ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Pseudomonas sp. WPR_5_2

ncbi_submitter: DOE Joint Genome Institute


ncbi_genome_category: derived from metagenome

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_level: Contig

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Zurich


ncbi_assembly_level: Complete Genome

ncbi_country: USA: Boston MA

ncbi_isolation_source: Feces

ncbi_organism_name: Phocaeicola dorei CL03T12C01

ncbi_submitter: University of Florida


ncbi_country: Uganda

ncbi_organism_name: Mycobacterium tuberculosis UT0047

ncbi_submitter: Broad Institute


ncbi_country: Spain: Sevilla

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHU A Coruna


ncbi_country: USA

ncbi_isolation_source: pitcher plants

ncbi_organism_name: Enterobacter sp. C6

ncbi_submitter: University of Georgia


gtdb_representative: t

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: Kazakhstan: Almaty

ncbi_isolation_source: chicken meat

ncbi_organism_name: Salmonella sp. QazSL-4

ncbi_submitter: AL-FARABI KAZAKH NATIONAL UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Akershus University Hospital, University of Oslo


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Gabon

ncbi_organism_name: Bifidobacterium moukalabense

ncbi_submitter: National Institute of Genetics


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Erwinia sp. CGal63

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: School of Veterinary Medicine and Animal Science, University of Sao Paulo


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: Translational Health Science and Technology Institute (THSTI)


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Tennessee

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Queensland


ncbi_organism_name: Limosilactobacillus pontis

ncbi_submitter: Quadram Institute Bioscience


ncbi_isolation_source: Invasive

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: USDA-ARS


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_organism_name: Treponema sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Micavibrio sp. UBA1664


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cornell University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacillus pumilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Citrobacter sedlakii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Candidatus Limiplasma pullistercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limiplasma;s__Candidatus Limiplasma pullistercoris


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Victivallales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;o__Victivallales;x__environmental samples;s__uncultured Victivallales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Streptomyces sp. NPDC002467

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_country: Denmark: Skive

ncbi_isolation_source: activated sludge from Skiv_18-Q3-R9-52

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: Clostridium neonatale E20

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale E20

ncbi_submitter: universite paris cite


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: Lincoln University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_organism_name: Staphylococcus sp. KG4-1

ncbi_submitter: Chung-Ang university


ncbi_country: China

ncbi_isolation_source: brine of a salt well

ncbi_organism_name: Salinisphaera orenii YIM 95161

ncbi_submitter: The Third Institute of State Oceanic Administration (SOA)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: metal

ncbi_organism_name: Clostridium sp. UBA6653

ncbi_submitter: University of Queensland


ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Waterloo


ncbi_isolate: Burkholderiales bacterium 8X

ncbi_organism_name: Burkholderiales bacterium 8X

ncbi_strain_identifiers: Burkholderiales bacterium 8X

ncbi_submitter: Elham Karimi


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site A

ncbi_isolation_source: Beach sand

ncbi_organism_name: Woeseiaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Japan: Gumma

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Tokyo Institute of Technology


ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Coprococcus comes

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Virgibacillus oceani

ncbi_refseq_category: reference genome

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Streptomyces sp. NPDC048430

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia:Moscow Region

ncbi_organism_name: Lelliottia sp. F153

ncbi_submitter: Institute of Bioorganic Chemistry


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: sputum

ncbi_submitter: Children's Hospital Affiliated to Zhengzhou University


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Nagoya University


ncbi_country: Netherlands

ncbi_isolation_source: Symptomatic mushroom tissue

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Wageningen University & Research


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: EMG


ncbi_country: Ecuador

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium


ncbi_country: Hong Kong: Wong Wan Chau

ncbi_isolation_source: Macroalgal tissue

ncbi_organism_name: Ruegeria arenilitoris

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Makkah

ncbi_isolation_source: Tissue

ncbi_submitter: Umm Al-Qura University


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: marine water

ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola massiliensis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_country: Italy

ncbi_isolation_source: ready to eat salad

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Schwartzia sp. (in: firmicutes)

ncbi_submitter: Baqiyatallah University of Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Schwartzia;x__unclassified Schwartzia (in: firmicutes);s__Schwartzia sp. (in: firmicutes)


ncbi_isolation_source: hospital surface

ncbi_submitter: Translational Genomics Research Institute


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Rhodobacteraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: France

ncbi_isolation_source: mastitis

ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: University of Edinburgh


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Brazil

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus mutans TCI-280

ncbi_submitter: JCVI


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_organism_name: Blautia aquisgranensis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: ileum

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Quadram Institutte


ncbi_isolation_source: caecum

ncbi_organism_name: Flavonifractor sp. An9

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Exeter


ncbi_country: Ecuador: Quito

ncbi_isolation_source: Rectal swab 1

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad Central del Ecuador


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Treponema sp.

ncbi_submitter: INRA


ncbi_submitter: Ruijin Hospital


ncbi_country: United Kingdom: East Hendred; Oxon; Oxfordshire

ncbi_isolation_source: soil

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_isolate: AOP22_C1_surf _bin _12

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP22_C1_surf _bin _12

ncbi_submitter: Genoscope


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Succinivibrionaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D9_bin-0562

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Streptomyces parvulus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Agharkar Research Institute


ncbi_country: USA: International Space Station

ncbi_isolation_source: Aluminum 2

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;s__Candidatus Yonathbacteria bacterium CG_4_10_14_3_um_filter_47_65


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia producta

ncbi_submitter: University of Chicago


ncbi_organism_name: Enterocloster sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: Rice root associated bacteria

ncbi_organism_name: Paraburkholderia caribensis

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_country: China: Harbin City; Heilongjiang Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: SCAU


ncbi_organism_name: Gemmatimonadales bacterium


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Florida


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Wirthbacteria;s__Candidatus Wirthbacteria bacterium CG2_30_54_11


ncbi_country: Turkey: Izmir

ncbi_isolation_source: soil litter close to Oxalis sp.

ncbi_organism_name: Pandoraea oxalativorans

ncbi_submitter: University of Malaya


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Porphyromonas canoris

ncbi_submitter: UC Davis


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Subtercola sp. YIM 133946

ncbi_submitter: Yunnan University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolate: AOP19_E1_surf _bin _24

ncbi_organism_name: Pseudoalteromonas distincta

ncbi_strain_identifiers: AOP19_E1_surf _bin _24

ncbi_submitter: Genoscope


ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Canterbury Health Laboratories


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 111

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 578

ncbi_submitter: University of Calgary


ncbi_country: Spain

ncbi_isolation_source: evaporation pond of a saltern

ncbi_organism_name: Bacillus sp. V3B

ncbi_submitter: University of Stuttgart

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. V3B


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_submitter: EMG


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Brown_K_8

ncbi_organism_name: uncultured Mycobacterium sp.

ncbi_submitter: Universite de Sherbrooke


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Salmonella sp. 2018-SM452

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Anaerolinea sp.


ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: University of Sheffield


ncbi_organism_name: Veillonella parvula


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: AR

ncbi_isolation_source: soil

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Beijing Center for Disease Prevention and Control


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Macromonas bipunctata

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_country: Austria

ncbi_isolation_source: serosa

ncbi_organism_name: Mesomycoplasma hyorhinis

ncbi_submitter: Institute of Microbiology


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae UHKPC23

ncbi_submitter: JCVI


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC018352

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1525

ncbi_submitter: Broad Institute


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: brown biofilm from alkaline hot spring

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Universiti Teknologi Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Gallimonas merdae

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Bacillota;c__Clostridia;o__;f__;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Gallimonas;s__Candidatus Gallimonas merdae


ncbi_isolation_source: lake water

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: SpX11/RR5 Outisde cage

ncbi_organism_name: Bacillus sp. S/N-304-OC-R1

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. S/N-304-OC-R1


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Limnoglobus sp.

ncbi_submitter: EPFL


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_submitter: LNCC


ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: Wageningen University


ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_organism_name: Xanthobacter sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: EMG


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrovaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Hong Kong

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Xiamen University


ncbi_assembly_name: freshwater MAG --- Umea1p2_bin-0894

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: Uppsala University


ncbi_country: China: the Dagang high-temperature heavy oil reservoir

ncbi_isolation_source: production water

ncbi_organism_name: Geobacillus proteiniphilus

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Corynebacterium durum


ncbi_country: China: Xiapu

ncbi_isolation_source: Aquaculture pond sediment

ncbi_organism_name: Qipengyuania xiapuensis

ncbi_submitter: Guangdong Academy of Sciences


ncbi_isolate: metabat2_XCR1_HET_6734_bwa.82 MAG

ncbi_organism_name: Candidatus Desulfovibrio gallistercoris

ncbi_strain_identifiers: metabat2_XCR1_HET_6734_bwa.82 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Wilmar International Limited


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: Sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: SC


ncbi_isolation_source: seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: MN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria booriae

ncbi_submitter: Cornell University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Xylanimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Icahn School of Medicine


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Streptomyces sp. NPDC057286


ncbi_country: China: Ruilong

ncbi_organism_name: Streptomyces sp. TRM75561

ncbi_submitter: Tarim University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Tengchong; Diretiyanqu

ncbi_isolation_source: hot springs sediment

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Skin and soft tissue

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Monash University


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bifidobacterium tibiigranuli

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_assembly_name: freshwater MAG --- MJ110629B_bin-165

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Oregon State University


ncbi_country: USA

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Kiruna_bin-04091

ncbi_organism_name: uncultured Bacteroidota bacterium


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Fiocruz


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Paraprevotella clara

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Thermoanaerobaculia bacterium


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Portland State University


ncbi_country: Japan

ncbi_isolation_source: fecal samples

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Department of Statistical Genetics, Osaka University Graduate School of Medicine


ncbi_isolation_source: Distal colon


ncbi_organism_name: Clostridium beijerinckii


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Cryobacterium sp. TMT1-66-1

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Candidatus Sumerlaeia bacterium

ncbi_submitter: NanJing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;x__unclassified Candidatus Sumerlaeia;s__Candidatus Sumerlaeia bacterium


ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Pasteurella atlantica

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Mexico

ncbi_organism_name: Zymomonas mobilis

ncbi_strain_identifiers: NRRL B-4286

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Centipeda sp.


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Paenibacillus antibioticophila

ncbi_submitter: ebi


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-0303

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Desulfotignum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Veillonellaceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus villorum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_organism_name: Smaragdicoccus niigatensis

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Sinosporangium siamense

ncbi_strain_identifiers: TBRC 1279


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_assembly_name: freshwater MAG --- AM-2014_bin-3283

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: University of Lausanne


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: France: Villejuif

ncbi_isolation_source: Tumor MCA205 WT

ncbi_organism_name: Atopobiaceae bacterium FL090493

ncbi_submitter: Institut Gustave Roussy


ncbi_isolate: Listeria monocytogenes strain RO4

ncbi_organism_name: Listeria monocytogenes

ncbi_strain_identifiers: Listeria monocytogenes strain RO4

ncbi_submitter: Institute of Biotechnology, University of Helsinki


ncbi_organism_name: Aeromonas caviae


ncbi_country: India: Kerala

ncbi_isolation_source: shrimp

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Sichuan

ncbi_isolation_source: yak milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Lactococcus formosensis subsp. bovis


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Elizabethkingia anophelis PW2806

ncbi_submitter: HKU


ncbi_country: Canada: Eastern Canada

ncbi_organism_name: Staphylococcus hyicus

ncbi_submitter: Universite Laval


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_assembly_name: freshwater MAG --- A4_bin-403

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: BILS


ncbi_country: Nigeria: Kano

ncbi_isolation_source: School toilet

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Robert Koch Institute, Germany


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: TCI Co., Ltd.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Cytobacillus firmus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Hoylesella shahii

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Anhui; Wuhu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Denmark

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Statens Serum Institut


ncbi_country: Saudi Arabia: Riyadh

ncbi_submitter: University College Dublin


ncbi_country: Spain

ncbi_organism_name: Xanthomonas nasturtii

ncbi_submitter: University of Exeter


ncbi_organism_name: Campylobacter coli

ncbi_submitter: university of burgos


ncbi_country: Portugal

ncbi_isolation_source: Feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Universidade do Algarve


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: University of Washington


ncbi_country: France

ncbi_isolation_source: teat canal

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Geneva University Hospitals


ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: Grimontia hollisae

ncbi_submitter: EMG


ncbi_organism_name: Cereibacter sphaeroides WS8N

ncbi_submitter: University of Oxford


ncbi_organism_name: Bacteroides intestinalis


ncbi_country: South Korea:Seoul

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Yonsei University


ncbi_submitter: Lebanese American University-Microbial Pathogenomics Lab


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: DC

ncbi_isolation_source: Peripheral Blood

ncbi_organism_name: Roseomonas sp. FDAARGOS_362

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_country: Belgium

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Shanghai Entry-Exit Inspection and Quarantine Bureau


ncbi_country: Greenland: Little Firn glacier in the Knuths Fjeld area

ncbi_isolation_source: surface glacier

ncbi_organism_name: Tardiphaga sp. vice278

ncbi_submitter: Aarhus University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Institute of Deep-Sea Science and Engineering, Chinese Academy of Sciences


ncbi_isolation_source: laboratory

ncbi_submitter: Chr. Hansen


ncbi_isolation_source: tap of river water

ncbi_organism_name: Listeria newyorkensis

ncbi_submitter: Laboratory of food microbiology, Department of food science and technology, Tokyo university of marine science and technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: clinical

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_organism_name: Aurantimonas coralicida

ncbi_submitter: Palmer LTER


ncbi_organism_name: Prevotella aurantiaca JCM 15754

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Prevotellaceae;g__Prevotella;s__Prevotella aurantiaca;x__Prevotella aurantiaca JCM 15754


ncbi_isolation_source: feces dairy cow (Bos taurus)

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Cerro;x__Salmonella enterica subsp. enterica serovar Cerro str. CFSAN001670


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Nomada fucata


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Actinoplanes sp.


ncbi_country: China:Zhejiang Province; Hangzhou

ncbi_isolation_source: throat swab

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: hospital wastewater

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zoonosis Science Center


ncbi_country: Australia: Melbourne

ncbi_isolation_source: IV catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiphilium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_organism_name: Sphingomonas koreensis

ncbi_submitter: NHGRI/NIH


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Turkey

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Bundeswehr, Institute of Microbiology


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: PRINCIPLES OF MICROBIAL ECOSYSTEMS


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


gtdb_type_species_of_genus: t

ncbi_country: South Korea: Bucheon abattoir

ncbi_isolation_source: rumen

ncbi_organism_name: Pseudoprevotella muciniphila

ncbi_submitter: Seoul National University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadales bacterium


ncbi_isolate: metabat2_XCR1_HOM_6737_bwa.36 MAG

ncbi_organism_name: Candidatus Faecousia intestinavium

ncbi_strain_identifiers: metabat2_XCR1_HOM_6737_bwa.36 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Chloroflexia bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_organism_name: Ralstonia pseudosolanacearum


ncbi_organism_name: Streptomyces cinereoruber

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: China National Centre for Food Safety Risk Assessment


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Acuticoccus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Agrobacterium radiobacter

ncbi_submitter: National Academy of Agrarian Sciences of Ukraine


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Neisseria sp. P0004.S005

ncbi_submitter: Rochester Institute of Technology


ncbi_organism_name: Salmonella sp. ZJHZ20_0161

ncbi_submitter: Zhejiang university


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 95 m-106 m

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Prevotella sp.


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4975

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4975


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Beijing

ncbi_organism_name: Pectobacterium odoriferum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: China: Shenzhen

ncbi_organism_name: Fictibacillus halophilus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_country: Canada

ncbi_isolation_source: gut

ncbi_organism_name: Ligilactobacillus saerimneri

ncbi_submitter: University of Ottawa


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nonomuraea sp. B1E8

ncbi_submitter: Ondokuz Mayis university


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IRCCS Fondazione Policlinico San Matteo


ncbi_country: Morocco: Fes-Boulemane

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Peru

ncbi_isolation_source: Clinic

ncbi_submitter: Instituto Nacional de Salud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: CSIR-Centre for Cellular and Molecular Biology


ncbi_organism_name: uncultured Azospirillum sp.

ncbi_submitter: EMG


ncbi_country: China: Hunan

ncbi_isolation_source: wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0191

ncbi_submitter: Broad Institute


ncbi_isolation_source: Cloacal swab

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universiti Putra Malaysia


ncbi_submitter: Washington University in St Louis


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Spain: Galicia

ncbi_isolation_source: larva

ncbi_organism_name: Vibrio neptunius

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Nesterenkonia jeotgali

ncbi_submitter: DOE Joint Genome Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_isolation_source: Pig

ncbi_organism_name: Campylobacter suis

ncbi_submitter: LM-UGent


ncbi_country: France

ncbi_organism_name: Borreliella garinii

ncbi_submitter: INRAe


ncbi_country: China: Sichuan

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University


ncbi_country: Japan

ncbi_isolation_source: cat-tail; Typha latifolia

ncbi_organism_name: Actinoplanes sp. NBRC 101535

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Denmark

ncbi_submitter: University of Southampton


ncbi_isolation_source: isolated from Haemaphysalis hystricis

ncbi_organism_name: Rickettsia japonica

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: China CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Paenarthrobacter sp. YJN-5

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand

ncbi_isolation_source: bark of Buchanania latifolia Roxb.

ncbi_organism_name: Paractinoplanes ovalisporus

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Turicimonas muris

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point D

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;x__unclassified Sphingobacteriia;s__Sphingobacteriia bacterium RIFOXYD2_FULL_35_12


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: France: Besancon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Ramon y Cajal


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: poultry litter

ncbi_submitter: UNIVERSITY OF SEVILLA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_name: IMG-taxon 2634166352 annotated assembly

ncbi_organism_name: Parafrankia irregularis

ncbi_submitter: DOE - Joint Genome Institute


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kunzendorf


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Heze University


ncbi_assembly_name: Rumen uncultured genome RUG14391

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_country: Ethiopia

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_country: Indian Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas sp. S1727

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Icahn School of Medicine


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: ESCALves

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_isolation_source: caecum

ncbi_organism_name: Pseudoflavonifractor sp. An187

ncbi_submitter: Veterinary Research Institute


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Shanghai Ruijin Hospital


ncbi_country: United Kingdom

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: MN

ncbi_isolation_source: spleen

ncbi_organism_name: Francisella tularensis

ncbi_submitter: USAMRIID


ncbi_organism_name: Flavobacteriales bacterium


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Pedobacter sp. Leaf176

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Spain: Barcelona

ncbi_isolation_source: nasopharynx

ncbi_submitter: ITQB


ncbi_organism_name: Streptomyces clavifer

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lawsonibacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Kansas State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Cryptosporangium sp. NPDC051539


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Bacillus coreaensis

ncbi_submitter: Tarim University


ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: Bc Uniclon 04

ncbi_submitter: UFMG


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Xinjiang Medical University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Southwest University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Xiamen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolate: SPRUCE 52

ncbi_organism_name: Roseiarcus sp.

ncbi_strain_identifiers: SPRUCE 52

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Yunnan Academy of Tobacco Agricultural Sciences


ncbi_organism_name: uncultured Gaiellales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_submitter: University of Rhode Island

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thiodubiliella;s__Candidatus Thiodubiliella endoseptemdiera


ncbi_organism_name: Coriobacteriales bacterium


ncbi_organism_name: Candidatus Saccharicenans sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;c__Candidatus Aminicenantia;o__Candidatus Aminicenantales;f__Candidatus Saccharicenantaceae;g__Candidatus Saccharicenans;x__unclassified Candidatus Saccharicenans;s__Candidatus Saccharicenans sp.


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA: WA

ncbi_isolation_source: Tilapia

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: FDA


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate and no molasses at 250 mg/L thiocyanate

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_assembly_name: Rumen uncultured genome RUG13386

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: China: Hubei

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Philadelphia

ncbi_isolation_source: Calf Liver

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: USDA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Ningbo

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Ningbo First Hospital


ncbi_country: Thailand: Nakhon Si Thammarat

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil

ncbi_organism_name: Corynebacterium guaraldiae

ncbi_submitter: Federal University of Bahia


ncbi_country: Italy

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Winogradskyella sp.

ncbi_submitter: marine college, shandong university


ncbi_country: United Kingdom:England

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Antarctica: Signy Island

ncbi_isolation_source: soil

ncbi_organism_name: Humibacillus sp. DSM 29435

ncbi_submitter: Monash University Malaysia


ncbi_country: China: Shenzhen

ncbi_isolation_source: Throat swab 27

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Jinan University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolate: NKLJL


ncbi_country: China: Nantong; Jiangsu province

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Japan: Tarama Knoll; Okinawa Trough

ncbi_isolation_source: sponge from the Swan site of a hydrothermal vent

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: HKUST

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Germany

ncbi_isolation_source: valvular endocarditis

ncbi_organism_name: Wielerella bovis

ncbi_submitter: University of Bern


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Nocardiopsis gilva

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: liquor

ncbi_submitter: SRCAMB


ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Algeria: Medea

ncbi_isolation_source: lymph nodes

ncbi_organism_name: Pseudochrobactrum algeriensis

ncbi_submitter: INRAE - Institut national de recherche pour l'agriculture, l'alimentation et l'environnement


ncbi_country: Japan

ncbi_organism_name: Parabacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_strain_identifiers: UPMP 2096

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Jannaschia sp.

ncbi_submitter: marine college, shandong university


ncbi_country: India

ncbi_organism_name: Prevotella sp.


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Hydrogenedens sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy: d__Bacteria;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;c__Candidatus Hydrogenedentia;o__Candidatus Hydrogenedentales;f__Candidatus Hydrogenedentaceae;g__Candidatus Hydrogenedens;x__environmental samples;s__uncultured Candidatus Hydrogenedens sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kocuria carniphila

ncbi_submitter: Moscow State University


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Bacteroides sp. AF35-22

ncbi_submitter: BGI


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_assembly_name: freshwater MAG --- MJ110629B_bin-688

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_country: Nigeria

ncbi_isolation_source: brown beach

ncbi_submitter: Shandong University at Weihai

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Saprospiria;o__Saprospirales;f__Lewinellaceae;g__Flavilitoribacter;s__Flavilitoribacter nigricans;x__Flavilitoribacter nigricans DSM 23189 = NBRC 102662


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Achromobacter pestifer

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Myxococcus stipitatus DSM 14675

ncbi_submitter: Max Planck Institute for Terrrestrial Microbiology

ncbi_type_material_designation: assembly designated as neotype


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: NIH/NIAID


ncbi_organism_name: Nonomuraea sp. NPDC005701

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas putida S16

ncbi_submitter: Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas putida group;s__Pseudomonas putida;x__Pseudomonas putida S16


ncbi_isolation_source: deep-sea sponge Neamphius huxleyi

ncbi_organism_name: Sphingopyxis sp. UBA6734

ncbi_submitter: University of Queensland


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 313

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 1388

ncbi_submitter: University of Calgary


ncbi_country: Sri Lanka

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Pyrogenes;x__Leptospira interrogans serovar Pyrogenes str. R168


ncbi_country: Germany: Leibniz

ncbi_isolation_source: soft rot

ncbi_organism_name: Pectobacterium versatile

ncbi_submitter: Hebei University of Science and Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; solid retention time of 6 days

ncbi_organism_name: Lacticaseibacillus rhamnosus


ncbi_country: China: Xisha

ncbi_isolation_source: marine sponge

ncbi_organism_name: Rhodococcus spongiicola

ncbi_submitter: Ren Ji Hospital School of Medicine, Shanghai Jiao Tong University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_organism_name: Porphyromonadaceae bacterium UBA7167

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces tritici

ncbi_submitter: Hunan University of Arts and Science


ncbi_country: China: Yangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: the Affiliated Hospital of Yangzhou University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Zhejiang;Hangzhou

ncbi_isolation_source: Tea garden soil

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Zhejiang sci-tech university


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: bioMerieux


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_isolation_source: vegetable

ncbi_organism_name: Microbacterium sp. OVT16B

ncbi_submitter: Wayne State University


ncbi_organism_name: Arcanobacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Zoonosis Science Center


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: United Kingdom: Leicester

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: University of Leicester


ncbi_country: Colombia: Bogota

ncbi_submitter: International Center for Microbial Genomics - Universidad El Bosque


ncbi_country: Mexico

ncbi_isolation_source: Lerma River

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Tecnologico de Monterrey


ncbi_isolation_source: river water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Limosilactobacillus vaginalis

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Wuhan Polytechnic University


ncbi_organism_name: Streptomyces sp. NPDC058737

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Faucicola atlantae

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_organism_name: Shewanella basaltis

ncbi_submitter: Chonnam national university


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Antwerp


ncbi_organism_name: Sedimenticolaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Runrun Shaw Hospital


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: Chiang Mai University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The British University in Egypt


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Phascolarctobacterium faecium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Micavibrio sp.


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alistipes finegoldii


ncbi_country: Canada:British Columbia

ncbi_isolation_source: food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: South Africa

ncbi_isolation_source: agama dropings

ncbi_organism_name: Salmonella enterica

ncbi_submitter: UKZN


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: INRA


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_assembly_name: freshwater MAG --- VK3_bin-1527

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: South Africa: Ethekwini district; KwaZulu-Natal

ncbi_isolation_source: ICU - dripstand

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: healthy breast milk

ncbi_organism_name: Lactobacillus gasseri CECT 5714

ncbi_strain_identifiers: CECT 5714


ncbi_organism_name: Pseudoxanthomonas sp.


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus mulieris

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Plum Island; MA

ncbi_isolation_source: Filtered seawater (64 uM filter)

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Station Biologique Roscoff (CNRS/UMPC)


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: India: Kolkata

ncbi_isolation_source: Pus

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: EMG


ncbi_country: Mexico: Uruapan

ncbi_isolation_source: Zea mays rhizosphere

ncbi_organism_name: Arthrobacter agilis

ncbi_submitter: Universidad Michoacana de San Nicolas de Hidalgo


ncbi_organism_name: Mediterraneibacter faecis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Brevundimonas sp.


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Eggerthellaceae bacterium


ncbi_country: USA: Tift Co.; GA

ncbi_isolation_source: thrips infected peanut leaf

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Legionella quinlivanii

ncbi_submitter: SC


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Polynucleobacter sp. AP-Nickl1-40-C4

ncbi_submitter: University of Innsbruck


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: cecum

ncbi_organism_name: Victivallis vadensis

ncbi_submitter: Quadram Institutte


ncbi_submitter: City University of Hong Kong


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Erwinia aphidicola

ncbi_submitter: Collaborative Crop Resilience Program


ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: IMG-taxon 2623620517 annotated assembly

ncbi_organism_name: Selenomonas ruminantium

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Phototrophicaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerobutyricum hallii


ncbi_country: Brazil: Rio Verde

ncbi_isolation_source: Bulk soil

ncbi_organism_name: Amnibacterium sp. CER49

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: La Trobe University


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa Swab

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: USA: Kalamazoo County; MI

ncbi_isolation_source: Wintergreen Lake

ncbi_organism_name: Microcystis aeruginosa W13-18

ncbi_submitter: University of Michigan


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_organism_name: Arcticibacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Canada: Manitoba

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: University of Toronto


ncbi_country: Thailand: Ubon

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: China Agricultural University


ncbi_submitter: Helmholtz Centre for Infection Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Radboud University


ncbi_organism_name: Priestia megaterium

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Italy: Rome

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Rome "La Sapienza"


ncbi_assembly_name: freshwater MAG --- Loc080925-8m_bin-953

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_organism_name: Limosilactobacillus oris

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus PLAC6024

ncbi_submitter: Broad Institute


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Aalborg University


ncbi_country: USA

ncbi_isolation_source: NEUS_D1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Italy: Sardinia

ncbi_isolation_source: milk from clinical mastitis-infected mammaries

ncbi_organism_name: Streptococcus ruminantium

ncbi_submitter: Monash University


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_country: Belgium

ncbi_isolation_source: NPS

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: India: NewDelhi

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Calgary


ncbi_country: USA: Arlington; WI

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Pseudomonas koreensis

ncbi_submitter: Yale University


ncbi_isolation_source: Midui Glacier

ncbi_organism_name: Sphingomonas psychrolutea

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Paramount; CA

ncbi_isolation_source: conjunctivitis

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Harvard Medical School / Massachusetts Eye and Ear Infirmary


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Canada: Ontario

ncbi_isolation_source: Food

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. SA20094383


ncbi_country: Canada: British Columbia

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: EMG


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Icahn School of Medicine


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: hydrothermal plume

ncbi_organism_name: bacterium

ncbi_submitter: Harvard University


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus hominis

ncbi_strain_identifiers: acrme

ncbi_submitter: NHGRI/NIH


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiales bacterium DTU083

ncbi_submitter: Technical University of Denmark


ncbi_submitter: University of Houston


ncbi_country: USA: Monterey; California

ncbi_isolation_source: pig feces

ncbi_organism_name: Escherichia coli O91 str. RM7190

ncbi_submitter: USDA-ARS-WRRC-PSM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O91;x__Escherichia coli O91 str. RM7190


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Opitutus sp. GAS368

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Neisseria sp. CCUG12390

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Breda


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rhodococcus erythropolis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacillus luti

ncbi_strain_identifiers: TIAC 5045

ncbi_submitter: Ghent University


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Sphingomonas sp. R86521

ncbi_submitter: Universiteit Gent


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Christensenellales bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces mirabilis


ncbi_organism_name: Clostridium sulfidigenes


ncbi_isolation_source: nasal swab

ncbi_submitter: Huazhong Agricultural University