ncbi_organism_name: Aureimonas ureilytica

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: Russia

ncbi_genome_representation: full

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_assembly_level: Contig

ncbi_country: USA: Maywood; IL

ncbi_organism_name: Corynebacterium aurimucosum

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Esturies of South China

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_country: USA

ncbi_isolation_source: NEUS_A leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_assembly_name: Rumen uncultured genome RUG13276

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: foodproduct with ingredients from different origins

ncbi_isolation_source: food

ncbi_organism_name: Bacillus cereus group sp. BfR-BA-01408

ncbi_submitter: German Federal Institute for Risk Assessment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BfR-BA-01408


gtdb_representative: t

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Mycobacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Thermoanaerobaculaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_country: Colombia: Tuquerres

ncbi_isolation_source: gastric sample

ncbi_organism_name: Helicobacter pylori PZ5080

ncbi_submitter: MIT


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Saccharibacillus sacchari

ncbi_submitter: Rochester Institute of Technology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae;x__Klebsiella pneumoniae subsp. pneumoniae WGLW5


ncbi_submitter: Center for Microbial Communities


ncbi_country: Spain

ncbi_isolation_source: Medical

ncbi_submitter: Instituto de Investigacion Sanitaria y Biomedica de Alicante


ncbi_country: China

ncbi_isolation_source: shrimp strips

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nankai Universigy


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Fujian Province

ncbi_isolation_source: soil

ncbi_organism_name: Micromonospora sp. CB01531

ncbi_submitter: The Scripps Research Institute


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: utum

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Pseudoxanthomonas mexicana


ncbi_organism_name: Streptococcus agalactiae MRI Z1-206

ncbi_submitter: The J. Craig Venter Institute


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas guariconensis

ncbi_submitter: Palacky University Olomouc


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_submitter: China Agricultural University


ncbi_country: China: Helongjiang

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: Malaysia

ncbi_isolation_source: shellfish

ncbi_organism_name: Vibrio sp. OULL4

ncbi_submitter: University of Malaya


ncbi_country: China: Longli Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O111:NM;x__Escherichia coli O111:NM str. 2009C-4006


ncbi_country: Japan: Miyazaki

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio jasicida

ncbi_submitter: Academia Sinica


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Hunan

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_assembly_level: Chromosome

ncbi_country: India: Himachal Pradesh

ncbi_organism_name: Clostridium tetani

ncbi_strain_identifiers: Harvard 49205

ncbi_submitter: Serum Institute of India


ncbi_country: USA

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Florida


ncbi_country: Denmark: Kalundborg

ncbi_isolation_source: activated sludge from Kalu_18-Q3-R12-55

ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_organism_name: Arcanobacterium bovis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: University of Antwerp


ncbi_organism_name: Lysobacter sp. CA196

ncbi_submitter: University of Bologna


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Achromobacter kerstersii

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Ectobacillus sp.

ncbi_submitter: Cornell University


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Saudi Arabia: KAUST

ncbi_isolation_source: anammox marine column reactor biofilm on non-woven sheet

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: KAUST


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: BLR-DV

ncbi_submitter: Belarusian State Medical University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Regensburg


ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_country: Slovenia: Ljubljana

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: environmental: river near WWTP effluent

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_country: Colombia

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: Brazil

ncbi_isolation_source: surgical drain

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Blautia producta

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Yushu Tibetan Autonomous Prefecture; Qinghai Province

ncbi_isolation_source: plants of Tibetan Plateau

ncbi_organism_name: Nocardioides sp. 503

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: University of Texas at Austin


ncbi_country: Nigeria

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. NG1


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_country: Italy: Florence

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium paraense

ncbi_submitter: University of Trento


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: CAU


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_submitter: McGill University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: continuous bioreactor

ncbi_organism_name: Acidithiobacillus caldus

ncbi_submitter: Fundacion Ciencia y Vida


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Lentilactobacillus parabuchneri

ncbi_submitter: University of Bern


ncbi_organism_name: Thermoclostridium sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Phocaeicola sp.


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Duncaniella muris


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: France: Limoges

ncbi_isolation_source: Siphon

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universite Paris Sud


ncbi_country: China: Luzhou

ncbi_isolation_source: Wound secretion

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Chromobacterium piscinae

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Isoptericola variabilis

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Corynebacterium macclintockiae

ncbi_submitter: Toho university


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: Shanghai MasScience Genomics Core


gtdb_type_species_of_genus: t

ncbi_organism_name: Traorella massiliensis

ncbi_refseq_category: reference genome

ncbi_submitter: URMITE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_organism_name: Parvibaculaceae bacterium


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Canada: Winnipeg; Manitoba

ncbi_isolation_source: agriculture waste

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Manitoba


ncbi_country: USA: New York

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_isolation_source: Milk powder

ncbi_organism_name: Bacillus cereus

ncbi_submitter: TU Muenchen


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: BGI


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Microvirga sp.

ncbi_submitter: University of California Berkeley


ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Universidade Federal de Pelotas


ncbi_country: China: Zhaoqing

ncbi_isolation_source: sushi

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Center for Disease Control and Prevention of zhaoqing


ncbi_organism_name: Leclercia adecarboxylata


ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Canada

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Tonga: Lau Basin

ncbi_isolation_source: gill tissue; hydrothermal vent

ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Wenzhouxiangella sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: metagenome

ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Pseudomonas putida


ncbi_assembly_name: Rumen uncultured genome RUG14573

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: South Korea

ncbi_isolation_source: Human feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Kyung Hee University


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Elizabethkingia occulta

ncbi_strain_identifiers: ZSQ

ncbi_submitter: Enze Hospital


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: UIUC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Ralstonia wenshanensis

ncbi_submitter: College of Resources and Environmental science


ncbi_organism_name: Ruthenibacterium lactatiformans


ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Comenius University Science Park


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Kitasatospora purpeofusca

ncbi_submitter: Institute for Integrative Biology of the Cell


ncbi_organism_name: Desulfovermiculus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Lishu

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Polyangiaceae bacterium

ncbi_submitter: CAU


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_country: China: Shenzhen

ncbi_organism_name: Blautia sp. AF26-2

ncbi_submitter: BGI


ncbi_country: China: Gaomi

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Serratia marcescens

ncbi_submitter: CSIR-IIIM


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_assembly_name: freshwater MAG --- Ja2_bin-0927

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: blood culture

ncbi_organism_name: Trueperella bernardiae

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Colwellia sp. MB3u-22

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Antarctica: Eastern Antarctica; Mount Seuss

ncbi_isolate: MSU bin55

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: MSU bin55

ncbi_submitter: Monash University


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_submitter: National Institute of Infectious Diseases


ncbi_isolation_source: retailed food

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Center for Food Safety Risk Assessment


ncbi_isolation_source: Surface soil

ncbi_organism_name: Paenibacillus pinisoli

ncbi_submitter: IRNAS-CSIC


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: brewery environment

ncbi_organism_name: Pediococcus claussenii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: Cincinnati; Ohio

ncbi_isolation_source: drinking water

ncbi_organism_name: Mycobacteroides immunogenum

ncbi_submitter: US EPA


ncbi_organism_name: Paracraurococcus sp.

ncbi_submitter: Iowa State University


ncbi_isolation_source: porcine rectal swab

ncbi_organism_name: Chlamydia suis

ncbi_submitter: Functional Genomics Genter Zurich


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium UBA6480

ncbi_submitter: University of Queensland


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Mycobacterium kansasii

ncbi_submitter: Forschungszentrum Borstel, Germany


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_submitter: University of Wyoming


ncbi_organism_name: Paremcibacter congregatus


ncbi_organism_name: Aminomonas paucivorans

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Russia

ncbi_isolation_source: 4th dilution order of 9-month-old decomposing birch leaves

ncbi_organism_name: Methyloversatilis sp.

ncbi_submitter: ARRIAM


ncbi_submitter: TIGR


ncbi_organism_name: Enterococcus sp. DIV0174

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25569_2

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured Kingella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Mesotoga sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: human gut

ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: UZ Gent


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Acinetobacter sp. UBA3461

ncbi_submitter: University of Queensland


ncbi_organism_name: Ponticoccus sp. SC6-64

ncbi_submitter: Shantou University


ncbi_country: Australia: WA; Brokton

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. BR1-1-3

ncbi_submitter: Curtin University


ncbi_assembly_name: Rumen uncultured genome RUG10653

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Porticoccus sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Listeria swaminathanii

ncbi_submitter: University of Tennessee


ncbi_organism_name: Sphingobium abikonense

ncbi_submitter: Tang lab


ncbi_country: USA: Philadelphia; PA

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Acidothermaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. M10

ncbi_submitter: School of Life Science and Biotechnology


ncbi_organism_name: Monoglobaceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Germany: Dresden

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Leibniz Institute DSMZ


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: PA

ncbi_isolation_source: fecal cow (Bos taurus)

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Qipengyuania pacifica

ncbi_submitter: Xiamen University


ncbi_organism_name: Adlercreutzia sp.


ncbi_organism_name: Flavobacterium sp. LB2P44


ncbi_organism_name: Gimesia chilikensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: 2nd Faculty of Medicine and Motol University Hospital


ncbi_organism_name: Gardnerella sp. DNF00257

ncbi_submitter: Fred Hutch


ncbi_organism_name: Dorea sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Pseudarthrobacter oxydans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: USDA-ARS


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: HKUST


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Instituto de Higiene e Medicina Tropical - Universidade Nova de Lisboa


ncbi_organism_name: Gemmatimonas aurantiaca

ncbi_submitter: University of South Africa


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of Fribourg


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: Paraburkholderia silvatlantica

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pakistan: Punjab

ncbi_isolation_source: infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Enterorhabdus sp.

ncbi_submitter: EMG


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: India: Sativali

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Telluria sp.

ncbi_submitter: Zhejiang University


ncbi_country: Chile: Region de Los Lagos

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: USDA-ARS


ncbi_country: Mongolia: south-western shore of Lake Khuvsgul

ncbi_isolation_source: root nodule

ncbi_organism_name: Bosea caraganae

ncbi_submitter: ARRIAM


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter asburiae


ncbi_country: China: Jinhua

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. JH32

ncbi_submitter: Jinhua Central Hospital


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University


ncbi_country: India: Kerala; Thiruvananthapuram; Trivandrum Medical College; Chalakkuzhi

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University Hospital Basel


ncbi_assembly_name: Rumen uncultured genome RUG12669

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: ISI 983

ncbi_isolate: ISI 983

ncbi_isolation_source: Protein powder

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: ISI 983

ncbi_submitter: AARHUS UNIVERSITY, DEPARTMENT OF FOOD SCIENCE


ncbi_submitter: Center for Microbial Communities


ncbi_country: Ghana: Korle Bu

ncbi_isolation_source: nose

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Noguchi Memorial Institute for Medical Research, University of Ghana


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: EMG


ncbi_submitter: UNIVERSITY OF WARWICK

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: fermentation

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: Czech Republic: Prague

ncbi_isolation_source: wound swab (lower limb)

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Charles University in Prague


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Enterococcus sp. 22-H-5-01

ncbi_submitter: Michigan State University


ncbi_organism_name: Cellvibrio sp.

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Universite de Limoges


ncbi_organism_name: Candidatus Ornithomonoglobus sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Ornithomonoglobus;x__unclassified Candidatus Ornithomonoglobus;s__Candidatus Ornithomonoglobus sp.


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Salinisphaera sp. UBA1666


ncbi_country: USA

ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: State of Palestine: Nablus

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolate: wAra

ncbi_isolation_source: total DNA from 20 embryos

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wAra

ncbi_submitter: MRC-UNIVERSITY OF GLASGOW CENTRE FOR VIRUS RESEARCH


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Hungary: Zempln Mountain

ncbi_isolation_source: caecum

ncbi_organism_name: Leuconostoc suionicum

ncbi_submitter: Hungarian University of Agriculture and Life Sciences


ncbi_organism_name: Brachyspira intermedia

ncbi_submitter: Animal and Plant Health Agency


ncbi_organism_name: Asaia platycodi JCM 25414

ncbi_submitter: The University of Tokyo


ncbi_country: Germany

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Treponema sp. OMZ 799

ncbi_strain_identifiers: OMZ 799


ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: MPI for marine Microbiology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_country: China

ncbi_submitter: Yangzhou University


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Chile

ncbi_isolation_source: kelp gull (Larus dominicanus)

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Spain

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital 12 de Octubre


ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio sp. AR640

ncbi_submitter: Universidad de Sevilla


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: yogurt

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Applied Microbiology, Bioproduction, Department of Science, Technology and Innovation, Kobe University


ncbi_country: China: Hongkong

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BcHK124

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BcHK124


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium GW2011_GWA2_56_11


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: University of Chicago


ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia sp. WS2690

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Medical Center Hamburg-Eppendorf


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: University of East Anglia


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: sewage


ncbi_organism_name: Escherichia coli 907713

ncbi_submitter: Washington University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Leibniz Institute DSMZ-German Collection of Microrganisms and Cell Cultures


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Back Swab

ncbi_organism_name: Oceanobacillus kimchii

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Urbana


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: bacterium


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lentimonas sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__Verrucomicrobiota incertae sedis;g__Lentimonas;x__unclassified Lentimonas;s__Lentimonas sp.


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: Vellore Institute of Technology, Vellore


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Lund University


ncbi_organism_name: Bacillus stercoris

ncbi_strain_identifiers: Be Uniclon 01

ncbi_submitter: UFMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: Bangladesh: Chittagong

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Singapore

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Singapore General Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: PA

ncbi_isolation_source: Market Swine

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: CVM N60324F

ncbi_submitter: FDA


ncbi_isolation_source: marine metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Greifswald

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: IL

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus sp. AFS098217

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS098217


ncbi_country: South Korea: Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptosporangium sp. NBC_01469

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhejiang

ncbi_isolation_source: pickled radish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Vibrio furnissii

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_organism_name: Streptomyces europaeiscabiei

ncbi_strain_identifiers: NCPPB 4064

ncbi_submitter: University of Exeter


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Mesorhizobium ciceri

ncbi_submitter: Murdoch University


ncbi_country: Canada

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: uncultured Planktomarina sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0345

ncbi_submitter: Broad Institute


ncbi_country: Australia: Sydney; Botany Sands Aquifer

ncbi_isolation_source: dichloromethane-fermenting enrichment culture inoculated with organochlorine-contaminated groundwater

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thiogranum longum

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D10_bin-0438

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Dorea longicatena

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Manitoba;Winnipeg

ncbi_isolation_source: stool

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 4 / D; 5m depth; 0.2 filter

ncbi_organism_name: Bacteroidetes bacterium GWD2_40_43

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium GWD2_40_43


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Brachybacterium sp.

ncbi_submitter: EMG


ncbi_country: New Zealand: Dunedin

ncbi_isolation_source: cystic fibrosis patient

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Gilvibacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Mash

ncbi_organism_name: Pediococcus acidilactici

ncbi_strain_identifiers: ATCC 8042

ncbi_submitter: Seoul National University


ncbi_country: USA: Salt Lake City

ncbi_organism_name: Treponema brennaborense

ncbi_submitter: Cleveland Clinic


ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii AB_1595-8

ncbi_submitter: Translational Genomics Research Institute


ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: University of Queensland


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_country: Australia: WA; Oasis Farms

ncbi_organism_name: Mesorhizobium sp. WSM4887

ncbi_submitter: Murdoch University


ncbi_country: France: Perigueux

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: CHU de Rennes


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacillus sp. DWP2-2-2

ncbi_submitter: Institute of Tibetan Plateau Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DWP2-2-2


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Toho University


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Prevotella sp.


ncbi_country: USA: DC; Washington

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Treponema pallidum subsp. pallidum

ncbi_submitter: McGovern Medical School, Univ. of Texas Health Science Center at Houston


ncbi_country: Brazil: Rondonia

ncbi_isolation_source: Amazon soil (pasture)

ncbi_organism_name: Mucilaginibacter sp. PPCGB 2223

ncbi_strain_identifiers: PPCGB 2223

ncbi_submitter: Universidade Catolica de Brasilia


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Atopobium sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Mesotoga sp.

ncbi_submitter: University of Waterloo


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_assembly_name: Vibrio sp. strain Evd11

ncbi_isolate: Vibrio sp. strain Evd11

ncbi_isolation_source: Gorgonian coral

ncbi_organism_name: Vibrio sp. Evd11

ncbi_strain_identifiers: Vibrio sp. strain Evd11

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Germany: Langen

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Norwegian Veterinary Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Atlantic Ocean: Sargasso Sea; BATS

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by MDA; marine water

ncbi_organism_name: SAR86 cluster bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: human

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2740

ncbi_submitter: University of Queensland


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Methyloprofundus sp.

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Tarim University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- AM-2014-D3_bin-133

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Center for Bioinformatics


ncbi_country: Pacific Ocean: Mexico; Pescadero Basin

ncbi_isolation_source: marine hydrothermal sediment

ncbi_organism_name: Thermosipho sp. (in: thermotogales)

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho;x__unclassified Thermosipho (in: thermotogales);s__Thermosipho sp. (in: thermotogales)


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of British Columbia


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: uncultured Enterobacteriaceae bacterium


ncbi_submitter: University of Antwerp


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Lentisphaerae bacterium GWF2_57_35

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerae bacterium GWF2_57_35


ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chiang Mai University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Laboratory for Foodborne Zoonoses


ncbi_organism_name: Acidovorax sp.


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: Brazil: Sao Paulo

ncbi_isolate: LvStB

ncbi_isolation_source: beetle eggs collected in soil in soy/coffee plantations

ncbi_organism_name: Burkholderia gladioli

ncbi_strain_identifiers: LvStB

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: USA: NY; NY

ncbi_isolation_source: Genital tract

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Portugal

ncbi_isolation_source: bovine udder

ncbi_organism_name: Streptococcus dysgalactiae


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 418

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 2478

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnoclostridium sp. UBA7153

ncbi_submitter: University of Queensland


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Phage Research Center, Liaocheng University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_country: China: Shanghai

ncbi_isolation_source: feed

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou University


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Xanthomonas campestris

ncbi_submitter: INRAE


ncbi_country: Canada

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swansea University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Telangana; Patancheru

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: bacterium


ncbi_country: Thailand

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii


ncbi_isolation_source: 83-year old woman with a hip prosthesis infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: LNCC


ncbi_country: Russia: Nizhniy Novgorod

ncbi_isolation_source: burn wound surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Nitrospirillum viridazoti

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.


ncbi_assembly_name: freshwater MAG --- LaPlata-1m-b_bin-679

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: New York

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Duncaniella muris


ncbi_country: South Korea: Korea Research Institute of Bioscience and Biotechnology (KRIBB); Daejeon

ncbi_isolation_source: feces

ncbi_organism_name: Heminiphilus faecis


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Mycobacterium tuberculosis 43-16836

ncbi_submitter: National Center for Genetic Engineering and Biotechnology


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Beef Wors

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Rhizobium sp. BK347

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: South San Francisco; California

ncbi_isolation_source: pond R1 soil

ncbi_organism_name: Marivita sp.


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: St. Louis

ncbi_isolation_source: endovascular

ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Georgia


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: EMG


ncbi_country: China

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_country: Australia: Port Lincoln

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_strain_identifiers: CSP DAM2

ncbi_submitter: The University of Queensland


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: Phytoplankton seston > 100 micron diameter

ncbi_organism_name: Microcystis sp. 53602_E8

ncbi_submitter: University of Michigan


ncbi_organism_name: Pseudomonas fulva


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_country: USA: CA

ncbi_isolation_source: frozen vegetable

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycetocola sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Davidson County; Tennessee

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University at Buffalo


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA3855

ncbi_submitter: University of Queensland


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Helicobacter acinonychis

ncbi_submitter: University of Gothenburg


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: alginate 40-100 m particle (artificial) late colonization

ncbi_organism_name: Zobellia sp. B3R18

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Blautia obeum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Burkholderia pseudomallei


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Australia: Mole Creek; Tasmania

ncbi_isolation_source: oral cavity of healthy tasmanian devil

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_country: USA: San Diego; Quivera Basin

ncbi_isolation_source: Tubeworm

ncbi_organism_name: Pseudoalteromonas luteoviolacea

ncbi_submitter: San Diego State University


ncbi_country: Spain: Lebrija

ncbi_isolation_source: marsh soil; rhizosphere of the halophyte Arthrocnemum macrostachyum

ncbi_organism_name: Roseibium salinum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Auribacterota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;x__unclassified Candidatus Auribacterota;s__Candidatus Auribacterota bacterium


ncbi_country: Poland

ncbi_isolation_source: tomato roots

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: EXCALIBUR


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Angelakisella sp.


ncbi_country: Slovenia: Ljubljana

ncbi_isolation_source: Oropharinx

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Instituto de Patologia Vegetal CIAP-INTA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_isolation_source: intestinal content

ncbi_organism_name: Helicobacter sp.

ncbi_submitter: ChinaCDC


ncbi_organism_name: uncultured Abiotrophia sp.

ncbi_submitter: EMG


ncbi_organism_name: Polynucleobacter necessarius

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Brachybacterium sp. AOP35-5H-19

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute of Chemistry, National Autonomous University of Mexico (UNAM)


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejianglab


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Crystallibacter crystallopoietes

ncbi_submitter: University of Salamanca


ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_organism_name: Sporosarcina sp. FA15

ncbi_submitter: US Army Corps of Engineeers


ncbi_organism_name: Micromonospora andamanensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Netherlands

ncbi_isolation_source: Secondary rapid sand filter

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Streptomyces hydrogenans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Pseudobutyricicoccus;x__environmental samples;s__uncultured Candidatus Pseudobutyricicoccus sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: France

ncbi_isolation_source: Jugular catheter

ncbi_organism_name: Mammaliicoccus fleurettii

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Luzhou

ncbi_isolation_source: Vaginal secretion

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Southwest Medical University


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Muribaculum sp.

ncbi_submitter: San Diego State University


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0026

ncbi_isolation_source: lake water

ncbi_organism_name: Enhydrobacter aerosaccus

ncbi_submitter: BILS


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Zhejiang

ncbi_isolation_source: meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_assembly_name: IMG-taxon 2663762798 annotated assembly

ncbi_organism_name: Geopseudomonas sagittaria

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Limosilactobacillus reuteri


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_country: Australia

ncbi_isolation_source: intestinal biopsy

ncbi_organism_name: Campylobacter concisus UNSWCD

ncbi_strain_identifiers: UNSWCD

ncbi_submitter: University of New South Wales


ncbi_country: Switzerland: Bern

ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: University of Bern


ncbi_country: Mexico

ncbi_isolation_source: Bronchial

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: UNAM


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_submitter: KEMRI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: China: Tibet

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: passaging

ncbi_organism_name: Enterobacter mori

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Segatella hominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Chicken heart (Gallus gallus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: Mississippi State University


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: nasal sample

ncbi_organism_name: Pasteurella multocida 1500E

ncbi_submitter: Moredun Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_submitter: Universidade Federal do Rio Grande do Sul


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Teagasc


ncbi_country: USA

ncbi_isolation_source: NEUS_E leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Anaerostipes sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Cancer Institute - NIH


ncbi_assembly_name: Alcanivorax dieselolei strain KS-293

ncbi_isolation_source: sea water

ncbi_organism_name: Alloalcanivorax xenomutans

ncbi_submitter: UNIMI


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Point Barrow; Alaska

ncbi_isolation_source: bottom of first year landfast sea ice

ncbi_organism_name: Colwellia sp. BRX9-1

ncbi_submitter: University of Alaska Fairbanks


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Halomonas sp. GFAJ-1

ncbi_strain_identifiers: Halomonas sp. GFAJ-1

ncbi_submitter: Wuhan University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: University of Zurich


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nagoya University


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: National Institute of Technology and Evaluation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. ozaenae;x__Klebsiella pneumoniae subsp. ozaenae NBRC 105683


ncbi_assembly_name: freshwater MAG --- MJ110629A_bin-188

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_strain_identifiers: LT2 KO STM1209

ncbi_submitter: University of California at Davis


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Paenibacillus glucanolyticus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Bacillus safensis

ncbi_submitter: First Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Ottowia sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Serratia entomophila

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV031

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Pseudomonas sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_country: China: Chishui River; Guizhou Province

ncbi_isolation_source: freshwater

ncbi_organism_name: Rhodoferax bucti

ncbi_submitter: Beijing University of Chemical Technology


ncbi_country: Malaysia

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Malaya


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Japan

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Brazil

ncbi_isolation_source: chicken carcass

ncbi_submitter: Universidade de Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: New Zealand: Palmerston North

ncbi_isolation_source: spoiled uncooked beef

ncbi_organism_name: Clostridium sp. FP1

ncbi_submitter: AgResearch


ncbi_organism_name: Amycolatopsis sp. NPDC059090

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Polyangiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Flectobacillus sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: UNITED STATES ARMY MEDICAL RESEARCH DIRECTORATE-KENYA


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptococcus sp. V728

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptomyces albidoflavus


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 2025EL-00057


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:768

ncbi_submitter: DTU


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Bacillus subtilis

ncbi_strain_identifiers: GDMCC 1.131

ncbi_submitter: Guangdong Academy of Sciences


ncbi_country: Poland

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: IBB PAS


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Bosnia and Herzegovina: Pale

ncbi_isolation_source: Traditional fresh soft cheese

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Institute of Molecular Genetics and Genetic Engineering, University of Belgrade


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: McGill University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: EMG


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Bizionia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: The University of Hong Kong


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Bacillus albus

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stenotrophomonas sp. UBA6759

ncbi_submitter: University of Queensland


ncbi_isolation_source: Cat

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University Hospital Basel


ncbi_country: USA: FL

ncbi_isolation_source: water

ncbi_submitter: New York State Dept. of Health - Wadsworth Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gaminara


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Mesoaciditogaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_assembly_name: freshwater MAG --- MJ120827B_bin-553

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY