ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Rhizobium sp. Root483D2

ncbi_submitter: Max Planck Institute for Plant Breeding Research


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: Florida; Summerland Key

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Greece: Thessaloniki

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: USA

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: US Food and Drug Administration Office of Regulatory Affairs


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: ARRIAM


ncbi_assembly_level: Scaffold

ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


gtdb_representative: t

ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Salmonella sp. NW752

ncbi_submitter: Sichuan University


ncbi_submitter: Nanjing agticultural university


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_country: Tanzania: Lake Tanganyika; Mahale

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: China: Xinjiang Uygur Autonomous region

ncbi_organism_name: Neorhizobium lilium

ncbi_refseq_category: reference genome

ncbi_submitter: Chinese Academy of Forestry

ncbi_type_material_designation: assembly from type material


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: Canada: Quebec

ncbi_isolation_source: Herd 313

ncbi_organism_name: Staphylococcus gallinarum

ncbi_strain_identifiers: SNUC 2094

ncbi_submitter: University of Calgary


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptomyces sp. NPDC101237


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Aggregatilineales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Wolfebacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;x__unclassified Candidatus Wolfebacteria;s__Candidatus Wolfebacteria bacterium


ncbi_country: Zaire

ncbi_isolation_source: Belgium Congo

ncbi_organism_name: Leptospira borgpetersenii

ncbi_submitter: Chinese National Human Genome Center at Shanghai


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Wolbachia endosymbiont of Brugia pahangi

ncbi_submitter: University of Maryland Baltimore


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: China: Beijing

ncbi_isolation_source: seed

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: University of Science and Technology Beijing


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus sp. AFS088145

ncbi_submitter: UNC Chapel Hill

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. AFS088145


ncbi_country: USA: Washington

ncbi_isolation_source: enrichment culture inoculated with soil

ncbi_organism_name: Pseudomonas sp. Sample_14

ncbi_submitter: Washington State University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: Germany: Bavaria

ncbi_isolation_source: high oxygen packaged beef soup meat (+ 3 CD; spoiled)

ncbi_organism_name: Dellaglioa algida

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Staphylococcus caprae

ncbi_submitter: Nimes University Hospital


ncbi_submitter: Toho University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Providencia stuartii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_assembly_name: IMG-taxon 2615840541 annotated assembly

ncbi_organism_name: Streptomyces sp. cf386

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: Georgia

ncbi_isolation_source: Matsoni fermented milk product

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: University of Ljubljana


ncbi_assembly_level: Chromosome

ncbi_country: Germany: Braunschweig

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: CAU


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Spain

ncbi_isolation_source: soil

ncbi_organism_name: Neorhizobium sp. T25_13

ncbi_submitter: Centre for Plant Biotechnology and Genomics UPM-INIA


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Persephonella sp.

ncbi_submitter: Portland State University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_country: USA: International Space Station

ncbi_isolation_source: air

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Chinese People's Liberation Army General Hospital


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: Arizona

ncbi_isolation_source: trach asp

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northern Arizona University


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mice gut

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Institut Pasteur


ncbi_country: USA

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: ISU 875

ncbi_submitter: USDA-ARS


ncbi_organism_name: Paracoccus simplex

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Nanjing University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Australia: Bundaberg

ncbi_isolation_source: fruit

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: La Trobe University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Belgium

ncbi_isolation_source: not known

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: Duncaniella muris


ncbi_country: Canada: Saskatchewan

ncbi_isolation_source: root nodule

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_organism_name: Anaerotignum faecicola


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Radboud University


ncbi_country: South Africa: Gauteng

ncbi_isolation_source: Minced beef from a butchery

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: Umea University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Sungiibacteriota;s__Candidatus Sungbacteria bacterium RIFCSPHIGHO2_01_FULL_51_22


ncbi_country: USA: PA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UNIVERSITY OF PENNSYLVANIA


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Micromonospora parva

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Ghana

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Tepidisphaeraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Metamycoplasma hominis

ncbi_submitter: Research Institute of Physico-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_isolation_source: metagenome


ncbi_country: India: Silagrant; Guwahati; Assam

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: ICAR Research Complex for NEH Region


ncbi_isolation_source: lake water

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: University of Groningen


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_organism_name: Alkalicoccobacillus gibsonii

ncbi_submitter: University of Alaska Anchorage


ncbi_organism_name: Paraburkholderia tropica

ncbi_submitter: Escuela Nacional de Estudios Superiores Unidad Leon, UNAM.


ncbi_organism_name: Burkholderia pseudomallei Smith 002025

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Antecubital fossa swab

ncbi_organism_name: Corynebacterium sanguinis

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanyang Technological University


ncbi_country: China

ncbi_isolation_source: sputum

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_isolation_source: soil

ncbi_organism_name: Listeria portnoyi

ncbi_submitter: Cornell University


ncbi_isolation_source: fresh feces

ncbi_organism_name: Proteus vulgaris

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Agrobacterium rosae

ncbi_submitter: University of British Columbia


ncbi_organism_name: Polynucleobacter sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: Alishewanella sp. d11

ncbi_submitter: Inner mongolia normal university


ncbi_organism_name: Salmonella sp. SC12

ncbi_submitter: Sichuan University


ncbi_organism_name: Cellulosimicrobium cellulans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Arthrospira sp. PCC 8006

ncbi_submitter: University of Gdansk


ncbi_organism_name: Lacticaseibacillus paracasei


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of East Anglia


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Leeuwenhoekiella sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Kitasatospora sp. NPDC090091


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rhizosphere of Barbacenia macrantha specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Republic of Khakassia; Shirinsky District

ncbi_isolation_source: Lake Shunet

ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Academia Sinica


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Georgia


ncbi_country: Singapore

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Toho University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Toho university


ncbi_country: USA: MD

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Mycobacterium sp.


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. GW704-F5

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_organism_name: Candidatus Geohydrothermomicrobium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Candidatus Geothermincolia;o__Candidatus Geothermincolales;f__Candidatus Anoxymicrobiaceae;g__Candidatus Geohydrothermomicrobium;x__unclassified Candidatus Geohydrothermomicrobium;s__Candidatus Geohydrothermomicrobium sp.


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Phycisphaerae bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Nosocomiicoccus sp.


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: Orange County; New York

ncbi_organism_name: Dickeya fangzhongdai

ncbi_submitter: Cornell University


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Syntrophobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Micrococcus sp. HOU01

ncbi_submitter: Hanoi Open University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Bangladesh

ncbi_isolation_source: fecal sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: Bangladesh Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: meat

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Aalborg University


ncbi_country: China: Hunan; Shuikoushan

ncbi_organism_name: Rhodoblastus sp.


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Marinobacterium sp. MBR-109

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Rothia sp. HMSC062H08

ncbi_submitter: The Genome Institute at Washington University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. HMSC062H08


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Sao Paulo - Faculty of Pharmacy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_submitter: University of Manitoba


ncbi_country: Germany

ncbi_isolation_source: Tissues

ncbi_organism_name: Staphylococcus aureus 12-ST01988

ncbi_submitter: Broad Institute


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-363-O16

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Desulfohalobiaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_organism_name: Shigella sp.

ncbi_submitter: University of Queensland


ncbi_country: USA

ncbi_organism_name: Enterobacter hormaechei subsp. oharae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. oharae


ncbi_isolation_source: cold seep

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: cattle fecal sample

ncbi_organism_name: Clostridium estertheticum

ncbi_submitter: University of Zurich


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_submitter: National University of Singapore


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Greece: Spata

ncbi_isolation_source: flowers; endophytic

ncbi_organism_name: Bacillus halotolerans

ncbi_submitter: Agricultural University of Athens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus halotolerans


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


gtdb_type_species_of_genus: t

ncbi_country: Japan:Tokyo; Ome; Tama river

ncbi_isolation_source: biofilm

ncbi_organism_name: Pseudaquabacterium pictum

ncbi_submitter: Biological Sciences, Tokyo Metropolitan University


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Wolbachia endosymbiont of Drosophila melanogaster

ncbi_submitter: institute of cytology and genetics of sb ras


ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: China: inner Mongolian

ncbi_isolation_source: culture medium

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_country: Italy: Alps

ncbi_isolation_source: gut

ncbi_organism_name: Pseudomonas sp. GL93

ncbi_submitter: University of Milan


ncbi_country: USA: NM; Lechuguilla Cave

ncbi_isolation_source: cave surface layer

ncbi_organism_name: Afipia massiliensis

ncbi_submitter: Monash University Malaysia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lentzea sokolovensis

ncbi_submitter: Biology Center, CAS


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pasteurii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_isolation_source: terrestrial

ncbi_organism_name: Dermacoccus sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces sp. NPDC127110

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Streptomyces sp. NPDC001792


ncbi_country: China: Guangdong

ncbi_isolation_source: feces

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter chenwenxiniae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_assembly_name: IMG-taxon 2622736431 annotated assembly

ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Duncaniella muris


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tsinghua University


ncbi_isolation_source: surface of Actinidia deliciosa

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Fukushima Medical University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Granulicella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Roseivirga sp. UBA7431


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Pseudobacillus badius

ncbi_submitter: National Biopesticide Engineering Technology Research Center, Hubei Academy of Agricultural Sciences


ncbi_organism_name: Streptomyces avermitilis


ncbi_country: Russia: Primorsky Krai

ncbi_isolation_source: chicken

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_assembly_name: freshwater MAG --- KR4_bin-0193

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Thiotrichales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: India

ncbi_isolation_source: Beach silt

ncbi_organism_name: Flexithrix dorotheae DSM 6795

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Flammeovirgaceae;g__Flexithrix;s__Flexithrix dorotheae;x__Flexithrix dorotheae DSM 6795


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_country: USA: California

ncbi_isolation_source: California sea lion

ncbi_organism_name: Campylobacter pinnipediorum subsp. pinnipediorum

ncbi_submitter: USDA, ARS, WRRC


ncbi_country: Italy

ncbi_organism_name: Brucella melitensis

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise "G. Caporale"


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Tannerella sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: Canada: Northern Alberta

ncbi_isolation_source: biofilm

ncbi_organism_name: Firmicutes bacterium UBA2290

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA2290


ncbi_organism_name: Parabacteroides merdae


ncbi_organism_name: Chlamydiales bacterium

ncbi_submitter: Sichuan University


ncbi_organism_name: Microgenomates group bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;x__unclassified Microgenomates group;s__Microgenomates group bacterium


ncbi_isolate: AOP42_A1_surf _bin _6

ncbi_organism_name: Corynebacterium variabile

ncbi_strain_identifiers: AOP42_A1_surf _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Streptomyces ardesiacus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: bacterium


ncbi_organism_name: Eubacterium limosum

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Burdwan


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Victivallales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: Australia: Adelaide Hills; SA

ncbi_organism_name: Opitutia bacterium


ncbi_submitter: Pennsylvania State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Moero


ncbi_organism_name: Saccharofermentanales bacterium


ncbi_country: USA:Alaska; North Slope; Schrader Bluff formation

ncbi_isolation_source: oil reservoir sample SB1

ncbi_submitter: Lawrence Berkeley National Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__candidate division TA06;s__candidate division TA06 bacterium 32_111


ncbi_isolation_source: Saloons Bayovar

ncbi_organism_name: Streptomyces sp. M92

ncbi_submitter: CIICAM


ncbi_organism_name: Enterobacter cancerogenus

ncbi_submitter: Northeast Forestry University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanghai

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agriculture University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Colombia: Cali

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Streptomyces sp. NPDC005708


ncbi_country: Benin

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: Institut de Recherche pour le Developpement


ncbi_organism_name: Escherichia coli

ncbi_submitter: ANSES Ploufragan


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: metagenome

ncbi_organism_name: Drancourtella sp. An57

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: nasopharynx


ncbi_country: Germany: Luebeck

ncbi_isolation_source: clinic

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universitaetsklinikum Schleswig Holstein Luebeck


ncbi_isolation_source: Other

ncbi_strain_identifiers: MRSA


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter mori

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: USDA 2677

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: USDA-ARS-USMARC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: China: Beijing

ncbi_isolation_source: vaginal

ncbi_organism_name: Fannyhessea vaginae

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Brazil: Belem

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Bacillus cereus group sp. BceL133

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL133


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospira sp. UBA3780

ncbi_submitter: University of Queensland


ncbi_country: Israel

ncbi_organism_name: Clavibacter michiganensis

ncbi_submitter: Agricultural Research Organization - Volcani Institute


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: SC


ncbi_country: Morocco: Rabat

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: MedBiotech laboratory, faculty of medicine and pharmacy, rabat/ Mohamed V university rabat


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA: Seattle

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_organism_name: uncultured Verrucomicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_submitter: Huzhou CDC


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Chryseobacterium sp. C39-AII1

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Food processing environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche Togo Rosati


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: Romania: Cekend

ncbi_isolation_source: landfill leachate-treating activated sludge bioreactor

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: ELTE Eotvos Lorand University


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital Muenster


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Tang lab


ncbi_assembly_name: Rumen uncultured genome RUG14742

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Spain: Almeria

ncbi_isolation_source: agricultural soil

ncbi_organism_name: Metabacillus halosaccharovorans

ncbi_submitter: Futureco Bioscience


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: granules from the full-scale anammox reactor of Dokhaven-Sluisjesdijk wastewater treatment plant; further enriched at TU Delft in a chemostat over two months prior to sampling

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: SciBear LLC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: China: Hainan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute


ncbi_country: USA: UT; Forest Service Road S out of Mantua

ncbi_isolation_source: aphid on Abies fraseri

ncbi_organism_name: Candidatus Ecksteinia adelgidicola

ncbi_submitter: University of Georgia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__Candidatus Ecksteinia;s__Candidatus Ecksteinia adelgidicola


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: The Maharaja Sayajirao University of Baroda


ncbi_country: Brazil

ncbi_isolation_source: tracheal secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_organism_name: uncultured Anaerostipes sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: microbial fuel cell

ncbi_organism_name: Paenirhodobacter ferrireducens

ncbi_strain_identifiers: CCTCC AB 2012026

ncbi_submitter: Research Institute of Forest Ecology Environment and Protection


ncbi_country: Norway

ncbi_isolation_source: Head ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: China: Shuozhou

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_organism_name: Tessaracoccus lapidicaptus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Pullorum


ncbi_country: USA

ncbi_isolation_source: Wound


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Papua New Guinea

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Konkuk University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_organism_name: Klebsiella variicola subsp. variicola

ncbi_submitter: Collection de l'Institut Pasteur

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella variicola;sb__Klebsiella variicola subsp. variicola


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Bangladesh

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh


ncbi_organism_name: uncultured Sulfurospirillum sp.


ncbi_organism_name: Bifidobacterium longum subsp. suis

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus SJOS6050

ncbi_submitter: Broad Institute


ncbi_submitter: Nottingham Trent University


ncbi_isolation_source: human gut

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: EMG


ncbi_isolation_source: animal

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Tennessee


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: huazhong agriculture university


ncbi_assembly_name: Rumen uncultured genome RUG11134

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- Umea1p1_bin-901

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Human

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_organism_name: Corynebacterium vitaeruminis Ga6A13

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Denmark

ncbi_isolation_source: kidney of farmed rainbow trout

ncbi_organism_name: Photobacterium damselae subsp. damselae

ncbi_submitter: Universidade de Santiago de Compostela


ncbi_isolation_source: Tissue DEEP HUMERAL MEMBRANE

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_country: United Kingdom

ncbi_isolation_source: Culture

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: microbial mat

ncbi_organism_name: Nostocales cyanobacterium PMM_0054

ncbi_submitter: University of Liege


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-4377

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Sulfurovaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: University of Saskatchewan


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 55C; pH 5.0

ncbi_organism_name: Heyndrickxia oleronia

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad de Concepcion


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Brazil: Belem


ncbi_organism_name: Bacillus anthracis

ncbi_strain_identifiers: delta ANR S3-12

ncbi_submitter: US Army CCDC Chemical Biological Center


ncbi_country: Turkey: Gluhane

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter ursingii ANC 3649

ncbi_submitter: Broad Institute


ncbi_organism_name: Prevotella merdae

ncbi_submitter: UIUC


ncbi_submitter: Saint-Petersburg Pasteur Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudoxanthomonas mexicana

ncbi_submitter: dalian university of technology


ncbi_country: Sweden

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Sphingopyxis sp.


ncbi_country: USA: CA

ncbi_isolation_source: environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Cellulosimicrobium sp. TH-20

ncbi_submitter: BGI


ncbi_country: Denmark: Odense NE

ncbi_isolation_source: activated sludge from OdNE_18-Q3-R46-58

ncbi_organism_name: Holophagales bacterium

ncbi_submitter: Aalborg University


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: Antarctica

ncbi_isolation_source: Lake Untersee

ncbi_organism_name: Arthrobacter sp. U41

ncbi_submitter: New England Biolabs


ncbi_organism_name: uncultured Acutalibacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: uncultured Neisseria sp.


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Ignavibacterium sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID5470

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: MRSN BI Team


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Edaphobacter sp.


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Alabama

ncbi_isolation_source: plaque

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: University of Queensland


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; >63 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Ohio

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG13609

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Candidatus Cloacimonadaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;x__unclassified Candidatus Cloacimonadaceae;s__Candidatus Cloacimonadaceae bacterium


ncbi_submitter: Lebanese American University Microbial Pathogenomics Lab


ncbi_organism_name: Enterobacter bugandensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Slovenia: Domzale

ncbi_isolation_source: Anaerobic bioreactor

ncbi_submitter: Biotechnical Faculty


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater lake Microcystis colony

ncbi_organism_name: Burkholderia sp.

ncbi_submitter: Universite de Montreal


ncbi_country: China: Qingdao

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Shandong University


ncbi_country: Russia: Moscow

ncbi_submitter: RCPCM


ncbi_assembly_name: freshwater MAG --- LJ-5-9m_bin-0110

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Melioribacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Dehalococcoidia bacterium UBA2141

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- YR_bin-1881

ncbi_organism_name: uncultured Methylophilaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Yale University


ncbi_country: USA: Virginia

ncbi_isolation_source: Piedmont

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Poland

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Newcastle University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium oral taxon 488


ncbi_country: Russia: Samara

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1429

ncbi_submitter: Broad Institute


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany: Aachen

ncbi_isolation_source: Feces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG10259

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oslo


ncbi_organism_name: Legionella maceachernii


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Canada: Rivire St-Jean; Gasp; Quebec

ncbi_isolation_source: Clams

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Otago


ncbi_organism_name: Candidatus Azophilus sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Candidatus Azotimanducaceae;g__Candidatus Azophilus;x__unclassified Candidatus Azophilus;s__Candidatus Azophilus sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus GD2010-052


ncbi_organism_name: Streptomyces sp. NRRL S-1521

ncbi_strain_identifiers: NRRL S-1521

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Spain

ncbi_organism_name: Micromonospora salmantinae

ncbi_submitter: Universidad de Salamanca


ncbi_organism_name: Olsenella timonensis

ncbi_submitter: URMITE


ncbi_organism_name: uncultured bacterium


ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolate: AOP43_F2_surf _bin _15

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_strain_identifiers: AOP43_F2_surf _bin _15

ncbi_submitter: Genoscope


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Granulosicoccus sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Comamonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Vicinamibacteria;o__Candidatus Marinacidobacterales;x__unclassified Candidatus Marinacidobacterales;s__Candidatus Marinacidobacterales bacterium


ncbi_organism_name: uncultured Candidatus Nanopelagicus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Nanopelagicus;x__environmental samples;s__uncultured Candidatus Nanopelagicus sp.


ncbi_organism_name: Miltoncostaeaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Staphylococcus arlettae

ncbi_submitter: Wageningen Bioveterinary Research


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Mexico: Guaymas Basin; Gulf of California

ncbi_isolation_source: deep-sea hydrothermal vent sediments from dive 4488_9 depth 4-6 cm

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Candidatus Kuenenia sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;x__environmental samples;s__uncultured Candidatus Kuenenia sp.


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: NASA Ames Research Center


ncbi_country: USA

ncbi_organism_name: Serratia marcescens

ncbi_submitter: California Department of Public Health


ncbi_organism_name: Salmonella sp. NW1282

ncbi_submitter: Sichuan University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Moraxellaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institutes of Health, Malaysia


ncbi_country: Thailand

ncbi_isolation_source: food

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: wenzhou medical university


ncbi_assembly_name: freshwater MAG --- MJ130617B_bin-673

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_country: Denmark: Hirtshals

ncbi_isolation_source: activated sludge from Hirt_18-Q3-R61-65

ncbi_organism_name: Micropruina sp.

ncbi_submitter: Aalborg University


ncbi_country: Austria

ncbi_isolation_source: intestinal tract

ncbi_submitter: IST Austria


ncbi_country: USA: Michigan

ncbi_isolation_source: Residence hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_country: Uganda

ncbi_organism_name: Mycolicibacterium vulneris

ncbi_submitter: JCVI


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI-Shenzhen


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Brazil

ncbi_isolation_source: Buffalo milk

ncbi_organism_name: Staphylococcus chromogenes

ncbi_submitter: Sao Paulo State University (Unesp), School of Agricultural and Veterinarian Sciences, Jaboticabal


ncbi_assembly_name: Rumen uncultured genome RUG14583

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: Mexico

ncbi_isolation_source: Human

ncbi_strain_identifiers: INSP 24

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Bacteroides stercoris

ncbi_submitter: Icahn School of Medicine


ncbi_submitter: University of Oxford


ncbi_country: USA: IN

ncbi_isolation_source: plant

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium UBA6397

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA6397


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: University of Parma


ncbi_organism_name: Anaerotignum lactatifermentans

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Weissella soli

ncbi_submitter: Yunnan Agricultural University


ncbi_assembly_name: freshwater MAG --- AM2_bin-1286

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater filtered through a 3.0 um filter

ncbi_organism_name: Bacteroidetes bacterium CG2_30_32_10

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium CG2_30_32_10


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: School of Allied Health Sciences


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_submitter: Hebei Provincial Centre for Disease Control and Prevention


ncbi_country: New Zealand

ncbi_isolation_source: rectal swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_country: Italy

ncbi_isolation_source: Broiler carcasses

ncbi_submitter: University of Bologna


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Sulfitobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Switzerland

ncbi_organism_name: Pigmentiphaga kullae

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Aquimarina sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Kenya: Kericho

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Makerere University


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Piura


ncbi_country: Canada

ncbi_submitter: Public Health Agency of Canada


ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Proteiniphilum sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_submitter: University of Chicago

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Blautia;s__Blautia massiliensis (ex Durand et al. 2017)


ncbi_country: South Korea:Cheonan-si

ncbi_isolation_source: fermented food

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Dankook University


ncbi_submitter: Shandong University


ncbi_country: Colombia: Tunja

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_assembly_name: freshwater MAG --- MJ130916A_bin-0386

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Hong Kong:Ngo Mei Chau

ncbi_organism_name: Roseobacter sp. HKCCD8809

ncbi_submitter: Chinese University of Hong Kong


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_organism_name: Rhodococcus sp. WB9

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. WB9


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Desulfatitalea sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Ornithinibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: GDUT


ncbi_organism_name: Anaerococcus hydrogenalis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Trichormus variabilis 9RC

ncbi_submitter: University of Missouri-St. Louis


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus T70161

ncbi_submitter: Broad Institute


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Leptospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Trichococcus sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Jiangsu Provincial People's Hospital


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Bdellovibrionales bacterium


ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Fusicatenibacter saccharivorans

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of California, Berkeley


ncbi_country: Canada: Crofton

ncbi_isolation_source: Woody debris ( hog fuel )

ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: University of British Columbia


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Zhejiang University


ncbi_submitter: Creighton University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: China: Beijing

ncbi_isolation_source: Vallisneria natans phyllosphere

ncbi_organism_name: Rhizobium sp. FKY42

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_strain_identifiers: Col 18-PUJ

ncbi_submitter: Pontificia Universidad Javeriana


ncbi_country: China: Shanghai

ncbi_isolation_source: hospital

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: USA: GA

ncbi_isolation_source: pond

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_country: China: Shaanxi

ncbi_isolation_source: anal swab

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: human blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Toho University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Pakistan: Faisalabad

ncbi_isolation_source: urine

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Sphingomonas aerolata

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Sericytochromatia bacterium

ncbi_submitter: Institute of Genetics and Developmental Biology, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;c__Candidatus Sericytochromatia;x__unclassified Candidatus Sericytochromatia;s__Candidatus Sericytochromatia bacterium


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: uncultured Olsenella sp.


ncbi_organism_name: Streptococcaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Opitutaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10346

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Human saliva

ncbi_organism_name: Veillonella dispar


ncbi_country: Australia

ncbi_isolation_source: feces

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: University of New South Wales


ncbi_submitter: The University of Texas at San Antonio


ncbi_country: USA: Ithaca(NY)

ncbi_organism_name: Stenotrophomonas indicatrix

ncbi_submitter: Cornell University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Parablautia intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pakistan

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cardiff University


ncbi_organism_name: uncultured Ruminiclostridium sp.


ncbi_organism_name: Streptomyces parvus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: Bloomington; Indiana

ncbi_isolation_source: sewage pond

ncbi_organism_name: Rhodobacter capsulatus

ncbi_submitter: Bellevue University


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Ancaster; Ontario

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC00288

ncbi_submitter: University of Toronto


ncbi_organism_name: Muribaculum intestinale


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides goldsteinii


ncbi_isolation_source: cattle

ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: uncultured bacterium


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. m2-21

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. m2-21


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Limnohabitans sp. Rim8

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Aggregatilinea sp.


ncbi_country: France

ncbi_isolation_source: baby blood culture

ncbi_submitter: UMR9198, Universite Paris Saclay

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: North Carolina State University; Microbiology Research Laboratory

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: North Carolina State University


ncbi_organism_name: uncultured Mucispirillum sp.


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ligilactobacillus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Cambridge; MA

ncbi_submitter: MIT


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: USDA


ncbi_country: USA: Cleveland

ncbi_isolation_source: cystic fibrosis isolate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: University of Alabama Birmingham


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_organism_name: Staphylococcus aureus


ncbi_isolate: CTENA1 L147

ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_strain_identifiers: CTENA1 L147

ncbi_submitter: University of Vienna


ncbi_country: Germany: Hamburg

ncbi_isolation_source: skin swab forehead

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Aarhus University


ncbi_organism_name: Mycobacterium sp. GA-1841

ncbi_submitter: JCVI


ncbi_country: Canada: Ontario

ncbi_isolation_source: stool

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Guelph


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Microbispora hainanensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Portugal: Lisbon

ncbi_isolation_source: vegetable

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Slovenia

ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_country: Germany: Berlin

ncbi_isolation_source: respiratory tract women (immunocompetent)

ncbi_organism_name: Mycobacterium heckeshornense

ncbi_submitter: Uppsala University


ncbi_organism_name: Meinhardsimonia xiamenensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tenacibaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Germany: Helmholtz-Centre for Infection Research

ncbi_isolation_source: laboratory

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: tolC-

ncbi_submitter: Helmholtz-Centre for Infection Research


ncbi_country: USA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Florida


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_assembly_name: Rumen uncultured genome RUG597

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Shouchella clausii

ncbi_submitter: Penn State


ncbi_country: France: Paris

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Swansea University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang Province, China


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: CEITEC VETUNI


ncbi_submitter: Universidade Federal do Rio de Janeiro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus dysgalactiae;sb__Streptococcus dysgalactiae subsp. equisimilis


ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_submitter: Teagasc


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China-Japan Union Hospital of Jilin University


ncbi_organism_name: Streptomyces sp. NPDC085929

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Salmonella sp. NW1190

ncbi_submitter: Sichuan University


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Tenacibaculum ascidiaceicola

ncbi_submitter: Bivalve Hatchery Health Consortium


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Australian Centre for Ecogenomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Antarctica: West Antarctic Peninsula

ncbi_isolation_source: marine water

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Palmer LTER


ncbi_assembly_name: freshwater MAG --- MJ_bin-1881

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Candidatus Enterousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;x__Alphaproteobacteria incertae sedis;g__Candidatus Enterousia;x__unclassified Candidatus Enterousia;s__Candidatus Enterousia sp.


ncbi_organism_name: uncultured Peptostreptococcus sp.

ncbi_submitter: EMG


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: USA: Florida; Summerland Key

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Stony Brook University


ncbi_strain_identifiers: SHEDF 79

ncbi_submitter: NATIONAL VETERINARY RESEARCH INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Offa


ncbi_country: France

ncbi_isolation_source: dairy product

ncbi_organism_name: Escherichia coli

ncbi_submitter: Anses


ncbi_isolation_source: Gracilaria blodgettii

ncbi_organism_name: Seonamhaeicola algicola

ncbi_submitter: Insititute of Oceanology, Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Liaocheng

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Liaocheng Center for Disease Control and Prevention


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Pyrinomonadaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_country: Germany: Freising

ncbi_isolation_source: Caecal content

ncbi_organism_name: Frisingicoccus caecimuris

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Haemophilus influenzae


ncbi_country: Italy

ncbi_organism_name: Bifidobacterium eulemuris

ncbi_submitter: University of Parma


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa: Pretoria

ncbi_submitter: University of Pretoria


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis OFXR-16

ncbi_submitter: Broad Institute


ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Enterococcus avium

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_organism_name: Ruegeria sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Rhodobiaceae bacterium UBA4205

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: ROBERT KOCH INSTITUT


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Boudabousia marimammalium

ncbi_submitter: China CDC


ncbi_country: Germany

ncbi_isolation_source: raw milk

ncbi_organism_name: Pseudomonas proteolytica

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Hopital Bicetre


ncbi_country: USA: Illinois

ncbi_organism_name: Bacillus cereus

ncbi_strain_identifiers: DSM 626

ncbi_submitter: University of Applied Sciences and Arts Western Switzerland hepia


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Huashan Hospital of Fudan University


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China

ncbi_isolation_source: rhizosphere soil of a desert xerophyte

ncbi_organism_name: Pelagerythrobacter rhizovicinus

ncbi_submitter: Lanzhou University


ncbi_country: USA: IA

ncbi_isolation_source: airsac

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Aureimonas glaciei

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_assembly_name: IMG-taxon 2684622907 annotated assembly

ncbi_organism_name: Hyunsoonleella jejuensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Candidatus Avelusimicrobium facis

ncbi_submitter: EMG


ncbi_country: Australia: Brisbane; Thorneside Wastewater Treatment Plant

ncbi_isolation_source: activated sludge

ncbi_organism_name: Chitinophagaceae bacterium UBA2375


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Cellvibrionaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Longibaculum sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 67 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Lunds Universitet


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Vulcanimicrobiota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Melbourne


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWF1_34_10


ncbi_country: USA: California

ncbi_isolation_source: rectal swab from healthy college student

ncbi_organism_name: Escherichia coli

ncbi_submitter: Santa Clara University