ncbi_country: China

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Chromosome

ncbi_assembly_name: Simulans

ncbi_genome_representation: full

ncbi_isolate: Staphylococcus simulans ATCC 27848

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: Staphylococcus simulans ATCC 27848

ncbi_submitter: UNIVERSITY OF LIVERPOOL

ncbi_type_material_designation: assembly from type material


ncbi_assembly_level: Contig

ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Granulicatella sp. 19428wC4_WM01

ncbi_submitter: King's College London


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: EMG


ncbi_assembly_level: Scaffold

ncbi_organism_name: Atlantibacter hermannii

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Arthrobacter sp. MA-N2

ncbi_submitter: DOE Joint Genome Institute


gtdb_representative: t

ncbi_country: Cameroon: Northern Cameroon

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasma sp.


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: USA: Detroit; MI

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: University of Maine


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; UV layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Campylobacter sp. LH-2024

ncbi_submitter: Luxembourg Institute of Science and Technology


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea: Seoul

ncbi_isolation_source: aphid on Hibiscus syriacus

ncbi_organism_name: Buchnera aphidicola (Aphis gossypii)

ncbi_strain_identifiers: KR

ncbi_submitter: InfoBoss Research Center


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: France

ncbi_refseq_category: reference genome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Paenibacillaceae;g__Paenibacillus;s__Paenibacillus massiliensis;x__Paenibacillus massiliensis 2301065 = DSM 16942


ncbi_country: Russia: Astrakhan Region; Krasnoyarsk District

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute 'Microbe'


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Acidovorax sp. 16-64-162


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology, Academy of Military Medical Sciences (AMMS)


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: Antarctica: Livingston island

ncbi_organism_name: Arthrobacter sp. AL05

ncbi_submitter: Sofia University "St. Kliment Ohridski"


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Candidatus Marisimplicoccus sp.

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Cryomorphaceae;g__Candidatus Marisimplicoccus;x__unclassified Candidatus Marisimplicoccus;s__Candidatus Marisimplicoccus sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Svalbard

ncbi_isolation_source: sea water

ncbi_organism_name: Pseudoalteromonas sp. NSLLW24

ncbi_submitter: Shandong University


ncbi_country: USA: Ohio; Old Woman Creek delta

ncbi_isolation_source: wetland soil

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: faece

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Flavobacterium crassostreae

ncbi_submitter: Korea University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli FVEC1465

ncbi_submitter: Broad Institute


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: [Clostridium] methylpentosum DSM 5476

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;s__[Clostridium] methylpentosum;x__[Clostridium] methylpentosum DSM 5476


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: P2 JHB IV

ncbi_submitter: University of Pretoria


ncbi_country: Australia

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Microbiological Diagnostic Unit


ncbi_country: Japan

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia similis


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Phasia obesa


ncbi_organism_name: Pseudomonas kuykendallii


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Seine River

ncbi_isolation_source: water

ncbi_organism_name: Mycolicibacterium fallax

ncbi_submitter: University of Trento


ncbi_country: Botswana: Gaborone

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Corynebacterium pseudodiphtheriticum

ncbi_submitter: Duke University


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM23

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: Mexico: Sinaloa

ncbi_isolation_source: Snapper liver

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Naval Research Laboratory


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_assembly_name: Rumen uncultured genome RUG12918

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: United Kingdom

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Streptomyces sp. DT203

ncbi_submitter: University of Liege


ncbi_country: China: Shanxi

ncbi_isolation_source: patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University People's Hospital


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Birkenhead


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Gemmatimonas phototrophica

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Minnesota

ncbi_isolation_source: feces

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Germany: Dresden

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_organism_name: Psychromonas sp.

ncbi_submitter: University of East Anglia


gtdb_type_species_of_genus: t

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Levilactobacillus;s__Levilactobacillus brevis;x__Levilactobacillus brevis ATCC 14869 = DSM 20054


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Lacipirellulaceae bacterium

ncbi_submitter: University of California Davis


ncbi_country: Panama: Bocas del Toro; Inner Solarte

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Salinibacter sp.

ncbi_submitter: Diversite, Ecologie et Evolution Microbienne, Unite Ecologie Systematique et Evolution


ncbi_organism_name: Escherichia coli

ncbi_submitter: national health research institutes


ncbi_organism_name: Parvicellaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Streptomyces chartreusis

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Aquirufa echingensis

ncbi_submitter: University of Innsbruck


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EMG


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Candidatus Fimivicinus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Fimivicinus;x__unclassified Candidatus Fimivicinus;s__Candidatus Fimivicinus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Bacteroides uniformis


ncbi_isolate: SPRUCE 82

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_strain_identifiers: SPRUCE 82


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV033

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: New Zealand

ncbi_isolation_source: Diphtheritic lesion

ncbi_organism_name: Corynebacterium sp. 50A

ncbi_submitter: Northumbria University


ncbi_country: USA: UC Davis Medical Center

ncbi_isolation_source: Blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: UC Davis


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Nitrospirales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Thermolongibacillus altinsuensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Pleurocapsa sp.

ncbi_submitter: Rutgers University


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_country: Netherlands

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Acholeplasmatales bacterium DTU067


ncbi_assembly_name: Salmonella enterica CVM N50448 v1.0

ncbi_country: USA: WA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: USA

ncbi_isolation_source: Tissue Right Shoulder HUMERAL MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhodoferax sp. OV413

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter chuandaensis

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: France: Paris

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0770

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_country: China: Haerbin

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: CAU


ncbi_organism_name: Anaerovibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Latilactobacillus sakei

ncbi_submitter: Jiangnan University


ncbi_country: France

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: water

ncbi_organism_name: Nitrospiraceae bacterium UBA1546

ncbi_submitter: University of Queensland


ncbi_country: South Korea: Bundang

ncbi_isolation_source: kimchi

ncbi_organism_name: Leuconostoc garlicum

ncbi_submitter: KFRI


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Brazil: Sao Paulo; Ribeirao Preto

ncbi_isolation_source: Tracheal Secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ribeirao Preto Medical School - USP


ncbi_isolation_source: Ileum

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Jilin

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Tamazula River; Sanalona dam

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Phycisphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: AAFC


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Uppsala University


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: Czech Republic: Klicava reservoir

ncbi_isolation_source: drinking water reservoir

ncbi_organism_name: Limnohabitans sp. 2KL-1

ncbi_submitter: Biology Centre CAS


ncbi_country: USA: Maunalua Bay; Oahu; Hawaii

ncbi_isolation_source: accessory nidamental gland

ncbi_organism_name: Leisingera sp. ANG59

ncbi_submitter: University of Connecticut


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Paraguay: Piribebuy

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_country: India: Pachmarhi

ncbi_isolation_source: hotspring

ncbi_organism_name: Gulbenkiania mobilis

ncbi_submitter: IISER Bhopal


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Fokinia solitaria

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Fokinia;s__Candidatus Fokinia solitaria


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_organism_name: Sorangium sp. So ce185

ncbi_strain_identifiers: So ce185

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce185


ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__unclassified Candidatus Marinamargulisbacteria;s__Candidatus Marinamargulisbacteria bacterium


ncbi_organism_name: Desulfococcaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Ectopseudomonas alcaliphila

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Ruminococcus sp.


ncbi_organism_name: Brevibacillus formosus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured bacterium


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Southern California


ncbi_country: Ethiopia: Tigray; Central Tigray

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_assembly_name: Salmonella enterica CVM N51263 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: China: Wenzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Brucella intermedia

ncbi_submitter: Wenzhou Medical University


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Lund University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_country: Sri Lanka: Kurunegala

ncbi_isolation_source: Exorhizosphere rice

ncbi_organism_name: Pseudomonas taiwanensis

ncbi_submitter: KU Leuven


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: freshwater MAG --- Loc080925-5-5m_bin-0562

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_assembly_name: De novo assembly of KCRI isolate R0007_377

ncbi_isolation_source: wound swab sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_isolation_source: Fecal samples

ncbi_organism_name: Escherichia coli

ncbi_submitter: INSERM UMR 1137


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Georgia

ncbi_isolation_source: pig feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Listeria swaminathanii

ncbi_submitter: University of Tennessee


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_68 WWTPs effluent

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Melioribacter sp.

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Ignavibacteriales bacterium


ncbi_country: USA: California

ncbi_submitter: University of Maryland, College Park


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Singapore

ncbi_isolation_source: not known


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus pneumoniae SPN061370

ncbi_submitter: The Wellcome Trust Sanger Institute


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Cetobacterium sp.

ncbi_submitter: EMG


ncbi_country: China: Qinghai

ncbi_isolation_source: river bed soil

ncbi_organism_name: Tessaracoccus sp. MC1627

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Russia

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_organism_name: Parasphingorhabdus flavimaris

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1271651

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Norway: Bergen

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Marine Research


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Roseobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: acid gruel

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: South Korea:Ginseng field

ncbi_isolation_source: soil

ncbi_organism_name: Allopusillimonas ginsengisoli

ncbi_submitter: Key Laboratory of Marine Biogenetic Resources State of Oceanic Administration


ncbi_country: China: Hainan

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: Ocean University of China


ncbi_submitter: National Medicines Institute


ncbi_country: Japan:Shizuoka; Hamamatsu; Shizuoka University

ncbi_organism_name: Stenotrophomonas pavanii

ncbi_strain_identifiers: Y

ncbi_submitter: Shizuoka University


ncbi_organism_name: Nocardia sp. NPDC050712

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_assembly_name: Xag

ncbi_country: Thailand

ncbi_submitter: Kasetsart University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines;x__Xanthomonas citri pv. glycines str. 12-2


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: Tissue

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: Portugal: Porto metropolitan area; Portugal

ncbi_isolation_source: Chlorella  dietary supplement; powder form

ncbi_organism_name: Pseudanabaenaceae cyanobacterium LEGE 13415

ncbi_submitter: CIIMAR


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_country: Brazil: Sao Paulo; Novo Castilho

ncbi_isolation_source: tissue sample

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Xanthomonas translucens pv. undulosa

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. undulosa


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: catheter

ncbi_organism_name: Brevibacterium luteolum

ncbi_submitter: Loyola University Chicago


ncbi_submitter: Chalmers University of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_organism_name: Mycobacterium sp. OAE908

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterobacter cancerogenus ATCC 35316

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cancerogenus;x__Enterobacter cancerogenus ATCC 35316


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Bielefeld University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Enterocola sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Enterocola;x__unclassified Candidatus Enterocola;s__Candidatus Enterocola sp.


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Synechococcus sp. R6-6

ncbi_submitter: University of Montana


ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: uncultured Granulosicoccaceae bacterium


ncbi_organism_name: Bacteroides uniformis


ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Salmonella sp. SKLX085122

ncbi_submitter: Zhejiang university


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Erciyes Univ. Faculty of Veterinary Medicine


ncbi_organism_name: Enterococcus sp. DIV0294

ncbi_submitter: Broad Institute


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Singapore

ncbi_isolation_source: anaerobic digester - waste activated sludge

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_assembly_name: freshwater MAG --- Kiruna2_bin-1424

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Arthrobacter sp. NPDC058127

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alsobacter sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Candidatus Pelethomonas sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Pelethomonas;x__unclassified Candidatus Pelethomonas;s__Candidatus Pelethomonas sp.


ncbi_isolation_source: ruminant gastrointestinal tract


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_assembly_name: WBD

ncbi_isolation_source: WBD-infected periwinkle

ncbi_organism_name: Candidatus Phytoplasma tritici

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrI (Aster yellows group);s__Candidatus Phytoplasma tritici


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Ocean University of China - Yushan Campus


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Streptomyces sp. NPDC056161


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Aliivibrio salmonicida

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: addis ababa university


ncbi_country: USA:New York; BronxPark

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: enrichment culture

ncbi_organism_name: Clostridium vincentii

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: Enemella sp. A6

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_country: USA: WI

ncbi_isolation_source: Skin/Wound

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Wisconsin State Laboratory of Hygiene


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: Small intestine

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Butyricicoccus sp. AF10-3

ncbi_submitter: BGI


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: Russia: Rostov-on-Don

ncbi_isolation_source: from waters of the river Temernik in Rostov-on-Don

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: RARI


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_organism_name: Latilactobacillus sakei

ncbi_strain_identifiers: NBRC 3541

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis


ncbi_assembly_name: Rumen uncultured genome RUG13196

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_submitter: Quadram Institutte


ncbi_country: China

ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter towneri


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: kaohsiung medical university


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Ontario Veterinary College, University of Guelph


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Lactiplantibacillus sp. YT640

ncbi_submitter: Sichuan Normal University


ncbi_organism_name: Marinobacter alexandrii

ncbi_submitter: University of Southern California


ncbi_organism_name: Rhizobium favelukesii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia

ncbi_isolation_source: soil

ncbi_strain_identifiers: DSM 525

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium pasteurianum;x__Clostridium pasteurianum DSM 525 = ATCC 6013


ncbi_organism_name: Pseudomonas knackmussii B13

ncbi_submitter: CHUV-UNIL


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Sphingomonadales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Ignavibacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;x__unclassified Ignavibacteriota;s__Ignavibacteriota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Tabrizicola sp. YIM 78059

ncbi_submitter: Biology Centre CAS


ncbi_country: China: Hong Kong

ncbi_isolation_source: rhizosphere soil of a mangrove plant

ncbi_organism_name: Albibacillus kandeliae

ncbi_submitter: Shenzhen University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: India

ncbi_organism_name: Lactobacillus paragasseri

ncbi_strain_identifiers: Indica

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_organism_name: Staphylococcus ureilyticus

ncbi_submitter: University of Oxford


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Eastbourne


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Philippines

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Philippine Genome Center


ncbi_country: Australia

ncbi_isolation_source: extraintestinal site

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology Sydney


ncbi_country: Italy

ncbi_organism_name: Thermoanaerobacter italicus Ab9

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecium P1139

ncbi_submitter: Washington University


ncbi_organism_name: Parolsenella catena

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Halomonas piscis

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Japan

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Microbiology Allied Health Sciences, Kitasato university


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pediatric Research and Clinical Center for Infectious Diseases


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_submitter: Yangzhou University


ncbi_country: Norway: Akershus

ncbi_isolation_source: abscess fluid

ncbi_organism_name: Bacteroides hominis

ncbi_submitter: Vestfold Hospital Trust


ncbi_organism_name: Pseudonocardia hierapolitana

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Blood


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: Swab from Pharynx

ncbi_submitter: Scientific Center for Anti-infectious Drugs (SCAID)


ncbi_submitter: Center for Microbial Communities


ncbi_country: Spain:Coast of Alicante; Western Mediterranean Sea; close to the coast of Guardamar del Segura

ncbi_isolation_source: seawater from mariculture cage of adult gilthead seabream (Sparus aurata)

ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: Slovakia: Samorin

ncbi_isolation_source: mill for raw meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: Australia: Sydney

ncbi_submitter: OUTBREAK


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Roseomonas sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas asiatica

ncbi_submitter: University of Oxford


ncbi_country: China: Zhejiang

ncbi_isolation_source: phlegm

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The First Affiliated Hospital of Zheng University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Centers for Disease Control, Taiwan


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus MISS6007

ncbi_submitter: Broad Institute


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Rhodoplanes sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Hyderabad


ncbi_organism_name: Peribacillus sp. NPDC096379

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Wolbachia endosymbiont of Nasonia giraulti

ncbi_submitter: Auburn University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Monash University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Tenericutes bacterium GWF2_35_184

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__unclassified Mycoplasmatota;s__Tenericutes bacterium GWF2_35_184


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_organism_name: Selenomonas montiformis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Candidatus Midichloria sp.

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: UR oenologie


ncbi_assembly_name: freshwater MAG --- LinL4_bin-0693

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: Rubeoparvulum massiliense

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Aerococcus urinae


ncbi_country: Portugal: Grandola; Herdade da Barroca da Serra

ncbi_isolation_source: forest soil

ncbi_organism_name: Burkholderia metallica

ncbi_submitter: Universidade do Minho


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: litter

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Institut Pasteur


ncbi_country: Spain: Palencia

ncbi_isolation_source: blood

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency (FOI)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xinjiang province

ncbi_organism_name: Sphingopyxis sp. LK2115

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Italy

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: SC


ncbi_organism_name: uncultured Limnohabitans sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brucella anthropi

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Galway


ncbi_country: India: Chandigarh

ncbi_isolation_source: landfill soil from a depth of 5.5 ft

ncbi_organism_name: Bacillus thermotolerans

ncbi_strain_identifiers: MTCC 8252

ncbi_submitter: Institute of Microbial Technology


ncbi_isolation_source: raw milk for cow(Bos taurus)

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Meiji Co., Ltd


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kueneniibacteriota;s__Candidatus Kuenenbacteria bacterium CG_4_9_14_3_um_filter_39_14


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M19BS1

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae


ncbi_submitter: Zhejiang university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 2309A

ncbi_submitter: University of Exeter


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Agrobacterium pusense

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. Y1

ncbi_submitter: College of resources and Environmental Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Candidatus Avimonas narfae

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Avimonas;s__Candidatus Avimonas narfae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avimonas;s__Candidatus Avimonas narfae


ncbi_organism_name: Tetragenococcus halophilus

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_organism_name: Salmonella sp. SAL4358


ncbi_organism_name: Rhodocyclales bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Denmark: Ejby Molle

ncbi_isolation_source: activated sludge from Ejby_18-Q3-R6-50

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: University of East Anglia


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: bioreactor

ncbi_organism_name: Vibrio sp. UBA2441

ncbi_submitter: University of Queensland


ncbi_country: Taiwan

ncbi_isolation_source: Crassostrea gigas

ncbi_organism_name: Shewanella algae

ncbi_submitter: National Chung Cheng University


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay

ncbi_isolation_source: Beach sand

ncbi_organism_name: Maribacter sp.

ncbi_submitter: Monash University


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Palma de Mallorca

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_country: Norway

ncbi_isolation_source: Ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_isolation_source: blood

ncbi_submitter: OHSU


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_organism_name: Mesorhizobium sp. LNHC221B00

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Weissella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada

ncbi_isolation_source: pork

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai Customs


ncbi_country: France: Marseille

ncbi_organism_name: Bowdeniella massiliensis

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: South Korea: Chungju

ncbi_isolation_source: hot spring

ncbi_organism_name: Microbacterium sp. EF45047

ncbi_submitter: Silla University


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Jiangxi; ChengMenShan

ncbi_isolation_source: sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: KP-Zhen

ncbi_submitter: the First Affiliated Hospital of Anhui Medical University


ncbi_country: USA: PA

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Maine

ncbi_isolation_source: foregut

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: Elanco Animal Health


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Icahn School of Medicine


ncbi_country: Japan: Nagasaki

ncbi_isolation_source: Coastal seawater

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWE2_36_40


ncbi_isolate: Pseudomonas sp. 8BK

ncbi_organism_name: Pseudomonas sp. 8BK

ncbi_strain_identifiers: Pseudomonas sp. 8BK

ncbi_submitter: Elham Karimi


ncbi_country: Ireland

ncbi_isolation_source: feces

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: University College Cork


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Porticoccus sp.

ncbi_submitter: University of Calgary


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: disinfectant-free drinking water; site 3

ncbi_organism_name: Polaromonas sp.

ncbi_submitter: University of Glasgow


ncbi_assembly_name: Rumen uncultured genome RUG10380

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Kurthia intestinigallinarum


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterobacter cloacae complex sp. FYR_6

ncbi_submitter: WenZhou Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. FYR_6


ncbi_organism_name: uncultured Syntrophaceae bacterium


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Mahatma Gandhi Medical College & Research Institute,


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolate: SPRUCE 27

ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_strain_identifiers: SPRUCE 27

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: Washington University in St. Louis


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Tang lab


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Brown University


ncbi_country: India: Lampokhari Lake; Aritar; Sikkim

ncbi_isolation_source: water

ncbi_organism_name: Paenarthrobacter sp. AR 02

ncbi_strain_identifiers: AR 02

ncbi_submitter: The University of Burdwan


ncbi_organism_name: Enterobacteriaceae bacterium


ncbi_submitter: University of Veterinary Medicine Budapest


ncbi_isolation_source: Mallard duck intestines

ncbi_organism_name: Lactococcus garvieae DCC43

ncbi_submitter: Norwegian University of Life Sciences


ncbi_organism_name: Herminiimonas arsenicoxydans

ncbi_submitter: Genoscope


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Laos

ncbi_isolation_source: chicken meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: Two-stage PNA wastewater reactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Washington


ncbi_country: Italy

ncbi_isolation_source: roe deer

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: swab isolate 1;3308MB

ncbi_submitter: University of California, Davis


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Candidatus Ventrenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Ventrenecus;x__unclassified Candidatus Ventrenecus;s__Candidatus Ventrenecus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: USA: South Carolina

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Instituto de Higiene


ncbi_country: China: Liaoning

ncbi_submitter: Zhejiang University


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Myanmar:Bago; Leikpaya Reservoir

ncbi_isolation_source: eutrophic water

ncbi_organism_name: Candidatus Phycosocius spiralis

ncbi_submitter: National Institute for Environmental Studies

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Caulobacterales;x__Caulobacterales incertae sedis;g__Candidatus Phycosocius;s__Candidatus Phycosocius spiralis


ncbi_country: China:Hubei; Xiaogan

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Coprococcus eutactus

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli KTE138

ncbi_submitter: Broad Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: New Zealand

ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: AUT University


ncbi_country: USA: Cambridge

ncbi_isolation_source: stool

ncbi_organism_name: Leuconostoc lactis


ncbi_country: Denmark: Bjergmarken

ncbi_isolation_source: activated sludge from Bjer_18-Q3-R1-45

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Liaocheng university


ncbi_isolation_source: Sputum

ncbi_organism_name: Escherichia coli

ncbi_submitter: marathon study consortium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: DOE JGI


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Bacteroides pyogenes

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Saprospiraceae bacterium


ncbi_organism_name: Citrobacter portucalensis

ncbi_strain_identifiers: Sil NS 39

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Australia

ncbi_isolation_source: sponge

ncbi_organism_name: Pseudoalteromonas fuliginea

ncbi_submitter: Technical University of Denmark


ncbi_assembly_name: LactobacillusPlantarum

ncbi_organism_name: Lactiplantibacillus plantarum 19L3

ncbi_submitter: Fundacion para el Fomento de la Investigacion Sanitaria y Biomedica de la Comunidad Valenciana (FISABIO-Salud Publica)


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: MA

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_submitter: Universidad de Costa Rica


ncbi_organism_name: Spiribacter roseus

ncbi_submitter: University of Sevilla, Spain


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: Feces (stool)

ncbi_organism_name: Brevibacterium yomogidense

ncbi_submitter: INRAE


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Pacific Ocean: Mariana Trench Challenger Deep

ncbi_isolation_source: seawater

ncbi_organism_name: Deinococcus sp. D7000

ncbi_submitter: Fudan University


ncbi_country: India: Phandakalan; Sehore road; Bhopal

ncbi_isolation_source: nodule

ncbi_organism_name: Bradyrhizobium sp. BRP14

ncbi_submitter: university of Oxford


ncbi_organism_name: uncultured Propionibacterium sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: Germany

ncbi_isolation_source: milk powder

ncbi_organism_name: Anoxybacillus flavithermus

ncbi_submitter: Technical University Munich


ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Yersinia pestis YN2588

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: Sulfuricurvum sp.


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Ruijin Hospital, Shanghai Jiaotong University School of Medicine, Shanghai, China


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_country: France: Savoie region; French Alps

ncbi_organism_name: Mycoplasma feriruminatoris

ncbi_submitter: INRAE Univ Bordeaux


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Hungary: Zempln Mountain

ncbi_isolation_source: rectum

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Hungarian University of Agriculture and Life Sciences


ncbi_country: Lithuania

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: USA: New Hampshire

ncbi_isolation_source: descending colon brush

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of New Hampshire


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Northumbria University


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Palacky University Olomouc


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomyces sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: White-crowned sparrow

ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8503

ncbi_submitter: Chinese University of Hong Kong


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_organism_name: Citrobacter sp. Cb028

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Slovenia

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Centre of Excellence for Biosensors, Instrumentation and Process control


ncbi_organism_name: Lactococcus lactis subsp. lactis IO-1

ncbi_submitter: Department of Bioscience, Tokyo University of Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis IO-1


ncbi_organism_name: Pseudomonas sp. W17

ncbi_submitter: China national rice research institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Australia

ncbi_isolation_source: fancy lettuce

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Darwinibacter acetoxidans

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Candidatus Darwinibacteriales;f__Candidatus Darwinibacteriaceae;g__Candidatus Darwinibacter;s__Candidatus Darwinibacter acetoxidans


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: University of Michigan

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: uncultured Halomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Wolbachia endosymbiont of Trichogramma kaykai

ncbi_strain_identifiers: wTkk

ncbi_submitter: University of Minnesota


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Roseibium album

ncbi_submitter: Jinan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: uncultured Corynebacterium sp.


ncbi_organism_name: Exiguobacterium indicum

ncbi_submitter: Gujarat Biotechnology Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_country: Pacific Ocean: Gulf of California; Guaymas Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Vibrio navarrensis

ncbi_submitter: Federal Insitute for Risk Assessment


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: Rumen uncultured genome RUG10639

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1xD42-87

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Zhejiang University


ncbi_country: Russia: Altai

ncbi_isolation_source: ayran

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0517

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Ekhidna sp.

ncbi_submitter: University of Southern California


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Alteromonas macleodii


ncbi_country: China: Baoding

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: CAU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: USA:Washington:Hanford 300 Area; IFRC

ncbi_isolation_source: ground water

ncbi_organism_name: Patescibacteria group bacterium UBA5006

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA5006


ncbi_country: USA: New York State

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Cornell University


ncbi_country: Norway

ncbi_isolation_source: Exudate from ulcer

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_organism_name: Cellulophaga baltica

ncbi_submitter: Skoltech


ncbi_country: Brazil

ncbi_isolation_source: artisanal cheese

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: School of Pharmaceutical Sciences


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC064A09

ncbi_submitter: The Genome Institute at Washington University


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D9_bin-0421

ncbi_organism_name: uncultured Dehalococcoidia bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: China: Shanghai

ncbi_organism_name: Shewanella putrefaciens

ncbi_submitter: Shanghai Engineering Research Center of Aquatic Product Processing and Preservation


ncbi_isolation_source: gut content

ncbi_organism_name: Acetatifactor aquisgranensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Oman

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sultan Qaboos University


ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Stenotrophomonas sp. JAI102

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: Sri Lanka

ncbi_isolation_source: vaginal swab post-delivery

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged beef steak (day 8 after packaging)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: WI

ncbi_organism_name: Escherichia coli DEC15B

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mucinivorans sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: Corynebacterium marquesiae

ncbi_submitter: Baylor College of Medicine


ncbi_country: Iraq: Camp Delta

ncbi_organism_name: Acinetobacter radioresistens WC-A-157

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: Box Swab

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Sewage

ncbi_organism_name: Acinetobacter guillouiae CIP 63.46

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Chile: Atacama Desert

ncbi_organism_name: Hymenobacter sp. AT01-02

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: Colorado State University


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: New Zealand: Otara

ncbi_organism_name: Pseudomonas syringae pv. berberidis

ncbi_strain_identifiers: ICMP 4116

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. berberidis

ncbi_type_material_designation: assembly from pathotype material


ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Candidatus Faecimonas gallistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Bacilli;o__;f__;g__Candidatus Faecimonas;s__Candidatus Faecimonas gallistercoris

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__Bacilli incertae sedis;g__Candidatus Faecimonas;s__Candidatus Faecimonas gallistercoris


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Granulicatella sp.


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: sewage

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Candidatus Ruminococcus hominiciens

ncbi_submitter: Ben Gurion University of the Negev


ncbi_organism_name: uncultured Azospirillum sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_country: New Zealand: Lake Okaro; Central Volcanic Plateau

ncbi_isolation_source: temperate lake

ncbi_organism_name: Nostoc sp. NZL

ncbi_strain_identifiers: NZL

ncbi_submitter: Universite Laval


ncbi_country: Nigeria

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Cepheid


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology