ncbi_organism_name: Citricoccus alkalitolerans

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Marine Biological Laboratory


gtdb_representative: f

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_level: Scaffold

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: SCOPE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_level: Chromosome

ncbi_organism_name: Endozoicomonas sp. ALC020

ncbi_submitter: University of Melbourne


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: lake water

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: uncultured Arcticibacterium sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Desulfovibrionaceae bacterium


ncbi_country: Russia: Krasnoyarsk Region

ncbi_isolation_source: Ready-to-cook meat cutlets

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Japan: Kusatsu

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: Osaka Ohtani University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Deinococcus taklimakanensis

ncbi_refseq_category: reference genome

ncbi_type_material_designation: assembly from type material


ncbi_country: Antarctica: Taylor Valley; Canada Glacier

ncbi_isolation_source: sediment from cryoconite holes

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: University of Colorado at Boulder


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium QH_3_48_40

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium QH_3_48_40


ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_country: Germany: Hesse

ncbi_isolation_source: cow udder

ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Hessian State Laboratory


ncbi_organism_name: Eggerthella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_level: Complete Genome

ncbi_country: Canada: ON

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:-


ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: CIISA - Centre of Interdisciplinary Research in Animal Health, Faculty of Veterinary Medicine, Unive


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: oral cavity- mouth

ncbi_organism_name: Porphyromonas gingivalis F0185

ncbi_submitter: Washington University


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Semmelweis University


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas sp. PA-1-6G

ncbi_submitter: NIAB East Malling Research


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG25

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Propionicimonas sp.

ncbi_strain_identifiers: labscale reactor_MAG25

ncbi_submitter: TU Delft


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA: MD

ncbi_isolation_source: Pre-chill chicken carcass

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Planomonospora corallina

ncbi_strain_identifiers: TBRC 4489

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Hangzhou First People's Hospital


ncbi_isolate: strain M7

ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter bizzozeronii

ncbi_strain_identifiers: strain M7

ncbi_submitter: University of Antwerp, Belgium


ncbi_organism_name: Flavobacterium alkalisoli

ncbi_submitter: Ocean University of China


ncbi_organism_name: Anaerostipes caccae

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Pseudomonas sp. FG1

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Germany: Goettingen

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1402

ncbi_submitter: Broad Institute


ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Porphyromonas asaccharolytica

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Queensland


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_country: Thailand: Khonkaen

ncbi_isolation_source: meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_country: Greece

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_isolation_source: ballast tank

ncbi_organism_name: Parachlamydiaceae bacterium

ncbi_submitter: Shandong university


ncbi_organism_name: Paeniclostridium sp.

ncbi_submitter: Anhui University of Science & Technology


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Germany

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 2010-60-6511-39


ncbi_organism_name: Acidovorax sp. NO-1

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Distal colon

ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: Centre for Microbiome Research


gtdb_type_species_of_genus: t

ncbi_country: USA: Hawaii; Kailua

ncbi_isolation_source: rocky sand

ncbi_organism_name: Flammeovirga aprica JL-4

ncbi_submitter: Third Institute of Oceanography China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 223

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 4633

ncbi_submitter: University of Calgary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris


ncbi_isolation_source: tissue

ncbi_organism_name: Bacteroides fragilis str. 3725 D9(v)

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides fragilis;x__Bacteroides fragilis str. 3725 D9(v)


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Italy

ncbi_organism_name: Microbacterium lacticum

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: the seqafrica consortium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago


ncbi_country: Serbia: Crvenka

ncbi_organism_name: Xanthomonas arboricola pv. juglandis

ncbi_submitter: University of Exeter


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Citrobacter braakii


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. 357B1

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 357B1


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin5

ncbi_isolation_source: soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: KAP bin5

ncbi_submitter: Monash University


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Eubacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Eshraghiella crossota


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-673-O02


ncbi_country: Canada:Fort McMurray

ncbi_isolation_source: Sand Stone

ncbi_organism_name: Micrococcaceae bacterium UBA4005

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Sichuan

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Ec46A_L1 MIRA assembly

ncbi_organism_name: Escherichia coli

ncbi_submitter: CGS-GL


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: USA: Yellowstone Lake; Wyoming

ncbi_isolation_source: biofilm attached to a sub-lacustrine hydrothermal vent

ncbi_organism_name: Tibeticola sp.

ncbi_submitter: Montana State University


ncbi_isolation_source: marine

ncbi_organism_name: Bacteroidota bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: INRA


ncbi_isolation_source: Small intestine

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Moscow region

ncbi_isolation_source: plant

ncbi_organism_name: Rathayibacter caricis

ncbi_strain_identifiers: VKM Ac-2924

ncbi_submitter: PSCBR RAS G.K. Skryabin Institute of Biochemistry and Physiology of Microorganisms RAS


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: rhizosphere

ncbi_organism_name: Variovorax sp. CAN15

ncbi_strain_identifiers: SPPC 2819

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured bacterium


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Hungatella sp. UBA3147


ncbi_country: Viet Nam: Nha Trang

ncbi_isolation_source: beach sand

ncbi_organism_name: Marivirga tractuosa DSM 4126

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Marivirgaceae;g__Marivirga;s__Marivirga tractuosa;x__Marivirga tractuosa DSM 4126


ncbi_organism_name: uncultured Elioraea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Agriotes lineatus


ncbi_country: China: Maanshan; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidithiobacillus sp.

ncbi_submitter: South china normal university


ncbi_country: China: Shandong

ncbi_isolation_source: activated sludge

ncbi_organism_name: Propylenella binzhouense

ncbi_submitter: University of Jinan


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_country: Canada: British Columbia

ncbi_isolation_source: Imported/domestic retail Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: USA: NY; Westchester Medical Center; peds med surg unit

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: New York Medical College


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: human gut

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Canada: Lacombe

ncbi_organism_name: Hallella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Africa: THABO MOFUTSANYANA; Free State Province

ncbi_isolation_source: Cows Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Zurich


ncbi_organism_name: Chryseobacterium culicis


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Nocardia sp. NPDC051463

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Togo: Lome

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universite de Lome


ncbi_assembly_name: Rumen uncultured genome RUG11903

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China

ncbi_isolation_source: pork

ncbi_organism_name: Salmonella sp. YP95-1

ncbi_submitter: Yangzhou University


ncbi_country: Austria: Vienna

ncbi_organism_name: Streptococcus uberis

ncbi_strain_identifiers: CAIM 1894

ncbi_submitter: CIAD, A.C.


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Beijing Tsinghua Changgung Hospital


ncbi_country: Australia: Tasmania

ncbi_isolation_source: intestines

ncbi_organism_name: Photorhabdus tasmaniensis

ncbi_submitter: University of Bern


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-2

ncbi_submitter: Curtin University


ncbi_country: Italy: Bologna

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: Ethiopia: Gode region

ncbi_organism_name: Streptomyces sp. Go-475

ncbi_submitter: Bielefeld University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep marine sediment

ncbi_organism_name: Aurantiacibacter zhengii

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: Germany

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_organism_name: Streptomyces sp. NPDC026659

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Antarctica: Ekho Lake

ncbi_isolation_source: water samples

ncbi_organism_name: Roseovarius tolerans

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: University of Chicago


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_organism_name: Salmonella sp. NW355

ncbi_submitter: Sichuan University


ncbi_assembly_name: Rumen uncultured genome RUG14244

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Naqu City; Tibet Autonomous Region

ncbi_isolation_source: feces

ncbi_organism_name: Nocardioides sp. zg-DK7169

ncbi_submitter: China CDC


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: JCVI


ncbi_organism_name: Williamsia muralis NBRC 105860

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Caldilineales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Pseudomonas citronellolis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Colombia: Cordoba

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parachlamydia acanthamoebae

ncbi_submitter: Hokkaido University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Priestia megaterium

ncbi_strain_identifiers: IHB B 7164

ncbi_submitter: CSIR-Institute of Himalayan Bioresource Technology


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Treponema scatequi

ncbi_submitter: Quadram Institute


ncbi_country: USA: Idaho

ncbi_isolation_source: biofilm from indoor freshwater fish hatchery

ncbi_organism_name: Pseudomonas fontis

ncbi_submitter: University of Connecticut Graf Lab


ncbi_country: Belgium

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: Sciensano


ncbi_organism_name: Streptomyces sp. NPDC047860

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_submitter: Cardiff University


ncbi_country: Germany: Magdeburg

ncbi_isolation_source: gastric antrum Patient25

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: WA

ncbi_organism_name: Neisseria bacilliformis

ncbi_submitter: University of Washington


ncbi_submitter: The First Affiliated Hospital of Henan University of Science and Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Ghiorseimicrobium undicola

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Ghiorseimicrobium;s__Candidatus Ghiorseimicrobium undicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Ghiorseimicrobium;s__Candidatus Ghiorseimicrobium undicola


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Occiput Swab

ncbi_organism_name: Granulicatella adiacens

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_country: Spain: Asturias

ncbi_organism_name: Yaniella sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Maryland


ncbi_submitter: Institute of Medical Microbiology and Hospital Epidemiology


ncbi_isolation_source: faecal

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: SC


ncbi_country: Poland

ncbi_isolation_source: sourdough

ncbi_organism_name: Weissella confusa

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_organism_name: Neisseria sp. P0017.S009

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: uncultured Phycisphaerae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;x__environmental samples;s__uncultured Phycisphaerae bacterium


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Pseudoruminococcus massiliensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: subspecie aureus F-182

ncbi_submitter: Vircell S.L.


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Rongcheng

ncbi_isolation_source: algae

ncbi_organism_name: Vibrio atlanticus

ncbi_submitter: Shandong Normal University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: India: Hyderabad

ncbi_isolation_source: cecum

ncbi_organism_name: Helicobacter pullorum

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Ruminococcus callidus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Arkansas; Arkadelphia

ncbi_isolation_source: residential yard

ncbi_organism_name: Burkholderia sp. LAS2

ncbi_submitter: Ouachita Baptist University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pelagimonas varians

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Scytonema sp. HK-05

ncbi_submitter: Toyohashi University of Technology


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: The University of Texas at Dallas


ncbi_assembly_name: freshwater MAG --- VK2_bin-0598

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR202 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Dehalococcoidia;x__SAR202 cluster;x__environmental samples;s__uncultured SAR202 cluster bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University hospital Lubeck


ncbi_country: Nepal

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Pseudoflavitalea sp. G-6-1-2

ncbi_submitter: Kyonggi University


ncbi_organism_name: Brevibacillus brevis

ncbi_submitter: Lab of Bio-molecular and Gene technology Institute of Biotechnology and Environment, Tay Nguyen University


ncbi_organism_name: Vibrio ezurae NBRC 102218

ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio ezurae;x__Vibrio ezurae NBRC 102218


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: China: Kunming

ncbi_isolation_source: gut

ncbi_organism_name: Metasolibacillus sp.

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Big Island; ON

ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Australia

ncbi_isolation_source: Brussel Sprouts Loose

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- Loc090402-8m_bin-1114

ncbi_organism_name: uncultured beta proteobacterium


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: National Kaohsiung Normal University


ncbi_assembly_name: Rumen uncultured genome RUG269

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Universidad de Leon (Spain)


ncbi_submitter: Medical Mycology Research Center


ncbi_country: Netherlands

ncbi_isolation_source: pork

ncbi_submitter: Shanghai Customs


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Actinomyces naeslundii

ncbi_submitter: EMG


ncbi_country: Somalia

ncbi_isolation_source: fermented camel milk

ncbi_submitter: Brigham Young University


ncbi_country: Brazil

ncbi_organism_name: Rhizobium leucaenae

ncbi_strain_identifiers: CPAO 29.8

ncbi_submitter: LNCC


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Dormibacterales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy: d__Bacteria;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;o__Candidatus Dormibacterales;x__unclassified Candidatus Dormibacterales;s__Candidatus Dormibacterales bacterium


ncbi_country: Finland: Helsinki

ncbi_isolation_source: raw grated beetroot-associated outbreaks

ncbi_organism_name: Pseudomonas sp. 2822-15

ncbi_submitter: Faculty of Veterinary Medicine, University of Helsinki


ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Fudan University


ncbi_country: South Korea

ncbi_organism_name: Chryseobacterium edaphi

ncbi_submitter: Dongguk University


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: Mexico

ncbi_organism_name: Priestia sp. TSO9

ncbi_submitter: Instituto Tecnologico de Sonora


ncbi_country: Egypt: Faiyum; Ibshaway

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: msa univeristy


ncbi_country: USA: Hickory Corners; Michigan

ncbi_isolation_source: leaf-associated phyllosphere

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Iowa State University


ncbi_country: Spain: Tarragona; Catalonia

ncbi_isolation_source: Mussels

ncbi_organism_name: Malaciobacter mytili LMG 24559

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Germany

ncbi_isolation_source: pig

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: New Zealand: Christchurch

ncbi_isolation_source: returned activated sewage sludge

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Institute of Environmental Science Ltd


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospira sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Caldimonas taiwanensis NBRC 104434

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: EMG


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Japan: Shiga

ncbi_isolation_source: river water

ncbi_organism_name: Serratia sp. JSRIV006

ncbi_submitter: Kyoto University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. JSRIV006


ncbi_isolation_source: Plant

ncbi_organism_name: Methylobacterium gnaphalii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Chongqing Medical University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_country: USA: California; Los Angeles County

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: National Center of Infectious and Parasitic Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_organism_name: uncultured bacterium


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Dysosmobacter sp.


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Escherichia sp. WS1853

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Brevibacillus centrosporus

ncbi_submitter: Nanjing University


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 6717

ncbi_submitter: Ghent University


ncbi_organism_name: Synechococcus sp. A10-1-5-9

ncbi_submitter: ShanDong University


ncbi_organism_name: Enterococcus sp. AZ164

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC008137

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolate: CON6 bin18

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_strain_identifiers: CON6 bin18

ncbi_submitter: China Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_organism_name: Terrimicrobiaceae bacterium

ncbi_submitter: Rutgers University


ncbi_submitter: Swansea University


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: chicken

ncbi_submitter: USDA-ARS


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium mantenii

ncbi_submitter: JCVI


ncbi_organism_name: Listeria monocytogenes FSL J1-208

ncbi_submitter: Food Safety Laboratory, Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes FSL J1-208


ncbi_organism_name: Agromyces laixinhei

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Contr


ncbi_isolate: ElbeB

ncbi_isolation_source: water

ncbi_organism_name: Methylomonas fluvii

ncbi_strain_identifiers: ElbeB

ncbi_submitter: GFZ German Research Centre for Geosciences


ncbi_organism_name: Comamonadaceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0388R

ncbi_submitter: Broad Institute


ncbi_country: Bulgaria

ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Gemmatimonadota bacterium


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Canada: Manitoba

ncbi_isolation_source: abdomen

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: National Microbiology Laboratory


ncbi_country: Qatar

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Qatar University


ncbi_organism_name: Syntrophobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_assembly_name: IMG-taxon 2634166350 annotated assembly

ncbi_organism_name: Fontibacillus panacisegetis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled sediment sample collected from floor of cattle farm

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: The REHAB Consortium


ncbi_assembly_name: BSN44 Closure

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Middle Meatus

ncbi_submitter: The University of Queensland


ncbi_country: Poland: North-East

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Medical University of Bialystok


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Thomasclavelia cocleata

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ballast tank

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Shandong university


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: EMG


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: tissue

ncbi_organism_name: Phocoenobacter skyensis

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: Human

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Infection, Veterinary & Ecological Sciences


ncbi_organism_name: Achromobacter denitrificans NBRC 15125

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID 4344

ncbi_submitter: University Hospital Regensburg


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_organism_name: Candidatus Choladocola sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladocola;x__unclassified Candidatus Choladocola;s__Candidatus Choladocola sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: South Korea

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Sewage plant

ncbi_organism_name: Clostridium formicaceticum

ncbi_submitter: The Ohio State University


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Unidad de Genomica y Bioinformatica


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: BGI


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Puerto Rico

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: India: Dehradun; Uttarakhand

ncbi_isolation_source: soil of feather dumping site

ncbi_organism_name: Bacillus cereus

ncbi_submitter: CSIR-IIP


ncbi_country: Australia

ncbi_submitter: University of Texas at San Antonio


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Cote d Ivoire: Yamoussoukro

ncbi_isolation_source: University Hospital of Yamoussoukro

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Pasteur Institut of Ivory Coast


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: municipal wastewater

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Australia: near Moree; NSW

ncbi_organism_name: Mesorhizobium sp. WSM4304

ncbi_submitter: Curtin University


ncbi_country: China: Ningbo

ncbi_organism_name: Aliiroseovarius sp. Z3

ncbi_submitter: Ningbo University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Chthonomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_submitter: University of Southern California

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Madrid

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: metagenome

ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Brazil:Santa Catarina; Tubarao

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Pantoea sp. UBA3038


ncbi_isolate: BR-alpha

ncbi_strain_identifiers: obscurior;BR-alpha

ncbi_submitter: ICBIBE-UV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__ant endosymbionts;g__Candidatus Westeberhardia;s__Candidatus Westeberhardia cardiocondylae


ncbi_country: United Kingdom: Coventry

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Zola

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Maimonides Biomedical Research Institute of Cordoba


ncbi_country: USA: New York City

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Henan Agricultural University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: Ireland

ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Auburn University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar 4,[5],12:i:-

ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)


ncbi_organism_name: Streptomyces lividans

ncbi_submitter: zhejiang university


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;p__Candidatus Deferrimicrobiota;c__Candidatus Deferrimicrobia;o__Candidatus Deferrimicrobiales;f__Candidatus Deferrimicrobiaceae;x__unclassified Candidatus Deferrimicrobiaceae;s__Candidatus Deferrimicrobiaceae bacterium


ncbi_organism_name: Salmonella sp. 741265104_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: Bacillus cereus group sp. BC54

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC54


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: EPFL


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Marinilabiliaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Roseburia inulinivorans


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: Ireland: Woodstown

ncbi_isolation_source: haemolymph

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: Cefas


ncbi_country: USA: Pennsylvania; Centralia

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Michigan State University


ncbi_country: Brazil

ncbi_isolation_source: Buffalo milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Montana

ncbi_isolation_source: freshwater

ncbi_organism_name: Enterococcus faecalis MTUP9

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Russia: Borehole near Beyelii Yar in Tomsk

ncbi_isolation_source: groundwater filtered on 0.22 m filters

ncbi_organism_name: Dethiobacter sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: USA: Alabama; Tuscaloosa

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Auburn University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Brisbane

ncbi_isolation_source: lungs of cystic fibrosis patient B

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Capillimicrobium sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: CF patient

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: LM-UGent


ncbi_assembly_name: freshwater MAG --- KT_bin-1943

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA: Durham; NH; Adams Point

ncbi_isolation_source: root nodule

ncbi_organism_name: Kocuria rhizophila

ncbi_submitter: University of New Hampshire


ncbi_country: Japan

ncbi_organism_name: Streptococcus parasuis

ncbi_submitter: Kobe Institute of Health


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Faecalicoccus pleomorphus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: Australia: Western Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Oregon State University


ncbi_isolation_source: subcutaneous granuloma

ncbi_organism_name: Mycobacterium haemophilum DSM 44634

ncbi_submitter: Albert Einstein College of Medicine


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Streptomyces sp. NBC_00310

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alistipes indistinctus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ares Genetics GmbH


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Ibadan, Nigeria


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Campylobacter sp. CH246

ncbi_submitter: University of Padova


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Saudi Arabia

ncbi_isolation_source: Hospital Environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: King Abdulaziz University


ncbi_organism_name: Escherichia coli FBP1

ncbi_submitter: University Medical Center Utrecht


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0853

ncbi_submitter: Broad Institute


ncbi_organism_name: Sneathia vaginalis

ncbi_submitter: Wayne State University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Child Health Research Foundation


ncbi_organism_name: Clostridium butyricum

ncbi_strain_identifiers: NBRC 3858

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Dethiobacteria bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Mozambique

ncbi_organism_name: Mycobacterium asiaticum

ncbi_submitter: JCVI


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sphingomonas desiccabilis

ncbi_strain_identifiers: SD

ncbi_submitter: University of Mississippi


ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG232

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 101

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: SNUC 144

ncbi_submitter: University of Calgary


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Moorella sp. (in: firmicutes)

ncbi_submitter: Indian Institute of Technology Kharagpur


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium V9D3004

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Southampton


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfobulbaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Amesbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Amesiibacteriota;x__unclassified Candidatus Amesbacteria;s__Candidatus Amesbacteria bacterium


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Neisseria lactamica 020-06

ncbi_submitter: Sanger Institute


ncbi_isolation_source: Colon

ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Candidatus Brocadia sp. AMX3

ncbi_submitter: Peking University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Brocadia;x__unclassified Candidatus Brocadia;s__Candidatus Brocadia sp. AMX3


ncbi_organism_name: Shewanella livingstonensis

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shaoxing Second Hospital


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Syntrophomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte, Liguria e Valle d'Aosta


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: University of Stirling


ncbi_country: India: Uttarakhand

ncbi_isolation_source: Soil

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Indian Institute of Technology Roorkee


ncbi_organism_name: Candidatus Dormibacteria bacterium

ncbi_submitter: Center for Genome Regulation (CRG)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;c__Candidatus Dormibacteria;x__unclassified Candidatus Dormibacteria;s__Candidatus Dormibacteria bacterium


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;x__unclassified Francisella;s__Francisella endosymbiont of Hyalomma asiaticum


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: KS

ncbi_isolation_source: Heifers

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N59624F

ncbi_submitter: FDA


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University and Research


ncbi_organism_name: Treponema pallidum

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. 818


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Bartonella henselae

ncbi_submitter: Department of Microbiology, Fujita Health University


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Borreliella burgdorferi 94a

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Qingdao University


ncbi_country: Brazil

ncbi_isolation_source: Vegetable Salad with Mayonnaise

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: China: Shenzhen; Longgang

ncbi_isolation_source: stool

ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Ocean University of China


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shandong

ncbi_isolation_source: anal swab

ncbi_organism_name: Aeromonas simiae

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Sulfobacillus benefaciens

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;s__Sulfobacillus benefaciens


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: respiratory

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Oxalobacter sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Trento


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Chongqing Medical University


ncbi_country: China: Hangzhou

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA: New York

ncbi_isolation_source: Breast Abscess

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: University of Rochester Medical Center


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;o__Candidatus Absconditabacterales;x__unclassified Candidatus Absconditabacterales;s__Candidatus Absconditabacterales bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: Deteriorating Pineapple

ncbi_organism_name: Staphylococcus auricularis

ncbi_submitter: University of Lagos


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: uncultured bacterium


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Salmonella enterica CVM N45396 v1.0

ncbi_country: USA: LA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_organism_name: uncultured Roseibacillus sp.

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Singapore

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National University of Singapore


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_assembly_name: LM08-01516 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolate: AOP35_03E_surf _bin _33

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP35_03E_surf _bin _33

ncbi_submitter: Genoscope


ncbi_organism_name: Sutcliffiella horikoshii

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_country: Slovenia

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium coryneforme


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Ares Genetics


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Turkey: Corum

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces boncukensis

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Fukushima university


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Marinoscillum sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acutalibacter muris


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: USA: Alaska

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: China: Shanghai

ncbi_submitter: Shanghai CDC


ncbi_country: Pakistan: Senkhore

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Clostridium sp. K13

ncbi_submitter: Heilongjiang bayi agricultural university


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus sobrinus TCI-77

ncbi_submitter: JCVI


ncbi_country: Australia: Great Barrier Reef

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_organism_name: Shigella sonnei


ncbi_country: India

ncbi_submitter: Washington State University


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Ireland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: swine nasal swab

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: South China Agricultural University


ncbi_country: Sweden

ncbi_isolation_source: prostatic tissue

ncbi_organism_name: Cutibacterium acnes subsp. acnes

ncbi_submitter: Aarhus University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Micromonospora sp. NPDC049175

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Paraburkholderia nemoris

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Basel


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 4557

ncbi_submitter: Ghent University


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Streptomyces massasporeus


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_assembly_name: De novo assembly of KCRI isolate R0007_119EC

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Shandong University


ncbi_assembly_name: freshwater MAG --- LJ_bin-1730

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_isolation_source: nymph

ncbi_organism_name: Candidatus Rickettsia kotlanii

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: USA: Missouri; St. Louis

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: Porticoccus sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_country: Saint Kitts and Nevis: Saint Kitts; Basseterre

ncbi_isolation_source: skin lesion from farm animal

ncbi_organism_name: Dermatophilus congolensis

ncbi_submitter: Ross University School of Veterinary Medicine


ncbi_country: United Kingdom: England

ncbi_isolation_source: Brewery

ncbi_organism_name: Levilactobacillus brevis BSO 464

ncbi_strain_identifiers: BSO 464

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Clostridium saccharobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptomyces niveus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway: Nordland county

ncbi_isolation_source: Smolt-producing farm

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: University of Oslo


ncbi_country: South Korea: Mokpo City

ncbi_organism_name: Litchfieldia luteola


ncbi_country: India: West Bengal

ncbi_isolation_source: river water

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Pontibacter akesuensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Salinibacter ruber


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B343;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0120

ncbi_submitter: Broad Institute


ncbi_organism_name: Microbacterium sp. MMO-79

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: xylene contaminated groundwater

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Duisburg-Essen University


ncbi_organism_name: Candidatus Pseudoscillospira sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pseudoscillospira;x__unclassified Candidatus Pseudoscillospira;s__Candidatus Pseudoscillospira sp.


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 62:z36:-;x__Salmonella enterica subsp. arizonae serovar 62:z36:- str. 5335/86


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Streptomyces sp. NPDC048514


ncbi_organism_name: Pseudomonas sp.


ncbi_assembly_name: Draft Genome Sequence of Bacillus sonorensis L12

ncbi_country: Sudan: Khartoum

ncbi_isolation_source: milk- and legume-based primary starters used for Gergoush production

ncbi_organism_name: Bacillus sonorensis L12

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus sonorensis;x__Bacillus sonorensis L12


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: Soil

ncbi_organism_name: Pedobacter sp. Bi36

ncbi_submitter: University of Dundee


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Hallerella succinigenes


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_submitter: Aalborg University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: Germany

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_organism_name: Abyssibius alkaniclasticus

ncbi_submitter: fudan university


ncbi_country: USA: Washington State

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_strain_identifiers: MRSP 424

ncbi_submitter: Washington State University


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Cognatiyoonia sp.

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Escherichia coli

ncbi_submitter: instituto de investigaciones biologicas clemente estable


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Opitutaceae bacterium TAV3

ncbi_submitter: University of Texas at Arlington


ncbi_organism_name: bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Epulonipiscium sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Candidatus Epulonipiscium;x__unclassified Candidatus Epulonipiscium;s__Candidatus Epulonipiscium sp.


ncbi_organism_name: Helicobacter ganmani


ncbi_country: South Korea: Heuksan-myeon; Sinan-gun; Jeollanam-do

ncbi_isolation_source: soil

ncbi_organism_name: Ferruginibacter albus

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Research Center of Biotechnology RAS