ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Cyanobacteria bacterium SIG30

ncbi_submitter: University of California, Santa Barbara

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium SIG30


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactobacillus intestinalis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_country: China

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Corynebacteriaceae;g__Corynebacterium;s__Corynebacterium halotolerans;x__Corynebacterium halotolerans YIM 70093 = DSM 44683

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Dietzia sp.

ncbi_submitter: EMG


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_country: Atlantic Ocean: Blake Spur

ncbi_isolation_source: gills from mollusc collected from dive Alvin 3710

ncbi_organism_name: Candidatus Ruthia sp. Plio_17_S18

ncbi_submitter: Universite de Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__unclassified Candidatus Ruthturnera;s__Candidatus Ruthia sp. Plio_17_S18


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Shenzhen

ncbi_organism_name: Coprobacillus sp. OM08-19

ncbi_submitter: BGI


ncbi_organism_name: Stenotrophomonas bentonitica

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Firestoneibacteriota;x__unclassified Candidatus Firestoneibacteriota;s__Candidatus Firestoneibacteriota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Mahidol university


ncbi_organism_name: Salmonella enterica

ncbi_submitter: South Dakota State University


ncbi_country: USA: Texas

ncbi_isolation_source: bovine lymph node

ncbi_submitter: Texas Tech University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Lubbock


ncbi_country: Bolivia: Cochabamba

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: USA

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Mexico

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Xiamen

ncbi_isolation_source: sediment sample collected from the coast

ncbi_organism_name: Thiomicrorhabdus sediminis

ncbi_refseq_category: reference genome

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources, People's Republic of China


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Qinghai

ncbi_organism_name: Apibacter sp. B3924

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_assembly_name: freshwater MAG --- Umea_bin-06587

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium phaseoli

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_country: Russia: Moscow

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Roseibium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Campylobacter coli

ncbi_submitter: University of Georgia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: Turkey

ncbi_isolation_source: Chicken meat

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sulfidigenes


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_submitter: University of Queensland


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Coprobacter fastidiosus


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


gtdb_type_species_of_genus: t

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Citrobacter freundii


ncbi_isolation_source: Human feces

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Methylotenera sp.

ncbi_submitter: University of Waterloo


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas tremae

ncbi_submitter: NIAB East Malling Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12162

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: fruiting body

ncbi_organism_name: Pseudomonas canadensis

ncbi_submitter: Guizhou University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: EPEC 1669

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 648898 4-5


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Tolumonas sp.

ncbi_submitter: Xiamen University


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Auburn; NY

ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis arginini

ncbi_submitter: National Research Council (CNR)


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Wits University


ncbi_organism_name: Lacticaseibacillus paracasei


ncbi_country: China: Guangzhou

ncbi_isolation_source: LJX

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital of Southern Theatre Command of PLA


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA: PA; Crooked Run

ncbi_organism_name: Duganella sp. BJB480

ncbi_submitter: Bard College


ncbi_assembly_name: freshwater MAG --- Day2-5_bin-130

ncbi_organism_name: uncultured Ignavibacteriota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__environmental samples;s__uncultured Ignavibacteriota bacterium


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Federal University of Para.


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Clemson University


ncbi_organism_name: Agrobacterium cavarae


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Vibrio sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Cellulomonas sp. 73-92

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Portugal

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Instituto de Tecnologia Quimica e Biologica Antonio Xavier


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-555

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Teagasc


ncbi_country: Svalbard: coast of Kongsfjorden; Arctic

ncbi_isolation_source: seawater

ncbi_organism_name: Leucothrix arctica

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B4-1-1

ncbi_submitter: Curtin University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ghana: Accra

ncbi_isolation_source: Livestock farm

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Eubacterium sp.


ncbi_isolation_source: Human Stool

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Selenomonas sp. ND2010

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Boston

ncbi_organism_name: Escherichia coli

ncbi_submitter: Boston University


ncbi_organism_name: Pedobacter sp.

ncbi_submitter: mBioClim


ncbi_country: South Africa

ncbi_isolation_source: Spinach

ncbi_strain_identifiers: UPMP 1542

ncbi_submitter: University of Pretoria


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Salmonella sp. s59417

ncbi_submitter: Zhejiang university


ncbi_organism_name: Gordonibacter pamelaeae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Collinsella sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Pseudoalteromonas sp. SYSU M81236

ncbi_strain_identifiers: SYSU M81236

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Candidatus Planktophila sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;x__environmental samples;s__uncultured Candidatus Planktophila sp.


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: Gyeongsang national university


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS CTRL-2

ncbi_isolation_source: activated sludge

ncbi_strain_identifiers: SZAS CTRL-2

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Salmonella sp. NW905

ncbi_submitter: Sichuan University


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-1048

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: USA: PA

ncbi_isolation_source: intestine porcine (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Macrococcus sp. IME1552

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Paenibacillus anaericanus

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NY

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: New York

ncbi_isolation_source: Breast Abscess

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: University of Rochester Medical Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA/CDC


ncbi_organism_name: Serratia nevei

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Carcina quercana


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Dorea longicatena

ncbi_submitter: University of Chicago


ncbi_country: India: Badaun; Mid western plain zone; U.P.

ncbi_isolation_source: India

ncbi_organism_name: Rossellomorea marisflavi

ncbi_submitter: Jawaharlal Nehru University


ncbi_organism_name: Aminobacter aminovorans

ncbi_submitter: SC


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Tunisia

ncbi_submitter: University of Sfax, Faculty of Medicin Sfax

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Saudi Arabia: Thuwal

ncbi_isolation_source: roots of desert plants

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cyanobacteria bacterium P01_D01_bin.14

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium P01_D01_bin.14


ncbi_country: Japan: Ago Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_organism_name: Nocardioides sp. NPDC092400

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Parolsenella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_isolation_source: Hospital

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: China: Hangzhou

ncbi_isolation_source: bloodstream

ncbi_submitter: Zhejiang University


ncbi_country: USA: Maryland

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Braenderup


ncbi_country: Australia: Brisbane

ncbi_isolation_source: Tongue scraping

ncbi_organism_name: Streptococcus sp. 16.1

ncbi_submitter: University of Queensland


ncbi_country: USA: CT

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Cornell University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Sulfitobacter mediterraneus

ncbi_submitter: Shantou University


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Histophilus somni

ncbi_strain_identifiers: 3171HS;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_organism_name: Comamonas sp.


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thiomicrorhabdus sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Zhejiang

ncbi_isolation_source: Domestic environment

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_organism_name: Pluralibacter gergoviae


ncbi_country: Atlantic Ocean: Gulf of Cadiz

ncbi_isolation_source: cold seep sediment sample 8 MPa

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 43

ncbi_submitter: SC


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Desulfuromonadales bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: Freshwater sediment

ncbi_organism_name: Geothrix sp.

ncbi_submitter: Aarhus University


ncbi_isolation_source: Human feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The University of Tokyo


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Halobacteriovoraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: Canada: Cariboo Plateau

ncbi_isolation_source: alkaline salt lake

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: USDA-ARS


ncbi_submitter: University of California San Diego


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: China: Hong Kong

ncbi_isolation_source: stool specimen of a diarrheic patient admitted to a hospital in Hong Kong

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. ST1660/06


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Thalassolituus sp.


ncbi_isolation_source: bone left fourth toe

ncbi_organism_name: Streptococcus sp. HMSC074F09

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: S. Gallicano Institute, IRCCS


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces rubradiris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Blautia sp. LMAG:89

ncbi_submitter: The University of Tokyo


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Irvine


ncbi_country: China

ncbi_isolation_source: traditional dairy product

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Harbin Institute of Technology


ncbi_isolation_source: Vagina

ncbi_organism_name: Gardnerella vaginalis


ncbi_organism_name: Bacteroidales bacterium H4

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium H4


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Monash University


ncbi_country: India: Assam; Guwahati

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: Rumen uncultured genome RUG12197

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Bifgalcum

ncbi_isolation_source: Adult intestine

ncbi_submitter: University of Parma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium gallicum;x__Bifidobacterium gallicum DSM 20093 = LMG 11596


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: environmental

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_country: South Korea

ncbi_isolation_source: Bronchial aspirate

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Shewanella putrefaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Caulobacter sp. Root1472

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Acetivibrio saccincola

ncbi_submitter: CLUE-TERRA


ncbi_country: Belgium: Ghent

ncbi_isolation_source: Celery

ncbi_organism_name: Leuconostoc gasicomitatum

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Cardiff University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Memorial Sloan Kettering Cancer Center


ncbi_organism_name: Bartonella sp. AC140YNZD

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Centro de Investigacion y de Estudios Avanzados del IPN - Unidad Irapuato


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: Institute of Microbiology, Czech Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 80 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: China: Hainan Xiuying residential area

ncbi_isolation_source: household tap filter

ncbi_organism_name: Proteobacteria bacterium HN_bin10

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__unclassified Pseudomonadota;s__Proteobacteria bacterium HN_bin10


ncbi_organism_name: Barnesiella intestinihominis


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_submitter: University of Toronto


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Gemmiger excrementavium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;s__Candidatus Gemmiger excrementavium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium sp. AF36-4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Ecuador

ncbi_isolation_source: urine

ncbi_submitter: Universidad Tecnica de Ambato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: Germany: Hannover

ncbi_isolation_source: throat

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: cucumber rhizosphere

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: marine sediment

ncbi_organism_name: Escherichia sp. E4930

ncbi_submitter: Hong Kong University of Science and Technology


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Texas Tech University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Belarus: Minsk

ncbi_organism_name: Corynebacterium diphtheriae bv. gravis

ncbi_submitter: Northumbria University


ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Flintibacter sp. HCN-6482

ncbi_submitter: Seoul National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Flintibacter;x__unclassified Flintibacter;s__Flintibacter sp. HCN-6482


ncbi_country: France: Paris

ncbi_isolation_source: ascites fluid

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: aphp


ncbi_organism_name: Fretibacter rubidus

ncbi_submitter: University of Scranton


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Roseomonas nitratireducens

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: India: Vellore

ncbi_organism_name: Escherichia coli

ncbi_submitter: Christian Medical College


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: agricultural environmental material

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6491

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMBL-EBI


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Loyola University Chicago


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Paenibacillus sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Hylemonella sp.

ncbi_submitter: Stockholm University


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_strain_identifiers: KCTC 9916

ncbi_submitter: Xinjiang Normal University


ncbi_organism_name: Marivivens donghaensis

ncbi_submitter: German Federation for Biological Data


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Escherichia coli H454

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microcoleus sp. N3A4

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: New Jersy

ncbi_submitter: University of Maryland, College Park

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA7222


ncbi_organism_name: Brevibacterium ammoniilyticum

ncbi_submitter: National Culture Collection of Pakistan (NCCP), LRRI, NARC, Islamabad


ncbi_country: Georgia: Tbilisi

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Eliava IBMV


ncbi_organism_name: Clostridiales bacterium


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: IMG-taxon 2636416083 annotated assembly

ncbi_organism_name: Bacillus sp. 491mf

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 491mf


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium CG10_big_fil_rev_8_21_14_0_10_36_14


ncbi_isolation_source: slaughterhouse

ncbi_organism_name: Salmonella sp. YT3-12-4

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Dongmak foreshore

ncbi_isolation_source: tidal flat sediments

ncbi_organism_name: Paenibacillus sp. CAA11

ncbi_submitter: Korea Research Institute of Standards and Science (KRISS)


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: France: Lille

ncbi_isolation_source: trachea

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangxi

ncbi_isolation_source: balf

ncbi_organism_name: Nocardia beijingensis

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_country: USA: New Jersey

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Mauritius

ncbi_isolation_source: Human Blood

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: Municipal Pensacola Beach; FL

ncbi_isolation_source: beach sand

ncbi_organism_name: Alphaproteobacteria bacterium UBA5343

ncbi_submitter: University of Queensland


ncbi_country: USA: California

ncbi_organism_name: Klebsiella pneumoniae UCI 67

ncbi_strain_identifiers: UCI 67

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 67


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Helicobacter pylori SA171A

ncbi_submitter: MHH


ncbi_assembly_name: Escherichia coli CVM N33857PS v1.0

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N33857PS

ncbi_submitter: FDA


ncbi_organism_name: Psychroserpens mesophilus

ncbi_submitter: EMG


ncbi_country: Israel

ncbi_isolation_source: soil

ncbi_organism_name: Peribacillus frigoritolerans


ncbi_organism_name: Shewanella baltica OS195

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: Brazil

ncbi_strain_identifiers: IBSBF 2346

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. IBSBF 2346


ncbi_country: Norway

ncbi_isolation_source: fish gut

ncbi_organism_name: Shewanella baltica

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_submitter: Canadian Research Institute for Food Safety

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Poona


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Desulfocapsa sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Rhizobiaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas paraeruginosa

ncbi_submitter: KAUST


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_organism_name: Clavibacter nebraskensis

ncbi_submitter: Penn State University


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Taizhou Municipal Hospital


ncbi_organism_name: Alistipes indistinctus


ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Fudan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC060035

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Fibrobacteraceae bacterium


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: Brazil: Dourados


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Sweden

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: sediment trap from marine abyssalpelagic zone

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter avium


ncbi_country: China: hefei

ncbi_isolation_source: vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Anhui Provincial Cancer Hospital


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Beijing Institute of Genomics,Chinese Academy of Sciences


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Jeonbuk National University


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Cyanobium usitatum Tobar12.5m-G36

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Baltimore; MD

ncbi_isolation_source: Surveillance

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_country: India: V.C. Farm

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Eubacterium sp. CAG:251

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:251


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_submitter: JCVI


ncbi_country: Canada: Ontario

ncbi_isolation_source: Chicken feces

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: liver

ncbi_organism_name: Flavobacterium bernardetii

ncbi_submitter: ErciyesUniversity


ncbi_country: USA:California Monterey

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chloracidobacterium sp. UBA2345

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom

ncbi_isolation_source: environment

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: India

ncbi_isolation_source: human feces

ncbi_organism_name: Lacticaseibacillus rhamnosus LR231

ncbi_submitter: Saurashtra University


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Micavibrio sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Acinetobacter nosocomialis


ncbi_organism_name: Kitasatospora phosalacinea


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: laboratory strain

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre Bioengineering RAS


ncbi_assembly_name: Rumen uncultured genome RUG11275

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_submitter: Sichuan University


ncbi_country: India: Goa

ncbi_isolation_source: Mangrove water

ncbi_organism_name: Microbulbifer mangrovi

ncbi_submitter: Goa University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Sweden: Gullmar Fjord

ncbi_isolation_source: hypoxic fjord sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Kiel University


ncbi_country: China

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_country: Denmark: Jaegersborg Dyrehave

ncbi_isolation_source: grassland soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Japan: Tokyo Prefecture; Shikinejima Island; Jinata Onsen

ncbi_isolation_source: iron-rich hot spring

ncbi_submitter: California Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_level: Chromosome

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Valencia


ncbi_organism_name: Tissierella praeacuta

ncbi_submitter: Nanjing University


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Eawag


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: no

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Hafnia sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Amycolatopsis sp. NPDC051114

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Distal colon


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Greece

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolate: AOP18_D1_surf _bin _3

ncbi_organism_name: Lactococcus cremoris

ncbi_strain_identifiers: AOP18_D1_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: MRSN BI Team


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef sponge

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: James Cook University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Germany

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Konstanz


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Guangdong Ocean University


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_submitter: Fred Hutch

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Gardnerella;s__Gardnerella vaginalis;x__Gardnerella vaginalis ATCC 14018 = JCM 11026


ncbi_country: Colombia: Bogota

ncbi_isolation_source: blood

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_assembly_name: Hybrid genome assembly using MiSeq and MinION

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Athalassotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: The University of Auckland


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Dilute Hydrothermal Plume

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG12455

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Peribacillus muralis


ncbi_organism_name: Dermabacter sp. Marseille-Q3180

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: China: Anhui; Wuhu

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter beijerinckii

ncbi_submitter: Universidad de Leon


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 202

ncbi_organism_name: Staphylococcus warneri

ncbi_strain_identifiers: SNUC 2993

ncbi_submitter: University of Calgary


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptococcus oralis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Roseburia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: China: Shandong

ncbi_isolation_source: Retail pork

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_country: Brazil: Dourados

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella sp. 99336

ncbi_submitter: the First Affiliated Hospital of Medical School


ncbi_country: USA: Colorado

ncbi_isolation_source: plant

ncbi_organism_name: Agrobacterium sp. 13-2099-1-2

ncbi_submitter: Oregon State University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Hungary

ncbi_isolation_source: skin

ncbi_organism_name: Acinetobacter genomosp. 15BJ

ncbi_submitter: Broad Institute


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Borreliella burgdorferi

ncbi_submitter: Laval university


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: tissue typing laboratory


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Spain: Asturias

ncbi_organism_name: Tetragenococcus koreensis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Neomegalonema sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: MAH 5606 version 1

ncbi_country: USA: North Carolina

ncbi_isolation_source: lesions

ncbi_submitter: National Animal Disease Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis;x__Mycobacterium avium subsp. hominissuis 10-5606


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Iran

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Melbourne


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Brucella suis 92/29


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_country: China: Weihai

ncbi_organism_name: Exiguobacterium sp. s127

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. s127


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_submitter: National Medicines Institute


ncbi_submitter: Paris Saclay University


ncbi_assembly_name: freshwater MAG --- Ki1-1-6m_bin-0836

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Huashan Hospital


ncbi_submitter: Broad Institute


ncbi_organism_name: Acidobacteriaceae bacterium KBS 146

ncbi_strain_identifiers: KBS 146

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: uncultured Mitsuokella sp.

ncbi_submitter: EMG


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: freshwater

ncbi_organism_name: Metapseudomonas otitidis

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: UPMC Children s Hospital of Pittsburgh; Pittsburgh; Pennsylvania

ncbi_isolation_source: laboratory mutagenesis

ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: A909 sCas9

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Enteromonas sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__Bacillota incertae sedis;g__Candidatus Alloenteromonas;x__unclassified Candidatus Enteromonas;s__Candidatus Enteromonas sp.


ncbi_organism_name: Brevundimonas diminuta


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Chryseobacterium sp.

ncbi_submitter: Guangxi University


ncbi_country: China: Sichuan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_organism_name: Leucobacter komagatae


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: zhejiang University


ncbi_country: Canada: Axel Heiberg Island

ncbi_isolation_source: Ice-wedge polygon

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: Universite Laval


ncbi_organism_name: Salmonella sp. NW401

ncbi_submitter: Sichuan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: IA

ncbi_isolation_source: excrement

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Streptomyces roseoverticillatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: FL; Biscayne National Park

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Pseudonocardia sp. McavD-2-B

ncbi_submitter: Meyer Microbes Lab


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Rhodoglobus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Streptomyces longwoodensis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_organism_name: Serratia odorifera

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Agathobacter rectalis


ncbi_submitter: University of Wyoming


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Coraliomargarita sp.

ncbi_submitter: Institut de Ciencies del Mar


ncbi_country: Indonesia: Sulawesi Island; Lake Matano

ncbi_isolation_source: enrichment of ferruginous lake sediment

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Nevada; Mojave Desert

ncbi_isolate: MOJ bin2

ncbi_isolation_source: soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_strain_identifiers: MOJ bin2

ncbi_submitter: Monash University


ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad Nacional Autonoma de Mexico


ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microcoleus sp. F8-D1

ncbi_submitter: Palacky University Olomouc


ncbi_country: Chile: Santiago

ncbi_isolation_source: bovine

ncbi_submitter: Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile


ncbi_submitter: Makerere University


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: WAGENINGEN UR


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Leptotrichia sp.


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: AAFC


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4569_9 depth 0-3 cm

ncbi_organism_name: Candidatus Coatesbacteria bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Coatesiibacteriota;x__unclassified Candidatus Coatesbacteria;s__Candidatus Coatesbacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa


ncbi_country: India

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_country: USA: Minnesota

ncbi_isolation_source: freshwater

ncbi_organism_name: Enterococcus faecalis MN16


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: EMG


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Rutgers University


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Enterobacter cloacae complex sp. R_G8

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. R_G8


ncbi_country: United Kingdom: London

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: Great Ormond Street Hospital for Children NHS Foundation Trust


ncbi_submitter: City University of Hong Kong


ncbi_country: USA: Georgia

ncbi_isolation_source: freshwater lake mesocosm spiked with cow7 feces day 7

ncbi_organism_name: Cytophagaceae bacterium


ncbi_isolation_source: tuna scrape ground

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001102


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_country: United Kingdom

ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: USA: San Diego; CA

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Corynebacterium gerontici

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: food

ncbi_submitter: FDA/CFSAN


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river near WWTP effluent

ncbi_submitter: University of Zurich


ncbi_country: Lebanon

ncbi_isolation_source: Perianal swab

ncbi_submitter: University of Balamand


ncbi_organism_name: Blautia hydrogenotrophica

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_organism_name: Lentilactobacillus diolivorans

ncbi_submitter: Teagasc


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oceanobacillus luteolus


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: USA: Vidalia Region; GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Roseburia sp. AF15-21

ncbi_submitter: BGI


ncbi_organism_name: Aquipseudomonas alcaligenes MRY13-0052

ncbi_submitter: National Institute of Infectious Diseases, Japan


ncbi_isolation_source: dog

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Netherlands

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_strain_identifiers: CIRM BIA 1623

ncbi_submitter: Agroscope


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_isolation_source: human gut

ncbi_organism_name: Fusobacterium periodonticum

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptomyces eurythermus


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Parcubacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gardnerella sp. DNF01144

ncbi_submitter: Fred Hutch


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Florida


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Berryella wangjianweii

ncbi_submitter: China CDC


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Paenibacillus sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Mediterranean Sea

ncbi_organism_name: Haliea salexigens DSM 19537

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou Center for Disease Prevention and Control


ncbi_country: USA: Oak Ridge; TN

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-121

ncbi_submitter: Arkin Lab


ncbi_isolation_source: saliva

ncbi_organism_name: Streptococcus sp. VT 162

ncbi_submitter: Institute of Human Microbiology LLC


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Devosia sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Nocardioides sp. JS614


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus oralis subsp. dentisani

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptomyces sp. NPDC059224

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: liver

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_strain_identifiers: ATCC 2095

ncbi_submitter: Zeta Biosciences


ncbi_country: South Africa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Hangzhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Chryseolinea sp. H1M3-3

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: USA: California; Modesto

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Gloeocapsopsis dulcis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Universidad Miguel Hernandez


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_assembly_name: E coli IVRI_FBI_590

ncbi_organism_name: Escherichia coli

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Canadian Research Institute for Food Safety


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: [Lactobacillus] rogosae


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_country: USA: NY

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Escherichia coli O25:NM

ncbi_submitter: CDC


ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Staphylococcus aureus A8117

ncbi_submitter: Broad Institute


ncbi_country: Switzerland: Bern

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bern


ncbi_country: China: Beijing

ncbi_isolation_source: milk from animal22

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Hebei University of Science & Technology


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Texas

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Texas A&M University


ncbi_country: Russia: Siberia

ncbi_isolation_source: stool of patient with cholera

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: Antiplague Research Institute of Siberia and Far East, Russian Federation, Irkutsk

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Belgium: Netherlands

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Leafy green

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Salmonella Syst-OMICS


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides stercoris


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_submitter: University of Queensland


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Princeton University


ncbi_organism_name: Actinomyces sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Bolivia: Cochabamba

ncbi_isolation_source: Tracheal Secretion

ncbi_submitter: University of the Basque Country UPV/EHU


ncbi_country: Kenya: Kibera

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: Univ. of Maryland


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Sichuan

ncbi_isolation_source: fecal swabs

ncbi_submitter: China agricultural university


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Ares Genetics GmbH


ncbi_assembly_name: Rumen uncultured genome RUG720

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Colorado State University


ncbi_organism_name: Edwardsiella ictaluri

ncbi_strain_identifiers: Curtis

ncbi_submitter: USDA


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: South Korea:Daegu

ncbi_isolation_source: seed epiphyte

ncbi_organism_name: Pseudomonas sp. KNUC1026

ncbi_submitter: Kyungpook National University


ncbi_country: China: Jiangsu

ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_organism_name: Faecalibacterium wellingii

ncbi_submitter: University of Groningen


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Snodgrassella alvi

ncbi_submitter: Norwegian University of Life Sciences (NMBU)