ncbi_country: Germany: Freising

ncbi_isolation_source: modified-atmosphere packaged minced beef

ncbi_organism_name: Pseudomonas sp. TMW22080


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: lake water

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_level: Scaffold

ncbi_organism_name: Syntrophorhabdaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University College Dublin


ncbi_country: Argentina

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


gtdb_representative: t

ncbi_country: China: Guangzhou

ncbi_isolation_source: forest soil

ncbi_organism_name: Paraburkholderia flagellata

ncbi_refseq_category: reference genome

ncbi_submitter: Sun Yat-sen University

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: Italy

ncbi_submitter: University of Bologna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Colombia: Tuquerres

ncbi_isolation_source: gastric antrum biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Geobacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: University of Chicago


ncbi_country: USA

ncbi_organism_name: Odoribacter splanchnicus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Brazil

ncbi_isolation_source: vascular catheter tip

ncbi_organism_name: Enterococcus faecium E1679

ncbi_submitter: Dept. of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands


ncbi_country: Bulgaria

ncbi_isolation_source: Burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_assembly_level: Complete Genome

ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_submitter: Fudan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad de Chile


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Eubacterium sp. CAG:192

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. CAG:192


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California

ncbi_isolation_source: Advanced Water Purification Facility

ncbi_organism_name: Nevskiaceae bacterium

ncbi_submitter: Colorado School of Mines


ncbi_country: USA: Utah

ncbi_isolation_source: tissue

ncbi_submitter: Dugway Proving Ground

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. tularensis;x__Francisella tularensis subsp. tularensis 70001275


ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: not known

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Psychrobacter pasteurii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: INRA


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_organism_name: Propionibacteriaceae bacterium G1746

ncbi_submitter: Shanxi Medical University


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Chromosome

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces violascens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-1066

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: surface seafloor hadal sediment

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: ocean university of china


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of California at Davis


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevibacterium casei

ncbi_submitter: University of Queensland


ncbi_country: Viet Nam

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_country: Philippines

ncbi_isolation_source: rice leaf

ncbi_organism_name: Xanthomonas oryzae

ncbi_submitter: Institute of crop sciences, Chinese academy of agricultural sciences


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Georgenia sp. EYE_87

ncbi_submitter: China CDC


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Ningxia

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agriculture University


ncbi_country: Nepal: Hetauda

ncbi_isolation_source: Wild animal

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_submitter: Sun Yat-sen University


ncbi_country: China: Xiamen; Fujian

ncbi_isolation_source: liver

ncbi_organism_name: Aeromonas sobria

ncbi_submitter: Fisheries Research Institute of Fujian Province


ncbi_country: France

ncbi_isolation_source: plant root nodules

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: Medicago Hapmap Project


ncbi_assembly_name: Rumen uncultured genome RUG12667

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Rectinema sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_isolation_source: sludge

ncbi_organism_name: Priestia megaterium

ncbi_submitter: Shenzhen University


ncbi_isolation_source: diseased strawberry

ncbi_organism_name: Xanthomonas fragariae

ncbi_submitter: Zurich University of Applied Sciences (ZHAW), School of Life Sciences and Facility Management, Institute of Natural Resource Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter rodentium


ncbi_assembly_name: Rumen uncultured genome RUG10266

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Brachyspira aalborgi


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter ursingii

ncbi_submitter: Toho University


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Mystery Bay

ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Viet Nam: Hai Phong

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: China: inner Mongolian

ncbi_isolation_source: culture medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0323

ncbi_submitter: Broad Institute


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: South Africa: Darling

ncbi_isolation_source: Plant

ncbi_organism_name: Paraburkholderia rhynchosiae

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Actinomadura verrucosospora

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: WA

ncbi_organism_name: Corynebacterium propinquum

ncbi_submitter: University of Washington


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Shenzhen People's Hospital


ncbi_organism_name: Pontibacter ummariensis

ncbi_submitter: DOE Joint Genome Institute


gtdb_type_species_of_genus: t

ncbi_organism_name: Petrocella atlantisensis

ncbi_submitter: MIO


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_country: USA: California

ncbi_organism_name: Arthrobacter sp. SLBN-83


ncbi_country: China: Hunan

ncbi_organism_name: Pseudomonas kurunegalensis

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shanxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: Brazil: Salvador

ncbi_strain_identifiers: Fiocruz LV2832

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira interrogans;x__Leptospira interrogans serovar Copenhageni;x__Leptospira interrogans serovar Copenhageni str. Fiocruz LV2832


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CSUF


ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Hoengseong-gun; Gangwon-do

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus peoriae

ncbi_submitter: KRIBB


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA

ncbi_organism_name: Desulfomicrobium escambiense DSM 10707


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Atlantic Ocean: Norwegian Sea; Faavne vent field NE area of North Tower vent

ncbi_isolation_source: biosyringe of microbial iron mat on a black smoker

ncbi_organism_name: Ardenticatenia bacterium

ncbi_submitter: University of Bergen


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Campylobacter jejuni g113

ncbi_submitter: China Agriculture University


ncbi_country: Norway: Aas

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apis

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Pseudobdellovibrionaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Streptosporangiaceae bacterium


ncbi_organism_name: Klebsiella sp. R28

ncbi_submitter: Xiangya Hospital, Central South University


ncbi_country: United Kingdom

ncbi_organism_name: Shinella sp. GWS1

ncbi_submitter: University of Exeter


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: addis ababa university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: USA: Michigan

ncbi_organism_name: Rhizobium sp. PvP099

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterocloster clostridioformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: The University of Auckland


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Lentzea sp. NPDC058436

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Manitoba


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Streptomyces sp. NPDC015242


ncbi_organism_name: Paraburkholderia sediminicola

ncbi_submitter: University of Illinois at Chicago


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: Alberta

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_country: USA:California; San Francisco Zoo

ncbi_organism_name: Lonepinella koalarum

ncbi_submitter: University of California Davis


ncbi_isolation_source: feces

ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: sheep gut metagenome


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD16568

ncbi_submitter: Broad Institute


ncbi_country: China: Sichuan; Chengdu

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: West China Hospital, Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Antioquia


ncbi_country: South Korea: Boseong on the southern coast

ncbi_isolation_source: tidal flat sediment

ncbi_organism_name: Aestuariivita boseongensis

ncbi_submitter: Third Institute of Oceanography


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Kenya

ncbi_organism_name: Verrucomicrobia bacterium UBA6404

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA6404


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Japan

ncbi_isolation_source: lagoon sediments

ncbi_organism_name: Massilia eburnea

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Rikenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nocardia beijingensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_country: China: Sichuan

ncbi_isolation_source: pit mud of Chinese baijiu

ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: Sichuan University of Science and Engineering


ncbi_country: USA: PA

ncbi_isolation_source: feline cat feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: PulseNet USA


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_country: China: Guangdong;Guangzhou

ncbi_isolation_source: Venous Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: GUANGZHOU CDC,China


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Denitrificimonas caeni

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: Colorado

ncbi_isolation_source: Produced fluids from hydraulically fractured shales

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: The Ohio State University


ncbi_country: USA

ncbi_isolation_source: enrichment culture inoculated with black band disease microbial mat

ncbi_organism_name: Flammeovirgaceae bacterium BBD 1991-12

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Flammeovirgaceae;x__unclassified Flammeovirgaceae;s__Flammeovirgaceae bacterium BBD 1991-12


ncbi_country: USA:Durham; North Carolina

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Duke University


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Marinovum sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Russia: Buryats

ncbi_isolation_source: dairy product

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BY9-3LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BY9-3LC


ncbi_country: USA: Michigan

ncbi_isolation_source: municipal water sourced from an aquifer

ncbi_organism_name: Legionella taurinensis

ncbi_submitter: Virginia Tech


ncbi_organism_name: Alistipes communis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China

ncbi_organism_name: Lactiplantibacillus plantarum


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Methylocystaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Flavobacterium ammoniigenes

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Inha University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: University of Washington


ncbi_country: China: Guang Dong

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-246

ncbi_submitter: Broad Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: China: Huibei

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_organism_name: Bacteriovoracaceae bacterium UBA5945

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Kwazulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: NTPn 29

ncbi_submitter: National Institute for Communicable Diseases


ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Technical University of Denmark


ncbi_submitter: South China Agriculture University


ncbi_country: Mexico: Yucatan

ncbi_submitter: CINVESTAV-IPN


ncbi_country: USA

ncbi_isolation_source: fasciotomy fluid

ncbi_submitter: JCVI


ncbi_submitter: Jeonbuk National University


ncbi_isolation_source: NEUS_C leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: University of Florida

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Luteolibacter sp.

ncbi_submitter: University of Calgary


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Brevibacillus sp. BC25

ncbi_submitter: Oak Ridge National Lab


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_country: China: Fuyang; Anhui

ncbi_organism_name: Escherichia coli

ncbi_submitter: Center for Disease Control and Prevention of PLA


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Candidatus Palauibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;c__Gemmatimonadia;o__Candidatus Palauibacterales;f__Candidatus Palauibacteraceae;g__Candidatus Palauibacter;x__unclassified Candidatus Palauibacter;s__Candidatus Palauibacter sp.


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Germany: Augsburg

ncbi_isolation_source: Skin swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Helmholtz Center Munich


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_country: Chile: Maipo

ncbi_isolation_source: Chilean wine process

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Universidad de Chile


ncbi_country: United Kingdom: London

ncbi_isolation_source: Groin

ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: Washington

ncbi_isolation_source: elbow debris tissue

ncbi_organism_name: Cutibacterium acnes 19B1

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacterales bacterium

ncbi_submitter: Portland State University


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 479

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: Pacific Ocean

ncbi_isolation_source: water

ncbi_organism_name: Prochlorococcus marinus str. MIT 0915

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Prochlorococcaceae;g__Prochlorococcus;s__Prochlorococcus marinus;x__Prochlorococcus marinus str. MIT 0915


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: J. Craig Venter Institute


ncbi_country: China: Shandong

ncbi_isolation_source: fecal sample

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_country: France

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: Institute for integrative biology of the cell


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Calgary


ncbi_country: Mexico

ncbi_isolation_source: Nodule

ncbi_organism_name: Cupriavidus consociatus

ncbi_submitter: Instituto Politecnico Nacional


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: USA: Missouri

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: UNIVERSITY OF ARKANSAS


ncbi_country: USA: Chicago

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Chicago


ncbi_organism_name: Escherichia coli

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: hydrocarbon

ncbi_organism_name: Tissierellales bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Anaerobutyricum hallii


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universite de Limoges


ncbi_organism_name: Parablastomonas sp. CN1-191

ncbi_submitter: Kyonggi university


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Anaerovibrio slackiae


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 15m depth

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Tehran


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: Water column in the Pearl River Estuary

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: East Carolina University


ncbi_country: Israel

ncbi_isolation_source: rectal

ncbi_submitter: tel-aviv sourasky medical center


ncbi_country: China: SiChuan

ncbi_isolation_source: pig farm

ncbi_organism_name: Streptococcus hyovaginalis

ncbi_submitter: China Agriculture University


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Polyangiaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: MRSN BI Team


ncbi_country: Australia: Boho South; VIC

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool sample

ncbi_organism_name: Collinsella sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Afghanistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_assembly_name: freshwater MAG --- Umea3p3_bin-0316

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: India: Arunachal Pradesh

ncbi_isolation_source: sputum

ncbi_submitter: All India Institute Of Medical Science Bhopal


ncbi_country: Germany

ncbi_isolation_source: Daphnia magna breeding

ncbi_organism_name: Limnohabitans sp. DM1

ncbi_submitter: Biology Centre of CAS


ncbi_country: France: Marseille

ncbi_organism_name: Faecalicatena sp. Marseille-Q4148

ncbi_submitter: Institut hospitalo-universitaire en maladies infectieuses de Marseille


ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: EMG


ncbi_country: China: Sanmen

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Usitatibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridium ihumii AP5

ncbi_submitter: ebi


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Iowa State University


ncbi_assembly_name: Rumen uncultured genome RUG195

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Texas; Uvalde

ncbi_isolation_source: bulb

ncbi_organism_name: Pantoea allii

ncbi_submitter: Texas A & M University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy: Roma

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_country: Canada: Calgary

ncbi_isolation_source: blood culture

ncbi_organism_name: Microbacterium laevaniformans

ncbi_submitter: Public Health Agency of Canada


ncbi_country: Ireland

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University College Cork


ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_country: Ireland: Johnstown Castle; Wexford

ncbi_isolation_source: Background Grass (no manure on field)

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: G2 BM SC CEF 6

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: USA

ncbi_isolation_source: stool sample from patient with cholera

ncbi_organism_name: Vibrio cholerae O1 str. 2009V-1116

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. 2009V-1116


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Thailand: Uttaradit

ncbi_isolation_source: food

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_country: USA: TX

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_submitter: FDA


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 153


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Ruminococcus sp. CAG:108

ncbi_submitter: DTU


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: sweet acidophilus milk

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: Food Industry Research and Development Institute


ncbi_country: Thailand: Tan Island; Hat Khanom-Mu Ko Thale Tai National Park; Nakhon-Si- Thammarat

ncbi_isolation_source: Plant

ncbi_organism_name: Neokomagataea tanensis

ncbi_submitter: University of Malaya


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Georgia

ncbi_isolation_source: Poultry Processing Plant

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Agriculture and Food Development Authority


ncbi_assembly_name: IMG-taxon 2619618957 annotated assembly

ncbi_organism_name: Thermoactinomyces sp. DSM 45891

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCPF17_015

ncbi_submitter: University of California, Irvine


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Microcoleus sp. SM1_3_4

ncbi_submitter: University of Wisconsin, Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Beijing

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_country: India: Sambhar; Jaipur

ncbi_isolation_source: water sample from Sambhar lake

ncbi_organism_name: Alkalilimnicola ehrlichii

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_country: South Korea

ncbi_organism_name: Nocardia seriolae

ncbi_submitter: National Institute of Fisheries Science


ncbi_submitter: SC


ncbi_organism_name: Sphingobacteriia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Rodentibacter ratti

ncbi_submitter: University of Copenhagen


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Parvimonas micra


ncbi_country: Italy

ncbi_isolation_source: sushi

ncbi_submitter: FDA


ncbi_country: USA: Anadarko; OK

ncbi_isolation_source: freshwater spring sediment

ncbi_submitter: Oklahoma State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Krumholzibacteriota;c__Candidatus Krumholzibacteriia;o__Candidatus Krumholzibacteriales;f__Candidatus Krumholzibacteriaceae;g__Candidatus Krumholzibacterium;s__Candidatus Krumholzibacterium zodletonense


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Nanjing

ncbi_isolation_source: urethral discharge

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rickettsia asiatica

ncbi_submitter: Laboratory of Parasitology, Faculty of Veterinary Medicine Graduate, School of Infectious Diseases, Hokkaido University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Staphylococcus pseudoxylosus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: bacterium UBP9_UBA1432

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__unclassified Bacteria candidate phyla;s__bacterium UBP9_UBA1432


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D8_bin-591

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_organism_name: Actinotignum sp. GS-2025b

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Centers for Disease Control and Prevention - Zoonoses and Select Agent Laboratory


ncbi_organism_name: uncultured Merdibacter sp.


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Brazilian Center for Research in Energy and Materials CNPEM


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_isolation_source: Korean fermented food

ncbi_organism_name: Staphylococcus nepalensis

ncbi_submitter: Korea Food Research Institute


ncbi_organism_name: Streptomyces sp. NPDC051597

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Minnesota


ncbi_isolate: HNFNEBIM

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: HNFNEBIM

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Svalbard

ncbi_isolation_source: surface water

ncbi_organism_name: Pseudomonas psychrophila

ncbi_strain_identifiers: RGCB 166

ncbi_submitter: RAJIV GANDHI CENTRE FOR BIOTECHNOLOGY


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: high severity burned soil

ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Colorado State University


ncbi_country: Australia: Canning River; Perth

ncbi_isolation_source: freshwater

ncbi_organism_name: Microcystis aeruginosa CS-552/01

ncbi_submitter: Commonwealth Scientific and Industrial Research Organisation


ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Chloroflexia bacterium


ncbi_organism_name: Streptomyces parvus


ncbi_organism_name: Micromonospora arida

ncbi_submitter: University of Liege


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Sichuan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Pseudothermotoga sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolation_source: LDPE

ncbi_organism_name: Bacillus safensis

ncbi_submitter: Korea Institute of Fusion Energy


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: USA: Massachusetts; Boston

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Broad Institute


ncbi_assembly_name: gdodcwi04 v01

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii MRSN 4106

ncbi_strain_identifiers: MRSN 4106

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii MRSN 4106


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: blood culture

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: CONICET-CEMIC


ncbi_country: Russia: Kirov

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: 500th passage of C600T strain containing plasmid IncX3; with 2 g/L imipenem

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: Australia

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Statens Serum Institut


ncbi_country: Denmark

ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Grønt Udviklings- og Demonstrationsprogram (GUDP)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Pontibacillus;s__Pontibacillus halophilus;x__Pontibacillus halophilus JSM 076056 = DSM 19796


ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium CG_4_9_14_0_2_um_filter_41_9


ncbi_country: Bulgaria

ncbi_isolation_source: Environment

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Pelagibacteraceae bacterium AG-447-N21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: NATIONAL INSTITUTES OF HEALTH


ncbi_country: Canada

ncbi_isolation_source: well water

ncbi_organism_name: Enterococcus quebecensis

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Mannheimia indoligenes

ncbi_submitter: University of Copenhagen


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: dianzhenduan


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: feces

ncbi_organism_name: Shigella sp. FC6481

ncbi_submitter: Ministry of Science and Technology of China


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Longimicrobiaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Bacteroidales bacterium UBA4269

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA4269


ncbi_country: United Kingdom

ncbi_organism_name: Escherichia coli

ncbi_submitter: Swansea University


ncbi_country: Canada: Alberta

ncbi_submitter: Agriculture & Agri-Food Canada


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Iran

ncbi_isolation_source: chicken

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Faecalibaculum rodentium


ncbi_isolation_source: burned soil

ncbi_organism_name: Enterovirga sp.


ncbi_organism_name: Streptococcus pneumoniae 70585

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: France: Durance River

ncbi_isolation_source: fresh river water

ncbi_organism_name: Pectobacterium atrosepticum

ncbi_submitter: Sorbonne University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Limosilactobacillus reuteri subsp. suis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Taiwan: Taipei

ncbi_isolation_source: Feces of infant

ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_strain_identifiers: NTU 101

ncbi_submitter: National Taitung University


ncbi_isolation_source: Clinical; chronic granulomatous disease - blood

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_assembly_name: Rumen uncultured genome RUG12235

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Ireland

ncbi_isolation_source: Food and food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National University of Ireland, Galway


ncbi_country: Sweden

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Florida


ncbi_country: China: Anhui

ncbi_isolation_source: chicken meat

ncbi_submitter: Yangzhou University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Indiana


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: clinical

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Stockholm University


ncbi_country: Hong Kong

ncbi_isolation_source: sediment

ncbi_organism_name: Escherichia sp. E1130

ncbi_submitter: The Hong Kong University of Science and Technology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of KwaZulu Natal


ncbi_country: Viet Nam

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_country: Finland

ncbi_isolation_source: carcass

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: University of Helsinki


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_assembly_name: freshwater MAG --- MJ110516A_bin-317

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H88188

ncbi_submitter: Broad Institute


ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_country: United Kingdom

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Research Center of Avian Diseases, RCAD


ncbi_country: Canada: Montreal

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: community garden soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Dundee Data Analysis Group


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: body fluid

ncbi_submitter: FDA


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: India: Tamil Nadu

ncbi_organism_name: Prevotella sp.

ncbi_submitter: SAHMRI


ncbi_organism_name: Candidatus Doudnabacteria bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Doudnaibacteriota;x__unclassified Candidatus Doudnabacteria;s__Candidatus Doudnabacteria bacterium


ncbi_country: USA: Baltimore

ncbi_isolation_source: hospital; patient

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Providencia pseudovermicola

ncbi_submitter: October University for Modern Sciences and Arts


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_country: India

ncbi_isolation_source: raw shrimp

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: Namibia: Namib Desert

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. NamB2

ncbi_submitter: AUT University


ncbi_country: India: Haryana; Gurugram Civil Hospital

ncbi_isolation_source: high vaginal swab

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Interdisciplinary Group for Advanced Research on Birth Outcomes – A DBT India Initiative (GARBH-Ini)


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Environmental; Lupine shoot endophyte

ncbi_organism_name: Burkholderia sp. BCC1208

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Niabella sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Sichuang

ncbi_isolation_source: aquarium water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Cleveland; OH

ncbi_organism_name: Helicobacter pylori Hp P-62

ncbi_strain_identifiers: Hp P-62

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_country: Ireland

ncbi_isolation_source: Spinach

ncbi_submitter: National Salmonella, Shigella & Listeria Reference Laboratory


ncbi_organism_name: Candidatus Scatavimonas sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;x__Oscillospiraceae incertae sedis;g__Candidatus Scatavimonas;x__unclassified Candidatus Scatavimonas;s__Candidatus Scatavimonas sp.


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: University of Alberta


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: uncultured Nostoc sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Leptospira sp. 'Mane'

ncbi_strain_identifiers: Mane

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Candidatus Cryptobacteroides sp.

ncbi_submitter: University of British Columbia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;x__unclassified Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides sp.


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bifidobacterium bifidum


ncbi_organism_name: Rhizobium johnstonii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Central University of Technology


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Yersinia proxima

ncbi_submitter: University of Zurich


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_country: Atlantic Ocean: South Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: bacterium

ncbi_submitter: University of Southern California


ncbi_country: USA: Massachusetts

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Chlamydiia bacterium

ncbi_submitter: The University Hong Kong


ncbi_country: Malaysia

ncbi_isolation_source: closed biodigester

ncbi_organism_name: Bacillales bacterium UBA1361

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Municipal Pensacola Beach; FL

ncbi_isolation_source: beach sand

ncbi_organism_name: Gammaproteobacteria bacterium UBA5338


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: jejunum

ncbi_organism_name: Corynebacterium pollutisoli

ncbi_submitter: Quadram Institutte


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Buehl; Compost heap

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. NBC_00347

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Zhongshania sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human gut

ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: India: Madhya Pradesh; Sehore; Mographool

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Azospirillum sp.


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Poland: Suwalki

ncbi_isolation_source: BAL

ncbi_organism_name: Streptococcus sp. 4155

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Florida

ncbi_isolation_source: coyote feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_submitter: Quadram Institute Bioscience

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Hyphomonas sp. UBA5091

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Veillonella parvula


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Mauritius

ncbi_isolation_source: clumps of grass along paths from an agricultural experimentation station.

ncbi_organism_name: Xanthomonas sp. MUS 060

ncbi_strain_identifiers: MUS 060

ncbi_submitter: CIRAD


ncbi_isolation_source: rat gut

ncbi_organism_name: Micrococcaceae bacterium UBA7136


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Fusobacterium sp.


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: lake water

ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Taiwan

ncbi_isolation_source: reef-building coral Isopora palifera in Kenting

ncbi_organism_name: Pseudoteredinibacter isoporae

ncbi_submitter: Xiamen University


ncbi_country: South Africa

ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: UPMP 2046

ncbi_submitter: University of Pretoria


ncbi_country: Costa Rica

ncbi_organism_name: Candidatus Pantoea edessiphila

ncbi_strain_identifiers: SoEL

ncbi_submitter: Ohio State University


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_country: China: Ningxia

ncbi_isolation_source: anal swab

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Chicago


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: Marine mammal

ncbi_organism_name: Campylobacter insulaenigrae NCTC 12927

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: China

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Denmark: Region of Southern Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. oralis

ncbi_submitter: Slagelse Hospital


ncbi_organism_name: Paenibacillaceae bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_assembly_name: Rumen uncultured genome RUG11828

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Tang lab


ncbi_country: Chile: Talcahuano

ncbi_isolation_source: Pulmonary secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universidad de Concepcion


ncbi_country: Italy

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_submitter: University of Zurich


ncbi_country: Malaysia: Negeri Sembilan

ncbi_genome_representation: partial

ncbi_isolation_source: health care facilities

ncbi_organism_name: Pseudomonas sp. CW003PS

ncbi_submitter: Universiti Malaysia Pahang


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Bacillus safensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: PARUL UNIVERSITY


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: United Kingdom: Cambridge

ncbi_strain_identifiers: SynA

ncbi_submitter: MRC Laboratory of Molecular Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MDS42


ncbi_submitter: Pennsylvania State University


ncbi_organism_name: Bartonella rattimassiliensis 15908

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus tropicus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: Idaho

ncbi_isolation_source: biofilm from indoor freshwater fish hatchery

ncbi_organism_name: Pseudomonas sp. TNT2022 ID642

ncbi_submitter: University of Connecticut Graf Lab


ncbi_organism_name: Bordetella holmesii 04P3421

ncbi_submitter: JCVI


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: China Agricultural University


ncbi_country: USA: New York City

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: groundwater

ncbi_organism_name: candidate division WWE3 bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WWE3;s__candidate division WWE3 bacterium


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Blastomonas natatoria

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Desulfolunaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Japan

ncbi_submitter: Toho University


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: clinical sample from patient with gastroenteritis

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Health Canada


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Universite de Montreal


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Corynebacterium sp. NPDC060344

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Thailand

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Osaka University


ncbi_organism_name: Campylobacter sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: marine

ncbi_organism_name: Nitrospina sp.


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: Croatia: Zagreb

ncbi_isolation_source: environmental isolate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Institute for Molecular Genetics and Genetic Engineering


ncbi_isolate: C3 bin20

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: C3 bin20

ncbi_submitter: China Agricultural University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Rhode Island


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA5300

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA5300


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolate: AOP7_D1_surf _bin _5

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP7_D1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces bacillaris


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Antwerp


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa PAO1

ncbi_submitter: Basel university


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Kenya: Kakamega

ncbi_isolation_source: P5 gut compartment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Marinobacter koreensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Faecalimonas umbilicata

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Shenzhen people's hospital


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Viet Nam: Vung Tau

ncbi_isolation_source: gills

ncbi_organism_name: Nocardia seriolae

ncbi_submitter: University of the sunshine Coast


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter vonholyi

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: human gut

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chlamydia trachomatis 6276s

ncbi_submitter: Oregon State University


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Denmark: Randers

ncbi_isolation_source: activated sludge from Rand_18-Q3-R56-63

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Aalborg University


ncbi_country: China

ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. QDB12

ncbi_submitter: Soochow University


ncbi_organism_name: Christensenellaceae bacterium


ncbi_isolation_source: lactic starter (for yogurt making)

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: INRAE


ncbi_submitter: Federal University of Minas Gerais

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Xanthomonas sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Eubacterium] siraeum


ncbi_isolation_source: gut

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: Lsi

ncbi_submitter: National Institute of Genetics


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: University of Copenhagen


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: Algeria

ncbi_isolation_source: compost soil [ENVO_00005747]

ncbi_organism_name: Mycolicibacterium sp. GESEQ-9

ncbi_submitter: Czech Academy of Sciences


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Prevotella sp. UBA2725

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Woesebacteria bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;x__unclassified Candidatus Woesebacteria;s__Candidatus Woesebacteria bacterium


ncbi_organism_name: Cupriavidus gilardii

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacillus thuringiensis Bt407

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology; Goettingen Genomics Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis Bt407


ncbi_country: Russia: Republic of Altai; Kosh-Agach District

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague institute "Microbe"


ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolation_source: marine

ncbi_organism_name: Verrucomicrobiales bacterium


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Yoonia sp. F2084L

ncbi_submitter: Shandong University,Weihai


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_submitter: Institute of Marine Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Hospital Universitario Gregorio Maranon (Madrid)

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: CNAG-CRG


ncbi_assembly_name: freshwater MAG --- Umea3p4_bin-0122

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS


ncbi_organism_name: Brevibacillus laterosporus DSM 25

ncbi_strain_identifiers: DSM 25

ncbi_submitter: Kyungpook National University


ncbi_country: USA: District of Columbia

ncbi_isolation_source: Culture Sterile Body Site

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_strain_identifiers: LT2 KO STM4298

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Kansas State University


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: Puia dinghuensis

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus terminator

ncbi_submitter: Aberystwyth University


ncbi_country: China: Hubei

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_submitter: washington state university


ncbi_country: Australia: Queensland

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Australian centre for genomic epidemiological Microbiology


ncbi_country: USA: Texas

ncbi_isolation_source: leaf

ncbi_organism_name: Candidatus Liberibacter asiaticus

ncbi_submitter: USDA-APHIS


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Shanghai Institute of Technology


ncbi_assembly_name: freshwater MAG --- Loclat_bin-17606

ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: Nocardia sp. NPDC004970

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Shantou University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tateyamaria sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Dubosiella newyorkensis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mixta calida

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Australia: Victoria

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Murdoch University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Labrys sp. KB_33_2

ncbi_submitter: CCRP

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Xanthobacteraceae;g__Labrys;x__unclassified Labrys (in: a-proteobacteria);s__Labrys sp. KB_33_2


ncbi_organism_name: Cohnella silvisoli

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Arsukibacterium sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Senegal: Niokolo-Koba National Park

ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: IHU Mediterranee Infection


ncbi_country: Canada: Lacombe

ncbi_organism_name: Bacillales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Salmonella sp. NW395

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Collinsella sp. LCP19S3_C1

ncbi_submitter: Quadram Institute Bioscience