ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: NY

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_country: Colombia: Tumaco

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Ohio

ncbi_isolation_source: hospital shower hose biofilm

ncbi_organism_name: Erythrobacter sp. CCH5-A1

ncbi_submitter: U.S. Environmental Protection Agency


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Universidad de Alicante


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: Salmonella enterica CVM N51276 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Malaysia: Kampung Trombol area of Kuching; Sarawak

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Streptomyces sp. MUM 136J

ncbi_strain_identifiers: MUM 136J

ncbi_submitter: Monash University Malaysia


ncbi_country: Oman

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. australasiaticum


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: Seoul

ncbi_organism_name: Buchnera aphidicola (Uroleucon sonchi)

ncbi_strain_identifiers: UsonBac

ncbi_submitter: InfoBoss Research Center


ncbi_organism_name: Bacillaceae bacterium

ncbi_submitter: CSIR-National Institute of Oceanography(CSIR-NIO), Regional Centre, Mumbai, India


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: urine

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: Cupriavidus plantarum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Mogibacterium timidum


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Faecalibacterium sp. I2-3-92

ncbi_submitter: AgResearch


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Bern


ncbi_organism_name: Paenibacillus sp. YAF4_2

ncbi_submitter: CCRP


ncbi_isolation_source: anammox sludge collected from membrane bioreactor

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Water quality control, Division of Environmental Engineering, Faculty of Engineering, Department of civil engineering, Hokkaido university


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M91160

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Proteus terrae subsp. cibarius

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_country: Australia

ncbi_submitter: University of Technology, Sydney


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Fujian Province

ncbi_organism_name: Verrucosispora sp. FIM060022

ncbi_submitter: Fujian Institute of Microbiology


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Candidatus Limnocylindrus sp.

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;f__Candidatus Limnocylindraceae;g__Candidatus Limnocylindrus;x__unclassified Candidatus Limnocylindrus;s__Candidatus Limnocylindrus sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Salmonella sp. NW1264

ncbi_submitter: Sichuan University


ncbi_organism_name: Shewanella frigidimarina

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Merdimorpha sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Merdimorpha;x__unclassified Candidatus Merdimorpha;s__Candidatus Merdimorpha sp.


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: Canada: Nunavut; Northern Canada; Cambridge Bay

ncbi_isolate: CAM bin14

ncbi_isolation_source: soil

ncbi_strain_identifiers: CAM bin14

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: uncultured Acidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Linnaeus University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG11247

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_country: South Korea: Suwon

ncbi_isolation_source: High-salt fermented soybean

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Dongduk Women's University


ncbi_organism_name: Staphylococcus aureus M13384

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_organism_name: Geobacillus thermodenitrificans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: Cleanroom

ncbi_organism_name: Cytobacillus kochii

ncbi_strain_identifiers: MER TA 82

ncbi_submitter: Jet Propulsion Laboratory


ncbi_organism_name: Borreliella bavariensis

ncbi_strain_identifiers: PLad

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: lung

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium OttesenSCG-928-C03


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Canada: Ontario

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2a;x__Listeria monocytogenes serotype 1/2a str. 02-5993


ncbi_isolation_source: Ocean cavity beneath Ross Ice Shelf

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: UNIVERSITY OF VIENNA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_country: India: Hyderabad

ncbi_isolation_source: fermented food

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Unique Biotech Limited


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


gtdb_type_species_of_genus: t

ncbi_country: Austria: Puch; feeder creek to Salzach

ncbi_isolation_source: freshater creek

ncbi_organism_name: Fluviispira multicolorata

ncbi_refseq_category: reference genome

ncbi_submitter: University of Innsbruck

ncbi_type_material_designation: assembly from type material


ncbi_country: Italy

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Corynebacterium variabile


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Marinobacter sediminum

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou university


ncbi_country: Canada: Alberta

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Candidatus Pacebacteria bacterium RIFOXYB1_FULL_39_46


ncbi_country: USA: Hawaii

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: MIT


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Universidad de Leon


ncbi_country: Switzerland

ncbi_isolation_source: Venous blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Ancrocorticia sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universiteit Antwerpen


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Sydney


ncbi_country: Russia: Chechnya

ncbi_organism_name: Yersinia pestis

ncbi_submitter: SRCAMB


ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. FJAT-14266

ncbi_submitter: Fujian Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FJAT-14266


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Colombia

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Phytobacter diazotrophicus


ncbi_organism_name: Vibrio sinaloensis DSM 21326

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio oreintalis group;s__Vibrio sinaloensis;x__Vibrio sinaloensis DSM 21326


ncbi_country: South Korea

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. IMCC 29146

ncbi_submitter: Inha University


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Ocean university of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Japan

ncbi_organism_name: Fusobacterium sp.

ncbi_submitter: Yonsei University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Parasaccharibacter apium


ncbi_organism_name: Trebonia sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom

ncbi_isolation_source: elbow skin

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Mobiluncus sp.

ncbi_submitter: NIH/NHGRI


ncbi_country: USA: Boston

ncbi_organism_name: Escherichia coli

ncbi_submitter: Boston University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: EMG


ncbi_organism_name: Exercitatus varius

ncbi_submitter: University of Copenhagen


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 382

ncbi_submitter: SC


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Pseudoflavonifractor phocaeensis

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_organism_name: Streptomyces sp. NPDC059080

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Cutibacterium acnes subsp. defendens

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: isolate

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Billgrantia desiderata

ncbi_submitter: Sichuan University


ncbi_organism_name: Stutzerimonas xanthomarina

ncbi_submitter: Ocean University of China


ncbi_organism_name: bacterium


ncbi_organism_name: uncultured Aquabacterium sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__environmental samples;s__uncultured Aquabacterium sp.


ncbi_organism_name: Pseudomonas sp. NPDC087336


ncbi_organism_name: Streptomyces violascens


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Psychroflexus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pseudidiomarina aestuarii


ncbi_country: Denmark: South Greenland; Kap Hegh

ncbi_isolate: KAP bin69

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: KAP bin69

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_submitter: University of Calgary


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;s__Candidatus Shapirobacteria bacterium RIFOXYC1_FULL_38_24


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: New York State

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_organism_name: Streptococcus iniae

ncbi_strain_identifiers: CB Si-1

ncbi_submitter: A*STAR


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Latescibacteria bacterium UBA6620

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Latescibacteria bacterium UBA6620


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Lentimicrobiaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacillus sp. S20C3

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S20C3


ncbi_country: USA: Massachusetts

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_country: Nigeria

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum of adult cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia sp. DFI.6.71

ncbi_submitter: University of Chicago


ncbi_country: Sweden

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: NCSU


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Marinilabiliales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Marinilabiliales;x__environmental samples;s__uncultured Marinilabiliales bacterium


ncbi_country: USA: Mount Pinos; Los Padres National Forest; California

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Adiutrix intracellularis

ncbi_taxonomy: d__Bacteria;p__Thermodesulfobacteriota;c__Desulfarculia;o__Candidatus Adiutricales;f__Candidatus Adiutricaceae;g__Candidatus Adiutrix;s__Candidatus Adiutrix intracellularis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Desulfarculia;o__Candidatus Adiutricales;f__Candidatus Adiutricaceae;g__Candidatus Adiutrix;s__Candidatus Adiutrix intracellularis


ncbi_country: China: South China Sea

ncbi_isolation_source: Sponge (Xestospongia sp. SYM12)

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_assembly_level: Chromosome

ncbi_country: Australia: Queensland

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: ECTONUhan

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Spain: Barcelona

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_isolation_source: River


ncbi_country: South Africa: Untunjambili Hospital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0104

ncbi_submitter: Broad Institute


ncbi_organism_name: Lactobacillus ultunensis


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INRA


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Cellulosimicrobium sp. E12

ncbi_submitter: Korea University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Acinetobacter baumannii UH15208

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alistipes sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Faeces


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_organism_name: Bacteroides caecigallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Spribille Lab


ncbi_country: Slovenia

ncbi_isolation_source: Well water

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_country: Russia: Republic of Buryatia

ncbi_isolation_source: coal

ncbi_organism_name: Micrococcus sp.

ncbi_submitter: Research Center of Biotechnology


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Naresuan University


ncbi_isolation_source: human gut

ncbi_organism_name: Hafnia alvei

ncbi_submitter: EMG


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167


ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Parasutterella sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Moellerella sp.


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: China: Nanjing

ncbi_isolation_source: laboratory-scale bioreactor denitrification and anammox communities

ncbi_organism_name: Sphaerotilus sulfidivorans

ncbi_submitter: NanJing University


ncbi_isolation_source: sputum

ncbi_submitter: Zhejiang university


ncbi_isolation_source: gastric biopsies

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada

ncbi_isolation_source: environmental watersal

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-388-L21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Switzerland

ncbi_isolation_source: Uterus

ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Bern


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_isolation_source: metagenome

ncbi_organism_name: Odoribacteraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab


ncbi_country: India: West Bengal (Egra)

ncbi_isolation_source: endophytes

ncbi_organism_name: Micromonospora sp. ANENR4

ncbi_submitter: University of Calcutta


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolate: metabat2_pooled_metaflye.165 MAG

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_strain_identifiers: metabat2_pooled_metaflye.165 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: United Kingdom:England

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Malawi: Lilongwe

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: NORHED grant


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom: Berkshire

ncbi_organism_name: Candidatus Liberibacter europaeus

ncbi_submitter: The New Zealand Institute for Plant and Food Research Ltd


ncbi_country: Australia: Brisbane

ncbi_organism_name: Paramuribaculum sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled soil sample collected from floor of pig farm

ncbi_submitter: The REHAB Consortium


ncbi_country: Germany

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: Venezuela: Guarico; Camaguan

ncbi_isolation_source: Seeds

ncbi_organism_name: Neorhizobium sp. SOG26

ncbi_submitter: Icesi University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Magnetospirillum sp.

ncbi_submitter: The University of Auckland


ncbi_country: USA

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1893

ncbi_submitter: Broad Institute


ncbi_country: USA: Unknown

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_organism_name: Kaistiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC019531

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of Hawaii Graf Lab


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_submitter: Penn State University


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: University of Chicago


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: USA: Georgia

ncbi_isolation_source: Chicken processing plant

ncbi_submitter: Texas Tech University


ncbi_country: China: Shandong

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: truck swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: not known


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-409-G20

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: cow dung compost

ncbi_organism_name: Marilutibacter chinensis

ncbi_submitter: Xinjiang Academy of Agricultural Sciences


ncbi_isolation_source: coriander

ncbi_organism_name: Escherichia coli

ncbi_submitter: U. S. Food and Drug Administraion/NCTR


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: USA: Maryland; Indian Head

ncbi_isolation_source: envrionmental mixture

ncbi_organism_name: Methylobacterium fujisawaense

ncbi_submitter: Texas A&M University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Ureaplasma intestinipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_strain_identifiers: NRRL WC-3869

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_organism_name: Hydrogenobacter thermophilus

ncbi_submitter: Sun Yat-Sen University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Spongiibacter sp.

ncbi_submitter: EMG


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-raw water

ncbi_organism_name: Syntrophus sp. (in: bacteria)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Syntrophia;o__Syntrophales;f__Syntrophaceae;g__Syntrophus;x__unclassified Syntrophus (in: bacteria);s__Syntrophus sp. (in: bacteria)


ncbi_country: China: South China Sea

ncbi_isolation_source: Sponge (Xestosponiga sp. QYP07)

ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Tianjin

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Experimental Hematology, National Clinical Research Center for Blood Disease


ncbi_organism_name: Salmonella sp. 1202_ZJSL19Sal_0414

ncbi_submitter: Zhejiang university


ncbi_country: China: Hohhot

ncbi_isolation_source: Sour horse milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: National Centre for Infectious Diseases


ncbi_assembly_name: Rumen uncultured genome RUG10351

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Lebanon

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: LAU


ncbi_isolation_source: kidney

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: blood

ncbi_submitter: Faculty of Pharmacy, Alexandria University


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Ruminococcus equi

ncbi_submitter: Quadram Institute


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. AF20-7

ncbi_submitter: BGI


ncbi_organism_name: Salmonella sp. SKLX095520


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: EMG


ncbi_country: Nigeria: Ibadan

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_isolation_source: Patient6 sputum

ncbi_submitter: Shenzhen People's Hospital, Shenzhen, China


ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: China CDC


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: New Zealand: Christchurch

ncbi_submitter: University of Canterbury


ncbi_organism_name: Serratia ureilytica


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: gut

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Florida

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Clemson University


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_organism_name: uncultured Rothia sp.


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: South Korea: Jeju province

ncbi_isolation_source: leaves

ncbi_organism_name: Xanthomonas hortorum

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Saprospiraceae bacterium UBA2401


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: USA

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: University of Michigan


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: premature infant gut

ncbi_organism_name: Streptococcus sp. DORA_10

ncbi_submitter: University of California, Berkeley


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 169 - depth 200m

ncbi_organism_name: Moraxellaceae bacterium REDSEA-S38_B3

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Oswaldo Cruz Institute


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 150 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Tehran


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: First Affiliated Hospital, Southern University of Science and Technology


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Methylobacterium sp. NPDC014739

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Yinshan Lead-Zinc Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Citrobacter koseri

ncbi_submitter: SurvCARE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: South Korea

ncbi_isolation_source: pepper soil

ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: Shin's Lab


ncbi_country: USA: California

ncbi_isolation_source: Xylem

ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: UCR


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Viginia Tech


ncbi_organism_name: Adlercreutzia sp. ZJ304

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: CVUAS 30298

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: University of Parma


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Mexico

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UConn Health


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii AB_TG27327

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Viet Nam

ncbi_isolation_source: root

ncbi_organism_name: Bacillus cereus

ncbi_submitter: ENDOBICA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B091;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Canada

ncbi_isolation_source: Rectum

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: ATCC


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Yonsei university college of medicine


ncbi_organism_name: Alkalihalobacillus sp. R86527

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: South Africa

ncbi_isolation_source: termites

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Forestry and Agricultural Biotechnology Institute


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 3.0 m mixolimnion layer of meromictic lake

ncbi_organism_name: Vreelandella aquamarina

ncbi_submitter: Academia Sinica


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Hamilton

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa JD315

ncbi_submitter: University of Ottawa


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_submitter: University of Guelph


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: Kenya

ncbi_organism_name: Prevotella sp. UBA6421

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: University of Michigan Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_organism_name: Rhodobacter sp.


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Clostridioides difficile P25

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Woeseia sp.

ncbi_submitter: EMG


ncbi_submitter: USDA


ncbi_organism_name: Enterococcus xiangfangensis

ncbi_submitter: Northeast Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_organism_name: Salmonella enterica

ncbi_submitter: College of Veterinary Medicine


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Variovorax sp.

ncbi_submitter: University of East Anglia


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: Mozambique

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Megasphaera sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_submitter: Universite Paris Sud


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ohio

ncbi_isolation_source: HANDS

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_isolation_source: soil metagenome

ncbi_organism_name: uncultured Nostocoides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Northern Mariana Islands: Mariana Back-Arc; Illium Vent Field

ncbi_isolation_source: gill tissue

ncbi_organism_name: Alviniconcha hessleri gill endosymbiont

ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__Alviniconcha hessleri gill endosymbiont


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_organism_name: uncultured Synechococcus sp.

ncbi_submitter: EMG


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Poecilobothrus nobilitatus


ncbi_country: United Kingdom: Newcastle upon Tyne

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wenzhou-Kean University: Kean University - Wenzhou Campus


ncbi_organism_name: Actinoplanes nipponensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: India

ncbi_isolation_source: pond

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Guangdong

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_isolation_source: rumen

ncbi_organism_name: Pseudochrobactrum sp. AO18b

ncbi_submitter: University of Georgia


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea: Seoul

ncbi_organism_name: Lactobacillus delbrueckii subsp. delbrueckii

ncbi_submitter: ChunLab, Inc


ncbi_organism_name: Alistipes communis


ncbi_country: China: Qingdao

ncbi_isolation_source: rhizosphere soil (300 mM NaCl treated)

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Tobacco Research Institute of Chinese Academy of Agricultural Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Microcoleus sp. Pol14C2

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_country: Spain: Alicante

ncbi_isolation_source: 0.22 micron fraction from Freshwater Reservoir Amadorio

ncbi_organism_name: Actinobacteria bacterium UBA959

ncbi_submitter: University of Queensland


ncbi_submitter: Colorado State University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Streptomyces sp. NPDC101181

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Aphodosoma sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Aphodosoma;x__unclassified Candidatus Aphodosoma;s__Candidatus Aphodosoma sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Candidatus Aquarickettsia rohweri

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Cronobacter sakazakii

ncbi_strain_identifiers: KubGAU B-268

ncbi_submitter: Kuban State Agrarian University


ncbi_assembly_name: Rumen uncultured genome RUG293

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Heyndrickxia oleronia

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Wolinella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-95

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS LIN-95

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured cyanobacterium


ncbi_isolation_source: not available

ncbi_submitter: SC


ncbi_organism_name: Corynebacterium sp. H113

ncbi_submitter: China CDC


ncbi_organism_name: Streptomyces venezuelae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Snodgrassella alvi


ncbi_country: Peru: Lima

ncbi_isolation_source: livestock

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Andres Bello


ncbi_submitter: The University of Texas Health Sciences Center


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Iran

ncbi_isolation_source: Crown gall

ncbi_organism_name: Agrobacterium burrii

ncbi_strain_identifiers: Rnr

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Veillonella sp.


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Atlantic Ocean

ncbi_isolation_source: water column (SRF) surface water layer

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Curtissiibacteriota;s__Candidatus Curtissbacteria bacterium RIFCSPHIGHO2_01_FULL_40_12


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_assembly_name: Salmonella enterica CVM N31395-SQ v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Streptococcus sp. Marseille-Q0941

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: Insytitute of microbiology and epidemiology


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Zambia

ncbi_isolation_source: leaves

ncbi_organism_name: Caballeronia sp. BR6202001591004

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_isolation_source: Nasal discharge

ncbi_organism_name: Pasteurella multocida subsp. multocida

ncbi_submitter: ICAR National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)


ncbi_country: USA: International Space Station

ncbi_isolation_source: ISS environmental surface

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: South Africa

ncbi_organism_name: Mycolicibacter sinensis

ncbi_submitter: JCVI


ncbi_country: India

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Deparment of Primary Industries NSW

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB6_1A_059

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Semen

ncbi_organism_name: Neisseria flavescens

ncbi_submitter: URMITE


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_country: USA: New York

ncbi_isolation_source: stool from individual BVe

ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China

ncbi_isolation_source: Chicken embryo

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Anhui Academy of Agricutural Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mediterraneibacter gnavus ATCC 29149

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Bavaria

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: China: An abandoned gold mine in Dongfang City; Hainan Province

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Chinese Academy of Tropical Agricultural Sciences


ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Chonnam National University


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Neorhizobium sp. AL 9.2.2

ncbi_submitter: Oregon State University


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Porphyromonadaceae bacterium UBA771

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EBI


ncbi_country: Malaysia: KL

ncbi_isolation_source: gastric biopsy tissue

ncbi_organism_name: Helicobacter pylori UM038

ncbi_submitter: UM-UNSW-MGRC


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: National Cancer Institute - NIH


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis H3005

ncbi_submitter: Broad Institute


ncbi_country: India: Karnataka

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yenepoya University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus spizizenii;x__Bacillus spizizenii ATCC 6633 = JCM 2499


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Paramuribaculum sp.


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Rhodocyclaceae bacterium UBA5533


ncbi_organism_name: Enterococcus sp. AN402

ncbi_submitter: University of Alaska Anchorage


ncbi_country: Japan: Hakone

ncbi_isolation_source: hot spring

ncbi_organism_name: Fischerella thermalis CCMEE 5330

ncbi_strain_identifiers: CCMEE 5330

ncbi_submitter: University of Montana


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Sphingobacterium sp. UBA1897


ncbi_country: Japan

ncbi_isolation_source: lactc acid beverage

ncbi_organism_name: Chryseobacterium shigense

ncbi_submitter: FDA


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Oswaldo Cruz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: China: Shanghai

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Brachyspira sp.


ncbi_organism_name: Streptomyces sp. NPDC059082


ncbi_country: United Kingdom: England

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_organism_name: Paraburkholderia sp. BR14263

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B328;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Swan Lake; Western Gobi Desert

ncbi_isolation_source: Swan Lake; a freshwater lake in western Gobi Desert

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: Institute of Microbiology ASCR


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Pennsylvania

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Antarctica:Livingston Island

ncbi_isolation_source: Antarctic water

ncbi_organism_name: Shewanella livingstonensis

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Frigidibacter sp. MR17.24

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Henan; Yanjin

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: OHSU


ncbi_organism_name: Bacillus haynesii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Actinomyces graevenitzii

ncbi_submitter: University of California, Berkeley


ncbi_country: Viet Nam: Ben Tre

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Science, Viet Nam National University Ho Chi Minh City


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: Pseudomonas parafulva

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Shewanella sp. 10N.286.51.B8

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Shenzhen Children s Hospital

ncbi_isolation_source: synovial fluid

ncbi_submitter: ShenZhen Children's Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Cornell University


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Curtobacterium sp. CT11-45

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Trichococcus flocculiformis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Cyclobacteriaceae bacterium


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Saccharospirillum mangrovi

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: uncultured Sphaerochaeta sp.


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Imala

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University College Cork


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: Ames

ncbi_isolation_source: Ileum

ncbi_organism_name: Turicibacter bilis

ncbi_submitter: USDA ARS


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Halioglobus sp.

ncbi_submitter: Colorado State University


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa:Stellenbosch

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA

ncbi_organism_name: Arsenophonus nasoniae DSM 15247

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Southwest Medical University


ncbi_country: Canada: Alberta

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Dadabacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Zurich


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces sp. NPDC057838

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsCore3_bin-2236

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Hanamia sp.

ncbi_submitter: Zhejiang University


ncbi_country: Austria: Kremesberg 11

ncbi_isolation_source: rumen epithelial tissue

ncbi_organism_name: Campylobacter sp. VBCF_04 NA7

ncbi_strain_identifiers: VBCF_04 NA7

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: secretions

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Fusobacterium perfoetens

ncbi_submitter: AAFC


ncbi_country: China: Luzhou

ncbi_isolation_source: no

ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Florida


ncbi_country: China: Shijiazhuang; Hebei province

ncbi_isolation_source: pickle

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Hebei University of Economics and Business


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Spain: Sierra de Tejeda; Almijara and Alhama Natural Park; Granada

ncbi_organism_name: Longimicrobium terrae

ncbi_submitter: Fundacion MEDINA


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Pennsylvania


ncbi_country: Thailand: Nhong Khai

ncbi_isolation_source: food

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Japan:Iwate; Kanegasaki

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces lydicamycinicus

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Neisseria lactamica

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Porphyromonadaceae bacterium UBA3321

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Mesorhizobium robiniae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Kappaea frigidicola

ncbi_taxonomy: d__Bacteria;p__Candidatus Omnitrophota;c__;o__;f__;g__Candidatus Kappaea;s__Candidatus Kappaea frigidicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;g__Candidatus Kappaea;s__Candidatus Kappaea frigidicola


ncbi_organism_name: Clostridiaceae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Erciyes University


ncbi_country: Egypt: Alexandria

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of East Anglia


ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio jasicida

ncbi_submitter: University of Cambridge


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Solobacterium moorei


ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: India: Hyderabad

ncbi_isolation_source: Raw chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Simiduia aestuariiviva

ncbi_strain_identifiers: CECT 8571


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: ATCC 7039

ncbi_submitter: American Type Culture Collection (ATCC)


ncbi_country: Sweden

ncbi_isolation_source: stool sample

ncbi_submitter: Massey University


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter haemolyticus TG19599

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: Escherichia coli 897

ncbi_submitter: University Medical Center Utrecht


ncbi_country: Denmark

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University & Research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Campylobacter sp. LH-2024

ncbi_submitter: Luxembourg Institute of Science and Technology


ncbi_country: Germany

ncbi_isolation_source: udder acute mastitis

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_country: New Zealand

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Citrobacter sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Kazakhstan: East Kazakhstan Region; Kurgum District; Maraldin Rural District; Kyzyl Agash Village

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: National Center for Biotechnology


ncbi_country: Antarctica: King George Island

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Puniceibacterium sp. IMCC21224

ncbi_submitter: Inha University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Acholeplasmataceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Xinjiang; Taklimakan Desert

ncbi_isolation_source: desert soil

ncbi_organism_name: Cesiribacter sp. SM1

ncbi_submitter: Shandong University


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_submitter: Drexel


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Sinomonas terricola

ncbi_submitter: Guangdong Institute Of Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_organism_name: uncultured Sideroxydans sp.


ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ignavibacterium sp.


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: CENTRO DE INVESTIGACIONES EN BIOQUIMICA CLINICA E INMUNOLOGIA (CIBICI), CONICET, CORDOBA, ARGENTINA


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Medical City


ncbi_submitter: Southern University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;x__unclassified Candidatus Puniceispirillaceae;s__Candidatus Puniceispirillaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-221

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Alphaproteobacteria bacterium UBA6149


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp4 AA15

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp4 AA15

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo, A.C. (CIAD)


ncbi_organism_name: Bacillus cereus group sp. BceL157

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL157


ncbi_isolation_source: marine

ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Caecum

ncbi_organism_name: Parasutterella excrementihominis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA

ncbi_organism_name: Pseudomonas capsici

ncbi_submitter: University of Georgia


ncbi_country: France: Paris

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Kenya: Kajiado County

ncbi_isolation_source: termite gut

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Aga Khan University Hospital


ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: Italy

ncbi_isolation_source: minced meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Denmark: Lyngby

ncbi_isolate: PCA

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: DTU Biosustain


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevundimonas sp. UBA7507

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Saudi Arabia: Thuwal; RO plant located on Red Sea

ncbi_isolation_source: hypersaline brine

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Spain: province of Jaen; nearby Guadalimar (soil) and Granada

ncbi_isolation_source: mixture of soil and sewage sludge compost

ncbi_organism_name: Pseudoduganella umbonata

ncbi_submitter: University of Tuebingen


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford