynebacterium sp. LK14

ncbi_submitter: UPenn


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Alteromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Puerto Rico: Mayaguez

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia stagnalis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Brazil: Santos

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Faeces

ncbi_organism_name: Shigella sonnei


ncbi_country: USA: Phoenix

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Porticoccus sp.


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: uncultured Candidatus Cloacimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__environmental samples;s__uncultured Candidatus Cloacimonas sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Brazil: Blumenau

ncbi_submitter: LNCC


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus loyolae

ncbi_submitter: Loyola University Chicago


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Botswana: Makadikadi Basin

ncbi_isolation_source: saltpan

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Lund University


ncbi_organism_name: Megamonas funiformis


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: California

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 41

ncbi_submitter: USDA-ARS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Streptomyces sp. NPDC056192

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Hong Kong: Telegraph Bay

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_country: USA: Seymour; Indiana

ncbi_organism_name: Microbacterium sp. K24

ncbi_submitter: Central Michigan University


ncbi_organism_name: Lactobacillus gasseri


ncbi_organism_name: Pseudomonas soli

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Chlamydia gallinacea

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Honghe

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Lactobacillus sp. B3795

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: Innovative Genomics Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas sp. FSL R10-1350

ncbi_submitter: Cornell University


ncbi_organism_name: Escherichia coli O104:H4 str. Ec11-9941

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O104:H4;x__Escherichia coli O104:H4 str. Ec11-9941


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_name: freshwater MAG --- Umea_bin-02404

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Thermomonas carbonis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Peru:Jaen; Santo Domingo de la Capilla; Chamana

ncbi_organism_name: Yersinia pestis PY-03

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Georgia


ncbi_country: China: Guangdong; Yunfu

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Paenibacillus pini JCM 16418

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus pini;x__Paenibacillus pini JCM 16418


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Escherichia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides caecimuris


ncbi_country: Peru:Trujillo; Salaverry; ENAPU

ncbi_organism_name: Yersinia pestis PY-65


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Back swab

ncbi_organism_name: Microbacterium paraoxydans

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Japan

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K4-38

ncbi_submitter: Institute of Marine research


ncbi_isolation_source: derived from human gut metagenome

ncbi_submitter: DTU


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: aquatic

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Streptomyces sp. NBC_01324

ncbi_submitter: Technical University of Denmark


ncbi_isolate: Pectobacterium versatile A197-S18-M16

ncbi_isolation_source: fresh water

ncbi_organism_name: Pectobacterium versatile

ncbi_strain_identifiers: Pectobacterium versatile A197-S18-M16

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: USA: Massachusetts; Cambridge

ncbi_organism_name: Deinococcus radiopugnans ATCC 19172


ncbi_country: USA:Las Vegas

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Paenibacillus sp. JCM 9795

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;x__unclassified Paenibacillus;s__Paenibacillus sp. JCM 9795


ncbi_organism_name: Escherichia coli

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_organism_name: Planktothrix agardhii

ncbi_submitter: Justus Liebig Universitat


ncbi_country: France

ncbi_organism_name: Borreliella spielmanii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Honduras: Cortes; San Pedro Sula

ncbi_isolation_source: Endobronchial tube

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liege


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: South Korea: Yellow Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Hanstruepera ponticola

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Daviesiibacteriota;s__Candidatus Daviesbacteria bacterium GW2011_GWA2_40_9


ncbi_country: China: South China Sea

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Germany: Jena

ncbi_isolation_source: rectal swab neonate

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jena University Hospital


ncbi_isolation_source: marine

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Candidatus Epilinea brevis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Epilineales;f__Candidatus Epilineaceae;g__Candidatus Epilinea;s__Candidatus Epilinea brevis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Epilineales;f__Candidatus Epilineaceae;g__Candidatus Epilinea;s__Candidatus Epilinea brevis


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 21134;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Brevibacillus sp. 179-C8.1 HS

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Geminicoccaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: PARUL UNIVERSITY


ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: Cornell University


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wyoming


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Bradymonadia bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Pseudomonas sp. NY11226

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_strain_identifiers: NA 4

ncbi_submitter: Hospital de Clinicas de Porto Alegre


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF36-3BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF36-3BH


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: LpWF-ShortReadAssembly

ncbi_submitter: Carnegie Institution for Science


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Streptococcus sp. K0074

ncbi_submitter: Kyungpook National University


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Patient urine

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Selenomonadales bacterium


ncbi_country: Spain: Linares

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


ncbi_organism_name: Paraclostridium sordellii


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_submitter: JiLin Agriculture Science and Technology University


ncbi_isolation_source: human stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8863

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Switzerland

ncbi_submitter: University of Fribourg


ncbi_organism_name: uncultured bacterium


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Duncaniella sp.

ncbi_submitter: University of Queensland


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: Chile: Retiro; Maule

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Universidad Santo Tomas

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_country: Italy

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Polytechnic University of Marche Medical School


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Stockholm University


ncbi_assembly_name: IMG-taxon 2599185308 annotated assembly

ncbi_organism_name: Pseudomonas sp. NFACC17-2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Prescottella agglutinans

ncbi_submitter: College of Resources and Environmental science


ncbi_country: China: Shandong

ncbi_submitter: China agricultural university


ncbi_country: Australia: Australian Institute of Marine Science

ncbi_isolation_source: seawater

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Marinobacter sp. DS40M8

ncbi_submitter: University of Southern California


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_country: Netherlands: Oosterschelde estury; Oosterschelde/East

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Uppsala University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Legionellaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nankai University


ncbi_country: China: Shanghai

ncbi_isolation_source: lavage fluid

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: James Cook University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Zytex Biotech Pvt Ltd

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_submitter: Wellcome Sanger Institute


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Thiotrichaceae bacterium UBA7359

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Cronobacter sakazakii E899

ncbi_submitter: FDA


ncbi_country: Canada: British Columbia

ncbi_isolation_source: 8-m water column from Mahoney Lake

ncbi_organism_name: delta proteobacterium ML8_F1

ncbi_submitter: University of Cincinnati

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__delta proteobacterium ML8_F1


ncbi_assembly_name: Rumen uncultured genome RUG11250

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Netherlands

ncbi_organism_name: Phaeovulum veldkampii DSM 11550

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Intestine

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Arhus

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_organism_name: Subdoligranulum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Sweden

ncbi_isolation_source: lymph galnd

ncbi_organism_name: Mycobacterium tuberculosis BTB06-467

ncbi_submitter: Broad Institute


ncbi_country: Mexico: Mexico city

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_isolation_source: human gut

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Coprovicinus avistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Microvirga sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Microbacterium paraoxydans

ncbi_submitter: Universidad Popular Autonoma del Estado de Puebla


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ GmbH


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_assembly_name: Pseudopaeobacter sp. EL27

ncbi_isolate: Pseudopaeobacter sp. strain EL27

ncbi_isolation_source: Gorgonian coral

ncbi_organism_name: Pseudophaeobacter sp. EL27

ncbi_strain_identifiers: Pseudopaeobacter sp. strain EL27

ncbi_submitter: Instituto Superior Tecnico


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale


ncbi_country: USA: IL

ncbi_isolation_source: whey protein concentrate

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: surface water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Microgenomatus sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;g__Candidatus Microgenomatus;x__unclassified Candidatus Microgenomatus;s__Candidatus Microgenomatus sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: Pseudomonas syringae pathovar atrofaciens GM 2231

ncbi_organism_name: Pseudomonas syringae pv. atrofaciens

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. atrofaciens


ncbi_organism_name: Sphingomonas sp. MM-1

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Helicobacter hepaticus


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Argentina

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Hangzhou

ncbi_isolation_source: drainage fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_assembly_name: uncultured Planktomarina sp. SW01_Bin10

ncbi_isolation_source: seawater

ncbi_submitter: iBB-IST


ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Burkholderia sp. 22PA0106

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: College of Animal Science and Technology


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolate: SPRUCE 86

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_strain_identifiers: SPRUCE 86

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: uncultured Pirellulaceae bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hangzhou Nuclear Xinjian Biopharmaceutical (Group) Co., Ltd


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: SponGES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Botswana

ncbi_isolation_source: nasal swab from healthy carrier

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Tennessee


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Saccharimonadia bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;x__unclassified Candidatus Saccharimonadia;s__Candidatus Saccharimonadia bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 2; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: India

ncbi_isolation_source: Lung

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: cBio Corp


ncbi_country: Norway

ncbi_isolation_source: larvae

ncbi_organism_name: Buttiauxella sp. 3AFRM03

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: China: Qinghai Province

ncbi_isolation_source: trachea

ncbi_organism_name: Aerococcaceae bacterium zg-252

ncbi_submitter: China CDC


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE