ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


gtdb_representative: f

ncbi_organism_name: Escherichia coli

ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: East China Normal University


ncbi_assembly_level: Scaffold

ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolate: AOP1_G1_surf _bin _14

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP1_G1_surf _bin _14

ncbi_submitter: Genoscope


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Taiwan: Linkou

ncbi_isolation_source: cervix

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Zhejiang University School of Medicine


ncbi_submitter: Federal University of Agriculture Abeokuta


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Vibrio sp. Vb5032

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: Houston

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The University of Texas Health Sciences Center


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- D-4_bin-66

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_level: Chromosome

ncbi_organism_name: Xanthobacter autotrophicus

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: China: Guangdong

ncbi_organism_name: Neotamlana sargassicola

ncbi_refseq_category: reference genome

ncbi_submitter: Shantou University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Dactylosporangium sp. NPDC051484

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: South Korea: Seoul

ncbi_isolation_source: catheter blood

ncbi_strain_identifiers: EFM 29

ncbi_submitter: Yonsei Medical Center


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_isolation_source: water

ncbi_organism_name: Flavobacterium sp. UBA7663

ncbi_submitter: University of Queensland


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Seoul National University


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom

ncbi_isolation_source: soil

ncbi_organism_name: Corallococcus sicarius

ncbi_submitter: Aberystwyth University


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: Norway

ncbi_isolation_source: jaw

ncbi_organism_name: Tenacibaculum maritimum

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Sandaracinobacter sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: Ecuador: Quito

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad El Bosque


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_country: China: Guangxi

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: blood; aerobic bottle

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Enterobacter vonholyi

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Fusobacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: Bacteroides acidifaciens


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Ha'il


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter haemolyticus

ncbi_submitter: Center for Genomic Sciences, National Autonomous University of Mexico (UNAM)


ncbi_assembly_level: Complete Genome

ncbi_country: Netherlands

ncbi_isolation_source: hyacinth bulb; scale leaves

ncbi_organism_name: Serratia rubidaea

ncbi_submitter: University of Gdansk, Intercollegiate Faculty of Biotechnology


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: EBI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Palma de Mallorca

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Malaysia: Johor

ncbi_isolation_source: textile wastewater

ncbi_organism_name: Hydrogenophaga sp. PBC

ncbi_strain_identifiers: PBC

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: Bacteroides caecimuris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Mexico

ncbi_organism_name: Bacillus cereus

ncbi_submitter: CINVESTAV


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: France: Saint Laurent du Maroni

ncbi_isolation_source: Bedsore

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: CHRU Besancon


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Alcanivorax sp.

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Helicobacter japonicus

ncbi_submitter: EMG


ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus H79484

ncbi_submitter: Broad Institute


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacial surface ice

ncbi_submitter: Aarhus University


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Agriterribacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Comamonadaceae bacterium


ncbi_submitter: China-Japan Friendship Hospital


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Lachnospira sp.


ncbi_organism_name: Alistipes sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Faecousia sp.


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Instituto Tecnologico de Santo Dominigo (INTEC)


ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Paraburkholderia graminis

ncbi_submitter: University of California Berkeley


ncbi_submitter: University of Calgary


ncbi_country: Brazil: Belem

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Empedobacter falsenii

ncbi_submitter: Yangzhou University


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella sp. CQ24WZ0413SAL

ncbi_submitter: Wanzhou CDC


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Polyangia bacterium

ncbi_submitter: Inha University


ncbi_country: Brazil: Fortaleza


ncbi_country: Russia

ncbi_isolation_source: urethal swab

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Engelhardt Institute of Molecular Biology, Russian Academy of Sciences,


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_organism_name: uncultured Bacilli bacterium


ncbi_country: China: HuBei

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Cronobacter malonaticus

ncbi_submitter: National Institute for Communicable Disease Control and Prevention,China CDC


ncbi_country: United Kingdom

ncbi_isolation_source: sewage

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Beijing

ncbi_isolation_source: Vallisneria natans phyllosphere

ncbi_organism_name: Rhizobium sp. FKL33

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Jatrophihabitantaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


gtdb_type_species_of_genus: t

ncbi_country: Italy

ncbi_organism_name: Eudoraea adriatica DSM 19308

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Eudoraea;s__Eudoraea adriatica;x__Eudoraea adriatica DSM 19308


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Germany

ncbi_organism_name: Mycetohabitans sp. B3

ncbi_submitter: University of Melbourne


ncbi_country: Tanzania

ncbi_isolation_source: Nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Cellulomonas sp. ICMP 17802

ncbi_submitter: Victoria University of Wellington


ncbi_country: China: Shenyang

ncbi_isolation_source: blood

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_submitter: Kyushu University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_organism_name: Mycobacteriales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: India

ncbi_submitter: Christian Medical College


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis PC1.1

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Candidatus Xenobia bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Candidatus Xenobia;x__unclassified Candidatus Xenobia;s__Candidatus Xenobia bacterium


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: USA

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Kiritimatiellia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yonathiibacteriota;s__Candidatus Yonathbacteria bacterium RIFCSPHIGHO2_01_FULL_44_41


ncbi_country: Italy: Foggia

ncbi_isolation_source: Nero di Troia red wine (vintage 2007) undergoing spontaneous MLF and collected from three different vinifications performed in the same winery

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: University of Foggia


ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: Zytex Biotech Pvt Ltd


ncbi_organism_name: Kitasatospora sp. GAS206B

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia: Melbourne

ncbi_isolation_source: Urine

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Ausgem


ncbi_country: China: Ningbo

ncbi_isolation_source: sputum

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Aerococcus loyolae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Oerskovia sp. NPDC057915

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum;sb__Candidatus Phytoplasma australasiaticum subsp. ipomoeae


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Gar CS 5

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Rhodobacteraceae bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Acinetobacter baumannii 45075_1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Stanford University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_country: USA: Baltimore

ncbi_isolation_source: Mid-vagina

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: University of Maryland Baltimore


ncbi_country: Brazil: Parana

ncbi_isolation_source: Soil from rainforest

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Universidade Estadual de Londrina - UEL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Netherlands

ncbi_isolation_source: Pea soup (24h 60 C degree)

ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: University of Groningen


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli

ncbi_submitter: Medical University of Vienna


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Legionella sp.

ncbi_submitter: Max planck institute for marine microbiology


ncbi_assembly_name: Psychrobacter priscuii LFX-15B1

ncbi_isolate: Psychrobacter priscuii LFX-15B1

ncbi_isolation_source: lake water

ncbi_organism_name: Psychrobacter sp. LFX-11D

ncbi_strain_identifiers: Psychrobacter priscuii LFX-15B1

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Norway

ncbi_organism_name: Francisella noatunensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Mailhella sp.


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Burkholderia orbicola

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Desulfomonilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Russia: Karabetova Gora near the city of Taman

ncbi_isolation_source: sediment and water from a salsa lake of a terrestrial mud volcano

ncbi_organism_name: Candidatus Syntrophosphaera sp.

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Syntrophosphaera;x__unclassified Candidatus Syntrophosphaera;s__Candidatus Syntrophosphaera sp.


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Rosselkhoznadzor The Russian State Center for Animal Feed and Drug Standardization and Quality


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad Autonoma Metropolitana Unidad Xochimilco


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Simonsiella muelleri ATCC 29453

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_country: Thailand

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: University of Alberta


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_country: Thailand: Bangkok

ncbi_organism_name: Shigella boydii


ncbi_country: China:Henan; Nanyang

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: India

ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_strain_identifiers: LMG 918

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: EMG


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV250

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Russia: near of the village Orekhov; Leningrad region

ncbi_isolation_source: soil

ncbi_organism_name: Cupriavidus sp. D39

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_organism_name: uncultured Opitutus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingopyxis alaskensis

ncbi_submitter: University of South Africa


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;x__unclassified Rickettsiales;s__Rickettsiales endosymbiont of Dermacentor nuttalli


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Avibacterium gallinarum

ncbi_strain_identifiers: SCPM-O-B-15499 (Shiryaevo PSK-5)

ncbi_submitter: SRCAMB


ncbi_organism_name: uncultured Terracidiphilus sp.


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Switzerland

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Acinetobacter baumannii


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Azonexus sp.


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Haifa


ncbi_assembly_name: freshwater MAG --- Ki1-2-2m_bin-233

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Verona, Italy


ncbi_country: Netherlands: Groningen

ncbi_submitter: unverisity medical center groningen


ncbi_country: Peru: Oxygen minimum zone

ncbi_isolation_source: marine sediment

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: Kiel University


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: enrichment of activated sludge from Daejeon WWTP

ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: KAIST


ncbi_organism_name: uncultured Microbacterium sp.

ncbi_submitter: EMG


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA5145


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: rhizosphere soil culture M58

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Parvularculaceae bacterium


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ-2014-D3_bin-134

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: mesophilic anaerobic digestion

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: China: Shandong

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: Escherichia sp. WS1085

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Deinococcus aluminii

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Aeromonadaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: California

ncbi_organism_name: Pseudomonas cannabina pv. alisalensis

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas cannabina;x__Pseudomonas cannabina pv. alisalensis


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Bermanella sp.

ncbi_submitter: EMG


ncbi_country: USA: CA

ncbi_isolation_source: Dental plaque

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pasteurellales;f__Pasteurellaceae;g__Aggregatibacter;s__Aggregatibacter actinomycetemcomitans;x__Aggregatibacter actinomycetemcomitans serotype e str. SA3096


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Czech Republic

ncbi_isolation_source: clinical sample

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Faculty of Medicine, Charles University


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Proteus mirabilis


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Antarctica: South Shetland islands; King George Island

ncbi_organism_name: Subtercola boreus

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Belgium

ncbi_organism_name: Brachyspira hyodysenteriae

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Emergencia sp.


ncbi_country: Iceland

ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus mutans B

ncbi_strain_identifiers: B

ncbi_submitter: Cornell University


ncbi_country: Thailand: Chonburi

ncbi_isolation_source: Chonburi

ncbi_organism_name: Allobacillus saliphilus

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Helicobacter typhlonius


ncbi_country: South Korea

ncbi_isolation_source: Korean infant

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_strain_identifiers: BORI

ncbi_submitter: BIFIDO Co., LTD


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR1091

ncbi_submitter: The Chinese University of Hong Kong


ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter sp. MGH 14

ncbi_strain_identifiers: MGH 14

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 14


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: China: Hangzhou

ncbi_isolation_source: contaminated soil

ncbi_organism_name: Curvibacter soli

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Australia: Northern Territory

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_isolate: Bordetella pertussis

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_strain_identifiers: VS401;Bordetella pertussis

ncbi_submitter: Institute of Microbiology of the Czech Academy of Sciences, v.v.i.


ncbi_country: Spain

ncbi_isolation_source: tonsil swab

ncbi_organism_name: Staphylococcus gallinarum

ncbi_submitter: Wageningen University and Research


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces


ncbi_organism_name: Anaerovorax odorimutans DSM 5092

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Australia

ncbi_isolation_source: cellulose fed anaerobic digester inoculated with sludge

ncbi_organism_name: Fibrobacteria bacterium AD312

ncbi_submitter: The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fibrobacterota;c__Fibrobacteria;x__unclassified Fibrobacteria;s__Fibrobacteria bacterium AD312


ncbi_submitter: VCU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Kinetoplastidibacterium;s__Candidatus Kinetoplastidibacterium galati;x__Candidatus Kinetoplastidibacterium galati TCC219


ncbi_country: United Kingdom: Sparsholt; Hampshire

ncbi_isolation_source: porcine fecal sample

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Quadram Institute BioScience


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: Colorado; Gunnison County

ncbi_isolation_source: louse from fur of Tamias minimus

ncbi_organism_name: Candidatus Lightella neohaematopini

ncbi_submitter: University of South Bohemia in Ceske Budejovice, Faculty of Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__lice endosymbionts;g__Candidatus Lightella;s__Candidatus Lightella neohaematopini


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Svalbard: Kongsfjorden

ncbi_isolation_source: Sea water

ncbi_organism_name: Pseudomonas huanghezhanensis

ncbi_submitter: Polar Research Institute of China


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus thuringiensis


ncbi_organism_name: uncultured Pelolinea sp.


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_isolation_source: marine

ncbi_organism_name: Gimesia maris

ncbi_submitter: University of Queensland


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Dubosiella sp.


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: Calf burn

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Xiamen University


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_submitter: Penn State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_country: Romania: Pitesti

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Nocardia sp. MH4

ncbi_submitter: Faculty of Biology, University of Bucharest


ncbi_country: Canada: Alberta

ncbi_isolation_source: 2 cells amplificed by MDA; enrichment culture from a tailing pond

ncbi_organism_name: Mesotoga sp. SC_NapDC

ncbi_submitter: University of Alberta


ncbi_country: China: Hubei

ncbi_isolation_source: sputum

ncbi_submitter: Wuhan CDC


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: oak leaf

ncbi_organism_name: Rhizobium quercicola

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Inner Mongolia Medical University


ncbi_organism_name: uncultured Pyrinomonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Sangeribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas benzopyrenica

ncbi_submitter: KAUST


ncbi_organism_name: Escherichia coli

ncbi_submitter: Leibniz Institute of Photonic Technology


ncbi_organism_name: Neglectibacter timonensis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolate: AOP25_A1_surf _bin _7

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: AOP25_A1_surf _bin _7

ncbi_submitter: Genoscope


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Streptomyces sp. NPDC014738

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__gamma proteobacterium symbiont of Clathrolucina costata


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Solirubrobacterales bacterium


ncbi_country: South Korea: Jeju

ncbi_isolation_source: soil

ncbi_organism_name: Noviherbaspirillum galbum

ncbi_submitter: Seoul Women's University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: EMG


ncbi_country: China: South China Sea

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: KOREA FOOD RESEARCH INSTITUTE


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: water

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: India: Police bazaar; Shillong; Meghalaya

ncbi_isolation_source: Chevon

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_country: Nigeria

ncbi_isolation_source: fermented cassava roots (fufu)

ncbi_organism_name: Lactiplantibacillus argentoratensis DSM 16365

ncbi_submitter: Shanghai Majorbio


ncbi_organism_name: Raoultella ornithinolytica

ncbi_strain_identifiers: Ngtc RS 25

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Megamonas funiformis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_assembly_name: Rumen uncultured genome RUG12194

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Beijing

ncbi_isolation_source: oral sawb

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Argentina

ncbi_isolation_source: Osteomyelitis

ncbi_organism_name: Staphylococcus aureus DAR3144

ncbi_submitter: Broad Institute


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci 03DC35

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: China: Qingdao

ncbi_organism_name: Pseudomonas monteilii

ncbi_submitter: Ocean University of China


ncbi_organism_name: Paraperlucidibaca baekdonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Washington state

ncbi_isolation_source: stool/fecal sample

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Italy: Friuli-Venezia Giulia; Monfalcone

ncbi_isolation_source: Haemodialysis Unit Monfalcone

ncbi_organism_name: Ralstonia mannitolilytica

ncbi_strain_identifiers: Patient MN16

ncbi_submitter: University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Sassari


ncbi_country: USA: Maunalua Bay; Oahu; Hawaii

ncbi_isolation_source: Sand flats

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of North Carolina at Chapel Hill


ncbi_organism_name: uncultured Schaedlerella sp.


ncbi_organism_name: Bacillus maqinnsis

ncbi_submitter: qinghaiuniversity


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus sp. GDX8P74P

ncbi_submitter: South China Agricultural University


ncbi_country: Bermuda: UK

ncbi_isolation_source: Crystal Cave; a limestone cave

ncbi_organism_name: Scytonema hofmannii PCC 7110

ncbi_submitter: Heinrich-Heine-University Duesseldorf


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: CCUG 890

ncbi_submitter: Umea University


ncbi_country: South Korea: Je-ju

ncbi_isolation_source: seaweed

ncbi_organism_name: Rhodophyticola sp. CCM32

ncbi_submitter: Dankook University


ncbi_organism_name: Fusobacterium polymorphum

ncbi_submitter: Trinity College Dublin


ncbi_country: USA

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The Ohio State University


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Malaysia: Kuala Pangsun village

ncbi_isolation_source: fecal sample

ncbi_organism_name: Lawsonibacter asaccharolyticus

ncbi_submitter: New York University


ncbi_country: Canada: Medicine Hat Glauconitic field

ncbi_isolation_source: waste water

ncbi_organism_name: Comamonadaceae bacterium UBA6202

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: freshwater

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea: Jinju

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Australia: Tasmania; Dairy Farm

ncbi_isolation_source: dairy equipment filters

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University of Tasmania


ncbi_isolation_source: BAL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: New Jersey Medical School-Rutgers University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Atlanta; GA

ncbi_organism_name: Streptococcus agalactiae CNCTC 10/84

ncbi_strain_identifiers: 84;CNCTC 10

ncbi_submitter: IGS


ncbi_organism_name: Rhizomicrobium sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Institute of Soil Biology and Biogeochemistry, Biology Cenre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Canada: Lake Hazen

ncbi_isolation_source: sediment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Ottawa


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: China: Hangzhou

ncbi_organism_name: Pseudomonas shahriarae

ncbi_submitter: Zhejiang Gongshang University


ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_isolation_source: Human feces

ncbi_organism_name: Eubacterium sp. LMAG:57

ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. LMAG:57


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Japan: Shiga

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Tokyo Institute of Technology


ncbi_country: Sudan

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Khartoum


ncbi_country: Italy

ncbi_organism_name: Sinorhizobium medicae DI28

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Microbacterium sp. TS-1

ncbi_submitter: Toyo University


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Mesorhizobium sp. M0400

ncbi_submitter: Washington State University


ncbi_assembly_name: freshwater MAG --- KT2_bin-017

ncbi_isolation_source: lake water

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11290

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Anaerostipes hadrus


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_isolation_source: blood

ncbi_submitter: Public Health Ontario laborato

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: feces

ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: tundra soil

ncbi_organism_name: uncultured Chthoniobacterales bacterium

ncbi_submitter: University of Helsinki


ncbi_country: USA: Geneva; Illinois

ncbi_isolation_source: fountain water

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_isolation_source: Human

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Streptomyces sp. NPDC004267

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: McGill University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus gallolyticus subsp. gallolyticus

ncbi_submitter: Genopole Institut Pasteur


ncbi_organism_name: Shivajiella indica

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Viridibacillus arvi


ncbi_organism_name: Vibrio sp. R78045

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Marmoricola sp.

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Christensenellales bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: South Korea: Jangsu

ncbi_isolation_source: soil

ncbi_organism_name: Terribium terrae

ncbi_submitter: Microorganism Resources Division, Biological Resources Research Deportment, National Institute of Biological Resources, Incheon. Republic of Korea


ncbi_country: Viet Nam

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: uncultured Myxococcota bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__environmental samples;s__uncultured Myxococcota bacterium


ncbi_country: USA

ncbi_isolation_source: CANDO+P Bioreactor

ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: South Africa

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0067

ncbi_submitter: Broad Institute


ncbi_country: USA: Virginia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Case 5

ncbi_submitter: National Reference Centre for Multidrug-resistant Gram-negative Bacteria (NRC)


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Akkermansia muciniphila


ncbi_assembly_name: IMG-taxon 2634166320 annotated assembly

ncbi_organism_name: Cloacibacterium normanense

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Treponema sp.

ncbi_submitter: Quadram Institute BioScience


ncbi_organism_name: Ralstonia solanacearum MolK2

ncbi_submitter: Genoscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Ralstonia;x__Ralstonia solanacearum species complex;s__Ralstonia solanacearum;x__Ralstonia solanacearum MolK2


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: North Sea

ncbi_isolation_source: 10 sea water samples from phytoplankton spring bloom collected during Heincke cruise HE327

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Microbiology and Genetics


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: New Zealand: South Island; Marlborough; Capsize Point

ncbi_isolation_source: marine sponge

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: VICTORIA UNIVERSITY WELLINGTON


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_organism_name: Pseudolabrys sp.


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Porcinotec Co., Ltd


ncbi_country: Canada: New Brunswick

ncbi_organism_name: Aerococcaceae bacterium NML130460

ncbi_submitter: National Microbiology Laboratory, Public Health Agency of Canada


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: JiangSu

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Japan

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides graminisolvens;x__Bacteroides graminisolvens DSM 19988 = JCM 15093


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Rhodocyclaceae bacterium


ncbi_organism_name: uncultured Turicibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Somalia

ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: Canada: Ontario

ncbi_organism_name: Xanthomonas hortorum pv. gardneri

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: Hong Kong

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: feces

ncbi_submitter: Aarhus University Hospital


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: SC


ncbi_organism_name: Rhizobium sp. TBD182

ncbi_submitter: National Agriculture and Food Research Organization


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Campylobacter concisus


ncbi_country: China

ncbi_organism_name: Halobacteriovorax sp. Y22

ncbi_submitter: Huaqiao University


ncbi_country: United Kingdom

ncbi_submitter: Swansea University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Paraguay: Nueva Italia

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_organism_name: Providencia alcalifaciens

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: South Korea

ncbi_isolation_source: Chicken meat

ncbi_submitter: National Institute of Food and Drug Safety Evaluation


ncbi_organism_name: Enterobacter hormaechei


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Streptomyces bacillaris

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: Dairy cattle

ncbi_submitter: Agricultural Research Service, United States Department of Agriculture

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bardo


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Minisyncoccota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_isolation_source: manure from farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_country: United Arab Emirates

ncbi_isolation_source: Foot necrotic tissue

ncbi_organism_name: Ignatzschineria cameli

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus lactis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Universite Laval

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: human sputum

ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Toho University


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Spain: San Sebastian

ncbi_isolation_source: sputum bronchus

ncbi_organism_name: Nocardia donostiensis

ncbi_submitter: CDC


ncbi_organism_name: Pseudomonas frederiksbergensis

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Italy: Florence

ncbi_isolation_source: various material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA: OR

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: FDA


ncbi_organism_name: Enterobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Factory - External Area

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Surrey


ncbi_country: Canada: Aylmer; Quebec

ncbi_isolation_source: root nodule from soybean plant inoculated with root zone soil from Amphicarpa bracteata

ncbi_organism_name: Bradyrhizobium symbiodeficiens

ncbi_submitter: Ottawa Research and Development Center


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Deltaproteobacteria bacterium UBA2138

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium UBA2138


ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: The Eighth Affiliated Hospital of Sun Yat-sen University


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Human rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of Chicago


ncbi_country: USA: Dallas

ncbi_isolation_source: rectal swab

ncbi_strain_identifiers: Dallas 51_4


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Rhodococcus yananensis

ncbi_submitter: BGI Research


ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Parvibaculaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Amylibacter sp.


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Rufibacter immobilis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Cryptobacterium sp.


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Tahi Moana Above plume background

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: sun-yat-sen university


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactobacillus delbrueckii subsp. bulgaricus

ncbi_submitter: Bursa GYKMAE


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterobacter bugandensis


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China:Yunnan province

ncbi_isolation_source: native outdoor hot spring sediment

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Fudan University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Italy

ncbi_isolation_source: urine

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: Faeces


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shanghai

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: City university of Hong Kong


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: pig feed

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Yangzhou University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: environment

ncbi_organism_name: Vibrio sp. Vb0877

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: stool

ncbi_submitter: 2nd Faculty of Medicine, Charles University and Motol University Hospital


ncbi_organism_name: Spirochaetia bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_isolation_source: Beef carcass after final wash

ncbi_organism_name: Enterococcus faecalis


ncbi_country: Australia: Brisbane

ncbi_isolation_source: patient CF7 cystic fibrosis lung

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Menzies School of Health Research


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Alloprevotella tannerae

ncbi_submitter: EMG


ncbi_country: China:Zhejiang Province

ncbi_isolation_source: sputum

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: Germany: Karlsruhe

ncbi_isolation_source: fecal sample

ncbi_organism_name: Adlercreutzia rubneri

ncbi_submitter: Max Rubner-Institut


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Department of Laboratory Medicine


ncbi_isolation_source: CF sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: universita degli studi di verona


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Kenya: Nyanza Province

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland School of Medicine


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_submitter: Christian Medical College


ncbi_organism_name: Pantoea piersonii


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_submitter: Helsinki University


ncbi_organism_name: Sphingomonas sp.


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD16765

ncbi_submitter: Broad Institute


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Pakistan: Mithi

ncbi_isolation_source: Plant Root

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: King Abdullah University of Science and Technology


ncbi_country: South Korea: Chungnam

ncbi_isolation_source: center of the feces

ncbi_organism_name: Kribbibacterium absianum

ncbi_submitter: ABS Research Support Center


ncbi_isolation_source: human feces

ncbi_submitter: UW-GEL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Budviciaceae;g__Leminorella;s__Leminorella grimontii;x__Leminorella grimontii ATCC 33999 = DSM 5078


ncbi_assembly_name: B. cereus 03BB102

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Iowa

ncbi_isolation_source: ceca

ncbi_organism_name: Megasphaera stantonii

ncbi_submitter: USDA ARS


ncbi_country: China: Gungdong

ncbi_isolation_source: hydrothorax

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: single cell amplified by MDA

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Mesorhizobium sp. M0139

ncbi_submitter: Washington State University


ncbi_isolation_source: Faeces

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Thalassobellus suaedae

ncbi_submitter: Seoul National University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Olsenella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA

ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1291820

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Iran

ncbi_isolation_source: blood

ncbi_submitter: University of Technology Sydney


ncbi_country: Turkmenistan: Darvaz

ncbi_isolation_source: Desert soil

ncbi_organism_name: Nonomuraea sp. KC401

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: Environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell' Abruzzo e del Molise


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_assembly_name: Rumen uncultured genome RUG13007

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Gyeonggi

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter citatus

ncbi_submitter: Seoul Women's University


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Lautropia dentalis

ncbi_strain_identifiers: KCOM 2505

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China: Guangdong

ncbi_organism_name: Mycoplasmopsis anatis

ncbi_submitter: WENS Foodstuff Group Co., Ltd. Rsearch Institute


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kintambo


ncbi_country: South Korea: Jindo

ncbi_isolation_source: a tidal flat

ncbi_organism_name: Alteromonas aestuariivivens

ncbi_submitter: Shandong University,Weihai


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_country: USA: Minneapolis; MN

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University


ncbi_isolation_source: private dog fecal sample

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: hospital

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Aarhus University


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: France: Montiers

ncbi_isolation_source: Microscale soil grain

ncbi_organism_name: Streptomyces sp. RLB1-9

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_assembly_name: Rumen uncultured genome RUG10002

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG13400


ncbi_country: India: Chandigarh

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_assembly_name: Rumen uncultured genome RUG10804


ncbi_country: Italy: Ugento; Lecce; Apulia

ncbi_isolation_source: olive twig showing symptoms of olive quick decline syndrome

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: CNR


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacteroides clarus


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_country: Canada: British Columbia

ncbi_isolation_source: potato

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_submitter: North-West University


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Pseudomonas arabinosi

ncbi_submitter: Insititute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_assembly_name: freshwater MAG --- MJ-2014-D1_bin-0988

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Borreliella afzelii

ncbi_submitter: LMU Munich


ncbi_country: Italy: Bologna

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli O15:H18

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: China: Guizhou

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Sphingomonas aquatilis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom: Surrey

ncbi_isolation_source: equine fecal microbiome

ncbi_organism_name: Candidatus Colivicinus equi

ncbi_submitter: Quadram Institute


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. CVAP#3

ncbi_submitter: Smith College


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii UH12408

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Australia: QLD

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_country: Canada: Ontario

ncbi_isolation_source: Herd 210

ncbi_organism_name: Staphylococcus simulans

ncbi_strain_identifiers: SNUC 1368

ncbi_submitter: University of Calgary


ncbi_country: USA: Washington

ncbi_isolation_source: Enviornmental

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Barcelona


ncbi_submitter: The Italian National Institute of Health


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_organism_name: Streptococcus mitis B6

ncbi_submitter: Department of Microbiology, University of Kaiserslautern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus mitis group;s__Streptococcus mitis;x__Streptococcus mitis B6


ncbi_country: South Korea: Jejudo

ncbi_isolation_source: Diseased olive flounder

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Pukyong National University


ncbi_isolate: CON2 bin26

ncbi_organism_name: Bacteroidales bacterium

ncbi_strain_identifiers: CON2 bin26

ncbi_submitter: China Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium RIFCSPLOWO2_12_FULL_44_32


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Slovenia: Marine Biology Station Piran

ncbi_organism_name: Caldilineaceae bacterium bin5

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research Kiel


ncbi_country: China: Pearl River estuary

ncbi_isolation_source: surface sediment from the estuary of Pearl river treated with pyrene for 6 days

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Shantou University


ncbi_organism_name: Enterobacter cloacae complex sp.

ncbi_submitter: Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: Fermented Rice

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Faculty of Agro-industry, Prince of Songkla University, wageningen university


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: NanJing University


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: France

ncbi_isolation_source: Axillary lymph node

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Rhodanobacter sp.

ncbi_submitter: University of Oklahoma


ncbi_isolation_source: Hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BIOZENTRUM, UNIVERSITY OF BASEL


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_country: India: Narodi

ncbi_isolation_source: Well freshwater

ncbi_organism_name: Ureibacillus aquaedulcis

ncbi_submitter: National Centre for Cell Science


ncbi_country: Italy: Florence

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Florence


ncbi_assembly_name: Rumen uncultured genome RUG11529

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces xinghaiensis

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: China: Erdos Basin

ncbi_isolation_source: shale

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Northwest University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Soil

ncbi_submitter: MASSEY UNIVERSITY


ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Falkowbacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;x__unclassified Candidatus Falkowbacteria;s__Candidatus Falkowbacteria bacterium


ncbi_country: Kuwait

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Kuwait University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Gallacutalibacter;s__Candidatus Gallacutalibacter stercoravium


ncbi_organism_name: Bacillus paramycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_country: China: Yangzhou

ncbi_isolation_source: ground water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Yangzhou University


ncbi_country: Portugal: Matosinhos

ncbi_isolation_source: feces from hospitalized patient

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Faculdade de Farmacia, Universidad do Porto


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Germany: Golm

ncbi_isolation_source: root

ncbi_organism_name: Microbacterium sp. Root280D1

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: India

ncbi_isolation_source: blood

ncbi_submitter: Christian Medical College


ncbi_country: Germany

ncbi_organism_name: Myroides sp. LoEW2-1

ncbi_submitter: Robert Koch-Institut


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Bangladesh

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: SC