gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: USA: Boston; MA

ncbi_genome_representation: full

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0456

ncbi_submitter: Broad Institute


ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Streptococcus hyointestinalis

ncbi_submitter: EMG


ncbi_country: Indian Ocean

ncbi_isolation_source: deep-sea hydrothermal vent

ncbi_organism_name: Sulfurovum sp.

ncbi_submitter: HKUST


ncbi_isolation_source: jejunum

ncbi_organism_name: Brachybacterium massiliense

ncbi_submitter: Quadram Institutte


gtdb_representative: t

ncbi_assembly_name: Rumen uncultured genome RUG11260

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: Lomas Bayas Desert Soil Beside Boulder

ncbi_organism_name: bacterium

ncbi_submitter: University of Duisburg-Essen


ncbi_country: USA: International Space Station

ncbi_isolation_source: PROTECT experiment; Tray 1; Comp 2; dark layer

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_assembly_level: Complete Genome

ncbi_country: Finland

ncbi_isolation_source: Meatball soup; FP

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: University of Helsinki


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: Rumen uncultured genome RUG11729

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Corynebacterium durum


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ireland

ncbi_isolation_source: Cutting Room- Wall

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Viet Nam: Thai Binh

ncbi_isolation_source: root

ncbi_organism_name: Salinicola sp. DM10

ncbi_submitter: Vietnam Academy of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Parcubacteria group bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium


ncbi_organism_name: Salmonella enterica subsp. arizonae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1073

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Ilumatobacteraceae bacterium


ncbi_country: China

ncbi_submitter: College of Life Science


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Thiomicrospira sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Humidesulfovibrio sp.

ncbi_submitter: Zhejiang University


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: France

ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Acutalibacter muris


ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_organism_name: Vibrio sp. 1557

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Korea: Jinju

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Kazakhstan

ncbi_organism_name: Francisella tularensis subsp. mediasiatica

ncbi_submitter: SRCAMB


ncbi_assembly_name: WGS using MinION R10.4.1 of Staphylococcus aureus TUM22749

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Toho University


ncbi_country: USA: WA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Washington


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG12305

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Ancona

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universita Politecnica delle Marche


ncbi_assembly_name: IMG-taxon 2654588206 annotated assembly

ncbi_organism_name: Ruminococcaceae bacterium KH2T8

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Slovenia

ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_submitter: TOPCAPI consortium


ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus cereus


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Selenomonadaceae bacterium


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Asan medical center, University of Ulsan College of Medicine


ncbi_organism_name: Bradyrhizobium sp. RT10b

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Loktanella sp. Alg231_35

ncbi_isolate: Loktanella sp. Alg231_35

ncbi_isolation_source: sea water

ncbi_organism_name: Loktanella sp. Alg231-35

ncbi_strain_identifiers: Loktanella sp. Alg231_35

ncbi_submitter: Elham Karimi


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_country: Norway

ncbi_isolation_source: Exudate from ulcer

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Swedish Defence Research Agency


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Nisaea sp.

ncbi_submitter: University of Southern California


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Acetothermia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Bipolaricaulota;x__unclassified Candidatus Bipolaricaulota;s__Candidatus Acetothermia bacterium


ncbi_assembly_name: IMG-taxon 2687453686 annotated assembly

ncbi_organism_name: Variovorax sp. YR750


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Zurich


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Canada: Guelph

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: China: Dagang oilfield; Tianjin

ncbi_isolation_source: soil polluted by oil

ncbi_organism_name: Falsochrobactrum tianjinense

ncbi_refseq_category: reference genome

ncbi_submitter: Tianjin University

ncbi_type_material_designation: assembly from type material


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sichuan University


ncbi_country: China: Shandong; Weihai

ncbi_isolation_source: sediments

ncbi_organism_name: Gramella sp. KN1008

ncbi_submitter: Shandong University


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Germany

ncbi_organism_name: Leptospira borgpetersenii str. Brem 328

ncbi_strain_identifiers: Brem 328

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira borgpetersenii;x__Leptospira borgpetersenii str. Brem 328


ncbi_country: Canada: Serpentine Watershed

ncbi_isolation_source: surface water

ncbi_submitter: University of British Columbia


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: stool


ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Tissue

ncbi_organism_name: Enterobacter sp. MGH 24

ncbi_strain_identifiers: MGH 24

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 24


ncbi_country: India

ncbi_isolation_source: feces

ncbi_submitter: SC


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Petrotogales bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_country: New Zealand: North Canterbury

ncbi_organism_name: Pseudomonas sp. H22_DOA

ncbi_submitter: The New Zealand Institute for Plant and Food Research Limited


ncbi_country: USA: CA

ncbi_organism_name: Enterobacter hormaechei


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 0.2-1 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Neisseria sicca

ncbi_submitter: BGI


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_assembly_name: Rumen uncultured genome RUG10886

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Litorimonas sp. RW-G-Af-16

ncbi_submitter: Chung-Ang university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Roseburia sp.


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Switzerland

ncbi_organism_name: Francisella tularensis subsp. holarctica

ncbi_submitter: Spiez Laboratory


ncbi_assembly_name: IMG-taxon 2695421046 annotated assembly

ncbi_organism_name: Wenxinia saemankumensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


gtdb_type_species_of_genus: t

ncbi_country: Japan: Chiba

ncbi_organism_name: Acanthopleuribacter pedis

ncbi_submitter: Guangxi University


ncbi_country: Romania: Movile Cave

ncbi_isolation_source: Upper gallery; floor level; 50-70 cm from the wall

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Faculty of Biology and Geology, Babes-Bolyai University of Cluj-Napoca


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Paraburkholderia sp. A2RI-6

ncbi_submitter: KU Leuven


ncbi_organism_name: Psychrobacter sp. AOP31-A1-22

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: INEI - ANLIS Dr. Carlos G. Malbran


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Dehalococcoides sp.


ncbi_organism_name: uncultured Hyphomicrobiales bacterium


ncbi_organism_name: Klebsiella sp. 1SOBk7mer

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: uncultured Rhodothermales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Rhodothermota;c__Rhodothermia;o__Rhodothermales;x__environmental samples;s__uncultured Rhodothermales bacterium


ncbi_organism_name: uncultured Bacteroidaceae bacterium


ncbi_organism_name: Cardiobacteriaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Thailand:Nakhon Ratchasima; Sakaerat

ncbi_isolation_source: Seed

ncbi_organism_name: Gluconobacter wancherniae NBRC 103581

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: Liver and spleen

ncbi_organism_name: Escherichia coli O2:K1:H7

ncbi_strain_identifiers: APEC E18055

ncbi_submitter: Seoul National University


ncbi_isolation_source: Distal colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leuconostoc lactis

ncbi_submitter: University of Queensland


ncbi_country: Netherlands

ncbi_isolation_source: Casein pipeline

ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: NIZO food research


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: China: Luzhou

ncbi_isolation_source: sputum

ncbi_submitter: the Affiliated Hospital of Southwest Medical University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFOXYB1_FULL_39_16


ncbi_organism_name: Blautia sp.


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: Philadelphia; PA

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Arctic Ocean: Gakkel Ridge

ncbi_isolation_source: Loki non-amplified sample from Loki s castle hydrothermal vent sediment

ncbi_organism_name: Maribacter sp.


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus HBHO6021

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Chryseobacterium sp. NRRL B-14859

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Chryseobacterium;x__unclassified Chryseobacterium;s__Chryseobacterium sp. NRRL B-14859


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SurvCARE


ncbi_country: China: Lengshuijiang; Hunan

ncbi_isolation_source: tailing mud from antimony mine

ncbi_organism_name: Stenotrophomonas lactitubi

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: Cucumibacter sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane

ncbi_isolation_source: necrotising fasciitis wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Manganitrophaceae bacterium

ncbi_submitter: University of Oklahoma

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Candidatus Troglogloeales;f__Candidatus Manganitrophaceae;x__unclassified Candidatus Manganitrophaceae;s__Candidatus Manganitrophaceae bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Desulfocapsaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_country: USA: Chicago; IL; Near Lake Michigan on the Museum Campus

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus sp. 32O-W

ncbi_submitter: Illinois Institute of Technology


ncbi_country: India

ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_submitter: Anses


ncbi_country: South Korea

ncbi_organism_name: Flavobacterium soli DSM 19725

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium;s__Flavobacterium soli;x__Flavobacterium soli DSM 19725


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: USA: Northfield

ncbi_isolation_source: Zebrafish tank water

ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: University of Minnesota, Twin Cities


ncbi_organism_name: Marinobacter nauticus ATCC 49840

ncbi_submitter: Genoscope CEA

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: Taiwan

ncbi_isolation_source: Taichung Veterans General Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Chung Cheng University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_organism_name: Tardiphaga sp.

ncbi_submitter: Aarhus University


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: India: Nagaon; Alibag

ncbi_isolation_source: water canal

ncbi_organism_name: Methylococcaceae bacterium WWC4

ncbi_submitter: MACS Agharkar Research Institute


ncbi_country: Japan

ncbi_isolation_source: sputum of a patient suspected with respiratory tract infection

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Fukushima Medical University


ncbi_organism_name: Adlercreutzia shanghongiae

ncbi_submitter: State Key Laboratory of Infection Disease Prevention and Control


ncbi_country: Australia

ncbi_isolation_source: ovine abscess

ncbi_submitter: Rede Paraense de Genomica e Proteomica


ncbi_country: USA: Silver Spring

ncbi_organism_name: Segatella copri DSM 18205

ncbi_submitter: US Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Segatella;s__Segatella copri;x__Segatella copri DSM 18205


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_isolation_source: gut

ncbi_organism_name: Enterococcus termitis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: New Zealand

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_country: Canada: Montreal

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Croceicoccus mobilis

ncbi_submitter: Xiamen University


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Tracheal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Wisconsin

ncbi_organism_name: Streptomyces sp. SID10853

ncbi_submitter: University of Wisconsin Madiso


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz 2756 C1

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2756 C1


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: PA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Mexico: Nuevo Leon; Monterrey

ncbi_organism_name: Staphylococcus cohnii subsp. cohnii

ncbi_submitter: Universidad Autonoma de Nuevo Leon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;x__Staphylococcus cohnii species complex;s__Staphylococcus cohnii;sb__Staphylococcus cohnii subsp. cohnii


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: The University Hong Kong


ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_country: USA: Virginia

ncbi_isolation_source: tomato seedling in spring 2005

ncbi_organism_name: Pseudomonas syringae pv. tomato K40

ncbi_submitter: Virginia Tech

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. tomato;x__Pseudomonas syringae pv. tomato K40


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 70 (4-2963531)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 70 (4-2963531)


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_assembly_name: freshwater MAG --- AM-2014-D3_bin-442

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chthonomonas sp.

ncbi_submitter: BILS


ncbi_country: Kazakhstan

ncbi_organism_name: Sinorhizobium meliloti CIAM1775

ncbi_submitter: JGI


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 3610

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolate: AOP34_BR2_surf _bin _10

ncbi_organism_name: Brevibacterium yomogidense

ncbi_strain_identifiers: AOP34_BR2_surf _bin _10

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces rochei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: University of Nevada, Reno


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Burdur Mehemet Akif Ersoy University


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudohongiella sp.

ncbi_submitter: The University of Texas at Austin


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alloprevotella sp.


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: urine

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: intestinal content

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: household surface

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: [Eubacterium] brachy

ncbi_submitter: EMG


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus avium

ncbi_submitter: University of Washington


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli BCE008_MS-13

ncbi_submitter: IGS


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_strain_identifiers: MSSA


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: Belgium

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Aarhus University


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Bangladesh: Nandipara

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oxford University Clinical Research Unit


ncbi_country: USA: PA

ncbi_isolation_source: porcine pleural cavity

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: blood

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Vicinamibacteria bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu

ncbi_isolation_source: feces

ncbi_submitter: Nanjing agticultural university


ncbi_country: Spain

ncbi_isolation_source: Auricular swab

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad de Murcia


ncbi_country: Chile: Tarapaca; Salar de Huasco; H3 site

ncbi_isolation_source: Sediment sample

ncbi_organism_name: Exiguobacterium sp. SH3S1

ncbi_submitter: Universidad Andres Bello

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. SH3S1


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: groundwater

ncbi_submitter: University of Queensland


ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Sphaerisporangium krabiense

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Bacillus spizizenii

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_assembly_name: Rumen uncultured genome RUG14290

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Taiwan: Taoyuan City

ncbi_organism_name: Streptococcus taoyuanensis

ncbi_submitter: Ming Chuan University


ncbi_country: Japan: Osaka

ncbi_isolation_source: lymph node

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_country: Antarctica: Ross Sea

ncbi_isolation_source: marine sediments

ncbi_organism_name: Shewanella psychromarinicola

ncbi_submitter: Karolinska Institutet


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 135

ncbi_submitter: Oregon State University


ncbi_country: Switzerland

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Ausgem


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Spain: El Bierzo; Castilla y Leon

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Oviedo


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_assembly_name: Rumen uncultured genome hRUG856


ncbi_country: France: Auvergne

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Guizhou; Fuquan

ncbi_isolation_source: soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces


ncbi_organism_name: Cutibacterium granulosum

ncbi_submitter: Tianjin Nankai Hospital


ncbi_country: China

ncbi_organism_name: Streptomyces sp. HG99

ncbi_submitter: University of Jinan


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: IMG-taxon 2693429862 annotated assembly

ncbi_organism_name: Marinobacterium lutimaris

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Namibia

ncbi_isolation_source: Soil from the Namib Desert

ncbi_organism_name: Pseudarthrobacter sp. NamE5

ncbi_submitter: AUT University


ncbi_country: USA: CA

ncbi_isolation_source: Raw Milk

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_submitter: Michigan State University


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_strain_identifiers: Bir 48


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: University of Copenhagen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 91 - depth 500m

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: USA: Alabama

ncbi_isolation_source: Oyster

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: chicken

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: pig

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: North Carolina

ncbi_submitter: University of Maryland, School of Medicine


ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Jacksonbacteria bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Jacksoniibacteriota;x__unclassified Candidatus Jacksonbacteria;s__Candidatus Jacksonbacteria bacterium


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Longimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Synechococcus sp.

ncbi_submitter: China University of Geosciences


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: National Taiwan University


ncbi_isolate: GDQY

ncbi_organism_name: Candidatus Profftella armatura

ncbi_strain_identifiers: GDQY

ncbi_submitter: School of Life Sciences and Food Engineering

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Betaproteobacteria;o__;f__;g__Candidatus Profftella;s__Candidatus Profftella armatura

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Profftella;s__Candidatus Profftella armatura


ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_organism_name: Candidatus Methylopumilus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Kobe Institute of Health


ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Yunnan University


ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Streptomyces sp. NPDC059985


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Amycolatopsis sp. cmx-4-68

ncbi_submitter: Institute of Medicinal Biotechnology, Chinese Academy of Medical Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China: CGMCC

ncbi_isolation_source: CGMCC

ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: Dalian University of Technology


ncbi_country: South Korea: Cheon-an

ncbi_organism_name: Jeotgalibaca dankookensis

ncbi_submitter: Korea Polar Research Institute


ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Spain: Asturias

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Spain

ncbi_isolation_source: feces

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Surrey


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: USA: FL

ncbi_isolation_source: fecal calf

ncbi_submitter: US Food and Drug Administration


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella sp. 10

ncbi_submitter: UMCG


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_organism_name: Pseudomonadota bacterium


ncbi_organism_name: Ruminococcus bicirculans (ex Wegman et al. 2014)

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: SAR116 cluster bacterium MED-G05

ncbi_submitter: Universidad Miguel Hernandez

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__unclassified Candidatus Puniceispirillales;s__SAR116 cluster bacterium MED-G05


ncbi_isolation_source: freshwater

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Pontiellaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_assembly_name: freshwater MAG --- LJ-7-9m_bin-0939

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter gerneri

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 2573

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Proteus penneri

ncbi_submitter: SC


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. MPR-R1B

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Jinhua

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_submitter: JGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Pectobacteriaceae;g__Brenneria;s__Brenneria salicis;x__Brenneria salicis ATCC 15712 = DSM 30166


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: turkey

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: U.S. Food and Drug Administration


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: kidney preservation fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG12723

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp. TM04-9

ncbi_submitter: BGI


ncbi_country: Japan

ncbi_isolation_source: Hospital sewage

ncbi_organism_name: Enterobacter soli

ncbi_submitter: Tokyo Medical and Dental University


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: INRAE


ncbi_organism_name: uncultured Tannerella sp.


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: HBSJRP 18-3.1

ncbi_submitter: University of Sao Paulo


ncbi_country: USA: WIsconsin

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. rh207

ncbi_submitter: Cornell University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_country: China: Wenzhou

ncbi_isolation_source: stool from neonate

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Scope

ncbi_organism_name: Citrobacter cronae

ncbi_submitter: University of Pittsburgh


ncbi_country: South Korea

ncbi_isolation_source: clinical sample

ncbi_organism_name: Vibrio cholerae VC0101557

ncbi_submitter: Chunlab Inc.


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal tissue

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDB20D92A

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Streptococcus oralis subsp. tigurinus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Nonomuraea dietziae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolate: metabat2_6730_HET_VAC_hybrid.12 MAG

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_strain_identifiers: metabat2_6730_HET_VAC_hybrid.12 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Yantai University


ncbi_country: China

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Soil

ncbi_submitter: MASSEY UNIVERSITY


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: feed

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_country: Denmark: Odense

ncbi_isolation_source: Blood culture

ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Odense University Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_country: Atlantic Ocean

ncbi_isolation_source: deep sea sediments associated with petroleum seepage

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: WA

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Washington


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Allosphingosinicella sp.

ncbi_submitter: Zhejiang University


ncbi_assembly_name: freshwater MAG --- A14_bin-1303

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Nitrospira sp.


ncbi_organism_name: Listeria monocytogenes FSL J2-064

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes FSL J2-064


ncbi_country: India: Tiruvallur

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis M1926


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence and no molasses

ncbi_organism_name: Leifsonia sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- Loc090402-7m_bin-0641

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: bacterium

ncbi_submitter: Inha University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Galway


ncbi_submitter: Chattogram Veterinary and Animal Sciences University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Trinickia sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Flavobacterium covae

ncbi_submitter: The University of Sydney


ncbi_organism_name: Undibacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 603

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Oceaniferula sp.

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: UNIVERSIDAD AUTONOMA CHAPINGO


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Halomonas sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_organism_name: Borreliella valaisiana

ncbi_submitter: INRAe


ncbi_organism_name: Bacteroides faecis MAJ27

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Cyanobium sp. D4_MAG_00019

ncbi_submitter: University of Montreal


ncbi_assembly_name: IMG-taxon 2667527446 annotated assembly

ncbi_organism_name: Massilia yuzhufengensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Rothia sp. ARF10

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. ARF10


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Flavobacterium helocola

ncbi_submitter: Dongguk University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: IMG-taxon 2619619048 annotated assembly

ncbi_organism_name: Flagellimonas taeanensis


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Center for Bioinformatics


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Berkelbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Berkelbacteria;x__unclassified Candidatus Berkelbacteria;s__Candidatus Berkelbacteria bacterium


ncbi_isolation_source: Faeces


ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Australia

ncbi_isolation_source: Pig nares

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: United Kingdom: Leicester

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Leicester


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: EMG


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_assembly_name: Rumen uncultured genome RUG10630

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: sub-gingival plaque

ncbi_organism_name: Tannerella forsythia

ncbi_submitter: UNIVERSITY OF SHEFFIELD


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Anaerophaga sp.

ncbi_submitter: The Ohio State University


ncbi_assembly_name: Rumen uncultured genome RUG12796

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: University of Florida


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;x__unclassified Capnocytophaga;s__Capnocytophaga sp. oral taxon 335;x__Capnocytophaga sp. oral taxon 335 str. F0486


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: ICU

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: wastewater

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycoplasmopsis fermentans PG18

ncbi_submitter: M Bio Technology Incorporation


ncbi_country: USA: New Jersey

ncbi_isolation_source: Wastewater sludge

ncbi_organism_name: Azoarcus sp. DD4

ncbi_submitter: New Jersey Institute of Technology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Salt Lake City

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Cleveland Clinic


ncbi_organism_name: Escherichia coli

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Canada: Quebec

ncbi_isolation_source: Newborn 2-009 diaper feces at 7 days after birth

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Institut national de la recherche scientifique


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: WA

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: India: Chora Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Arthrobacter sp. NIO-1057

ncbi_submitter: CSIR-National Chemical Laboratory


ncbi_country: South Korea

ncbi_isolation_source: seawater

ncbi_organism_name: Polaribacter ponticola

ncbi_submitter: Chung-Ang university


ncbi_country: France: Montpellier; Verdanson river

ncbi_isolation_source: water

ncbi_submitter: Equipe Physe, UMR5151 HydroSciences Montpellier


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: China: Nanjing

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mucispirillum schaedleri ASF457


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus balticus

ncbi_submitter: University of Alberta


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: BGI


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-3022

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Desulfomonile sp.

ncbi_submitter: BILS


ncbi_organism_name: Chlamydia trachomatis Sweden2

ncbi_submitter: Wellcome Trust Sanger Institute


ncbi_isolation_source: porpoise

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_isolation_source: human stool

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Dorea longicatena

ncbi_submitter: University of Queensland


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Mycoplasma sp.

ncbi_submitter: addis ababa university


ncbi_country: Japan:Ibaraki; Tsukuba

ncbi_isolation_source: mesophilic sediment

ncbi_organism_name: Sideroxyarcus emersonii

ncbi_submitter: RIKEN-BRC


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-5984

ncbi_organism_name: uncultured Granulicella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: stanford university school of medicine


ncbi_submitter: Mississippi State University


ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium ginsengiterrae

ncbi_submitter: Xiamen University


ncbi_organism_name: Aminobacteriaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ktedonobacter sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: University of Montreal


ncbi_organism_name: uncultured Fluviicola sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 10m

ncbi_organism_name: Nocardioides sp. REDSEA-S40_B4

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: Puerto Rico: Maunabo

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: Tracheobronchial lavage

ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Prevotella sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_submitter: Lab of Microbial Oceanography


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Sansalvadorimonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Lactobacillales bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Prevotella veroralis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Oceanobacillus aidingensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Caldilineaceae bacterium


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of Queensland


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin43

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: MDV bin43

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NBC_01386

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bosea massiliensis


ncbi_organism_name: Candidatus Fervidifonticultor quintus

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Fervidifonticultor;s__Candidatus Fervidifonticultor quintus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Humicultoraceae;g__Candidatus Fervidifonticultor;s__Candidatus Fervidifonticultor quintus


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Inhella sp.

ncbi_submitter: University of Michigan


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: CDC


ncbi_country: France: Loir et Cher

ncbi_isolation_source: Poultry Farm

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Anses


ncbi_assembly_name: Pseudomonas fuscovaginae SE-1

ncbi_country: Philippines

ncbi_isolation_source: plants showing symptoms of brown sheath rot

ncbi_organism_name: Pseudomonas fuscovaginae SE-1

ncbi_submitter: Colorado State University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thiodubiliella;s__Candidatus Thiodubiliella endoseptemdiera


ncbi_country: Australia: East coast

ncbi_isolation_source: Prawn digestive tract

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Macquarie University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Providencia rettgeri

ncbi_strain_identifiers: FDAARGOS 1450

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacteriaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: China: Anhui

ncbi_isolation_source: Pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Candidatus Anaerofilum faecale

ncbi_submitter: Quadram Institutte


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: hospital NICU surfaces and sink samples

ncbi_organism_name: Micavibrio aeruginosavorus


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK193

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_isolation_source: environmental swab

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. 629163


ncbi_country: USA: Brevard; FL

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona;x__Salmonella enterica subsp. enterica serovar Agona str. 241981


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Yale University


ncbi_country: Spain: Galicia

ncbi_isolation_source: Gingival crevicular fluid

ncbi_organism_name: Parvimonas micra

ncbi_submitter: Biomedical research institute (INIBIC)


ncbi_organism_name: Escherichia sp. 93.0724


ncbi_organism_name: Stenotrophomonas lactitubi


ncbi_organism_name: Devosia subaequoris

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_isolation_source: soil; Death Valley; CA

ncbi_organism_name: Actinopolyspora mortivallis DSM 44261

ncbi_submitter: JGI


ncbi_organism_name: Candidatus Blautia excrementipullorum


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Ornithobacterium rhinotracheale

ncbi_submitter: National Vererinary Research Intitute


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Acidaminococcus sp.


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: EMG


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China

ncbi_isolation_source: Pleural fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_isolation_source: vacuum-packaged beef

ncbi_organism_name: Dellaglioa algida DSM 15638

ncbi_submitter: Shanghai Majorbio

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Dellaglioa;s__Dellaglioa algida;x__Dellaglioa algida DSM 15638


ncbi_organism_name: uncultured Butyricicoccus sp.


ncbi_country: China: Zhejiang; Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_isolation_source: BLOOD

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: Malaysia: Johor Bahru

ncbi_isolation_source: seawater

ncbi_organism_name: Marinobacter litoralis

ncbi_submitter: School of Bioprocess Engineering, Universiti Malaysia Perlis, Malaysia.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: Missouri; St. Louis

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium intracellulare

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: AAFC


ncbi_organism_name: Lactococcus lactis


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Gaiellaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: fermented fish sauce

ncbi_organism_name: Staphylococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Estonia

ncbi_isolation_source: wound secretion

ncbi_submitter: University of Tartu


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Viet Nam

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Actinotalea caeni


ncbi_country: USA: Buffalo; NY

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: USA: Washington; Seattle

ncbi_isolation_source: female subgingival plaque

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: The Roslin Institute (University of Edinburgh)


ncbi_organism_name: Adlercreutzia equolifaciens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Porphyromonadaceae bacterium UBA7043


ncbi_country: USA: San Diego County; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Medicinal Microbiology, Immunology and Parasitology


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: China Medical University


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Georgia Tech


ncbi_country: Taiwan

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Czech Republic: SurGal Clinic Brno

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Chryseobacterium binzhouense


ncbi_organism_name: Actinomyces bouchesdurhonensis

ncbi_submitter: URMITE


ncbi_country: Brazil: Sao Paulo

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: USA: Maywood; IL

ncbi_submitter: Loyola University Chicago


ncbi_country: USA: Kansas

ncbi_submitter: University of Guelph


ncbi_country: United Kingdom

ncbi_isolation_source: fecal sample

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: University of Surrey


ncbi_country: Hong Kong

ncbi_isolation_source: Shek Wu Hui WWTPs_67 WWTPs effluent

ncbi_organism_name: Shigella flexneri

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_submitter: ANIWHA


ncbi_country: USA: Tillamook County; Oregon

ncbi_submitter: JCVI


ncbi_country: Thailand: Buriram

ncbi_isolation_source: Food; market

ncbi_submitter: Ministry of Public Health-Thailand

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: P3 C A28

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: Costa Rica

ncbi_isolation_source: Fish tissue

ncbi_organism_name: Edwardsiella anguillarum

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Victoria

ncbi_isolation_source: Foam on activated sludge

ncbi_organism_name: Gordonia amarae

ncbi_submitter: La Trobe University


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Escherichia coli

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Streptomyces sp. NPDC053474

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Teagasc


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_country: India: Faridabad

ncbi_organism_name: Megasphaera elsdenii

ncbi_strain_identifiers: indica

ncbi_submitter: Center for Human Microbial Ecology


ncbi_organism_name: uncultured Panacagrimonas sp.


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolate: C3 bin9

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: C3 bin9

ncbi_submitter: China Agricultural University


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Tenuifilaceae bacterium


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Yangzhou University


ncbi_organism_name: Microcoleus sp. BROC3

ncbi_submitter: Palacky University Olomouc


ncbi_country: Brazil: Carolina; Maranhao

ncbi_isolate: Desfum bin_9_GBBB01

ncbi_isolation_source: non-axenic (unialgal) sample in BG-11 medium

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_strain_identifiers: Desfum bin_9_GBBB01

ncbi_submitter: Instituto de Quimica


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: New Zealand: Palmerston North

ncbi_organism_name: Campylobacter helveticus

ncbi_submitter: Massey University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: not provided

ncbi_organism_name: Selenomonas artemidis

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Monash University


ncbi_organism_name: Ligaoa zhengdingensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Italy

ncbi_isolation_source: natural whey

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Universita' Cattolica del Sacro Cuore


ncbi_assembly_name: draft genome sequence of Kurthia huakuii LAM0618

ncbi_country: China: Zhangjiakou; Hebei Province; farming corporation

ncbi_isolation_source: biogas slurry samples from a large-scale anaerobic digester

ncbi_organism_name: Kurthia huakuii LAM0618

ncbi_submitter: Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: South China sea

ncbi_isolation_source: cold seep sediment

ncbi_organism_name: Vibrio sp. LQ2

ncbi_submitter: Zhejiang University


ncbi_organism_name: Treponemataceae bacterium


ncbi_organism_name: Streptococcus parasanguinis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Thailand: Nakhon Pathom

ncbi_isolation_source: Rectal swab

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: concordia university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Clostridium sp. HMSC19B04

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Blautia sp.

ncbi_submitter: University of British Columbia


ncbi_submitter: SurvCARE


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: China: Nanjing

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_assembly_name: BGG

ncbi_country: Turkey: Ankara

ncbi_organism_name: Burkholderia mallei

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of New Hampshire


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Intestinibacter bartlettii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: California Department of Public Health


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_submitter: Quadram Institutte