ncbi_country: Germany: Braunschweig

ncbi_organism_name: Shigella boydii

ncbi_submitter: US Food and Drug Administration


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


gtdb_representative: t

ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Gemella sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_level: Scaffold

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Switzerland

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Burkholderia pseudomallei


ncbi_assembly_level: Complete Genome

ncbi_country: United Kingdom

ncbi_isolation_source: oral

ncbi_organism_name: Schaalia cardiffensis F0333

ncbi_refseq_category: reference genome

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 426863

ncbi_submitter: Institute for Genome Sciences


ncbi_isolate: SPRUCE 172

ncbi_organism_name: Bryobacteraceae bacterium

ncbi_strain_identifiers: SPRUCE 172

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_submitter: University of Jyvaskyla


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Anaerotruncus sp.

ncbi_submitter: EBI


ncbi_organism_name: Clostridioides difficile P37


ncbi_assembly_name: Rumen uncultured genome RUG10112

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China

ncbi_isolation_source: river

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: China Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Wageningen University & Research


ncbi_country: Belgium: lake Falemprise

ncbi_organism_name: Porphyrobacter sp. ULC335

ncbi_submitter: University of Neuchatel


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Kenya

ncbi_organism_name: Ruminococcus sp. UBA5884

ncbi_submitter: University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CollaBio Genomics and Bioinformatics Solutions


ncbi_assembly_level: Chromosome

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG844

ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Sporosarcina sp. FSL K6-1522

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Sporosarcina;x__unclassified Sporosarcina;s__Sporosarcina sp. FSL K6-1522


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Holdemania filiformis

ncbi_submitter: EMG


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: IN

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Yunnan

ncbi_isolation_source: swine farm

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: sichuan university


ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Macrococcoides bohemicum

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: respiratory

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_isolation_source: soil

ncbi_organism_name: Actinobacteria bacterium UBA4719

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Taegertschen

ncbi_isolation_source: raw milk cheese

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Agroscope


ncbi_country: Hong Kong

ncbi_submitter: HKU


ncbi_country: India: Kolkata

ncbi_isolation_source: Blood sample from neonates

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: California

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China: Hangzhou

ncbi_isolation_source: broncholveolr lvge fluid

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella sp. 1SHAk5cef

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: Candidatus Macondimonas diazotrophica

ncbi_submitter: National University of Singapore


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Candidatus Aphodovivens avicola

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Coriobacteriia;o__;f__;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Coriobacteriia;x__Coriobacteriia incertae sedis;g__Candidatus Aphodovivens;s__Candidatus Aphodovivens avicola


ncbi_organism_name: Yersinia intermedia

ncbi_submitter: SRCAMB


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Marivibrio sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: IA

ncbi_isolation_source: yolk

ncbi_submitter: University of Missouri

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: marine sediment

ncbi_organism_name: Paracoccus ravus

ncbi_submitter: Yeungnam University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment with retrograde maize

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Finland: Nuottaniemi; Uutela; located in eastern Helsinki

ncbi_isolation_source: Benthic water in Baltic Sea

ncbi_organism_name: Kamptonema sp. UHCC 0994

ncbi_strain_identifiers: UHCC 0994

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_type_species_of_genus: t

ncbi_isolation_source: spoiled salad dressing

ncbi_organism_name: Fructilactobacillus fructivorans

ncbi_submitter: Shanghai Majorbio

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: United Kingdom

ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Hainan University


ncbi_organism_name: Anaerolineales bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-032

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human gut


ncbi_country: USA

ncbi_organism_name: Veillonella rogosae

ncbi_strain_identifiers: AC2811 AN NA 2

ncbi_submitter: Zymo Research Corporation


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Germany

ncbi_isolation_source: bacterial culture

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Infectious Diseases Area, Respiratory Infection and Antimicrobial Resistance Group, Biogipuzkoa Heal


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: WA

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: University of Washington


ncbi_organism_name: Salinispora arenicola CNS051

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Giesbergeria sp.

ncbi_submitter: University of Waterloo


ncbi_assembly_name: freshwater MAG --- Umea3p2_bin-1177

ncbi_organism_name: uncultured Burkholderiales bacterium


ncbi_country: Ireland

ncbi_isolation_source: Poultry/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: Spain

ncbi_isolation_source: Hospital Univeristario de Bellvitge (Barcelona)

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centro Nacional de Análisis Genómico


ncbi_organism_name: Lactococcus sp.


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_country: South Korea: Pohang

ncbi_isolation_source: Sand

ncbi_organism_name: Pseudidiomarina homiensis

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Biomin Research Center


ncbi_organism_name: Burkholderia thailandensis TXDOH

ncbi_strain_identifiers: TXDOH

ncbi_submitter: NMRC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: EMG


ncbi_country: Mexico

ncbi_isolation_source: Clone 2 resistant to phage phiDCL-PA6; parent strain PA14

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UNAM


ncbi_country: India: Vellore

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: Christian Medical College


ncbi_country: USA: FL

ncbi_isolation_source: cilantro

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: Taiwan: Hospital

ncbi_isolation_source: plasma

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: [Clostridium] innocuum 2959

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Methylophaga sp. UBA5057

ncbi_submitter: University of Queensland


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: IMG-taxon 2609459631 annotated assembly

ncbi_organism_name: Dyella sp. OK004

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Uppsala University


ncbi_country: Finland

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1320

ncbi_submitter: Broad Institute


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: University of Califronia, Santa Barbara


ncbi_country: USA: GA

ncbi_isolation_source: Pond

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: FDA


ncbi_country: USA: Santa Clara

ncbi_isolation_source: Human fecal sample

ncbi_submitter: Santa Clara University


ncbi_country: China

ncbi_isolation_source: duck cloacal

ncbi_organism_name: Salmonella enterica subsp. arizonae

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Czech Academy of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Staphylococcus aureus VET0052R


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-0373

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Coxiellaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: NWO- Dunea–Vitens: Sand Filtration partnership


ncbi_assembly_name: freshwater MAG --- Ki1-2-7m_bin-886

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: Canada

ncbi_isolation_source: retail chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Swansea University


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Perth

ncbi_isolation_source: Gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou university


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Cornell University


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Leucobacter aridicollis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodobacter sp.

ncbi_submitter: Stony Brook University


ncbi_country: USA: WA

ncbi_organism_name: Rhodococcus sp. 05-2255-3B1

ncbi_submitter: Oregon State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 05-2255-3B1


ncbi_organism_name: Aphanothece sp.

ncbi_submitter: Stockholm University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: uncultured Smithella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Flemingiibacterium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Flemingiibacterium;x__unclassified Candidatus Flemingiibacterium;s__Candidatus Flemingiibacterium sp.


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: [Ruminococcus] torques


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Navamindradhiraj University


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_assembly_name: freshwater MAG --- Ja1-D4_bin-064

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Chinese PLA General Hospital


ncbi_isolation_source: not provided

ncbi_organism_name: Parascardovia denticolens

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: infection control

ncbi_submitter: JCVI


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_country: Viet Nam: Hanoi

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Thomasclavelia ramosa

ncbi_submitter: University of Chicago


ncbi_country: Argentina: La Plata; Buenos Aires

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. T

ncbi_strain_identifiers: T

ncbi_submitter: CONICET-CINDEFI- La Plata


ncbi_organism_name: Vreelandella songnenensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Finland: Lake Lovojarvi; Lammi (Hameenlinna)

ncbi_isolation_source: hypoxic lake water

ncbi_organism_name: Methylobacter sp. S3L5C

ncbi_submitter: Tampere University


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: France

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Porphyromonadaceae bacterium UBA2741

ncbi_submitter: University of Queensland


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli KTE85

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus aureus


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Scottish Marine Association for Marine Science


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: EMG


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean: near Hawaii

ncbi_isolation_source: sea water

ncbi_organism_name: Stutzerimonas frequens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_strain_identifiers: CVUAS 32842

ncbi_submitter: Chemisches und Veterinaeruntersuchungsamt Stuttgart


ncbi_country: Norway: Viken

ncbi_submitter: Norwegian University of Life Sciences


ncbi_country: China: Qixia mountain; Jiangsu

ncbi_isolation_source: sediment

ncbi_organism_name: Streptomyces sp. NA07423

ncbi_submitter: Nanjing University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. CK204

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 192 - depth 500m

ncbi_organism_name: SAR86 cluster bacterium REDSEA-S45_B6

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;s__SAR86 cluster bacterium REDSEA-S45_B6


ncbi_isolation_source: leaves of diseased walnut trees

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Hebei Agricultural University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Asturias

ncbi_isolation_source: raw milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: IPLA-CSIC


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Lactobacillus apis


ncbi_country: Colombia

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD EL BOSQUE


ncbi_country: Japan

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptomyces sp. NPDC050204

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Massachusetts

ncbi_isolation_source: dental plaque

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Marine Biological Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Portugal: Coimbra

ncbi_isolation_source: Intraabdominal infection

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_country: Russia: Irkutsk; Ushakovka river

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Eastern Canada

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: USA: Seymour; Indiana

ncbi_isolation_source: soil

ncbi_organism_name: Microbacterium sp. K21

ncbi_submitter: Central Michigan University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_isolation_source: sputum of 54-year-old male with acute myelocytic leukemia complicate by severe pneumonia

ncbi_organism_name: Enterococcus faecalis DENG1

ncbi_submitter: The Affiliated Shenzhen Nanshan Hospital of Guangdong Medical College


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University Hospital of Antwerp


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: intermediate urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho University


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Acinetobacter courvalinii


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Washington D.C.

ncbi_isolation_source: Biocathode MCL

ncbi_organism_name: Candidatus Tenderia electrophaga

ncbi_submitter: US Naval Research laboratory

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Tenderiales;f__Candidatus Tenderiaceae;g__Candidatus Tenderia;s__Candidatus Tenderia electrophaga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Candidatus Tenderiales;f__Candidatus Tenderiaceae;g__Candidatus Tenderia;s__Candidatus Tenderia electrophaga


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: Australia: Victoria

ncbi_isolation_source: dairy farm

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: CSIRO


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Escherichia coli


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Australia: Montague Island

ncbi_submitter: OUTBREAK


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Secone University Hospital, Sichuan University


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 724909

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Georgenia satyanarayanai

ncbi_submitter: Jet Propulsion Laboratory


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacteroidales bacterium UBA2722

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2722


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_country: Japan

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Bifidobacterium bifidum JCM 1254

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Germany: Kleine Schmallenau

ncbi_isolation_source: Insect

ncbi_organism_name: Rickettsia endosymbiont of Sericostoma sp.

ncbi_submitter: University of Liverpool


ncbi_isolate: Clostridium neonatale E263

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale E263

ncbi_submitter: universite paris cite


ncbi_assembly_name: LM06-01614 assembly

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: France

ncbi_isolation_source: Corse; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Enterobacter intestinihominis

ncbi_submitter: Institut Pasteur


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: University of Southern California


ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Sphingobacterium thalpophilum

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Hue University of Education


ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: groundwater

ncbi_submitter: University of Queensland


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lentimicrobiaceae bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Desulfobia pelagia

ncbi_submitter: Utrecht University


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Nocardioides nanhaiensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Ectopseudomonas chengduensis

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: vagina

ncbi_organism_name: Varibaculum cambriense

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Acinetobacter radioresistens


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Brotocaccenecus cirricatena

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Limnospira sp. PMC 1245.20

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Soudan Iron Mine; Minnesota

ncbi_isolation_source: brine fluids

ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: University of Michigan


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hainan Island

ncbi_organism_name: Pseudoalteromonas sp. SCSIO 43201

ncbi_strain_identifiers: SCSIO 43201

ncbi_submitter: South China Sea Institute of Oceanology,Chinese Academy of Sciences


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France: Besancon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Enterovibrio norvegicus

ncbi_submitter: University of Vienna


ncbi_country: China: Lvliang; Shanxi

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium sp. AUGA SZCCT0283

ncbi_strain_identifiers: AUGA SZCCT0283

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Prevotella intermedia

ncbi_submitter: EMG


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Austria: Tyrol

ncbi_organism_name: Escherichia coli

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: 22515;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_isolate: Campylobacter

ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_organism_name: uncultured Allomuricauda sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Luzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Affiliated Hospital of Southwest Medical University


ncbi_assembly_name: freshwater MAG --- MJ120716B_bin-159

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: UNC Chapel Hill


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-390-C22


ncbi_organism_name: Streptacidiphilus jiangxiensis

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake sediment

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_country: Portugal

ncbi_organism_name: Ralstonia solanacearum

ncbi_submitter: Wageningen Plant Research


ncbi_assembly_name: Escherichia coli CVM N33624PS v1.0

ncbi_country: USA

ncbi_isolation_source: Farm

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: CVM N33624PS

ncbi_submitter: FDA


ncbi_country: USA: New Hampshire

ncbi_isolation_source: small bowel brush

ncbi_organism_name: Ligilactobacillus animalis

ncbi_submitter: University of New Hampshire


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: China: Qaidam Basin

ncbi_isolation_source: hyperarid desert sheltered soil

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_assembly_name: freshwater MAG --- MJ130702A_bin-272

ncbi_organism_name: uncultured Holophagaceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: meringue

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. CDC_2010K_1010


ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 273929

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Tropheryma whipplei str. Dig9

ncbi_submitter: ebi


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: USA: Texas

ncbi_submitter: United States Department of Agriculture


ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Serratia surfactantfaciens

ncbi_submitter: Shaanxi normal university


ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_organism_name: Aeromonas media

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Denmark

ncbi_isolation_source: liver

ncbi_submitter: Technical University of Denmark, National Veterinary Institute


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Rhodothermales bacterium

ncbi_submitter: Stony Brook University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Wisconsin; near Picnic Point on the coast of Lake Mendota

ncbi_isolation_source: biofilm growing on a polymer composite week 18

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Univerisity of Wisconsin--Madison


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Massilistercora timonensis

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_submitter: Toho university


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Switzerland

ncbi_organism_name: Mixta gaviniae

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacteriaceae bacterium


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,5,12:i


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Candidatus Scatomorpha pullistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha pullistercoris


ncbi_organism_name: Bacillus inaquosorum

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal vent chimney structure

ncbi_organism_name: Hydrogenimonas urashimensis

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Science, Hokkaido University


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: field soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Streptomyces lydicus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Hahella sp. NBU794

ncbi_submitter: Ningbo university


ncbi_organism_name: uncultured Clavibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Methylocapsa sp.

ncbi_submitter: EPFL


ncbi_organism_name: Arenicella sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_country: Kuwait: Kuwait City; Kuwait Desert

ncbi_isolate: KUW bin6

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: KUW bin6

ncbi_submitter: Monash University


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Desulfobaccales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: China: Ningxia

ncbi_isolation_source: chicken cloacal swab

ncbi_submitter: China Agricultural University


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Anaeromyxobacter dehalogenans

ncbi_submitter: University Duisburg-Essen


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: France: Montpellier

ncbi_isolation_source: Domestic environment

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Equipe Physe, UMR5151 HydroSciences Montpellier


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Burkholderia pseudomallei BCC215

ncbi_submitter: NMRC


ncbi_country: Colombia: Medellin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad El Bosque


ncbi_assembly_name: freshwater MAG --- E-1_bin-068

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- F4_bin-195

ncbi_organism_name: uncultured Acetobacteraceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Thailand:Khorn Kaen

ncbi_isolation_source: Bamboo forest soil

ncbi_organism_name: Actinoplanes siamensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: South Korea

ncbi_organism_name: Pararoseomonas baculiformis

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_country: Taiwan

ncbi_isolation_source: water

ncbi_organism_name: Rubrivivax albus

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Australia: Brisbane; QLD; University of Queensland

ncbi_isolation_source: AOM-Mn bioreactor day 314

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Zhejiang

ncbi_isolation_source: kidney preservation fluid

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The First Affiliated Hospital,College of Medicine,Zhejiang University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Yersinia frederiksenii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: Finland: Olkiluoto

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Ecole Polytechnique Federale de Lausanne (EPFL)


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: EPFL


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Alkek Center for Metagenomics and Microbiome Research


ncbi_assembly_name: Draft SP4-LAU Genome

ncbi_country: Lebanon: Byblos

ncbi_isolation_source: throat swab

ncbi_organism_name: Streptococcus pyogenes SP4-LAU

ncbi_submitter: Lebanese American University


ncbi_country: Germany

ncbi_isolation_source: feces

ncbi_organism_name: Candidatus Enterococcus wittei

ncbi_submitter: Broad Institute


ncbi_isolation_source: liver equine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: United Kingdom

ncbi_isolation_source: Heifer vaginal mucus

ncbi_submitter: USDA, ARS, WRRC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter fetus;sb__Campylobacter fetus subsp. venerealis;x__Campylobacter fetus subsp. venerealis bv. venerealis;x__Campylobacter fetus subsp. venerealis NCTC 10354


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: State University of Londrina


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_submitter: Icahn School of Medicine at Mount Sinai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. BSD2780061688b_171218_H5


ncbi_country: Germany: Berlin

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_organism_name: uncultured Limnobacter sp.


ncbi_country: USA: WA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Washington


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: New Zealand: Raoul Island

ncbi_isolation_source: Hot springs and caldera lake in caldera of Raoul Island/Rangitaahua island arc volcano

ncbi_organism_name: bacterium

ncbi_submitter: GNS Science


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Acidobacteriota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond C4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Montreal


ncbi_isolation_source: oyster

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: caecum

ncbi_organism_name: Bacteroides gallinaceum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Arenimonas sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Brazil: Sergipe; Northeastern region of Brazil

ncbi_isolation_source: Musa sp. plants with Moko disease; from state of Sergipe; Northeastern region of Brazil

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: SFC

ncbi_submitter: UFRPE


ncbi_country: China:Qinghai Province

ncbi_isolation_source: spleen of an aborted yak fetus

ncbi_organism_name: Brucella suis

ncbi_submitter: China Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Desulfuromonadaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: Centers for Disease Control & Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum;x__Salmonella enterica subsp. enterica serovar Anatum str. 06-0532


ncbi_country: Sweden: Gothenburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Gothenburg - CCUG


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_country: China: Nanchang

ncbi_isolation_source: Poyang Lake

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: Acidobacteria bacterium Ga0074141

ncbi_country: USA: Ann Arbor

ncbi_isolation_source: dual media filters at the Ann Arbor; Michigan drinking water treatment plant

ncbi_organism_name: Acidobacteria bacterium Ga0074141

ncbi_submitter: University of Glasgow

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__unclassified Acidobacteriota;s__Acidobacteria bacterium Ga0074141


ncbi_organism_name: Pontibacter ruber

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acinetobacter courvalinii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Xiamen University


ncbi_submitter: University of La Rioja


ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8803

ncbi_submitter: University of Warwick


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: University of Pavia


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: University of Wyoming


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Nebraska

ncbi_isolation_source: placenta

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_assembly_name: freshwater MAG --- Erken-D5_bin-0726

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Johns Hopkins University; Baltimore; Maryland

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Helmholtz Centre for Infection Research, HZI


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: feces from female

ncbi_organism_name: Escherichia coli TOP2662-2

ncbi_submitter: National University of Singapore, Genome Institute of Singapore


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Brucella intermedia

ncbi_submitter: Palacky University Olomouc


ncbi_assembly_name: SACS

ncbi_organism_name: Parasaccharibacter apium

ncbi_submitter: UNIMI


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Arthrobacter sp.

ncbi_submitter: The University of Auckland


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: GensKey Gene Technology Co. Ltd.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Neurosurgery

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Guangzhou Medical University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Lunds Universitet


ncbi_country: France: Provence-Alpes-Cote d Azur

ncbi_isolation_source: Pork

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_organism_name: Photorhabdus laumondii

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: Bombus lapidarius

ncbi_organism_name: Snodgrassella communis

ncbi_submitter: Sciensano


ncbi_isolation_source: cold seep

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: University of Galway


ncbi_country: Australia: South Australia

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_organism_name: Gordonia sp. BP-94

ncbi_submitter: ZHEJIANG UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Gordoniaceae;g__Gordonia;x__unclassified Gordonia (in: high G+C Gram-positive bacteria);s__Gordonia sp. BP-94


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Lachnoclostridium edouardi

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Corynebacterium amycolatum

ncbi_submitter: Loyola University Chicago


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_country: Switzerland: Oberengstringen

ncbi_isolation_source: stream/river surface water

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: University of Zurich


ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Pau University


ncbi_country: Oman

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Sultan Qaboos University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Lactobacillus equicursoris

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_assembly_name: IMG-taxon 2609459742 annotated assembly

ncbi_organism_name: Arthrobacter sp. ok909

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Tennessee

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Oklahoma


ncbi_organism_name: uncultured Janthinobacterium sp.


ncbi_country: Brazil

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Catenibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_country: USA: Kansas

ncbi_isolation_source: cecal contents of broiler chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: The University of Arizona


ncbi_country: Pakistan: Faisalabad

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: National Institute for Biotechnology and Genetic Engineering (NIBGE), Faisalabad, Pakistan


ncbi_organism_name: Casimicrobiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: uncultured Bilophila sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R855;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Pseudolysobacter antarcticus

ncbi_submitter: Wuhan University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sheffield


ncbi_country: Russia: Kalmykia

ncbi_isolation_source: cheese

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_submitter: JPIAMR ARMIS


ncbi_country: China: Shenzhen

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: BGI


ncbi_country: Lebanon

ncbi_submitter: Lebanese American University


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_country: Norway: Bergen

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Haukeland University Hospital


ncbi_organism_name: Stenotrophomonas sp. 2YAF22

ncbi_submitter: CCRP


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacillus cereus MC118

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus MC118


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Republic of Khakassia; Shirinsky District; Lake Shunet

ncbi_isolation_source: 5.0 m chemocline layer of meromictic lake

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Academia Sinica


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Tunisia

ncbi_submitter: ANSES


ncbi_country: Panama: Cristobal

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha taylori

ncbi_submitter: University of California, Davis


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: The Italian National Institute of Health


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_organism_name: Pseudomonas amygdali pv. eriobotryae

ncbi_strain_identifiers: ICMP 8636

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas amygdali;x__Pseudomonas amygdali pv. eriobotryae


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: USA: Seattle

ncbi_isolation_source: urine


ncbi_organism_name: Janthinobacterium sp. RA13

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China

ncbi_isolation_source: Chinese rice wine

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: jiangnan university


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Pseudothioglobus sp.

ncbi_submitter: Tang lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;x__unclassified Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: SPRUCE 39

ncbi_organism_name: Polyangia bacterium

ncbi_strain_identifiers: SPRUCE 39

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Synechococcus sp. H55.9

ncbi_submitter: University of Montana


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_organism_name: Streptomyces sp. NPDC102359

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Thessaly


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Enterococcus mundtii

ncbi_submitter: IHU - Mediterranee Infection


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Enterococcus thailandicus

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermodesulfovibrio sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: B064;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: South Korea

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sungkyunkwan University


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NHGRI/NIH


ncbi_country: USA

ncbi_isolation_source: Respiratory

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: Waste water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7114

ncbi_submitter: University of Queensland


ncbi_country: Australia: Perth

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Adlercreutzia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudoxanthomonas sp. SORGH_AS_0997

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Guangzhou

ncbi_isolation_source: forest soil

ncbi_organism_name: Paraburkholderia adhaesiva

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Sponge: Aplysina aerophoba

ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: seawater

ncbi_organism_name: Sphingomonas ursincola

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Canada

ncbi_isolation_source: Vacuum-packaged beef

ncbi_organism_name: Carnobacterium maltaromaticum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii


ncbi_isolation_source: Colon


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Coprococcus sp.


ncbi_country: USA: New York

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria newyorkensis

ncbi_submitter: Cornell University


ncbi_country: South Korea: Chungcheongnam-do

ncbi_submitter: UNIST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Canada: British Columbia Fraser Valley

ncbi_isolation_source: fecal material

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Bangladesh: Dhaka

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Cardiff University


ncbi_assembly_name: freshwater MAG --- Loc090519-4m_bin-515

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: root

ncbi_organism_name: Marinobacter suaedae

ncbi_submitter: Dongguk University


ncbi_country: Switzerland

ncbi_isolation_source: skin of a pig

ncbi_organism_name: Macrococcus armenti

ncbi_submitter: University of Bern


ncbi_organism_name: Pseudomonas flavescens NBRC 103044

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: candidate division TA06 bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division TA06;s__candidate division TA06 bacterium


ncbi_country: United Kingdom:Northern Ireland

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: porc meat

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Rissen


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leeuwenhoekiella sp. UBA3167

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolation_source: stool

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Gambia

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: CA

ncbi_isolation_source: Raw Cream

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Streptomyces sp. NPDC051840

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: uncultured Nitrospiraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Ochrobactrum quorumnocens

ncbi_strain_identifiers: BZR 162

ncbi_submitter: Institute Cytology and Genetics SB RAS


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: Streptomyces sp. NBC_01217

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Lysinibacillus sphaericus


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Derby

ncbi_submitter: Water Quality and Environmental Biotechnology Lab


ncbi_country: New Zealand: Canterbury region

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: The University of Auckland


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_strain_identifiers: 2497MB;swab isolate 1

ncbi_submitter: University of California, Davis


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: India

ncbi_isolation_source: bovine cow lymph node

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of verona


ncbi_country: New Zealand: Enderby Island; Auckland Islands

ncbi_isolation_source: cloacal swabs or voided feces

ncbi_submitter: Massey University


ncbi_country: Antarctica

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. Z1A8

ncbi_submitter: Shandong University


ncbi_country: Japan: Okinawa

ncbi_isolation_source: Stomach biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Oita University


ncbi_organism_name: Faecalicoccus pleomorphus


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium coryneforme


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptomyces sp. NPDC059016

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Iran

ncbi_organism_name: Curtobacterium aurantiacum

ncbi_strain_identifiers: CFBP 8818

ncbi_submitter: University of Tehran


ncbi_country: Antarctica: Ross Sea

ncbi_isolation_source: sea surface microlayer

ncbi_organism_name: Pseudomonas neustonica

ncbi_submitter: KOPRI


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Ammonium sulfate bioreactor

ncbi_organism_name: Sphingomonas sp. 67-41

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Maine

ncbi_isolation_source: Cheese rind

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Tufts University


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Supermarket

ncbi_organism_name: Campylobacter coli

ncbi_submitter: LSHTM


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Academy of National Food and Strategic Reserves Administration


ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudonocardiales bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: Bethesda

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_organism_name: uncultured Granulicatella sp.

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: Goethe University Frankfurt


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Modicisalibacter luteus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus borealis

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: Sphingosinicellaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Salmonella sp. SKLX119031

ncbi_submitter: Zhejiang university


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Enterococcus sp. DIV2453a

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: mice gut

ncbi_organism_name: Turicimonas muris

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Tidjanibacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Zoogloeaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Actinoplanes sp. NPDC049802

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Candidatus Babeliales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;x__unclassified Candidatus Babeliales;s__Candidatus Babeliales bacterium