ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium M1

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium M1


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Corynebacterium matruchotii

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China: Tianjin

ncbi_isolation_source: feces

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: China: Jiaxing

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Jiaxing Center for Disease Control and Prevention


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8299

ncbi_submitter: The Xanthomonas Threats project


gtdb_representative: t

ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Polaromonas sp. 39-63-25


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_country: Belgium

ncbi_isolation_source: not known


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: IMG-taxon 2651870109 annotated assembly

ncbi_organism_name: Mucilaginibacter gossypiicola

ncbi_refseq_category: reference genome

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from type material


ncbi_assembly_name: CLCbio

ncbi_organism_name: Novosphingobium sp. KN65.2

ncbi_submitter: KU Leuven


ncbi_country: USA:San Diego

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Greece

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital of Larissa


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_submitter: Northwest A&F University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__Flavobacteriales incertae sedis;g__Candidatus Karelsulcia;s__Candidatus Karelsulcia muelleri


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Halopseudomonas laoshanensis

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_strain_identifiers: RCAM 503

ncbi_submitter: All-Russia Research Institute for Agricultural Microbiology


ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: USA: California; Calistoga

ncbi_organism_name: Acidobacteriota bacterium


ncbi_organism_name: Treponema sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Legionella sp. ST3F1

ncbi_submitter: University of Bologna


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Gammaproteobacteria bacterium


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Haliea sp.

ncbi_submitter: Max planck institute for marine microbiology


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Southwest Medical University


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG14296

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H24637

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_country: India: Khirganga hotspring; Himachal Pradesh; Northern Hiamayas

ncbi_isolation_source: hotspring water

ncbi_organism_name: Caenispirillum bisanense

ncbi_submitter: University of Delhi


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University College Cork


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Candidatus Zhuqueibacterota bacterium

ncbi_submitter: Oklahoma State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;x__unclassified Candidatus Zhuqueibacterota;s__Candidatus Zhuqueibacterota bacterium


ncbi_organism_name: Treponema socranskii

ncbi_strain_identifiers: OMZ 885

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Peking Union Medical College Hospital


ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Univeristy of Pretoria and National Health Laboratory Services


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: uncultured Bacteroidaceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


gtdb_type_species_of_genus: t

ncbi_isolation_source: Rumen

ncbi_organism_name: Wolinella succinogenes

ncbi_submitter: SC


ncbi_country: China: Jiulong River; Fujian

ncbi_isolation_source: mangrove sediment

ncbi_organism_name: Acidimangrovimonas sediminis

ncbi_submitter: Xiamen University


ncbi_country: USA

ncbi_isolation_source: Feral swine feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_organism_name: Defluviitoga tunisiensis

ncbi_submitter: University of Waterloo


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acetobacter orleanensis

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: national health research institutes


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0304777.5

ncbi_submitter: IGS


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: EMG


ncbi_organism_name: Streptomyces sp. NPDC059248

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken caecal content

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Nepal: Guheswori

ncbi_isolation_source: Wild animal

ncbi_submitter: Leibniz Institute of Photonic Technology (IPHT)


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: France: Bordeaux

ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Institut Pasteur Montevideo


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_assembly_level: Chromosome

ncbi_organism_name: Chlamydia trachomatis L2b/Ams4

ncbi_submitter: Sanger Institute


ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam

ncbi_isolation_source: hemolymph

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UT Southwestern Medical Center


ncbi_organism_name: Sphaerochaeta sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Solobacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: Germany

ncbi_isolation_source: ear swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Swansea University


ncbi_submitter: Huzhou CDC


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. AF26-7BH

ncbi_submitter: BGI


ncbi_country: Mexico

ncbi_isolation_source: Heads

ncbi_organism_name: Lactococcus sp. S47

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_organism_name: Brachybacterium paraconglomeratum

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia

ncbi_isolation_source: environmental sample

ncbi_organism_name: Burkholderia pseudomallei MSHR5569

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater


ncbi_country: Spain: Asturias

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: CHU de Bordeaux


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: Adult Human Intestine

ncbi_organism_name: Clostridium sp. SY8519

ncbi_submitter: Gifu University, United Graduate School of Agricultural Science


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Wenzhou Medical University


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Waterline

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Alteromonas macleodii

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Ruzzini Lab


ncbi_organism_name: Variovorax sp. NFACC29

ncbi_submitter: University of the Pacific


ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: Candidatus Binatia bacterium

ncbi_submitter: SponGES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__unclassified Candidatus Binatia;s__Candidatus Binatia bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Oregon State University


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Coprococcus sp.


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Yangzhou University


ncbi_country: USA: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep marine sediment from hydrothermal vent

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: Canada: Alberta

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Bacteriovorax sp.

ncbi_submitter: EMG


ncbi_organism_name: Salmonella sp. NW915

ncbi_submitter: Sichuan University


ncbi_organism_name: Salmonella sp. LSP 87/13

ncbi_submitter: University of Oviedo


ncbi_isolation_source: lake water

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Brazil: Amazonas; Iranduba

ncbi_isolation_source: Rain forest

ncbi_organism_name: Leuconostocaceae bacterium ESL0723

ncbi_submitter: University of Lausanne


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xiamen University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: Colombia: Tuquerres

ncbi_isolation_source: gastric antrum biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Taiwan

ncbi_isolation_source: plant tissue

ncbi_organism_name: Xylella taiwanensis

ncbi_submitter: Academia Sinica


ncbi_country: USA: CA

ncbi_isolation_source: trachea chicken (Gallus gallus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Lebanon

ncbi_isolation_source: Fresh Produce 10

ncbi_submitter: University of Wyoming


ncbi_country: South Korea:Kyungpook

ncbi_submitter: Kyungpook National University


ncbi_country: Israel: Gulf of Aqaba

ncbi_isolation_source: Net Tow

ncbi_organism_name: Trichodesmium sp. MAG_R02

ncbi_submitter: Hebrew University of Jerusalem


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Planctomyces sp.

ncbi_submitter: University of Montreal


ncbi_isolation_source: bile

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Ningbo First Hospital


ncbi_organism_name: Stenotrophomonas sepilia

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_assembly_name: freshwater MAG --- AM-2014-D2_bin-660

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: Salmonella sp. NW981

ncbi_submitter: Sichuan University


ncbi_organism_name: Streptomyces sp. SS7

ncbi_submitter: Center for Research and Application in Bioscience


ncbi_organism_name: Sphingomonas paucimobilis

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Guangxi University


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan hospital


ncbi_isolation_source: wound knee

ncbi_organism_name: Staphylococcus sp. HMSC036A09

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Sphingobacterium multivorum


ncbi_country: Indonesia:West Java; Gunung Salak

ncbi_isolation_source: Soil

ncbi_organism_name: Dictyobacter aurantiacus

ncbi_submitter: Microbial resources, Graduate School of Agricultual Science, Tohoku University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola dorei


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Romboutsia sp. 1001216sp1

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Christian Medical College and Hospital


ncbi_country: USA: Big Springs; Nebraska

ncbi_organism_name: Arthrobacter globiformis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: France

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Ruminococcaceae bacterium UBA3938

ncbi_submitter: University of Queensland


ncbi_country: Lithuania

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Eggerthellaceae bacterium

ncbi_submitter: Nanjing university


ncbi_organism_name: Colwellia sp.

ncbi_submitter: University of Montana


ncbi_country: Switzerland

ncbi_isolation_source: human feces in bioreactor

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: ETH Zurich


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Methylophaga sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0596R

ncbi_submitter: Broad Institute


ncbi_country: South Korea: Nonsan

ncbi_isolation_source: Livestock Wastewater

ncbi_organism_name: Stenotrophomonas sp. NLF4-10

ncbi_submitter: Nakdonggang National Institute of Biological Resources (NNIBR)


ncbi_country: Canada: Calgary

ncbi_isolation_source: bioreactors innoculated with microbial mats from alkaline soda lake

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Calgary


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15973


ncbi_assembly_name: Rumen uncultured genome RUG13350

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_country: Canada:Edmonton; University of Alberta; Ellerslie farm

ncbi_isolation_source: leaves of field beans

ncbi_organism_name: Pseudomonas sp. KUIN-1

ncbi_submitter: Department of Life Science & Biotechnology, Kansai University


ncbi_country: USA: WA

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Washington


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Oscillospiraceae bacterium CM18GR_54

ncbi_submitter: University of Trento


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shenzhen University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Cardiff University School of Medicine


ncbi_isolate: FAECES

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: Campylobacter jejuni;FAECES

ncbi_submitter: LSHTM


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Japan: Hokkaido; Sapporo

ncbi_isolate: SMKOSYEZ

ncbi_organism_name: Candidatus Karelsulcia muelleri

ncbi_strain_identifiers: SMKOSYEZ

ncbi_submitter: John McCutcheon


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EBI


ncbi_country: USA: Maryland

ncbi_isolation_source: Monobia quadriens

ncbi_organism_name: Mesoplasma florum

ncbi_submitter: Universite de Sherbrooke


ncbi_country: USA: CO

ncbi_organism_name: Bordetella holmesii

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Staphylococcus aureus M64056

ncbi_submitter: Broad Institute


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: The University of Texas MD Anderson Cancer Center Department of Lymphoma & Myeloma


ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Child Health Research Foundation


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: ocular swab

ncbi_organism_name: Streptococcus pneumoniae K2527

ncbi_submitter: Carnegie Mellon University


ncbi_country: Denmark

ncbi_isolation_source: kidney of farmed rainbow trout

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Tokyo Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Sediminibacterium ginsengisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_organism_name: Escherichia coli

ncbi_submitter: NTNU


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Schleiferiaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Monash University


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Conexibacteraceae bacterium


ncbi_organism_name: uncultured Wenzhouxiangella sp.


ncbi_submitter: Center for Microbial Communities


ncbi_isolate: SPRUCE 192

ncbi_organism_name: Anaerolineales bacterium

ncbi_strain_identifiers: SPRUCE 192

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Rhizobiaceae bacterium


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Laboratoire de Microbiologie. University hospital Sahloul


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: AIMST University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__candidate division WS6 bacterium GW2011_GWC1_33_20


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Canada: Quebec

ncbi_isolation_source: combination of 24 samples (8 from lake Croche; 8 from Montjoie and 8 from Simoncouche) collected from 2013 through 2014

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: Joint Genome Institute


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Capital Institute of Pediatrics


ncbi_organism_name: Desulfocucumaceae bacterium


ncbi_organism_name: Cytophagales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_isolation_source: Human

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Department of Food and Agricultural Sciences, Alma Mater Studiorum - University of Bologna


ncbi_isolation_source: not known

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: hydrothermal fluid

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: University of Utah

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Brazil

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_country: Antarctica

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas sp. D3

ncbi_submitter: Wuhan University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Stenotrophomonas maltophilia RA8

ncbi_submitter: Karlsruhe Institue of Technology - Institue of functional Interfaces


ncbi_country: Germany

ncbi_organism_name: Streptomyces murinus

ncbi_strain_identifiers: NRRL B-2286

ncbi_submitter: USDA/ARS/NCAUR


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: hospitalized patients

ncbi_organism_name: Shigella flexneri 4c

ncbi_submitter: Hangzhou Normal University


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Jiangsu Academy of Agricultural Sciences, Nanjing


ncbi_country: USA: Wyoming

ncbi_isolation_source: Rumen fluid

ncbi_organism_name: Bacteroidales bacterium UBA2764

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2764


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: Soochow University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Enorma phocaeensis

ncbi_submitter: URMITE


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Costa Rica

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: Estonia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_submitter: FDA/CFSAN


ncbi_country: South Africa: Schoenmakerskop

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Desulfobacula sp.

ncbi_submitter: University of Wisconsin, Madison


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Tang lab


ncbi_country: Romania: Bucharest

ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_isolate: Psychrobacter immobilis 1617

ncbi_isolation_source: gills of lemon sole

ncbi_organism_name: Psychrobacter immobilis

ncbi_strain_identifiers: Psychrobacter immobilis 1617

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_assembly_name: Salmonella enterica CVM N46825 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Thalassospira sp. UBA2642


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_country: Turkey: Diyarbakir; Ergani

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Chengdu; Sichuan

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: USA: Detroit; Michigan; urban community garden

ncbi_isolation_source: soil

ncbi_organism_name: Lysobacter sp. ESA13C

ncbi_submitter: Wayne State University


ncbi_country: South Korea: Yeongin-myeon; Asan-si; Chungcheongnam-do

ncbi_isolation_source: orchard

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_assembly_name: Rumen uncultured genome RUG11526

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Dialister invisus

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: Faculty of Veterinary, Universidad Complutense de Madrid


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium TMED193

ncbi_submitter: University of Southern California


ncbi_country: USA: MD

ncbi_isolation_source: Hybrid Tilapia

ncbi_organism_name: Bacillus cereus

ncbi_submitter: OARSA, CFSAN


ncbi_country: Poland: Bytom; Miechowice

ncbi_isolation_source: the activated sludge of a sewage treatment plant

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Silesia in Katowice


ncbi_organism_name: Chromobacterium vaccinii

ncbi_submitter: Universidade Estadual de Londrina - UEL


ncbi_country: USA: La Mesa; CA

ncbi_isolation_source: enrichment culture of hot tap water

ncbi_organism_name: Thermus scotoductus

ncbi_submitter: Penn State University


ncbi_assembly_name: Rumen uncultured genome RUG11744

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus M42514

ncbi_submitter: Broad Institute


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_submitter: University of Zurich


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0147


ncbi_organism_name: Brevundimonas terrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Xiamen University


ncbi_country: China: Shanghai

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shanghai Jiao Tong University


ncbi_country: USA

ncbi_isolation_source: Invasive

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Oenococcus oeni

ncbi_submitter: UMR oenologie


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolation_source: Acid mine drainage site biofilm from emergence

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: University of California Davis


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7209

ncbi_submitter: University of Queensland


ncbi_organism_name: Polynucleobacter sphagniphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Candidatus Anammoximicrobium sp.

ncbi_submitter: Technical University of Denmark

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;o__Pirellulales;f__Pirellulaceae;g__Candidatus Anammoximicrobium;x__unclassified Candidatus Anammoximicrobium;s__Candidatus Anammoximicrobium sp.


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Beijerinckia sp. GAS462


ncbi_country: South Africa: Pretoria

ncbi_isolation_source: termite gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Halomonas sp. I1

ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_country: Australia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Technology, Sydney


ncbi_country: Israel

ncbi_isolation_source: rotted fruit from symptomatic plant

ncbi_organism_name: Paracidovorax citrulli

ncbi_submitter: Faculty of Agriculture, Food and Environment, The Hebrew University of Jerusalem


ncbi_organism_name: Sphingobacterium sp.

ncbi_submitter: Max Planck Institute for Biology


ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_country: USA: North Carolina

ncbi_isolation_source: blood

ncbi_strain_identifiers: NABI 478

ncbi_submitter: University of Texas Health Science Center - Houston


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Citrobacter sp. KTE30

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphingomicrobium sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Tsinghua University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Department of Clinical Laboratory, the Affiliated Suzhou Hospital of Nanjing Medical University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Campylobacter fetus

ncbi_submitter: chu de bordeaux


ncbi_organism_name: Bartonella sp. TT119HLJHH

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Liu et al. 2021)


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centre Hospitalier National et Universitaire de Fann


ncbi_organism_name: Planomicrobium okeanokoites

ncbi_strain_identifiers: CCM 320

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Allotamlana fucoidanivorans

ncbi_submitter: Shantou university


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13573

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: China Agricultural University


ncbi_submitter: Lawrence Berkeley National Laboratory


ncbi_organism_name: Aurantimonas manganoxydans SI85-9A1

ncbi_submitter: Graduate School of Life Sciences, Tohoku University


ncbi_isolation_source: human gut

ncbi_organism_name: Streptococcus equinus

ncbi_submitter: EMG


ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Mycolicibacterium porcinum

ncbi_submitter: National Jewish Health


ncbi_country: USA: Little Rock; AR

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Pseudomonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Sichuan

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 101

ncbi_organism_name: Staphylococcus chromogenes

ncbi_strain_identifiers: SNUC 6

ncbi_submitter: University of Calgary


ncbi_isolation_source: rumen

ncbi_organism_name: Acidaminococcaceae bacterium UBA2873

ncbi_submitter: University of Queensland


ncbi_organism_name: Erysipelotrichaceae bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0254R

ncbi_submitter: Broad Institute


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: South China Agricultural University


ncbi_country: Finland

ncbi_isolation_source: Olkiluoto

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: South Korea: Paju

ncbi_isolation_source: Stem of infected pepper plant

ncbi_organism_name: Clavibacter capsici

ncbi_submitter: KyungHee University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 7 after weanning

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Russia: Yessentuki mineral water deposit

ncbi_isolation_source: groundwater

ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: Proximal colon


ncbi_organism_name: Pseudomonas aeruginosa B3-1811

ncbi_submitter: DTU


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: human skin

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Pseudomonas kulmbachensis

ncbi_submitter: Federal University of Rio de Janeiro


ncbi_organism_name: Coxiellaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Halomonas sp. MC140

ncbi_submitter: UiT - The Arctic University of Norway


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Escherichia coli

ncbi_submitter: EMG


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_country: USA: Illinois

ncbi_isolation_source: swine manure storage pit

ncbi_organism_name: Erysipelotrichaceae bacterium MTC7

ncbi_submitter: USDA


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Oscillibacter sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Arachnia propionica


ncbi_country: USA: Florida

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: India: Vellore

ncbi_isolation_source: Respiratory specimen

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College, Vellore


ncbi_country: USA: MD

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Honduras

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Andrew Barnes's shared submissions


ncbi_country: Kenya

ncbi_isolation_source: not known

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: SC


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_isolation_source: Drinking water distribution network

ncbi_organism_name: Dyadobacter linearis

ncbi_strain_identifiers: CECT 9623

ncbi_submitter: University of Valencia, Spain


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: ICMP 5712

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada: Quebec city

ncbi_isolation_source: Harvested at the discharge of the grit chambers of the west wastewater treatment plant of Quebec City

ncbi_organism_name: Lachnotalea glycerini

ncbi_submitter: CHU de Quebec - Universite Laval


ncbi_country: China

ncbi_isolation_source: pickle

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Roseville; MN

ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Desulfobacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Antarctica: Vestfold Hills

ncbi_isolation_source: Lake Burton (Antarctic saline lagoon)

ncbi_organism_name: Maribacter sp. ACAM166

ncbi_submitter: University of Tasmania


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Treponema succinifaciens

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Thermoguttaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Spain

ncbi_isolation_source: Laboratory strain

ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: Dairy Institute of Asturias (IPLA)


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Candidatus Apopatosoma intestinale

ncbi_submitter: DTU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Apopatosoma;s__Candidatus Apopatosoma intestinale


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Succiniclasticum sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: bean seed

ncbi_organism_name: Xanthomonas sp. CFBP 8151

ncbi_strain_identifiers: CFBP 8151


ncbi_country: USA

ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: South Africa: Ngwelezane

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK-01-0067

ncbi_submitter: Broad Institute


ncbi_country: China: Nanjing

ncbi_organism_name: Rhizorhabdus dicambivorans

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: CA

ncbi_isolation_source: feces of cat named Danny from private home

ncbi_organism_name: Blautia sp.

ncbi_submitter: AnimalBiome


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-7601

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Russia: Moscow

ncbi_isolation_source: human feces

ncbi_organism_name: Ruthenibacterium lactatiformans

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 637

ncbi_submitter: Brigham Young University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus 21283


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-412-F02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Psychrobacter namhaensis

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_country: USA: Minnesota

ncbi_isolation_source: Rectal swab

ncbi_submitter: University of Minnesota


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Tissierellaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Atopobiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolate: new MAG-253

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: new MAG-253

ncbi_submitter: Micoorganism


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_organism_name: uncultured Candidatus Entotheonella sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Nitrospinota/Tectimicrobiota group;p__Candidatus Tectimicrobiota;c__Candidatus Entotheonellia;o__Candidatus Entotheonellales;f__Candidatus Entotheonellaceae;g__Candidatus Entotheonella;x__environmental samples;s__uncultured Candidatus Entotheonella sp.


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Petrimonas sulfuriphila

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Alistipes inops

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Gemella morbillorum

ncbi_submitter: EMG


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Jinhua Hospital of Zhejiang University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_country: USA: Bethesda

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: National Institute of Allergy and Infectious Disease


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Heads

ncbi_organism_name: Pantoea sp. S62

ncbi_submitter: USDA-ARS-Beltsville Sustainable Perennial Crops Laboratory


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Nannocystaceae bacterium


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Vavilov Institute of General Genetics


ncbi_country: Ireland

ncbi_isolation_source: broiler caeca 1

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_organism_name: Helicobacter bilis ATCC 51630

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Treponema porcinum

ncbi_submitter: AAFC


ncbi_country: Switzerland

ncbi_isolation_source: lower respiratory tract (LRT) secretions

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Bern


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lentisphaeria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Kenya

ncbi_organism_name: Prevotella sp. UBA7593


ncbi_country: USA: Illinois

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Illinois Institute of Technology


ncbi_country: Slovenia: pig farm Ihan

ncbi_isolation_source: feces from large intestine

ncbi_organism_name: Prevotella sp. P4-51

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_country: Australia

ncbi_isolation_source: Blood culture

ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_country: Venezuela

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Labilithrix sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: Pork

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: Australia: Brisbane

ncbi_organism_name: Prevotella histicola

ncbi_submitter: University of the Sunshine Coast


ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Australia: Sydney

ncbi_isolation_source: Coal seam formation water

ncbi_organism_name: Geovibrio ferrireducens

ncbi_submitter: CSIRO


ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Michigan


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: EBI


ncbi_organism_name: Castellaniella ginsengisoli

ncbi_submitter: The University of Georgia


ncbi_organism_name: Selenomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: China

ncbi_isolation_source: root nodules

ncbi_organism_name: Rhizobium anhuiense bv. trifolii

ncbi_submitter: Zhengzhou University of Light Industry


ncbi_organism_name: Phycicoccus duodecadis

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: India: Imphal

ncbi_isolation_source: fermented bamboo shoot of Northeast India

ncbi_organism_name: Lactobacillus acetotolerans

ncbi_submitter: IBSD


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Qinghai province

ncbi_organism_name: Brevundimonas sp. S30B

ncbi_submitter: Chinese center for disease control and prevention


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudomonas sp. MOIL14HWK12:I2

ncbi_submitter: JGI


ncbi_country: Japan:Izu-Bonin Arc; Suiyo Seamount

ncbi_organism_name: Desulfolithobacter dissulfuricans

ncbi_submitter: Kyoto University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: CARDIFF UNIVERSITY


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Arizona

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: The University of Arizona


ncbi_organism_name: Paracoccus cavernae

ncbi_strain_identifiers: CECT 8482

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: USA: Georgia

ncbi_isolation_source: Lake Lanier

ncbi_organism_name: Verrucomicrobia bacterium UBA3062

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA3062


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_organism_name: Streptomyces solicathayae

ncbi_strain_identifiers: HUAS YS2

ncbi_submitter: Hunan University of Arts and Science


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Taiwan: Chin-Lun hot spring; Taimali; Taitung

ncbi_isolation_source: water

ncbi_organism_name: Thermosynechococcus sp. CL-1

ncbi_submitter: Academia Sinica


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Prauserella alba

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Denmark: Aebeloe

ncbi_organism_name: Streptomyces albogriseolus

ncbi_submitter: Technical University of Denmark


ncbi_country: Netherlands

ncbi_isolation_source: Pig (faeces)

ncbi_organism_name: Escherichia coli FAP1

ncbi_submitter: University Medical Center Utrecht


ncbi_country: USA: PA

ncbi_isolation_source: Rectum

ncbi_organism_name: Escherichia coli


ncbi_country: Canada: Kingston

ncbi_isolation_source: Wastewater (Primary Effluent)

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Cloacimonadales bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__unclassified Candidatus Cloacimonadales;s__Candidatus Cloacimonadales bacterium


ncbi_country: Chile

ncbi_isolation_source: beef

ncbi_organism_name: Listeria monocytogenes


ncbi_isolation_source: Fecal samples

ncbi_submitter: INSERM UMR 1137


ncbi_assembly_name: Rumen uncultured genome RUG458

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Dorea formicigenerans

ncbi_submitter: Stanford University


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium var. 5-

ncbi_submitter: University of California at Davis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Beijing

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: China CDC


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Acidovorax delafieldii


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Cryomorphaceae bacterium


ncbi_country: Thailand: Chiang Mai

ncbi_isolation_source: food

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Qinghai

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: India

ncbi_organism_name: Stenotrophomonas sp. RAC2

ncbi_submitter: Raiganj University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Sweden

ncbi_isolation_source: industrial waters

ncbi_organism_name: Pelomonas aquatica

ncbi_submitter: University of Balearic Islands


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Cantabria; Altamira Cave

ncbi_isolation_source: Cave wall

ncbi_organism_name: Paenibacillus sp. CH40

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Southern Federal University


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Psychrobacter glaciei

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_submitter: Chouaib Doukkali University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Bartonella sp. CL34QHWL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Candidatus Rickettsiella isopodorum

ncbi_submitter: The Helmholtz Centre of Environmental Research


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces collinus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: USA

ncbi_isolation_source: CSF isolate from a less than 1 month old infant; 30 wk EGA with fatal meningitis

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nottingham Trent University, UK


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_country: Argentina

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal do Rio de Janeiro


ncbi_organism_name: Sulfurospirillum sp. hDNRA2

ncbi_submitter: KAIST


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Taiwan

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Panama


ncbi_organism_name: Aliarcobacter skirrowii

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Caulobacteraceae bacterium


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Yunnan University


ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Washington State

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_strain_identifiers: MRSP 1019

ncbi_submitter: Washington State University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laval University


ncbi_organism_name: Sphaerisporangium siamense

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces rimosus subsp. rimosus

ncbi_strain_identifiers: NRRL WC-3909

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: freshwater MAG --- Erken-D5_bin-0153

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Stenotrophomonas maltophilia


ncbi_country: Italy

ncbi_isolation_source: bulk tank milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: Ningxia; Yinchuan

ncbi_isolation_source: Intraperitoneal

ncbi_submitter: The Second Affiliated Hospital of Soochow University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: King Abdulaziz University


ncbi_country: USA: Salinas Valley; CA

ncbi_isolation_source: watershed

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: USDA Agricultural Research Service


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Angelakisella sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: Moraxella sp. K23

ncbi_submitter: Graduate School of Integrated Science for Life, Hiroshima University


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Vibrio anguillarum

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_assembly_name: freshwater MAG --- MJ120620A_bin-480

ncbi_organism_name: uncultured Sterolibacterium sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Methylotenera oryzisoli

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Gemella sp.


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: CSF or blood culture

ncbi_organism_name: Streptococcus suis

ncbi_submitter: ACADEMIC MEDICAL CENTER


ncbi_country: Spain: Salamanca

ncbi_isolation_source: stem tissue

ncbi_organism_name: Pseudomonas endophytica

ncbi_submitter: Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM


ncbi_organism_name: uncultured Alloprevotella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: addis ababa university


ncbi_assembly_name: IMG-taxon 2622736534 annotated assembly

ncbi_organism_name: Micromonospora marina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: Biology Centre CAS


ncbi_country: China: Chen mai

ncbi_isolation_source: stem

ncbi_organism_name: Streptomyces chengmaiensis

ncbi_submitter: Guilin Medical University


ncbi_country: USA: St. Louis Clyde watershed of Lake Superior

ncbi_isolation_source: Upshore outside the box

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Basel


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Japan: Okinawa

ncbi_isolation_source: Coral

ncbi_organism_name: Endozoicomonas sp. ONNA2

ncbi_submitter: Waseda University


ncbi_isolation_source: liver

ncbi_submitter: University of Pavia


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: University of Cologne


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA3849

ncbi_submitter: University of Queensland


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_organism_name: Thermoflexus hugenholtzii JAD2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Denmark

ncbi_isolation_source: Udder

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Technical University of Denmark, National Veterinary Institute


ncbi_country: China: Sichuan

ncbi_isolation_source: stool

ncbi_submitter: China CDC


ncbi_country: Romania: Bucharest

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Research Institute of University of Bucharest - ICUB


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Blackall

ncbi_isolation_source: grey microbial mat colonizing the waters emitted from the New Lorne Bore Well (RN 17263)

ncbi_organism_name: Fervidicola ferrireducens

ncbi_submitter: Bharat Patel


ncbi_country: USA

ncbi_isolation_source: egg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Phocaeicola vulgatus


ncbi_country: Svalbard

ncbi_isolation_source: seawater

ncbi_organism_name: Psychrobacter sp. NG25

ncbi_submitter: Shandong University


ncbi_country: USA: Oklahoma

ncbi_isolation_source: field isolate

ncbi_organism_name: Brucella abortus 90-0737

ncbi_submitter: Broad Institute


ncbi_organism_name: Spirosomataceae bacterium

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Netherlands

ncbi_isolation_source: Soup

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: NIZO Food Research BV


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Thomasclavelia spiroformis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Bombus pascuorum

ncbi_organism_name: Snodgrassella gandavensis

ncbi_submitter: Sciensano


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Australia

ncbi_isolation_source: beef

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC Lv96-7

ncbi_submitter: Shanghai Customs


ncbi_isolation_source: wound

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0936


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Pseudothermotoga sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: Caecum


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Child Health Research Foundation


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Gluconobacter cerinus

ncbi_submitter: Cornell University


ncbi_organism_name: Chryseobacterium sp. MYb328

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_isolation_source: diabetic foot ulcer sample 2

ncbi_organism_name: Corynebacterium sp. LK11

ncbi_submitter: UPenn


ncbi_assembly_name: MMC-glpO

ncbi_isolate: synthetic

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_submitter: SIB

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Day6-3_bin-203

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Succinatimonas sp.

ncbi_submitter: EMG


ncbi_assembly_name: IMG-taxon 2585427598 annotated assembly

ncbi_organism_name: Tessaracoccus bendigoensis DSM 12906

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: extraintestinal site

ncbi_submitter: University of Technology Sydney


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_isolation_source: Bran-feeding group superworm feces

ncbi_organism_name: Lactococcus taiwanensis

ncbi_submitter: The University of Queensland


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-1065

ncbi_organism_name: uncultured Candidatus Nemicrothrix sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Acidimicrobiia;o__Acidimicrobiales;f__Microthrixaceae;g__Candidatus Neomicrothrix;x__environmental samples;s__uncultured Candidatus Nemicrothrix sp.


ncbi_organism_name: Pusillimonas sp. UBA1915


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured bacterium


ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Polaromonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Rossellomorea sp. NPDC077527

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Affiliated Wenling Hospital


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Wyoming


ncbi_submitter: national health research institutes


ncbi_organism_name: uncultured Anaerolineae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Anaerolineae;x__environmental samples;s__uncultured Anaerolineae bacterium


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Faecousia sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_organism_name: Kaistiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Paris

ncbi_isolation_source: lab

ncbi_organism_name: Leptospira interrogans serovar Manilae

ncbi_strain_identifiers: mutant m77

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Kosakonia arachidis

ncbi_submitter: Kyungpook National University


ncbi_country: Arctic Ocean: offshore of Point Barrow; Alaska; USA

ncbi_organism_name: Shewanella sp. 11B5

ncbi_submitter: University of Alaska Fairbanks


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Xanthomonas euvesicatoria

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: Slovenia

ncbi_organism_name: Prevotella communis

ncbi_submitter: University of Ljubljana


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: IA

ncbi_isolation_source: bovine mammary gland

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Massachusetts General Hospital


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: OCS155 cluster bacterium AG-426-D23

ncbi_submitter: Massachusetts Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__unclassified Actinomycetes;x__marine Actinobacteria clade;s__OCS155 cluster bacterium AG-426-D23


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: CF Sputum

ncbi_organism_name: Bordetella genomosp. 6

ncbi_submitter: University of Michigan


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: USA: Hartford; CT

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Fluviicola sp.


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Roseburia faecis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: food

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: pig gut metagenome


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: South Korea: Cheonan

ncbi_isolation_source: sediment of a shallow stream

ncbi_organism_name: Flavihumibacter cheonanensis

ncbi_submitter: Shandong University of Technology


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Enterococcus faecium VRE1044

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_organism_name: Streptococcus sp. HSISS3

ncbi_submitter: Top Institute Food and Nutrition (TIFN)


ncbi_organism_name: Prochlorococcus sp. AG-436-J02

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: France: Quimper

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: University of Chicago


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium