ncbi_organism_name: Opitutia bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


gtdb_representative: t

ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_assembly_level: Scaffold

ncbi_organism_name: Microcella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Aeromonas allosaccharophila

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Eubacterium ramulus

ncbi_submitter: BGI-Shenzhen


ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Northern Ireland

ncbi_isolation_source: meat environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Northumbria University


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. ZJJH19_0027

ncbi_submitter: Zhejiang university


ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Joint Microbiome Facility


ncbi_assembly_level: Chromosome

ncbi_organism_name: Escherichia coli

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_assembly_name: freshwater MAG --- Umea2p2_bin-0364

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Synechococcales cyanobacterium

ncbi_submitter: EPFL


ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_country: USA: IA

ncbi_isolation_source: excrement

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: India: Dharwad; Karnataka

ncbi_isolation_source: Milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Madurai Kamaraj University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: Roseburia faecis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Gilliamella apicola


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: brown University/Rhode Island Hospital


ncbi_assembly_level: Complete Genome

ncbi_country: Antarctica

ncbi_isolation_source: antarctic penguin faecal samples

ncbi_organism_name: Planococcus faecalis

ncbi_refseq_category: reference genome

ncbi_submitter: Ajou University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: University College Cork


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Bacillus sp. DJP31

ncbi_submitter: University of Tennessee - Knoxville

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. DJP31


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Netherlands Donor Feces Bank


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Nocardia fluminea


ncbi_organism_name: Candidatus Eremiobacteria bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;x__unclassified Candidatus Eremiobacteria;s__Candidatus Eremiobacteria bacterium


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Aeromonas caviae


ncbi_country: United Kingdom: Gloucester

ncbi_isolation_source: Kidney abscess

ncbi_organism_name: Chryseobacterium nakagawai


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium sp. ACRPR

ncbi_strain_identifiers: ACRPR

ncbi_submitter: NHGRI/NIH


ncbi_country: Germany

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Italy: Emilia Romagna

ncbi_isolation_source: caecal content

ncbi_organism_name: Helicobacter winghamensis

ncbi_submitter: University of Bologna


ncbi_organism_name: Aminobacter aminovorans

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriales bacterium UBA2958

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Deep-sea water

ncbi_organism_name: Microbacterium maritypicum

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: feces

ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: India: Kerala

ncbi_isolation_source: throat swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Christian Medical College


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Oregon

ncbi_isolation_source: plant

ncbi_organism_name: Agrobacterium rubi

ncbi_submitter: Oregon State University


ncbi_country: Netherlands

ncbi_isolation_source: beet pulp; sugar refinery

ncbi_organism_name: Clostridium thermosuccinogenes

ncbi_submitter: Corbion


ncbi_organism_name: Streptococcus pyogenes ABC020052543

ncbi_submitter: Broad Institute


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: Canada: Winnipeg

ncbi_isolation_source: Wastewater

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: University of Manitoba,


ncbi_organism_name: Prevotella sp. HUN102


ncbi_organism_name: Agromyces mediolanus

ncbi_submitter: Guangdong University of Petrochemical Technology


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Slackia sp.


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Texas

ncbi_isolation_source: sinus swab

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: Texas A&M University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Iran: Persian Gulf; Khark

ncbi_isolation_source: marine surface water

ncbi_organism_name: Marinobacterium sp.

ncbi_submitter: University of Tehran


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptomyces werraensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Nanjing University


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter negativus

ncbi_submitter: Seoul Women's University


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Priestia megaterium

ncbi_submitter: INRAE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Pacific Ocean

ncbi_isolation_source: Hadal surficial sediment

ncbi_organism_name: Nitrospina sp.

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: Canada: Toronto

ncbi_isolation_source: Garlic Smoked Sausage

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Hellea sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: asymptomatic patient

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Prevotella merdae


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Portugal

ncbi_isolation_source: Hospital wastewater

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: UCIBIO, Faculty of Pharmacy, University of Porto


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: University of Calgary


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 4-203-08_S1_C3

ncbi_submitter: IGS


ncbi_assembly_name: Rumen uncultured genome RUG091

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: University of Maryland Eastern Shore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_isolation_source: Miscellaneous vagina

ncbi_organism_name: Streptococcus sp. FDAARGOS_522

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: California

ncbi_organism_name: Streptomyces sp. SAI-149

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Saccharothrix longispora

ncbi_submitter: Laboratoire de biologie des systemes microbiens LBSM


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Neisseria flavescens

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Phytoplasma prunorum

ncbi_submitter: USDA APHIS PPQ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrX (Apple proliferation group);s__Candidatus Phytoplasma prunorum


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteriovoracaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: France: Auvergne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Georgia: Tbilisi

ncbi_isolation_source: feces

ncbi_submitter: Eliava IBMV

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Reading


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Granulicella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: rumen content from lactating cow

ncbi_organism_name: bacterium

ncbi_submitter: zhejiang university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: ASCENSION


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Inserm


ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Galway


ncbi_organism_name: Streptomyces qinglanensis

ncbi_submitter: BGI Research


ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: uncultured Myxococcota bacterium

ncbi_submitter: Korea Polar Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__environmental samples;s__uncultured Myxococcota bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: Desulforhabdus sp.

ncbi_submitter: University of Waterloo


ncbi_country: South Africa: Western Cape Province

ncbi_isolation_source: soil

ncbi_organism_name: Actinomadura rudentiformis

ncbi_submitter: School of life science


ncbi_country: China: Hubei

ncbi_isolation_source: catheter

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Dhaka


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: McGill University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Spartobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: jeotgal (Korean fermented food)

ncbi_organism_name: Bacillus sp. SJ-10

ncbi_submitter: Pukyong National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SJ-10


ncbi_organism_name: Stenotrophomonas maltophilia ATCC 19867

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Stenotrophomonas;x__Stenotrophomonas maltophilia group;s__Stenotrophomonas hibiscicola;x__Stenotrophomonas maltophilia ATCC 19867


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Leicester


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Chosun University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EBI


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus HOAG6047

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: Brazil

ncbi_isolation_source: fish

ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_country: Spain: Ribadeo; Galicia

ncbi_isolation_source: larvae in seawater tank

ncbi_organism_name: Vibrio europaeus

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas sp. B6001

ncbi_submitter: Wageningen University & Research


ncbi_country: Japan

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: tissies l great toe

ncbi_organism_name: Porphyromonas sp. HMSC077F02

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Orenburg

ncbi_isolation_source: intestines

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: ICIS 18

ncbi_submitter: Institute of cellular and intracellular symbiosis UrD RAS


ncbi_organism_name: Sulfitobacter faviae

ncbi_submitter: Gloucester Marine Genomics Institute


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: World Institute of Kimchi


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: skin biopsy

ncbi_submitter: National Jewish Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacteroides;s__Mycobacteroides abscessus;sb__Mycobacteroides abscessus subsp. bolletii;x__Mycobacteroides abscessus subsp. bolletii CRM-0020


ncbi_country: China: Tibet

ncbi_isolation_source: alpine steppe soil from semi-arid plateau temperate monsoon climate

ncbi_organism_name: Sphingomonas sp. R647

ncbi_submitter: Chinese Academy of Agricultural Sciences (CAAS)


ncbi_country: Laos

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Robiginitomaculum sp.

ncbi_submitter: Lund University


ncbi_country: Slovakia

ncbi_isolation_source: bryndza cheese

ncbi_organism_name: Leuconostoc mesenteroides subsp. mesenteroides

ncbi_submitter: Faculty of Natural Sciences of the Comenius University in Bratislava


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Stony Brook University


ncbi_country: State of Palestine: Jerusalem

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tsinghua University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Providencia vermicola

ncbi_submitter: the seqafrica consortium


ncbi_country: Nigeria

ncbi_isolation_source: food

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


gtdb_type_species_of_genus: t

ncbi_country: Netherlands: Waddenzee

ncbi_organism_name: Thiomicrospira pelophila DSM 1534

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: University of Zurich


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardiopsis listeri NBRC 13360

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Thermomicrobiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Ulvibacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ottowia sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_country: South Korea: Seongju

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis serovar aizawai

ncbi_submitter: Kyungpook National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar aizawai


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Brazil: Rio de janeiro

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Carlos Chagas Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_submitter: Shandong Academy of Agricultural Science


ncbi_country: USA: Pennsylvania; Pittsburgh

ncbi_isolation_source: sputum

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Wisconsin - Madison


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus sp. DIV1742a

ncbi_submitter: Broad Institute


ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: College of Science for Women


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_country: Thailand: Yasothon

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: EMG


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Bethesda

ncbi_isolation_source: host

ncbi_organism_name: Granulibacter bethesdensis

ncbi_submitter: Igenbio, Inc


ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: Portugal:Cabeco de Vide

ncbi_isolation_source: Cabeco de Vide travertine

ncbi_organism_name: Firmicutes bacterium UBA911

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA911


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Alistipes shahii


ncbi_organism_name: Kiloniellaceae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: USDA-ARS 2087

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Nanchang university


ncbi_organism_name: Nanhaiella sioensis

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_submitter: Fujian Inspection and Research Institute for Product Quality, China


ncbi_assembly_name: freshwater MAG --- Ja1-D4_bin-205

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Myxococcales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Anaerolineae bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada

ncbi_submitter: Canadian Food Inspection Agency


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Denmark

ncbi_isolation_source: Hospital Infection (undetermined)

ncbi_organism_name: Enterococcus faecalis EnGen0065

ncbi_submitter: Broad Institute


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: USA: IN

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Streptococcus sanguinis


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Chile

ncbi_isolation_source: Arid soil sample

ncbi_organism_name: Streptomyces huasconensis

ncbi_submitter: Antofagasta Institute


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Stanley


ncbi_organism_name: Escherichia coli

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pseudomonas brassicacearum

ncbi_submitter: INRAE


ncbi_country: Germany

ncbi_isolation_source: water

ncbi_organism_name: Buttiauxella ferragutiae

ncbi_submitter: TZW: DVGW-Technologiezentrum Wasser


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: shallow marine sediment

ncbi_organism_name: uncultured Photobacterium sp.

ncbi_submitter: marine college, shandong university


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Psychrobacter sp.


ncbi_isolation_source: Plant material

ncbi_organism_name: Pseudomonas amygdali pv. eriobotryae

ncbi_strain_identifiers: CFBP 2343

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. eriobotryae


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: VA

ncbi_isolation_source: ATCC Isolate

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteriovoracaceae bacterium UBA6200

ncbi_submitter: University of Queensland


ncbi_country: USA: Missouri

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_country: Australia: Adelaide

ncbi_isolation_source: sinus

ncbi_submitter: Adelaide Medical School


ncbi_organism_name: Glaciecola sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: sea water

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Thermodesulfobacteriota;c__Candidatus Dadabacteria;x__unclassified Candidatus Dadabacteria;s__Candidatus Dadabacteria bacterium UBA1144


ncbi_country: Bangladesh

ncbi_isolation_source: disease case

ncbi_organism_name: Neisseria meningitidis NM3642

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin - Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG161

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: Max Planck Institute for Evolutionary Biology


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M24390

ncbi_submitter: Broad Institute


ncbi_country: Turkey: Kars

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Sun-yat Sen University


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_submitter: instituto de investigaciones biologicas clemente estable


ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Abiotrophia defectiva


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: NY; Wolcott

ncbi_organism_name: Mycoplasmopsis arginini QMP CG1-2758

ncbi_submitter: National Research Council (CNR)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Acetobacter malorum

ncbi_submitter: Teagasc


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B295;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Mycobacterium paraseoulense

ncbi_submitter: Department of Infection Metagenomics, Osaka University


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: Propionibacterium sp. KPL1838

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Radboud University


ncbi_country: Nigeria

ncbi_isolation_source: Wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_submitter: Korea Polar Research Institute


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Final Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lewinella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: bodily fluid

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Limnobacter sp. UBA3510

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacteroides chelonae

ncbi_submitter: University of Texas at Tyler Health Science Center


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Burkholderia sp. BCCCDS10

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Marispirochaeta aestuarii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Methylophaga aminisulfidivorans MP

ncbi_strain_identifiers: MP

ncbi_submitter: Chosun University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Spain: Asturias

ncbi_organism_name: Leuconostoc sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Clostridiales bacterium VE202-15

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Fayetteville; Arkansas

ncbi_isolation_source: sludge from a nitrification basin of a wastewater treatment plant grown in increasingly acidic conditions in an aerobic bioreactor

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: USDA


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Urethral

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium algoritolerans

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Paradevosia shaoguanensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Polynucleobacter paneuropaeus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho university


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alkalispirochaetaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Wujia chipingensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: India: Himalayan mountain ranges

ncbi_isolation_source: Melt water

ncbi_organism_name: Exiguobacterium indicum HHS 31

ncbi_strain_identifiers: HHS 31

ncbi_submitter: Centre for Cellular and Molecular Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum;x__Exiguobacterium indicum HHS 31


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Proteiniphilum sp.

ncbi_submitter: University of Waterloo


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Mesorhizobium sp. M0854

ncbi_submitter: Washington State University


ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Bern


ncbi_organism_name: Acholeplasmatales bacterium


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Harrisonbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Harrisoniibacteriota;x__unclassified Candidatus Harrisonbacteria;s__Candidatus Harrisonbacteria bacterium


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: fecal swab

ncbi_submitter: City University of Hong Kong


ncbi_country: China:Sun Yat-sen University;Guangzhou

ncbi_isolation_source: acid mine drainage

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;o__Candidatus Acidulodesulfobacterales;g__Candidatus Acidulodesulfobacterium;s__Candidatus Acidulodesulfobacterium ferriphilum


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 1.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium RIFOXYA12_FULL_35_25


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: unknown


ncbi_organism_name: Enterococcus faecium SD2A-2

ncbi_submitter: The Genome Institute


ncbi_country: South Korea: the East Sea

ncbi_isolation_source: Seawater

ncbi_organism_name: Rheinheimera aquimaris

ncbi_submitter: Chung-Ang university


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_assembly_name: Rumen uncultured genome RUG10225

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Queensland


ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 227

ncbi_organism_name: Staphylococcus agnetis

ncbi_strain_identifiers: SNUC 3261

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus sp. FSL R9-9481

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL R9-9481


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1932

ncbi_submitter: Broad Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: Atlantic Ocean: Northern Atlantic Ocean

ncbi_isolation_source: ocean water

ncbi_submitter: Uppsala University


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Yakult Central Institute


ncbi_submitter: Shanghai General Hospital


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-0125

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Aggregatibacter sp.


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Australia: Sydney

ncbi_isolation_source: Oral cavity

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Spirochaetaceae bacterium UBA6243


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus simulans

ncbi_submitter: University of Bern


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: bioreactor inoculated with peat from an acidic fen and consecutively exposed to oxic and anoxic cycles

ncbi_organism_name: Formivibrio sp.

ncbi_submitter: Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures


ncbi_organism_name: Comamonas sp. lk

ncbi_submitter: Biology Centre CAS


ncbi_country: USA: Temple; Texas

ncbi_isolation_source: blood

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Central Texas Veterans Health Care System


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_country: USA: NY; Buffalo

ncbi_organism_name: Haemophilus haemolyticus

ncbi_submitter: University of Iowa


ncbi_country: Italy

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Entasis Therapeutics


ncbi_organism_name: Listeria monocytogenes Lm21045

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pirellula sp.

ncbi_submitter: The University of Texas at Austin


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pelomicrobium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Neorhizobium sp. JUb45


ncbi_country: Spain: Galicia

ncbi_isolation_source: Colon adenocarcinoma

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Biomedical research institute (INIBIC)


ncbi_organism_name: Enterococcus avium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium striatum

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Qingdao

ncbi_isolation_source: seawater

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: Ocean University of China


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Oliverpabstia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Babelota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;x__unclassified Candidatus Babelota;s__Candidatus Babelota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Johannesburg


ncbi_assembly_name: IMG-taxon 2667527223 annotated assembly

ncbi_organism_name: Geopseudomonas guangdongensis

ncbi_strain_identifiers: CCTCC AB 2012022

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Walter Reed Army Medical Center; Washington; DC

ncbi_organism_name: Acinetobacter baumannii OIFC099

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: China

ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Archangiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: soil

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Methylacidiphilae;o__Methylacidiphilales;f__Methylacidiphilaceae;x__unclassified Candidatus Methylacidiphilaceae;s__Candidatus Methylacidiphilaceae bacterium UBA1321


ncbi_organism_name: Thalassospira alkalitolerans


ncbi_submitter: University of California at Davis


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: sewage

ncbi_organism_name: Bradyrhizobium sp. UASWS1016

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_country: USA: Maywood

ncbi_isolation_source: feces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Thailand: Narathiwat

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: B-DidR

ncbi_submitter: Johns Hopkins University


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: United Kingdom: Great Yarmouth

ncbi_isolation_source: surface coastal seawater

ncbi_organism_name: Neptuniibacter sp.

ncbi_submitter: Ocean university of China


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Roseburg

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Niastella populi

ncbi_strain_identifiers: CCTCC AB 208238

ncbi_submitter: Huzhong Agricultural University


ncbi_country: China: Guangdong

ncbi_isolation_source: environment

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Desulfarculales bacterium

ncbi_submitter: Genoscope CEA


ncbi_country: Canada: Toronto

ncbi_isolation_source: vaginal microbiome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Saskatchewan


ncbi_country: Brazil: Londrina

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_isolation_source: isolated from diarrheal patient

ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Miyazaki


ncbi_isolation_source: peat soil sample

ncbi_organism_name: Prescottella defluvii

ncbi_submitter: AIMST University


ncbi_country: Switzerland

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: India

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Christian Medical College, Vellore


ncbi_organism_name: Immundisolibacter sp.

ncbi_submitter: University of Barcelona


ncbi_country: China: Henan

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Aequorivita sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang university


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Bryobacterales bacterium


ncbi_submitter: UTsouthwestern Medical Center


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Xinjiang Agricultural University


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Akkermansia sp.


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Lactobacillus johnsonii pf01


ncbi_country: Japan

ncbi_isolation_source: Swab sample of faucet part of tea dispenser

ncbi_submitter: Toho University


ncbi_country: New Zealand

ncbi_isolation_source: chicken carcass rinse samples

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Massey University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus HOAG6017

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_assembly_name: Rumen uncultured genome RUG165

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: milk

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Hangzhou Minsheng Healthcare Co., Ltd.


ncbi_country: USA: PA

ncbi_isolation_source: pleural cavity

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Shandong

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: tree bark

ncbi_organism_name: Archangium sp. Cb G35

ncbi_strain_identifiers: Cb G35

ncbi_submitter: University of Mississippi


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Candidatus Peribacteraceae bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;x__unclassified Candidatus Peribacteraceae;s__Candidatus Peribacteraceae bacterium


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_submitter: University College London (UCL)


ncbi_country: Lebanon

ncbi_organism_name: Salmonella enterica

ncbi_strain_identifiers: SAGM-KPC

ncbi_submitter: LAU


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Dialister sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: China

ncbi_isolation_source: eleuthero root powder

ncbi_organism_name: Cronobacter sakazakii


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Truepera sp. bin119

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_organism_name: Escherichia albertii

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: Bile

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Oscillibacter sp.


ncbi_country: South Korea

ncbi_organism_name: Ectobacillus panaciterrae DSM 19096

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: Seawater

ncbi_organism_name: Lentibacter algarum

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Guangxi

ncbi_organism_name: Kosakonia sacchari

ncbi_submitter: East China University of Technology


ncbi_country: Mexico: Navolato; Sinaloa

ncbi_isolation_source: Culiacan River; Cofradia de San Pedro

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: EMG


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Portion of Sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: Liverpool Epidemic Strain

ncbi_submitter: UNIVERSITY OF LIVERPOOL


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter coli BIGS0009

ncbi_submitter: Swansea University


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: Boston; MA

ncbi_isolation_source: broncoscopy

ncbi_organism_name: Staphylococcus aureus M0417

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA: Livermore; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_submitter: University of California, Berkeley


ncbi_country: Vanuatu: Efate

ncbi_isolation_source: light organ

ncbi_organism_name: Candidatus Photodesmus anomalopis

ncbi_submitter: University of Michigan


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD9028

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IA

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Edwardsiella ictaluri

ncbi_submitter: Mississippi State University


ncbi_organism_name: Empedobacter sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Ao Han Banner

ncbi_isolation_source: soil

ncbi_organism_name: Actinoplanes aureus

ncbi_submitter: School of life science


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_strain_identifiers: ICMP 4917

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Megasphaera micronuciformis

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Kenya

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Draconibacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Streptomyces sp. SudanB25_2051

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Institute of Experimental Medicine


ncbi_organism_name: Peribacillus butanolivorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Ktedonobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Candidatus Egerieisoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;x__Clostridiaceae incertae sedis;g__Candidatus Egerieisoma;x__unclassified Candidatus Egerieisoma;s__Candidatus Egerieisoma sp.


ncbi_country: Canada: Calgary

ncbi_isolation_source: cecum matter of weanling rat after 6 hour fasting; S4

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Salmonella sp. 2021_1567

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: bacterium


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillibacter sp. ER4

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Shewanella sp. JCM 19057

ncbi_submitter: Microbe Division/JCM, RIKEN BioResource Center


ncbi_country: Bulgaria

ncbi_isolation_source: water

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: FOI Swedish Defence Research Agency


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Photobacterium iliopiscarium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Sweden: Uppsala

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Uppsala University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Candidatus Competibacter sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Competibacteraceae;g__Candidatus Competibacter;x__environmental samples;s__uncultured Candidatus Competibacter sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangzhou

ncbi_isolation_source: heart

ncbi_submitter: SouthChina Agriculture University


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: NC

ncbi_isolation_source: Yolk Sac

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: US Food and Drug Administration


ncbi_country: Turkey: Nevsehir

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces scabichelini

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Portugal: Vila Real

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Campylobacter jejuni


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Desulfobulbus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: Germany

ncbi_isolation_source: lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Australia: Sydney

ncbi_submitter: The University of Sydney


ncbi_organism_name: Pantoea sp. S18

ncbi_submitter: Anhui Polytechnic University


ncbi_country: Norway

ncbi_isolation_source: seawater

ncbi_organism_name: Sulfitobacter sp. CB2047

ncbi_submitter: The University of Tennessee


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Nigeria: Lagos

ncbi_isolation_source: water from electronic waste dumpsite

ncbi_submitter: University of Ibadan, Nigeria


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: Loki non-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Sulfitobacter litoralis

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Citrobacter farmeri

ncbi_submitter: Doherty Applied Microbial Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Forsyth Institute


ncbi_country: USA: Arkansas Broiler farm

ncbi_isolation_source: bone from lame broiler

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: Germany: Ploen

ncbi_isolation_source: Cecum contents

ncbi_organism_name: Bacteroides muris (ex Fokt et al. 2023)

ncbi_submitter: Max Planck Institute for Evolutionary Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides muris (ex Fokt et al. 2023)


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: Gorillibacterium massiliense

ncbi_submitter: ebi


ncbi_country: Hong Kong

ncbi_isolation_source: water

ncbi_organism_name: Patescibacteria group bacterium UBA5532

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium UBA5532


ncbi_country: United Kingdom:Northern Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.


ncbi_assembly_name: Rumen uncultured genome RUG11487

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. PDM21

ncbi_submitter: University of Chicago


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Aarhus University


ncbi_country: France: Auxerre

ncbi_isolation_source: cerebrospinal fluid

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-686-P08

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Hoylesella pleuritidis

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Slovenia

ncbi_isolation_source: Large intestine; fecal sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National laboratory for health, environment and food


ncbi_submitter: University of Rhode Island


ncbi_organism_name: Lentisphaerota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__unclassified Lentisphaerota;s__Lentisphaerota bacterium


ncbi_organism_name: uncultured Caldilineales bacterium


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: SC


ncbi_country: USA: Indian River Lagoon; Florida

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: University of Central Florida


ncbi_country: Sweden: Goteborg

ncbi_isolation_source: urine

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: Institute of Genomics and Integrative Biology


ncbi_organism_name: Streptomyces syringium

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: United Kingdom

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Southampton


ncbi_organism_name: Enterococcus sp. C38

ncbi_submitter: Northwest A & F University


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Rakuno Gakuen University


ncbi_country: Canada: Quebec City

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Peru:Ascope; Chicama; Sector Peaje

ncbi_organism_name: Yersinia pestis PY-54

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Norway

ncbi_isolation_source: Marine fjord sediment

ncbi_organism_name: Micromonospora fiedleri

ncbi_submitter: Newcastle University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Caecibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces griseus


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Undibacter sp.


ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces diastaticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Streptomyces sp. NPDC059425


ncbi_organism_name: Arsenophonus sp. ET-KM2-MAG3

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_organism_name: Paracoccus marcusii

ncbi_submitter: Chungbuk National University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Firmicutes bacterium AF16-15

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF16-15


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Liaocheng University


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces cyaneofuscatus


ncbi_country: Nigeria

ncbi_isolation_source: ECS

ncbi_submitter: Austrian Agency for Health and Food Safety


ncbi_organism_name: Photobacterium angustum

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Ignavibacteria bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__environmental samples;s__uncultured Ignavibacteria bacterium


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Shenzhen

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: BGI


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Klebsiella sp. JB_Kp001

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Longicatena sp.

ncbi_submitter: China Agricultural University


ncbi_country: China: Guangdong

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_assembly_name: Rumen uncultured genome RUG14453

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0780

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: China: Suzhou

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Lund University