ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: EMG


ncbi_assembly_level: Complete Genome

ncbi_country: Poland: Bialowieza National Park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: University of Bialystok


ncbi_organism_name: Nonomuraea guangzhouensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


gtdb_representative: t

ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Microbacterium sp. NPDC012755

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces sp. 058-1L

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Evtepia gabavorous


ncbi_organism_name: Rothia dentocariosa

ncbi_submitter: The Ohio State University College of Dentistry


ncbi_organism_name: Kitasatospora sp. NPDC088160


ncbi_submitter: Tibet Agricultural and Animal Husbandry College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0836

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Institut de Physique du Globe de Paris


ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: KAUST


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Tunisia

ncbi_organism_name: Serratia marcescens

ncbi_submitter: ANSES


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: USA: St. Louis

ncbi_isolation_source: Connective tissue

ncbi_organism_name: Acinetobacter courvalinii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Vibrio sp. Vb2131

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Emory University School of Medicine


ncbi_country: Australia: Ayr

ncbi_isolation_source: agricultural soil

ncbi_organism_name: candidate division TM6 bacterium SOIL31

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__candidate division TM6 bacterium SOIL31


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Desulfobulbaceae bacterium UBA4056


ncbi_country: South Africa: THABO MOFUTSANYANA; Free State Province

ncbi_isolation_source: Cows Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: South Korea: Daehwa stream

ncbi_isolation_source: freshwater

ncbi_organism_name: Flavobacterium rivulicola

ncbi_refseq_category: reference genome

ncbi_submitter: Inha University


ncbi_isolation_source: sand

ncbi_organism_name: Bacillus safensis

ncbi_strain_identifiers: NRRL BD-160

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: South Africa: North-West

ncbi_isolation_source: distribution water from treated drinking water production facilities

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: North-West University


ncbi_country: China: Yunnan; Mushu village

ncbi_organism_name: Yersinia pestis

ncbi_strain_identifiers: LJMS

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity, Beijing , China


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UMCG Groningen


ncbi_organism_name: Helicobacter ganmani


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Alberta


ncbi_organism_name: Bosea sp. BIWAKO-01

ncbi_submitter: Akita Prefectural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. BIWAKO-01


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: Saint-Louis Hospital


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Senegalimassilia anaerobia

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_organism_name: Collinsella sp.

ncbi_submitter: AAFC


ncbi_country: Nigeria: Anyigba

ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura sp. WAC 06369

ncbi_submitter: McMaster University


ncbi_country: France: Paris

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: YIK

ncbi_submitter: University Hospital of Besancon


ncbi_isolate: Alteromonas macleodii BGP6

ncbi_isolation_source: alginate-supplemented microcosm

ncbi_organism_name: Alteromonas macleodii

ncbi_strain_identifiers: Alteromonas macleodii BGP6

ncbi_submitter: Institute for Chemistry and Biology of the Marine Environment


ncbi_isolation_source: gut

ncbi_organism_name: Kandleria vitulina

ncbi_submitter: University of Queensland


ncbi_organism_name: Polymorphobacter sp.

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_country: China: Henan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital, Zhejiang University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Malacoplasma sp.

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: profound head ulcers of farmed Murray cod

ncbi_organism_name: Pseudomonas piscis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: bile

ncbi_organism_name: Pseudomonas sp. 18081308

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: Austria

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: France

ncbi_isolation_source: whey (Emmental)

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 2104

ncbi_submitter: Brigham Young University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: USA: Ohio

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_submitter: BGI-Shenzhen


ncbi_country: Costa Rica

ncbi_isolation_source: wastewater

ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Leptolyngbya sp. FACHB-161

ncbi_submitter: South China Normal University


ncbi_organism_name: uncultured Massilimicrobiota sp.

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Pune

ncbi_isolation_source: Probiotic Sachet

ncbi_submitter: Agharkar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium animalis;sb__Bifidobacterium animalis subsp. lactis;x__Bifidobacterium animalis subsp. lactis BB-12


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_submitter: China Medical University


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Rhodovibrionaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: China: Hainan

ncbi_organism_name: Streptococcus sp. X16XC17

ncbi_submitter: Jinan University


ncbi_organism_name: Alloalcanivorax xenomutans

ncbi_submitter: Third Institute of Oceanography


ncbi_country: Finland: Lake Mekkojarvi

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter paludilacus

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Nostocaceae cyanobacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada

ncbi_isolation_source: dairy animal

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Memorial University of Newfoundland


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Ethiopia: Oromia; North Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Candidatus Egerieimonas faecigallinarum

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Egerieimonas;s__Candidatus Egerieimonas faecigallinarum


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Indiana

ncbi_isolation_source: Clinical

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Bartonella alsatica

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_strain_identifiers: Gottschalk 19247

ncbi_submitter: The J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;s__Streptococcus agalactiae;x__Streptococcus agalactiae str. Gottschalk 19247


ncbi_genome_category: derived from single cell

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Bigelow Laboratory For Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_isolation_source: metagenome

ncbi_organism_name: Geobacter sulfurreducens

ncbi_submitter: University of Queensland


ncbi_assembly_name: Rumen uncultured genome RUG11877

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Xanthomarina gelatinilytica

ncbi_submitter: Ocean University of China


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_B3

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: uncultured Litorilinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolate: AOP35_05H_surf _bin _1

ncbi_organism_name: Actinomycetaceae bacterium

ncbi_strain_identifiers: AOP35_05H_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Dakarella massiliensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured PS1 clade bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__environmental samples;s__uncultured PS1 clade bacterium


ncbi_organism_name: Salmonella sp. LSP 40/00

ncbi_submitter: University of Oviedo


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Kansas State University


ncbi_country: South Korea: Jeju island

ncbi_isolation_source: sediment of junction between the ocean and a freshwater spring

ncbi_organism_name: Alteraurantiacibacter aquimixticola

ncbi_submitter: Sungkyunkwan University


ncbi_isolation_source: unknown

ncbi_organism_name: Clostridioides difficile


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H47139

ncbi_submitter: Broad Institute


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_country: USA

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_country: Romania

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Japan

ncbi_isolation_source: honey

ncbi_organism_name: Paenibacillus lactis

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_assembly_name: IMG-taxon 2593339134 annotated assembly

ncbi_organism_name: Methylomagnum ishizawai

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia

ncbi_submitter: SC


ncbi_country: China: Shanghai

ncbi_isolation_source: heart

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. SHSN006


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Paenibacillus polysaccharolyticus

ncbi_submitter: INRS


ncbi_isolation_source: Surfaces of food processing equipments

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Alphaproteobacteria bacterium PA2

ncbi_submitter: CNRS-AMU


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Anaerotruncus colihominis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Portugal: Porto

ncbi_isolation_source: pork meat

ncbi_organism_name: Acinetobacter portensis

ncbi_submitter: University of Gothenburg - CCUG


ncbi_isolation_source: lake water

ncbi_organism_name: Bradyrhizobiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Bronchial secretion

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Paenibacillus sp. PL2-23

ncbi_submitter: Shandong University at Weihai


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: zhejiang University


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: Kasetsart university Kampangsan campus


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: GNS Science


ncbi_country: India: Sativali

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Dehalococcoidaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Connecticut


ncbi_country: USA: Storrs; CT

ncbi_isolation_source: Hindgut contents

ncbi_organism_name: Dysgonomonas sp. BGC7


ncbi_country: Russia: Moscow

ncbi_isolation_source: liquor

ncbi_submitter: SRCAMB


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Belgium: Ghent

ncbi_isolation_source: Iceberg lettuce

ncbi_organism_name: Leuconostoc gasicomitatum

ncbi_submitter: University of Helsinki


ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_type_species_of_genus: t

ncbi_organism_name: Alteraurantiacibacter aestuarii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Ukraine

ncbi_isolation_source: kombucha ground control

ncbi_organism_name: Komagataeibacter oboediens

ncbi_strain_identifiers: IMBG 314

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: INSERM U1070


ncbi_country: South Korea: Jeju

ncbi_isolation_source: Baengnokdam Summit Crater Area; Mt. Halla

ncbi_organism_name: Paenibacillus sp. JNUCC-31

ncbi_submitter: Jeju National University


ncbi_country: USA

ncbi_isolation_source: Tank Milk

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Escherichia coli

ncbi_submitter: APC Microbiome Ireland


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Icahn School of Medicine


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Novosphingobium capsulatum

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Succinatimonas sp. CAG:777

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Ecuador: Atacames; Esmeraldas Province

ncbi_organism_name: Candidatus Pandoraea novymonadis

ncbi_submitter: University of Ostrava


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of the Punjab


ncbi_country: USA: Washington

ncbi_isolation_source: enrichment culture inoculated with soil

ncbi_organism_name: Pseudomonas sp. Sample_23

ncbi_submitter: Washington State University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Zhangzhou city; Fujian province

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Streptomyces nigra

ncbi_submitter: Zhejiang university


ncbi_country: Atlantic Ocean: Gulf of Guinea

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas phenolica

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroides fragilis NCTC 9343

ncbi_strain_identifiers: NCTC 9343

ncbi_submitter: Sanger Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis NCTC 9343


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Argentina

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Health Canada


ncbi_country: China: Fujian

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_strain_identifiers: FNCPS 477

ncbi_submitter: HSE University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China Medical University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Micromonospora zamorensis


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: National Institutes of Health


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: Teagasc


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: CON1 bin7

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_strain_identifiers: CON1 bin7

ncbi_submitter: China Agricultural University


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Isoptericola sp. NPDC060257

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Myxococcaceae bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences


ncbi_isolation_source: Pig rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ausgem


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Streptomyces minutiscleroticus


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Odoribacter splanchnicus


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Denmark: Haderslev

ncbi_isolation_source: activated sludge from Hade_18-Q3-R52-61

ncbi_submitter: Aalborg University


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Roseburia hominis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Segatella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Malaysia:Perak; Kg. Gajah

ncbi_isolation_source: Bulk soil of paddy plot

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: University Putra Malaysia


ncbi_country: South Korea: Wanju

ncbi_isolation_source: Lettuce

ncbi_organism_name: Pantoea sp. V108_6

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Allisonella histaminiformans


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: BGI


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Patescibacteria group bacterium UBA4664

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA4664


ncbi_country: Austria: Alps; Trog8

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter asymbioticus

ncbi_submitter: University of Innsbruck


ncbi_country: USA:New York City

ncbi_isolation_source: culture

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong

ncbi_isolation_source: air medium

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_country: USA: NYC

ncbi_organism_name: Enterobacter hormaechei subsp. xiangfangensis

ncbi_submitter: JCVI


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: CNPSo 29

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: South Korea: Seoul

ncbi_isolation_source: mountain soil

ncbi_organism_name: Paraburkholderia monticola

ncbi_submitter: Seoul National University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Minnesota


ncbi_assembly_name: Rumen uncultured genome RUG11664

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Syntrophus sp. (in: bacteria)

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Syntrophia;o__Syntrophales;f__Syntrophaceae;g__Syntrophus;x__unclassified Syntrophus (in: bacteria);s__Syntrophus sp. (in: bacteria)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Catonella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon aspirate

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of New Hampshire


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levybacteria bacterium RIFCSPLOWO2_01_FULL_40_64


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Coprococcus sp. BIOML-A2

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_country: USA: OK

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_organism_name: Paenibacillus thailandensis

ncbi_strain_identifiers: TISTR 1827

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: Yonsei University


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_country: France

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Ureibacillus;s__Ureibacillus massiliensis;x__Ureibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Veillonella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Slackia isoflavoniconvertens

ncbi_submitter: University of Manitoba


ncbi_country: China: Shenzhen

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudoalteromonas sp. D15MCD-2

ncbi_submitter: Universidad Autonoma del Estado de Morelos


ncbi_country: Egypt

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: USUHS


ncbi_organism_name: Candidatus Faecousia intestinavium

ncbi_submitter: Quadram Institutte


ncbi_country: China

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: University of California, Riverside


ncbi_country: Saudi Arabia

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Vibrio salilacus

ncbi_submitter: Nanjing Agriculture University


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Teat swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: St Petersburg Pasteur Institute, St Petersburg, Russia


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: UK Health Security Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Malaysia: Kelantan

ncbi_isolation_source: carrier foodhandler

ncbi_submitter: Universiti Sains Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Variovorax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium EnGen0323

ncbi_submitter: Broad Institute


ncbi_country: Canada: Nunavut

ncbi_isolation_source: single-cell amplified by WGA-X from cold saline spring sediment

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium LH_S3


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: China: Heilongjiang province

ncbi_isolation_source: lung sample

ncbi_organism_name: Vagococcus lutrae

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Manhattan


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: cold seep

ncbi_organism_name: Atribacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Monoglobales bacterium


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Bacillus cereus group sp. Bce022

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bce022


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: Virginia Tech


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bordetella pseudohinzii

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Salmonella sp. 741265061_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: Army Medical University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Mariniplasma sp.


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Streptomyces zaomyceticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. SAL04152

ncbi_submitter: Zhejiang university


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_name: Salmonella enterica CVM N31380-SQ v1.0

ncbi_country: USA: CA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Paenibacillus sp. FSL H7-0943

ncbi_submitter: Penn State


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudonocardia sp.


ncbi_organism_name: uncultured Cardiobacteriaceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Acutalibacter muris


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bulleidia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: United Kingdom: England

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_country: India: NGTC

ncbi_isolation_source: Raw chicken

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Zhangjiajie

ncbi_isolation_source: iron mineral soil

ncbi_organism_name: Paenibacillus ferrarius

ncbi_submitter: Huzhong Agricultrural University


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: vagina

ncbi_organism_name: Peptoniphilus sp. DNF00840

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: not available

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Segatella oris


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_country: Germany

ncbi_organism_name: Escherichia marmotae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Andrena trimmerana


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Linnaeus University


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Photobacterium arenosum

ncbi_submitter: BlueCC


ncbi_country: Malaysia: Penang

ncbi_isolation_source: brine from pickled fruit

ncbi_organism_name: Anoxybacillus sp. J5B_2022

ncbi_submitter: Universiti Malaysia Pahang


ncbi_country: Pacific Ocean

ncbi_isolation_source: Deep Sea Water

ncbi_organism_name: Pseudomonas abyssi

ncbi_submitter: Shanghai Ocean University


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Bronchial secretion

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Micromonospora sp. NPDC020750

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Thiotrichaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Rubrivivax sp.

ncbi_submitter: University of East Anglia


ncbi_country: New Zealand

ncbi_organism_name: Eisenibacter elegans DSM 3317

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Microscillaceae;g__Eisenibacter;s__Eisenibacter elegans;x__Eisenibacter elegans DSM 3317


ncbi_country: USA: MI

ncbi_isolation_source: clinical isolate

ncbi_submitter: US Food and Drug Administration


ncbi_country: Belgium

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: KU Leuven


ncbi_country: Cambodia: Phnom Penh

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita university


ncbi_country: Qatar: Doha

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sidra Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Streptomyces lavendofoliae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_organism_name: Sphingobacterium multivorum

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Pseudomonas extremaustralis

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: south china agriculture university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: Poland

ncbi_isolation_source: rectal swab of nestling

ncbi_organism_name: Bordetella sp. 02P26C-1

ncbi_submitter: Robert Koch-Institut


ncbi_country: India: Bangalore

ncbi_isolation_source: rotten fig

ncbi_organism_name: Chryseobacterium nematophagum

ncbi_submitter: University of Glasgow


ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Canada: Guelph

ncbi_isolation_source: Seed mucilage

ncbi_organism_name: Acinetobacter sp. EKM10A

ncbi_submitter: University of Guelph


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 102

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 129

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_assembly_name: IMG-taxon 2619619645 annotated assembly

ncbi_organism_name: Reichenbachiella faecimaris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Malaysia

ncbi_isolation_source: Endotracheal throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces sp. NBRC 13847

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Pseudoalteromonas distincta

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: soil

ncbi_organism_name: Mucilaginibacter sp. L3T2-6

ncbi_submitter: Seoul Women's university


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_organism_name: Alkalihalobacillus pseudalcaliphilus

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: Animal and Plant Health Agency


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Sphaerotilus sulfidivorans


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Bacteriovoracaceae bacterium


ncbi_isolation_source: leaf rape

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qingdao Agricultural Universtiy


ncbi_country: Ghana: Accra

ncbi_isolation_source: mid-stream urine sample

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Syntrophales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Comamonadaceae bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Variovorax atrisoli 110B

ncbi_submitter: University of the Pacific


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Qipengyuania sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: The Third People's Hospital of Shenzhen


ncbi_submitter: Yangzhou University


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Ruminococcus sp.


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces


ncbi_country: Brazil: Belem

ncbi_organism_name: Actinomycetes bacterium


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: Salt Lake City

ncbi_organism_name: bacterium

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Burkholderia sp. Leaf177

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: Clinical Microbiology Laboratory

ncbi_submitter: Guangdong Provincial People's Hospital


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Corynebacterium pollutisoli

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Brazil

ncbi_isolation_source: bulk soil from sugarcane field

ncbi_organism_name: Pseudomonas sp. B33(2017)

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering


ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Desulfovibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Altavista; VA

ncbi_isolation_source: PCB contaminated wastewater treatment lagoon sediment microcosms

ncbi_organism_name: bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Streptomyces sp. JL7001

ncbi_submitter: Hunan University of Chinese Medicine


ncbi_country: Greece: Athens

ncbi_isolation_source: stool samples

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Butyricimonas faecihominis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_organism_name: Brachyspira pilosicoli

ncbi_submitter: University of Southampton


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: University of Colorado at Boulder


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Greece

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: south china agriculture university


ncbi_country: France: Marseille

ncbi_isolation_source: diatom

ncbi_organism_name: Pseudoalteromonas mariniglutinosa NCIMB 1770

ncbi_strain_identifiers: NCIMB 1770

ncbi_submitter: Shandong University


ncbi_country: Taiwan: GenMont Biotech (Tainan)

ncbi_isolation_source: Human gut

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Yuan Ze University


ncbi_organism_name: Klebsiella sp. 72125

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Chicago

ncbi_isolation_source: human fecal sample

ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: University of Chicago


ncbi_submitter: Institute of Plant Protection, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kurstaki;x__Bacillus thuringiensis serovar kurstaki str. HD73


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: punctuat

ncbi_organism_name: Mycobacterium tuberculosis BTB08-288

ncbi_submitter: Broad Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: EMG


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Canada: Alberta

ncbi_isolation_source: Free water knockout tank

ncbi_organism_name: Kosmotoga sp. DU53

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Streptomyces sp. NPDC102264

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Nonomuraea fuscirosea

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: swine farm

ncbi_organism_name: Providencia vermicola

ncbi_submitter: sichuan university


ncbi_assembly_name: IMG-taxon 2593339260 annotated assembly

ncbi_organism_name: Bacteroides sp. AR20

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ottowia sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_submitter: Huashan Hospital


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy: d__Bacteria;p__Candidatus Melainabacteria;c__;o__Candidatus Gastranaerophilales;f__;g__;s__Candidatus Gastranaerophilus phascolarcticola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__Candidatus Gastranaerophilus;s__Candidatus Gastranaerophilus phascolarcticola


ncbi_country: Colombia: Bogota

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Chile: Region del Bio Bio

ncbi_isolation_source: walnut tree

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: FDA


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: Denmark: Hvidovre

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_country: China: Jiang Su

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: jiangnan


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: New York

ncbi_isolation_source: Wild tick nymph

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Columbia University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Escherichia coli MS 153-1

ncbi_submitter: Genome Sequencing Center (GSC) at Washington University (WashU) School of Medicine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_organism_name: Alcaligenes ammonioxydans

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Candidatus Caccocola faecigallinarum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Synergistota;c__Synergistia;o__Synergistales;f__Synergistaceae;x__Synergistaceae incertae sedis;g__Candidatus Caccocola;s__Candidatus Caccocola faecigallinarum


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Anaeroplasmataceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Auburn University


ncbi_assembly_name: freshwater MAG --- KT3_bin-720

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Fervidobacterium nodosum Rt17-B1

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal sample

ncbi_organism_name: Veillonella nakazawae

ncbi_submitter: University of Chicago


ncbi_country: Germany

ncbi_isolation_source: animal

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Sedimentibacter sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Sedimentibacter;x__unclassified Sedimentibacter;s__Sedimentibacter sp.


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Roseitalea sp.

ncbi_submitter: China University of Geosciences


ncbi_country: France

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine; clean catch

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Alabama in Huntsville


ncbi_isolation_source: soil

ncbi_organism_name: Georgenia thermotolerans

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: University of Georgia


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Parasporobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in St Louis


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Paraneptunicella sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Chongqing Medical University


ncbi_assembly_name: freshwater MAG --- Ja_bin-3384

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Collinsella aerofaciens


ncbi_country: Australia: Newcastle

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Sinorhizobium chiapasense


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: buccal mucosa of child

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Aarhus University


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: University of Malaya


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Bacteriology I, National Institute of Infectious Diseases


ncbi_country: Canada: Lacombe

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: AAFC


ncbi_country: Czech Republic

ncbi_organism_name: Pseudomonas typographi

ncbi_submitter: Universidad de Salamanca


ncbi_country: Estonia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_isolation_source: Other (drainage)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_isolation_source: metagenome

ncbi_organism_name: Pantoea ananatis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: Genomics Research Center of Harbin Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum;x__Salmonella enterica subsp. enterica serovar Gallinarum/Pullorum str. RKS5078


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: water: produce preharvest environment

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: CA

ncbi_isolation_source: bovine fecal (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: Universidad Nacional de La Plata


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_assembly_name: Rumen uncultured genome RUG14791

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Acinetobacter baumannii 24845_9

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Mixta calida

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Stenomitos frigidus ULC18

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Veillonella criceti

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium GW2011_GWA1_46_15


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Collinsella sp. UBA4258

ncbi_submitter: University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;s__Candidatus Nealsonbacteria bacterium RIFCSPLOWO2_01_FULL_43_32


ncbi_organism_name: Methylotuvimicrobium alcaliphilum 20Z

ncbi_submitter: CEA/DSV/IG/Genoscope


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: China: Jilin

ncbi_organism_name: Lactobacillus sp. M0403

ncbi_submitter: China Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC057381

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Coatesbacteria bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Coatesiibacteriota;x__unclassified Candidatus Coatesbacteria;s__Candidatus Coatesbacteria bacterium


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Germany: Bavaria

ncbi_isolation_source: flower

ncbi_organism_name: Apilactobacillus xinyiensis

ncbi_submitter: Technische Universitaet Muenchen


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: Afghanistan

ncbi_isolation_source: Surveillance

ncbi_submitter: The University of Sydney


ncbi_organism_name: Providencia alcalifaciens PAL-2

ncbi_submitter: JCVI


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: France

ncbi_organism_name: Xanthomonas arboricola

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: Mississippi State University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces sp. NPDC102487


ncbi_country: China

ncbi_isolation_source: Sludge

ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: Shanghai JiaoTong University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: YF

ncbi_submitter: university


ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Denmark: Hoersholm; Near raspberry bush in Hoersholm

ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Coprococcus catus

ncbi_submitter: University of Manitoba


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Hainan University


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Neisseria subflava

ncbi_submitter: Kingston University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Mediterraneibacter faecis


ncbi_organism_name: Pradoshia sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Akkermansia muciniphila


ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: national health research institutes


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acidaminococcales bacterium


ncbi_submitter: Hangzhou Medical College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Cytobacillus praedii

ncbi_submitter: Aarhus University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yunnan; Fenggang salt mine

ncbi_organism_name: Amorphus orientalis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin18

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: MSU bin18

ncbi_submitter: Monash University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Veillonella dispar

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Biofilms

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Penn State University


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Seoul National University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mesorhizobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Germany

ncbi_organism_name: Mucilaginibacter phyllosphaerae

ncbi_submitter: Shandong university at Weihai


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Argentina: Buenos Aires

ncbi_submitter: University of Oxford


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: Switzerland

ncbi_submitter: University of Bern


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: De novo assembly of KCRI isolate RDK01_610

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Streptomyces sp. NPDC005438

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG14320

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: BD-LP

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments

ncbi_organism_name: Bacteroidetes bacterium 4484_276

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium 4484_276


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W12582

ncbi_submitter: Broad Institute


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Pseudomonas aeruginosa 9BR

ncbi_submitter: IBIS, Universite Laval


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Simkaniaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: NC

ncbi_isolation_source: environment

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_assembly_name: LM09-00261 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR