ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Colombia: Bogota

ncbi_isolation_source: poultry meat at retail store

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Corpoica


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Spongiibacteraceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0428R

ncbi_submitter: Broad Institute


ncbi_country: USA: WA

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: EMG


ncbi_country: Paraguay: Coronel Oviedo

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Eugene; Oregon

ncbi_isolation_source: Indoor dust samples

ncbi_organism_name: Microbacterium oleivorans

ncbi_submitter: Northwestern University


ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_submitter: Chang Gung Memorial Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: National Veterinary Research Institute (PIWET)


ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: KEMRI


ncbi_assembly_name: freshwater MAG --- Ja2-D4_bin-0361

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium faecium


ncbi_assembly_name: UreThermo-BF

ncbi_country: Iran: Ramsar

ncbi_isolation_source: hot spring water

ncbi_organism_name: Ureibacillus thermosphaericus str. Thermo-BF

ncbi_strain_identifiers: Thermo-BF

ncbi_submitter: Agricultural Biotechnology Research Institute of Iran


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy


ncbi_isolate: IZCEG

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


gtdb_type_species_of_genus: t

ncbi_country: USA: Utah

ncbi_isolation_source: respiratory specimen

ncbi_organism_name: Chimaeribacter arupi

ncbi_refseq_category: reference genome

ncbi_submitter: University of Utah

ncbi_type_material_designation: assembly from type material


ncbi_country: Montenegro: Kotor

ncbi_isolation_source: gill

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: LNCC


ncbi_assembly_name: PMEN

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: Fusobacterium varium

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Stenotrophomonas sp. TWI1149

ncbi_submitter: University of Technology Sydney


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Brazil

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium sp. SEMIA4064

ncbi_submitter: Univ Estadual Paulista UNESP/FCAV


ncbi_country: South Korea: Geoje Island

ncbi_isolation_source: sea sparkle bloom region

ncbi_organism_name: Sulfitobacter noctilucae

ncbi_submitter: Yonsei University


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Hellea sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Streptococcus canis

ncbi_submitter: Laboratory of Infectious Diseases, Kitasato Institute for Life Sciences, Kitasato University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Henri Mondor APHP


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Qinghai

ncbi_organism_name: Luteimonas yindakuii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Australia

ncbi_isolation_source: human

ncbi_organism_name: Morococcus cerebrosus

ncbi_submitter: Korea University


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Sulfurospirillum arcachonense

ncbi_submitter: The University of Hong Kong


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: marine

ncbi_organism_name: Halomonas sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Paraburkholderia terricola

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Lactobacillus helveticus


ncbi_country: China: Chongqing; Wanzhou; Houshan

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: Novogene

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Soochow University


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Thailand

ncbi_isolation_source: Canal

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Tang lab


ncbi_country: Norway: Bergen

ncbi_isolation_source: wastewater

ncbi_organism_name: Klebsiella sp. K5-322

ncbi_submitter: Institute of Marine research


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Toronto

ncbi_isolation_source: gut

ncbi_organism_name: Clostridium sartagoforme

ncbi_submitter: University of Toronto


ncbi_organism_name: Streptomyces sp. NBC_01590

ncbi_submitter: Technical University of Denmark


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-8423

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_country: France: Normandy; Caen

ncbi_isolation_source: Bronchoalveolar fluid

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Normandy university


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: flounder gill

ncbi_organism_name: Thalassotalea piscium

ncbi_submitter: Laboratory of Microbiology, Division of Marine Life Science, Faculty of Fisheries Sciences, Hokkaido University


ncbi_organism_name: Bacteroides ovatus


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Peptoanaerobacter stomatis

ncbi_submitter: Broad Institute


ncbi_organism_name: Salmonella enterica


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Actinoplanes digitatis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Facultad de Medicina, Universidad Autonoma de Nuevo Leon


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Brevibacterium sp. SIMBA_078

ncbi_submitter: SIMBA


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: The University of Tokyo


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Daping Hospital, The Army Medical University


ncbi_organism_name: Rhodococcus sp. 2.95

ncbi_submitter: P.G. Demidov Yaroslavl State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. 2.95


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Hydrothermal Plume

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_country: Pacific Ocean: Costa Rica Margin

ncbi_isolation_source: Single ANME:SRB aggregates separated by FACS after BONCAT. Aggregates were obtained from sediment incubations of a sediment horizon from a push core collected at a methane seep site identified by a grey bacterial mat. This site in the Costa Rica Margin is called  Mussel Beach  and is found on Mound 12. Sample is identified by sample# 9063.

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: California Institute of Technology


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Ellagibacter isourolithinifaciens


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_country: India: Vellore

ncbi_isolation_source: Endotracheal Aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: La Jolla

ncbi_isolation_source: mouse gut

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: San Diego State University


ncbi_country: USA: California; Eel River; Cedar Creek near confluence with South Fork Eel River

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Runella sp.

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-56A2

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Microbacterium hydrocarbonoxydans NBRC 103074

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: Brazil: Sao Paulo; Valinhos

ncbi_organism_name: Erwinia psidii

ncbi_strain_identifiers: IBSBF 435

ncbi_submitter: Universidade de Brasilia


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Arthrobacter oryzae

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Italy: Frasassi cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Thiomicrospira cyclica

ncbi_submitter: University Duisburg-Essen


ncbi_organism_name: Streptomyces platensis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: soil

ncbi_organism_name: Caballeronia arvi

ncbi_submitter: LM-UGent


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Netherlands

ncbi_isolation_source: Vanilla pudding

ncbi_organism_name: Bacillus cereus

ncbi_submitter: TU Muenchen


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universita Politecnica delle Marche


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_country: Norway

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: Lebanon

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Lebanese American University


ncbi_submitter: EMG


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Creighton University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Providencia rettgeri

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Mycoavidus cysteinexigens

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Northwest Territories; Eastern Beaufort Sea

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. CS-1329

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Colombia

ncbi_isolation_source: fecal sample

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Grupo de Investigaciones Microbiologicas - UR (GIMUR)


ncbi_isolation_source: artisanal dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp122


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Lengau

ncbi_isolation_source: Intermittent pond

ncbi_organism_name: Aquirufa nivalisilvae

ncbi_submitter: University of Innsbruck


ncbi_organism_name: Ligilactobacillus murinus


ncbi_submitter: KU Leuven


ncbi_organism_name: Marisediminitalea sp.

ncbi_submitter: Tang lab


ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: Plant

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: LM-UGent


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: marine sponge

ncbi_organism_name: Streptomyces tirandamycinicus

ncbi_submitter: Hainan university


ncbi_country: Japan

ncbi_isolation_source: drain drainage

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Toho university


ncbi_country: Spain: Jerez

ncbi_isolation_source: wound

ncbi_submitter: Hospital Virgen Macarena


ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG11476

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Coriobacteriaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Stellenbosch University


ncbi_isolate: metabat2_XCR1_HOM_6740_bwa.100 MAG

ncbi_strain_identifiers: metabat2_XCR1_HOM_6740_bwa.100 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lacisediminihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:England

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Colombia: Bogota

ncbi_isolation_source: animal feed; raw chicken meat at retail store

ncbi_submitter: NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG13168

ncbi_organism_name: uncultured Selenomonas sp.


ncbi_country: Germany

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Brevibacterium litoralis

ncbi_submitter: Guangxi Minzu University


ncbi_submitter: Life Technologies

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Uganda;x__Salmonella enterica subsp. enterica serovar Uganda str. R8-3404


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: South Korea: Goseong-gu Gangwon-don

ncbi_isolation_source: marine algae

ncbi_organism_name: Paraglaciecola algarum

ncbi_submitter: Chung-Ang university


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Haemaphysalis japonica


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_organism_name: Blautia caecimuris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Nitrospirales bacterium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Chromosome

ncbi_organism_name: Pseudomonas sp. UBT

ncbi_strain_identifiers: UBT

ncbi_submitter: Grupo de Estudios Quimicos y Biologicos, Universidad Tecnologica de Bolivar


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Leyella stercorea


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_country: USA: CA

ncbi_isolation_source: unripe fruit and leaf

ncbi_organism_name: Enterococcus sp. 5H

ncbi_submitter: University of California, Davis


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: La Trobe University


ncbi_country: China: Shanghai

ncbi_isolation_source: Plant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: Streptomyces olivaceoviridis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Spirochaetales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: cold seep

ncbi_organism_name: Sedimentisphaerales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_country: USA: Hoopa Valley Reservation

ncbi_isolation_source: blood sample

ncbi_organism_name: Bartonella sp. 11B

ncbi_submitter: University of Basel


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Sedimentitalea nanhaiensis DSM 24252

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: UNIVERSIDADE FEDERAL DE CIENCIAS DA SAUDE DE PORTO ALEGRE


ncbi_organism_name: Acinetobacter lwoffii

ncbi_submitter: Agroscope


ncbi_organism_name: Stieleria magnilauensis

ncbi_submitter: Radboud Universiteit Nijmegen


ncbi_country: China: South China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Aeromicrobium sp.

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: Netherlands: Delft; Harnasch polder WWTP

ncbi_isolate: labscale reactor_MAG17

ncbi_isolation_source: aerobic granular sludge sequencing batch reactor fed with glycerol; inoculum derived from raw wastewater

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_strain_identifiers: labscale reactor_MAG17

ncbi_submitter: TU Delft

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: Netherlands

ncbi_isolation_source: Wall biofilm

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Alloscardovia omnicolens


ncbi_isolation_source: physical

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Chengdu Military General Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: MT

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Cameroon

ncbi_organism_name: Vibrio cholerae O1

ncbi_submitter: Emerging Pathogens Institute, University of Florida,


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;s__Candidatus Beckwithbacteria bacterium RIFCSPHIGHO2_02_FULL_49_13


ncbi_country: Spain

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Microbacterium jiangjiandongii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Planctomycetia bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_country: China: Nanchang

ncbi_isolation_source: rectal swab from healthy participants

ncbi_submitter: beijing


ncbi_country: Netherlands: Breda

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: unverisity medical center groningen


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: seawater from oxygen minimum zone

ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Brucella abortus

ncbi_submitter: Universidade Federal de Lavras


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: Peru: Lima

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolate: metabat2_coassembly_bwa.699 MAG

ncbi_strain_identifiers: metabat2_coassembly_bwa.699 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;s__Candidatus Allocopromorpha excrementigallinarum


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: karst cave

ncbi_organism_name: Nocardioides cavernae

ncbi_submitter: China CDC


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Nitrososphaerota archaeon

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Archaea;x__Thermoproteati;p__Nitrososphaerota;x__environmental samples;s__uncultured Nitrososphaerota archaeon


ncbi_isolation_source: Hospital

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_isolation_source: carcass

ncbi_submitter: Yangzhou university


ncbi_organism_name: Chthoniobacteraceae bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: uncultured Treponemataceae bacterium


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Gleimia europaea ACS-120-V-Col10b

ncbi_submitter: Broad Institute


ncbi_country: USA: GA

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Neisseria cinerea

ncbi_submitter: Rochester Institute of Technology


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: China: Sichuan

ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: Water column

ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: Handley Lab, University of Auckland


ncbi_submitter: Agriculture & Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819;x__Campylobacter jejuni subsp. jejuni NCTC 11168-mcK12E5


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter rodentium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Olsenella sp.


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:127

ncbi_submitter: DTU


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: EMG


ncbi_organism_name: Burkholderia sp. BCC1993

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_assembly_name: Rumen uncultured genome RUG254

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Germany: Miinchen

ncbi_isolation_source: skin of chicken

ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: Zhejiang University


ncbi_country: Malaysia:Negeri Sembilan

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University Malaysia


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: SRRS

ncbi_organism_name: Sporomusa rhizae

ncbi_submitter: Georg-August-University Goettingen


ncbi_country: USA: Vidalia Region; GA

ncbi_isolation_source: Florida pusley

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: Japan

ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Meiji Co., Ltd.


ncbi_assembly_name: MAP 4404 version 1

ncbi_country: USA: Idaho

ncbi_isolation_source: milk

ncbi_submitter: National Animal Disease Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis;x__Mycobacterium avium subsp. paratuberculosis 10-4404


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0554

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Portland State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_country: Thailand: Bangkok

ncbi_isolation_source: feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Mahidol University


ncbi_country: Spain

ncbi_isolation_source: Contaminated marine soil

ncbi_organism_name: Stutzerimonas kunmingensis

ncbi_submitter: University of Balearic Islands


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Priestia flexa

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: United Kingdom: Oxford

ncbi_isolation_source: Conjunctiva

ncbi_strain_identifiers: NCTC 8325

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus NCTC 8325


ncbi_country: China

ncbi_organism_name: Rheinheimera oceanensis

ncbi_submitter: Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources


ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2681813517 annotated assembly

ncbi_organism_name: Corynebacterium appendicis CIP 107643

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: Switch grass fiber attached community in cow rumen; 72 hour post incubation

ncbi_organism_name: Lachnospiraceae bacterium UBA1258

ncbi_submitter: University of Queensland


ncbi_country: Japan: Chubu

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: DS-I Africa


ncbi_organism_name: Nonomuraea terrae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Candidatus Stercoripulliclostridium sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Stercoripulliclostridium;x__unclassified Candidatus Stercoripulliclostridium;s__Candidatus Stercoripulliclostridium sp.


ncbi_organism_name: Alloprevotella sp.

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Salmonella sp. 741265111_PSA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_organism_name: uncultured Terriglobales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_organism_name: Kitasatospora sp. NPDC092039


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Weeksellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_country: China: Liaoning province

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Candidatus Nanoperiomorbaceae bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanoperiomorbia;o__Candidatus Nanoperiomorbales;f__Candidatus Nanoperiomorbaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanoperiomorbia;o__Candidatus Nanoperiomorbales;f__Candidatus Nanoperiomorbaceae;x__unclassified Candidatus Nanoperiomorbaceae;s__Candidatus Nanoperiomorbaceae bacterium


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: Abdominal clot

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh School of Medicine


ncbi_country: India: Cochin; Kathrikkadavu; retail fish market

ncbi_isolation_source: mackerel

ncbi_submitter: Indian Council of Agricultural Research-Central Institute of Fisheries and Technology


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: China: Harbin; Northeastern China

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptococcus suis YS161

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_isolation_source: Tui Malila hydrothermal plume 10m

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: sputum

ncbi_submitter: Yangzhou University


ncbi_country: USA: Boston; MA

ncbi_submitter: Broad Institute


ncbi_country: Chile: Metropolitan Region

ncbi_isolation_source: Isolated from cerebrospinal fluid of a 36 years old male

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: CDC


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: uncultured Pseudomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Wayne State University


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Parachlamydiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Shanghai Jiao Tong Uniersity


ncbi_organism_name: Azospirillaceae bacterium


ncbi_isolation_source: boneless ham

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Terribacillus saccharophilus

ncbi_submitter: Gujarat Biotechnology Research Centre


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: PulseNet USA


ncbi_organism_name: Candidatus Thiodiazotropha endolucinida

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_submitter: National Chung Hsing University


ncbi_country: Greece

ncbi_isolation_source: Greek sourdough

ncbi_organism_name: Lactiplantibacillus argentoratensis

ncbi_submitter: GREENBREAD Project


ncbi_organism_name: Paenibacillus sp. SORGH_AS_0306

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Chuvash Republic

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_country: China: Gungdong

ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: EMG


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Thailand: Ubon; Kemarach


ncbi_country: Germany

ncbi_isolation_source: horse

ncbi_strain_identifiers: CVUAS 11726

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Guangxi province

ncbi_isolation_source: Nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Australia: Melbourne

ncbi_isolation_source: other

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology (JAMSTEC)


ncbi_organism_name: Streptococcus cristatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Christensenellales bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pikeienuella sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Flavobacteriales bacterium BRH_c54

ncbi_submitter: EPFL


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: metagenome

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Tunisia

ncbi_isolation_source: gills

ncbi_organism_name: Candidatus Thiodiazotropha lotti

ncbi_submitter: University of California, Davis


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Streptococcus agalactiae SS1219

ncbi_submitter: IP


ncbi_country: South Korea: Seoul

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: EFA 20

ncbi_submitter: Yonsei Medical Center


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-257

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: new MAG-257

ncbi_submitter: Micoorganism


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: Germany: North Rhine-Westphalia

ncbi_isolation_source: Rainbow trout

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderia cenocepacia


ncbi_organism_name: Sphingomonas qilianensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: uncultured Gracilibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_strain_identifiers: WHRI 6181

ncbi_submitter: University of Warwick


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Iowa State University


ncbi_organism_name: Bordetella avium

ncbi_strain_identifiers: SCPM-O-B-13162 (KrasSul)

ncbi_submitter: SRCAMB


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Army Medical University


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of Thessaly


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: KU Leuven


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Agricultural Research Service


ncbi_country: USA: MO

ncbi_isolation_source: stool sample of individual with bacteremia

ncbi_organism_name: Streptococcus agalactiae MC627

ncbi_submitter: The Genome Institute


ncbi_country: Italy

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: Fondazione Edmund Mach


ncbi_country: Japan

ncbi_isolation_source: human feces

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: National Institute of Advanced Industrial Science and Technology, Biomedical Research Institute


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_assembly_name: freshwater MAG --- Umea_bin-05958

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: BILS


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_country: China

ncbi_isolation_source: stool sample

ncbi_organism_name: Shigella flexneri 2000019

ncbi_submitter: Chinese Center for Disease Control and Prevention (China CDC)


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_isolate: Prospectively collected (P)

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: Prospectively collected (P)

ncbi_submitter: Erasmus University Medical Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteiniphilum sp. UBA4842

ncbi_submitter: University of Queensland


ncbi_country: Peru

ncbi_isolation_source: feces


ncbi_country: Canada: Toronto; ON

ncbi_isolation_source: puddle at Cedarvale Ravine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bard College


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_submitter: Beijing Institute of Radiation Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus salivarius


ncbi_country: USA: Brookings; South Dakota State University

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: South Dakota State University


ncbi_country: USA: Ghann s cricket farm in Georgia

ncbi_isolation_source: gut

ncbi_organism_name: Lactococcus garvieae

ncbi_submitter: Texas Tech University


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S035_10622

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut


ncbi_country: Switzerland: Zurich

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Spain

ncbi_isolation_source: Rectal swab

ncbi_submitter: HOSPITAL UNIVERSITARIO REINA SOFIA DE CORDOBA


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Vibrio sp. FF145

ncbi_submitter: University of Vienna


ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: nankai university


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Qingdao

ncbi_isolation_source: sewage water

ncbi_organism_name: Bacillus sp. 1s-1

ncbi_submitter: China University of Petroleum (East China)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 1s-1


ncbi_organism_name: Bacillus glycinifermentans

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Turkey: Mardin; Midyat

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: Idaho

ncbi_isolation_source: biofilm from indoor freshwater fish hatchery

ncbi_organism_name: Pseudomonas shahriarae

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_isolation_source: food production metagenome

ncbi_organism_name: Komagataeibacter europaeus

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_country: China: HaiKou

ncbi_organism_name: Micromonospora sp. HNM0581

ncbi_submitter: Hainan University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, College of Medicine Zhejiang University


ncbi_organism_name: Nitrospira sp.


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Behind the ears

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: Mali

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Nitrosomonas sp.

ncbi_submitter: The University Hong Kong


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Roseburia sp. CLA-AA-H209

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Kansas

ncbi_isolation_source: mucus

ncbi_submitter: USDA-ARS-USMARC


ncbi_country: South Korea: Ilsan

ncbi_isolation_source: soil

ncbi_organism_name: Aggregicoccus sp. 17bor-14

ncbi_submitter: Dongguk University, Biomedi Campus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: Denmark: Copenhagen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Copenhagen University Hospital - Rigshospitalet


ncbi_country: Germany: Kiel

ncbi_isolation_source: Rotting apple

ncbi_organism_name: Microbacterium sp. MYb45

ncbi_submitter: Zoological Institute, Kiel University


ncbi_organism_name: Specibacter sp. NPDC057265

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: France

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite Paris-Sud


ncbi_country: China: Henan

ncbi_isolation_source: feces

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_country: USA: Florida; Summerland Key

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_country: Germany: exploratory Hainich

ncbi_isolation_source: grassland soil

ncbi_organism_name: Microbacterium sp. H1-D42

ncbi_submitter: Exploratories for large-scale and long-term functional biodiversity research


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Anaerovoracaceae;x__unclassified Anaerovoracaceae Incertae Sedis;s__Eubacteriales Family XIII. Incertae Sedis bacterium


ncbi_country: Switzerland

ncbi_isolation_source: mixed salad

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nonomuraea dietziae


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of South Africa


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_organism_name: Micromonospora sp. NBRC 110037

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_assembly_name: freshwater MAG --- AlinenSedimentsD1_bin-1446

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospinota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Acinetobacter schindleri

ncbi_submitter: University Bourgogne Franche-Comte, INRAE, Institut Agro Dijon


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: uncultured Roseivirgaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Salmonella sp. LSP 54/18

ncbi_submitter: University of Oviedo


ncbi_organism_name: Pseudomonas sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: China CDC


ncbi_country: Japan: Jinata Onsen; Shikinejima

ncbi_isolation_source: iron-rich host spring Jinata Onsen Pool 3

ncbi_organism_name: Armatimonadetes bacterium JP3_11

ncbi_submitter: California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__unclassified Armatimonadota;s__Armatimonadetes bacterium JP3_11


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: KEMRI


ncbi_organism_name: Escherichia sp. Brlt_15

ncbi_submitter: Banaras Hindu University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_country: USA

ncbi_isolation_source: raw milk: raw sheep s milk

ncbi_organism_name: Listeria innocua

ncbi_submitter: Meeske Lab - University of Washington


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Nitrospiria bacterium

ncbi_submitter: Inha University


ncbi_country: China: Shandong

ncbi_isolation_source: lung

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Special Animal and Plant Sciences, The Chinese Academy of Agricultural Sciences,


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Vibrio sp. SSH13-20

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Halomonas sp. 5021

ncbi_submitter: State Key Laboratory of Microbial Technology, Marine Biotechnology Research Center


ncbi_country: Italy: Castelnovo Bariano (RO)

ncbi_isolation_source: liver

ncbi_organism_name: Clostridium botulinum C/D

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: United Kingdom: London

ncbi_isolation_source: High vaginal swab

ncbi_submitter: Nottingham Trent University


ncbi_country: USA: Dallas; Texas

ncbi_isolation_source: urine

ncbi_submitter: University of Texas at Dallas


ncbi_country: Japan

ncbi_isolation_source: drain drainage

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Toho university


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: India: West Bengal

ncbi_isolation_source: root

ncbi_organism_name: Bradyrhizobium sp. WBOS8

ncbi_submitter: University of calcutta


ncbi_organism_name: Atribacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 980

ncbi_submitter: USDA-ARS


ncbi_country: Mali: Koulikoro

ncbi_isolation_source: stool sample

ncbi_submitter: Medical Faculty, Otto-von-Guericke University Magdeburg


ncbi_organism_name: Candidatus Coprenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Rikenellaceae;x__Rikenellaceae incertae sedis;g__Candidatus Coprenecus;x__unclassified Candidatus Coprenecus;s__Candidatus Coprenecus sp.


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Azamiibacteriota;s__Candidatus Azambacteria bacterium RIFCSPHIGHO2_02_FULL_52_12


ncbi_submitter: University of Galway


ncbi_organism_name: Nocardioidaceae bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: University of Florida


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Nanjing; Jiangsu province

ncbi_isolation_source: heavy-metal-polluted farm soil

ncbi_organism_name: Pseudoduganella plicata

ncbi_submitter: University of Tuebingen


ncbi_country: Australia

ncbi_isolation_source: meat food production facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Treponema saccharophilum

ncbi_submitter: The University of Tokyo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: MD

ncbi_isolation_source: Sesame Seed

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_organism_name: uncultured Pseudomonas sp.


ncbi_country: USA: Oklahoma

ncbi_isolation_source: produced fluids from hydraulically fractured shales

ncbi_organism_name: Deferribacteraceae bacterium

ncbi_submitter: The Ohio State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Brazil: Rio de Janeiro

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FIOCRUZ


ncbi_organism_name: Bacillus pacificus

ncbi_submitter: University Hospital Muenster


ncbi_country: France

ncbi_isolation_source: stools

ncbi_organism_name: Campylobacter coli

ncbi_submitter: CHU de Bordeaux


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: BGI


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Clemson University


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Chromatiales bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Thiogranum sp.

ncbi_submitter: King Abdullah University of Science and Technology (KAUST)


ncbi_organism_name: Angelakisella sp.


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA

ncbi_isolation_source: diabetic foot ulcer sample 7

ncbi_organism_name: Corynebacterium sp. LK28

ncbi_submitter: UPenn


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: EPEC 2272

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Aliarcobacter butzleri


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus sp. PAMC28748

ncbi_submitter: Korea University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. PAMC28748


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinobacterium sp. xm-g-48

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T13126

ncbi_submitter: Broad Institute


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Candidatus Fonsibacter ubiquis

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__Candidatus Pelagibacterales incertae sedis;g__Candidatus Fonsibacter;s__Candidatus Fonsibacter ubiquis


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Shenyang Institute of Applied Ecology, Chinese Academy of Sciences


ncbi_country: Italy: Trento

ncbi_isolation_source: alpine spring water

ncbi_organism_name: Staphylococcus sp. J

ncbi_strain_identifiers: J

ncbi_submitter: University of Trento


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6400

ncbi_submitter: University of the Basque Country


ncbi_organism_name: Streptomyces griseofuscus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Minnesota

ncbi_isolation_source: activated sludge

ncbi_organism_name: Ectopseudomonas mendocina

ncbi_strain_identifiers: GU

ncbi_submitter: Hamline University


ncbi_country: China

ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Brachyspira sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Anaerotignum faecicola

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-O21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_organism_name: Pseudomonas sp. CCOS 191

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: California; The Cedars highly alkaline spring

ncbi_isolation_source: serpentinized groundwater

ncbi_organism_name: Candidatus Nealsonbacteria bacterium

ncbi_submitter: Japan Agency for Marine-Earth Science and technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nealsoniibacteriota;x__unclassified Candidatus Nealsonbacteria;s__Candidatus Nealsonbacteria bacterium


ncbi_organism_name: Desulfurivibrionaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: CENTRAL RESEARCH INSTITUTE OF FOOD AND FEED CONTROL


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Segatella copri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: stool sample

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of Southern California


ncbi_country: Ghana: Northen region

ncbi_isolation_source: nasal swab

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Noguchi Memorial Institute fir Medical Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: BC

ncbi_isolation_source: Rectal

ncbi_organism_name: Raoultella planticola

ncbi_submitter: US Food and Drug Administration


ncbi_country: Thailand: Chonburi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolate: F-Om

ncbi_organism_name: Francisella-like endosymbiont

ncbi_strain_identifiers: F-Om

ncbi_submitter: Centre National de la Recherche Scientifique (CNRS)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Caldisericaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Candidatus Wujingus californicus

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wujingus;s__Candidatus Wujingus californicus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Wujingus;s__Candidatus Wujingus californicus


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: The Second Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Blastocatellia bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_submitter: DS-I Africa


ncbi_organism_name: Candidatus Fimimorpha sp.

ncbi_submitter: Wilmar International Limited

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Fimimorpha;x__unclassified Candidatus Fimimorpha;s__Candidatus Fimimorpha sp.


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Adlercreutzia caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_submitter: Ocean University of China

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Sedimenticola;x__unclassified Sedimenticola;s__Candidatus Sedimenticola sp. (ex Thyasira tokunagai)


ncbi_country: Pakistan: Lahore

ncbi_isolation_source: Tracheal Secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Umea University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Mediterraneibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases, ANLIS Dr. Carlos G. Malbran


ncbi_country: Spain: Santander

ncbi_isolation_source: Bronchoalveolar lavage fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: Malaysia: Institute of Bioscience; Selangor

ncbi_isolation_source: cecum

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Tang lab


ncbi_organism_name: Atlantibacter hermannii


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Agromyces hippuratus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rhizobium alvei

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong

ncbi_isolation_source: duck

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IA

ncbi_isolation_source: Seed; Soybean

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: South Korea

ncbi_organism_name: Bacteroides faecium

ncbi_submitter: World Institute of Kimchi


ncbi_organism_name: Agrobacterium tumefaciens


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: France

ncbi_isolation_source: wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Institut des Sciences de la Vigne et du Vin


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenellaceae bacterium

ncbi_submitter: University of Florida


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Thermoflexus sp.

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Mycoplasma sp. CAG:956

ncbi_submitter: DTU


ncbi_isolation_source: human gut

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: University of Queensland


ncbi_country: United Kingdom: London

ncbi_isolation_source: Perineum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_country: USA

ncbi_isolation_source: urine

ncbi_submitter: CDC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Pseudomonas veronii subsp. inensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas fluorescens group;s__Pseudomonas veronii;sb__Pseudomonas veronii subsp. inensis


ncbi_country: Japan

ncbi_isolation_source: bloody diarrhea

ncbi_organism_name: Escherichia coli O111:H-

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Ulupna; NSW

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx20652

ncbi_submitter: University Hospital Regensburg


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_country: Brazil: Porto Alegre

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Pontificia Universidade Catolica do Rio Grande do Sul


ncbi_organism_name: uncultured Senegalimassilia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Germany

ncbi_isolation_source: lake sediment

ncbi_organism_name: Clostridium sp. ZBS4

ncbi_submitter: KULeuven


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bullifex porci

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Austria: Vienna

ncbi_isolation_source: rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_organism_name: Prevotella conceptionensis

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: University of Southern California


ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_country: India: Eedigana hosuru; Holenarasipura Taluk; Hassan district; Karnataka

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Brazil: Minas Gerais

ncbi_organism_name: Pseudomonas coronafaciens pv. garcae

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas coronafaciens;x__Pseudomonas coronafaciens pv. garcae


ncbi_country: USA: Oklahoma City; OK

ncbi_isolation_source: blood

ncbi_submitter: Children's Mercy Kansas City


ncbi_country: China: Hebei

ncbi_isolation_source: Mastitis Milk

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. dysgalactiae


ncbi_country: Australia: Newcastle

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Queensland


ncbi_country: India

ncbi_isolation_source: endotracheal aspirate

ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: China: Tataling River

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_assembly_name: freshwater MAG --- MJ120716A_bin-0566

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: USA

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_assembly_name: freshwater MAG --- Umea_bin-08290

ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Clostridioides difficile P68

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: Guangxi University


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Marinospirillum sp.

ncbi_submitter: Peking University Shenzhen Institute


ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. (in: high G+C Gram-positive bacteria)


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine