ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Dactylosporangium salmoneum

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


gtdb_representative: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: New Zealand: Hikurangi Margin

ncbi_isolation_source: Glendhu Ridge methane seep

ncbi_organism_name: Candidatus Aegiribacteria sp.

ncbi_submitter: GNS Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__FCB group incertae sedis;g__Candidatus Aegiribacteria;x__unclassified Candidatus Aegiribacteria;s__Candidatus Aegiribacteria sp.


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF TEXAS SOUTHWESTERN


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_assembly_level: Chromosome

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Steroidobacterales bacterium

ncbi_submitter: University of Galway


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shenzhen

ncbi_isolate: SZAS LIN-13

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS LIN-13

ncbi_submitter: The University Hong Kong


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG12478

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Chloroflexota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;x__environmental samples;s__uncultured Chloroflexota bacterium


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_organism_name: Lysobacter sp.

ncbi_submitter: EPFL


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: University of Florida College of Veterinary Medicine


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P42C

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P42C


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus sp. FSL M8-0025

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL M8-0025


ncbi_isolation_source: sheep gut metagenome

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Parma


ncbi_country: Malaysia

ncbi_isolation_source: Poultry

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Malaya


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Butyribacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Queensland


ncbi_organism_name: Morganella sp. (in: enterobacteria)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Morganella;x__unclassified Morganella (in: enterobacteria);s__Morganella sp. (in: enterobacteria)


ncbi_country: Peru: Lima

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: India: University of North Bengal

ncbi_isolation_source: fish gut

ncbi_organism_name: Shigella sp. GCP5

ncbi_submitter: NORTH BENGAL UNIVERSITY


ncbi_isolation_source: Faeces


ncbi_country: Thailand: Thung Chang

ncbi_isolation_source: termite gut

ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Padova


ncbi_isolation_source: pasta filata cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: INRA


ncbi_country: Chile

ncbi_isolation_source: blood

ncbi_organism_name: Bartonella henselae

ncbi_submitter: Ghent University


ncbi_country: Burkina Faso

ncbi_isolation_source: eggs

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Grass with Cow Manure

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: GB T3 LAM CEF 2

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_organism_name: Providencia stuartii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus australis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Meishan; Sichuan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: sea water

ncbi_organism_name: Kordiimonadaceae bacterium UBA4441

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Austria: Pichlinger See

ncbi_isolation_source: freshwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Joint Microbiome Facility

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. CFNIH11


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-4-11

ncbi_submitter: Curtin University


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S11

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Candidatus Atribacteria bacterium

ncbi_submitter: The Ohio State University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: South Korea: Seoul

ncbi_isolation_source: automobile air conditional evaporator

ncbi_organism_name: Deinococcus metallilatus

ncbi_submitter: Korea university


ncbi_assembly_name: Rumen uncultured genome RUG12987

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. houtenae;x__Salmonella enterica subsp. houtenae serovar 50:g,z51:-


ncbi_country: China: Shanghai

ncbi_isolation_source: Milk tofu

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Shanghai ocean university


ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: EPFL


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: National University of Singapore


ncbi_country: USA: Lake Washington

ncbi_organism_name: Simplicispira sp. 125


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Microcystis sp.

ncbi_submitter: University of Michigan


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: ENVO: 01000924(plumbing drain)

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Mahidol University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Eubacterium ramulus ATCC 29099

ncbi_submitter: Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;s__Eubacterium ramulus;x__Eubacterium ramulus ATCC 29099


ncbi_country: Brazil: Sao Paulo Zoo

ncbi_isolation_source: lake water from Sao Paulo s Zoo

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Instituto de Quimica


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coprococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: San Francisco

ncbi_isolation_source: feces on street

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_country: Italy

ncbi_isolation_source: food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Padova university


ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_strain_identifiers: ATCC 7055

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_submitter: Food and Drug and Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Cystic fibrosis patient

ncbi_organism_name: Pandoraea commovens

ncbi_submitter: LM-UGent


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Lautropia mirabilis


ncbi_assembly_name: JGI assembly

ncbi_organism_name: Candidatus Kryptonium thompsonii

ncbi_submitter: DOE - Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Kryptoniota;c__;o__;f__;g__Candidatus Kryptonium;s__Candidatus Kryptonium thompsonii

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Kryptoniota;g__Candidatus Kryptonium;s__Candidatus Kryptonium thompsonii


ncbi_country: Brazil

ncbi_isolation_source: cocoa bean fermentation

ncbi_organism_name: Periweissella fabalis

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_organism_name: Corynebacterium sp.


ncbi_country: China: Dajiu Lake

ncbi_isolation_source: sediments

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Butyribacter sp.


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: BGI


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Russia: Kazan

ncbi_organism_name: Acholeplasma laidlawii

ncbi_submitter: Kazan Institute of Biochemistry and Biophysics KazSC RAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Agricultural University of Athens


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_organism_name: Treponemataceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Australia: Boho South; VIC

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: The University of Auckland


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_country: China: Tibet

ncbi_isolation_source: lake

ncbi_organism_name: Evansella alkalicola

ncbi_submitter: Inner Mongolia University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: Palma de Mallorca

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Candidatus Bipolaricaulota bacterium

ncbi_submitter: East China University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Bipolaricaulota bacterium


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_submitter: Chongqing Medical University


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: PA

ncbi_isolation_source: dairy cow feces

ncbi_submitter: USDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: INRA


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Bacillaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: CAU


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NRRL WC-3723

ncbi_strain_identifiers: NRRL WC-3723

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Belgium

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyushu University


ncbi_country: Poland: Warszawa

ncbi_isolation_source: wound

ncbi_submitter: National Medicines Institute


ncbi_country: USA:New York; CentralHarlem

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Canada

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Viginia Tech University


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus IS-189


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Dechloromonas sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: EMG


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Sphaerochaeta sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Inserm


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Jeotgalicoccus sp. ATCC 8456

ncbi_strain_identifiers: ATCC 8456

ncbi_submitter: Graz University of Technology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Zurich


ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Uppsala University


gtdb_type_species_of_genus: t

ncbi_organism_name: Thermosinus carboxydivorans Nor1

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sichuanensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Stanford University


ncbi_country: Switzerland

ncbi_isolation_source: butter

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Greece

ncbi_isolation_source: clinical material

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W86059

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Ignavibacteria bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1447


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: cheese (Tome d Agen)

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_strain_identifiers: CIRM-BIA 689

ncbi_submitter: Brigham Young University


ncbi_organism_name: Streptomyces antibioticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: New Zealand: Christchurch

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CMB55_CON L1:2

ncbi_submitter: University of Canterbury


ncbi_country: USA: Utah

ncbi_isolation_source: blood stream

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: Antarctica: Collins

ncbi_isolation_source: Moss rhizosphere

ncbi_organism_name: Pseudomonas arsenicoxydans

ncbi_submitter: UFSC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Parasynechococcus sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: National Institute of Horticultural and Herbal Science , Rural Development Administration (RDA)


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: University of Surrey


ncbi_country: USA

ncbi_submitter: USDA


ncbi_organism_name: Mesorhizobium sp. M1027

ncbi_submitter: Washington State University


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii 44467_1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_submitter: University of Milan


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_country: Spain: Amadorio reservoir; Alicante

ncbi_isolation_source: freshwater reservoir from 10 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Prevotellamassilia sp.


ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Fujian Medical University Union Hospital


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: cerebrospinal fluid (CSF)

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: USA: PA

ncbi_isolation_source: spleen mouse

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_assembly_name: freshwater MAG --- T7-5_bin-083

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Pseudomonas sp. DSV-1

ncbi_submitter: Texas State University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: Germany

ncbi_organism_name: Leptospira interrogans str. Brem 329

ncbi_strain_identifiers: Brem 329

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans str. Brem 329


ncbi_country: Costa Rica

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_country: Russia

ncbi_isolation_source: Rhipicephalus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: China: Shanghai

ncbi_submitter: China Agricultural University


ncbi_country: Portugal

ncbi_organism_name: Tepidiphilus margaritifer DSM 15129

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Kirin


ncbi_isolation_source: dinoflagellate phycosphere

ncbi_organism_name: Flagellimonas amphidinii

ncbi_submitter: Shantou University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Universidad de Zaragoza, Facultad de Veterinaria


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; La Guasima

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Sandiego


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Cryptobacteroides pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides pullicola


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Environmental Microbiology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Croceibacter atlanticus

ncbi_submitter: University of Queensland


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Helcococcus ovis

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Medicine Siriraj Hospital, Mahidol University


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Dongia sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Alistipes sp. i18-0019-D1

ncbi_submitter: Laboratory for Microbiome Sciences  Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Pseudomonas sp. A1437

ncbi_submitter: UMR 1300 BIOEPAR


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Methylococcales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: USA:Los Angeles

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Isoptericola sp. NPDC056605

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Alteriqipengyuania sp.

ncbi_submitter: Tang lab


ncbi_country: USA: Los Angeles

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Duncaniella muris


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Florida


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Cellulomonas soli

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Nepal

ncbi_isolation_source: lichen

ncbi_organism_name: Bacillus sp. NP157

ncbi_submitter: Korea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. NP157


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_assembly_name: Richelia intracellularis AM_2804

ncbi_organism_name: Richelia intracellularis HH01

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: Australia: Walkamin; Queensland

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: Portland State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: China:Hubei; Anlu

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Bacteroides fragilis


ncbi_country: Pacific Ocean: Lau Basin

ncbi_organism_name: Thiotrichales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Caldisericota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Columbia University Medical Center


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_assembly_name: H

ncbi_isolate: H

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: H

ncbi_submitter: DTU


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Baoding

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: CAU


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Clostridium sp. UBA3875

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Bifidobacterium dentium


ncbi_country: South Korea

ncbi_isolation_source: Anaerobic digesters

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium GWC2_66_88


ncbi_organism_name: Acidithiobacillus ferrooxidans ATCC 53993

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: USA: Oahu Island

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: OIDO

ncbi_submitter: University of California Merced

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: Switzerland: Basel

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8284

ncbi_submitter: Chinese University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG13211

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: cerbrospinal fluid

ncbi_organism_name: Neisseria meningitidis NMB

ncbi_strain_identifiers: NMB

ncbi_submitter: University of Western Australia


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_country: Brazil: Para; Altamira

ncbi_isolation_source: Bat guano from cave soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_country: China

ncbi_isolation_source: Freshwater fish

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD03860

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas gulae

ncbi_submitter: UC Davis


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: Robert Koch Institute


ncbi_country: Kenya: Lwak

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus infantis

ncbi_submitter: Univ. of Maryland


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Neisseria sp.


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Desulfonatronum sp. SC1

ncbi_submitter: University of Huddersfield


ncbi_country: China: Sichuan; Chengdu

ncbi_isolation_source: Central nervous system

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. hoffmannii


ncbi_organism_name: Aliarcobacter lanthieri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Manipur; Imphal; Loktak Lake

ncbi_isolation_source: sediment

ncbi_organism_name: Brevibacterium sp. LS14

ncbi_submitter: School of Biotechnology, Kalinga Institute of Industrial Technology-KIIT (Deemed University)


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Tooth

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: SC


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Nanjing university


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus durans


ncbi_organism_name: Streptomyces globosus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Monash University


ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Jiangnan University


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Saccharicrinis sp. FJH54

ncbi_submitter: Shandong University


ncbi_organism_name: Streptomyces sp. NPDC057592

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_organism_name: Streptomyces sp. NBC_00169

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Peptidiphaga sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Bacteroides fragilis 638R

ncbi_submitter: The Wellcome Trust Sanger Institute


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Prevotella pallens

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Nacional de Rehabilitacion Luis Guillermo Ibarra Ibarra


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Germany: Berlin

ncbi_isolation_source: gastric corpus

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Max von Pettenkofer-Institut


ncbi_country: USA: FL; Ft. Lauderdale

ncbi_isolation_source: surface mucus layer and tissue

ncbi_organism_name: Leisingera sp. McT4-56

ncbi_submitter: Meyer Microbes Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Abe hydrothermal plume 200m

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: [Lactobacillus] rogosae

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Canada: Saskatoon

ncbi_isolation_source: wheat seed

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Delaware

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium elkanii

ncbi_submitter: VEIL Bradyrhizobium group


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_isolation_source: jejunum

ncbi_organism_name: Slackia equolifaciens

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WTSI


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: SponGES


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: Japan

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_country: Germany

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: India: Karnataka

ncbi_isolation_source: blood from cattle with hemorrhagic septicemia disease

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Minnesota


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis


ncbi_country: Chile: Chanaral de Aceituno Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Streptomyces sp. CHA1

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_isolation_source: calf

ncbi_organism_name: Escherichia coli DEC4D

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Pedococcus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hoeflea sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Broad Institute


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWE2_47_10


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine environment

ncbi_organism_name: Synechococcus sp. ROS8604

ncbi_submitter: Station Biologique de Roscoff (CNRS - Sorbonne University)


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3226

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom

ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_isolation_source: Proximal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Caldifermentibacillus hisashii

ncbi_submitter: Penn State


ncbi_organism_name: Enterobacter mori

ncbi_submitter: INRAE


ncbi_country: China: Zhejiang

ncbi_isolation_source: Chicken Droppings

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Clinical; sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Sphingobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_assembly_name: TC3-10 Medusa

ncbi_organism_name: Methylobacterium oryzae

ncbi_submitter: Instituto de Quimica


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA

ncbi_isolation_source: gut (caecum)

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: North Carolina State University


ncbi_country: USA: Evanston; Illinois

ncbi_isolation_source: sink faucet

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: The Institute of Microbiology of the National Academy of Sciences of Belarus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Malaysia: Penang; Air Itam

ncbi_isolation_source: milk

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Streptomyces sp. AgN23

ncbi_submitter: UMR 5546 CNRS UPS


ncbi_country: Chile

ncbi_isolation_source: egg poultry

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Streptomyces coelicoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: silkworm

ncbi_submitter: Los Alamos National Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar morrisoni


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0648

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: Russia

ncbi_isolation_source: food

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: China: Shanghai

ncbi_isolation_source: Cooked chicken

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Yamaguchi University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfohalobiaceae bacterium S24

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Streptomyces albogriseolus


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Lachnospiraceae bacterium HCP1S3_C3

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Lentilactobacillus otakiensis

ncbi_submitter: Novonesis A/S


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_organism_name: Bernardetiaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Japan Institute for Health Security


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rubinisphaera brasiliensis

ncbi_submitter: Jinan University


ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Hp-FK

ncbi_submitter: Koceli University, Faculty of Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: freshwater MAG --- YR_bin-3491

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: Italy: Trento; Comano Thermal Spring

ncbi_isolation_source: alpine spring water

ncbi_submitter: University of Trento


ncbi_organism_name: Bacillota bacterium


ncbi_country: Peru: San Juan Miraflores shantytown; Lima

ncbi_isolation_source: patient with gastritis

ncbi_organism_name: Helicobacter pylori SJM180

ncbi_submitter: Dept. of Molec. Microbiology, Washington University Medical School, Saint Louis


ncbi_country: Brazil: Uberaba

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Companilactobacillus paralimentarius

ncbi_submitter: University of Alberta


ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: CIRAD


ncbi_country: China: Pearl River

ncbi_isolation_source: river

ncbi_organism_name: Deinococcus aestuarii

ncbi_strain_identifiers: SYSU M49105

ncbi_submitter: sun-yat sen university


ncbi_country: Taiwan

ncbi_isolation_source: Orange

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: TCI Co.,LTD


ncbi_country: Italy: Sarentino (BZ)

ncbi_isolation_source: feed

ncbi_organism_name: Clostridium botulinum C

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: USA: New York; University of Rochester

ncbi_isolation_source: laboratory

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rochester School of Medicine & Dentistry


ncbi_country: Slovakia: Samorin

ncbi_isolation_source: final product

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Louisiana State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidithiobacillus ferriphilus

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: rumen pill

ncbi_organism_name: Ruminococcus flavefaciens FD-1

ncbi_submitter: The North American Consortium for Genomics of Fibrolytic Ruminal Bacteria


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yonsei University


ncbi_country: USA

ncbi_isolation_source: probiotic prodcut

ncbi_organism_name: Bifidobacterium longum subsp. infantis

ncbi_submitter: Evolve Biosystems Inc.


ncbi_country: China: Shenzhen

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: BGI


ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc032

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc032


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_country: China: Fujian

ncbi_isolation_source: feces

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Lebanese American University


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG464

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_assembly_name: Rumen uncultured genome RUG10190

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: caecum

ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Veterinary Research Institute


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_country: Sweden: Bothnian Sea

ncbi_isolation_source: Bothnian Sea site NB8 sediments 37-42 cm depth; used to inoculate methane- and iron-fed bioreactor (T0); bioreactor biomass 16 months after reactor inoculation (T1); and 29 months after reactor inoculation (T2)

ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Radboud University Nijmegen


ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Prevotella sp.

ncbi_submitter: SAHMRI


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FRCC PCM


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: Brazil: Braganca

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus apis

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: the seqafrica consortium


ncbi_organism_name: Thermosynechococcus sp. PP555

ncbi_submitter: Academia Sinica


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Pantoea vagans

ncbi_submitter: Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences


ncbi_isolation_source: bioswale

ncbi_organism_name: Bdellovibrio sp. NC01

ncbi_submitter: Providence College


ncbi_organism_name: Staphylococcus sp. HMSC055C03

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Germany

ncbi_organism_name: Gallibacterium genomosp. 1

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces sp. NPDC005244

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Guangxi Medical University


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: alpha proteobacterium IMCC14465

ncbi_submitter: Inha university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;x__PS1 clade;s__alpha proteobacterium IMCC14465


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Subdoligranulum variabile

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Algibacter aquimarinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Parabacteroides distasonis


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Limosilactobacillus antri DSM 16041

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Selenomonas bovis 8-14-1

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_isolation_source: suspected reference strain

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. quasipneumoniae


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Methylocucumis sp.


ncbi_country: Chile: Atacama Desert; between Atacama Salar and Lejia lagoon

ncbi_isolation_source: bare soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Instituto de Nutricion y Tecnologia de los Alimentos - Universidad de Chile


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. SKLX114409

ncbi_submitter: Zhejiang university


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Streptomyces virginiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus pacificus


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Butyrivibrio sp. FCS014

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA: Minnesota

ncbi_isolation_source: brain abscess

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Blautia wexlerae


ncbi_country: Spain: Barcelona

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Texas at San Antonio


ncbi_isolation_source: phlegm

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Lund University


ncbi_country: Slovakia: Ruzomberok

ncbi_isolation_source: urinary catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculty of Natural Sciences, Comenius University in Bratislava


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Wageningen University and Research


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: United Kingdom

ncbi_isolation_source: Freshwater sample from downstream of wastewater treatment plant

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The REHAB Consortium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_strain_identifiers: STEC Lv96-3

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: bay water

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_country: Poland: Katowice

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_country: USA: ND

ncbi_isolation_source: feces mink mustelidae


ncbi_submitter: The United Graduate School of Drug Discovery and Medical Information Sciences, Gifu University


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_submitter: SC


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Atlantic Ocean

ncbi_isolation_source: skin

ncbi_organism_name: Micrococcus sp. APC 4021

ncbi_submitter: University College Cork


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_submitter: University of Tartu


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Kenya

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Masinde Muliro University of Science and Technology


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C295_10

ncbi_submitter: IGS


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Sulfuricellaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: BGI


ncbi_organism_name: Xanthomonas arboricola


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Egypt

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Micromonospora sp. NPDC047187

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan

ncbi_organism_name: Pseudomonas meliae

ncbi_strain_identifiers: ICMP 6289

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas meliae


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. EST19A

ncbi_submitter: Wayne State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Thiotrichales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Bilophila sp.


ncbi_country: Brazil: Belo Horizonte;Pampulha lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M53BS1

ncbi_submitter: Universite de Montreal


ncbi_country: USA: New York

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_country: United Kingdom: England

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Caecum

ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Mitsuokella multacida

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium bangladeshense

ncbi_submitter: University of Minnesota


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Bacillaceae bacterium UBA1651

ncbi_submitter: University of Queensland


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: MORINAGA MILK INDUSTRY CO.,LTD.


ncbi_organism_name: Sulfitobacter sp. 1A09132

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Phocaeicola plebeius


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Campylobacter gracilis

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_country: USA

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Washington University School of Medicine


ncbi_submitter: Instituto Nacional de Salud


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Coraliomargarita sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Gulf of Mexico

ncbi_isolation_source: sample BD02T18 sea water enriched with oil for 18 days

ncbi_organism_name: Gammaproteobacteria bacterium 42_54_T18

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_organism_name: Achromobacter insuavis

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Dairy environment

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Universite Laval


ncbi_country: China: Hangzhou

ncbi_isolation_source: yogurt

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Acidimicrobiales bacterium


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_assembly_name: IMG-taxon 2595698228 annotated assembly

ncbi_organism_name: Succinivibrio dextrinosolvens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_submitter: Christian Medical College


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: feces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Anaerohalosphaeraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacillus cereus group sp. MYBK79-1

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. MYBK79-1


ncbi_country: Nigeria

ncbi_isolation_source: stool

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Cepheid


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Stanford University


ncbi_country: USA: WA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Washington


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: surface water

ncbi_submitter: University of Basel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: blood

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Lysinibacillus xylanilyticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Paenibacillus sp. 843

ncbi_submitter: Institute of Laboratory Animal Sciences, Chinese Academy of Medical Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Rothia terrae


ncbi_organism_name: Candidatus Scatomorpha sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;x__unclassified Candidatus Scatomorpha;s__Candidatus Scatomorpha sp.


ncbi_organism_name: uncultured Oligoflexales bacterium


ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute for Public Health and the Environment


ncbi_organism_name: uncultured Mycoplasmatales bacterium


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S5

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China: Gobi Desert

ncbi_isolate: GDC bin3

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: GDC bin3

ncbi_submitter: Monash University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Abuja


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_submitter: UMR 1137 IAME


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWA1_44_23


ncbi_assembly_name: freshwater MAG --- Loc080925-6m_bin-1143

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_submitter: The Lu'an People's Hospital


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Proteus terrae

ncbi_submitter: McGill University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: INRA


ncbi_country: USA: MN

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; time zero i.e. control

ncbi_organism_name: Candidatus Hopanoidivorans cymbastelae

ncbi_submitter: Australian Institute of Marine Science


ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Staphylococcus aureus T59813

ncbi_submitter: Broad Institute


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-1152

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Thiomargarita sp.

ncbi_submitter: University Duisburg-Essen


ncbi_country: France

ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10668

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Flavobacteriales bacterium UBA4428

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water sample from Hawaii Ocean Time-series (HOT) cruises

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: SCOPE


ncbi_organism_name: Stenotrophomonas sp. CCNWLW4

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Tobacco Research Institute, Chinese Academy of Agricultural Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: NE

ncbi_isolation_source: porcine pig kidney

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Ensifer sp. IC4062

ncbi_submitter: university of Oxford


ncbi_country: China: Qinghai

ncbi_isolation_source: intestinal content of marmot

ncbi_organism_name: Arthrobacter sp. zg-Y40

ncbi_submitter: Chinese Center For Disease Control And Prevention


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Seoul National University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1159

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Nanoperiomorbaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanoperiomorbia;o__Candidatus Nanoperiomorbales;f__Candidatus Nanoperiomorbaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanoperiomorbia;o__Candidatus Nanoperiomorbales;f__Candidatus Nanoperiomorbaceae;x__unclassified Candidatus Nanoperiomorbaceae;s__Candidatus Nanoperiomorbaceae bacterium


ncbi_organism_name: Serratia fonticola

ncbi_submitter: Wellcome Sanger Institute