ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of East Anglia


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: University of Copenhagen


ncbi_organism_name: Clostridium cadaveris

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)

ncbi_type_material_designation: assembly from type material


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_level: Contig

ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: EMG


ncbi_organism_name: Litoribrevibacter euphylliae

ncbi_refseq_category: reference genome

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_assembly_level: Chromosome

ncbi_country: USA: North Carolina

ncbi_isolation_source: leaf

ncbi_organism_name: Paracidovorax avenae

ncbi_submitter: Michigan State University


ncbi_organism_name: Desulfomicrobium orale


ncbi_country: China

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus solitudinis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Russia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Florence


ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus durans

ncbi_submitter: University of Zurich


ncbi_genome_category: derived from single cell

ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Korea Polar Research Institute, Republic of Korea


ncbi_organism_name: Accumulibacter sp.

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;x__unclassified Candidatus Accumulibacter;s__Accumulibacter sp.


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: North West University


ncbi_organism_name: Flavobacterium collinsii

ncbi_submitter: Universite Laval


ncbi_organism_name: Anaerovoracaceae bacterium SGI.195

ncbi_submitter: University of Manitoba


ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: University of Minnesota


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur de la Guadeloupe


ncbi_organism_name: Hyphomonas sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: concordia university


ncbi_organism_name: Streptomyces xiamenensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Hydrogeniiclostridium mannosilyticum

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Hominenteromicrobium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA:California Solano

ncbi_isolation_source: Symptomatic leaf tissue

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: Cornell University


ncbi_assembly_name: freshwater MAG --- Ja1-D5_bin-059

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Austria: Linz

ncbi_isolation_source: Wound swab

ncbi_organism_name: Corynebacterium ulcerans

ncbi_submitter: AGES


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Actinomycetales bacterium

ncbi_submitter: Aalborg University


ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: Antarctica: Blood Falls; Taylor Glacier

ncbi_isolation_source: Subglacial Brine

ncbi_organism_name: Shewanella sp. BF02_Schw

ncbi_submitter: University of Tennessee, Knoxville


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Myxococcales bacterium UBA5297

ncbi_submitter: University of Queensland


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Australia: Boho South; VIC

ncbi_organism_name: Clostridiales bacterium


ncbi_country: Madagascar: Kirindy Forest

ncbi_isolation_source: oral cavity

ncbi_organism_name: Lactococcus sp. DD01

ncbi_submitter: University of Kaiserslautern


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Escherichia coli

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Massachusetts

ncbi_isolation_source: Sand filtrate

ncbi_organism_name: Candidatus Enterococcus myersii

ncbi_submitter: Broad Institute


ncbi_isolation_source: burned soil

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Manipal

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_organism_name: Bacteroidota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: South Korea: Seoul

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Seoul Metropolitan Government Research Institute of Public Health and Environment


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Colwellia sp.

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Cape Town Antimicrobial Stewardship Study Alliance


ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae CHS 75

ncbi_strain_identifiers: CHS 75

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 75


ncbi_country: Australia: Queensland

ncbi_isolation_source: urine

ncbi_submitter: The University of Queensland


ncbi_country: South Korea: Pocheon

ncbi_isolation_source: soil used for cultivating ginseng

ncbi_organism_name: Flavisolibacter ginsenosidimutans

ncbi_strain_identifiers: Gsoil 636

ncbi_submitter: Hankyong National University


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Clostridioides sp. ZZV14-6153

ncbi_submitter: Northern Arizona University


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: State Key Laboratory of Pathogen and Biosecurity


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: Trinidad and Tobago: Trinidad

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The University of The West Indies, St. Augustine


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Brandenburg; Erpe River

ncbi_isolation_source: urban river

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Caldatribacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;p__Candidatus Caldatribacteriota;x__unclassified Candidatus Caldatribacteriota;s__Candidatus Caldatribacteriota bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_assembly_name: Rumen uncultured genome RUG14669

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: East China Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Lake Erie; Sandusky Bay; Ohio

ncbi_isolation_source: enrichment culture of drinking water treatment residuals inoculated with Planktothrix agardhii

ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: The Ohio State University


ncbi_country: USA: Boston; MA

ncbi_isolation_source: tip

ncbi_organism_name: Staphylococcus aureus M0604

ncbi_submitter: Broad Institute


ncbi_isolation_source: environmental dairy facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_organism_name: Varibaculum sp.

ncbi_submitter: The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_country: Portugal: Leiria

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade de Aveiro


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Seattle

ncbi_isolation_source: urine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: uncultured Rhodoferax sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-249

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Blastocatellia bacterium

ncbi_strain_identifiers: new MAG-249

ncbi_submitter: Micoorganism


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Throat and nasal swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Stanford University


ncbi_country: Australia: WA; Badgingarra

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. B2-3-7

ncbi_submitter: Curtin University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Suzhou

ncbi_organism_name: Dysosmobacter acutus

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: USA: western arm Lake Superior

ncbi_isolation_source: freshwater cyanobacterial bloom

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of Minnesota Duluth


ncbi_organism_name: Arthrobacter sp. UYCu712

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Malaysia: Kelantan

ncbi_isolation_source: Pus

ncbi_submitter: INSTITUTE FOR MEDICAL RESEARCH


ncbi_country: Sudan

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: King Abdulaziz University


ncbi_country: South Africa:Cape Town

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_country: Germany

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_assembly_name: IMG-taxon 2708742385 annotated assembly

ncbi_organism_name: Corynebacterium pollutisoli

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: Eastern Antarctica; McMurdo Dry Valleys

ncbi_isolate: MDV bin108

ncbi_strain_identifiers: MDV bin108

ncbi_submitter: Monash University


ncbi_organism_name: Streptomyces sp. NPDC101733

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodoplanes sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Serratia sp. CY84334

ncbi_submitter: Beijing Chao-yang Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. CY84334


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Weifang People's Hospital


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella sp. s56042

ncbi_submitter: Zhejiang university


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_country: Brazil: Fortaleza

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Vet-LIRN-CVM-FDA


ncbi_organism_name: Catenibacterium mitsuokai

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bifidobacterium porcinum

ncbi_submitter: Veterinary Research Institute


ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: Chung-Ang university


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Kofleriaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: unknown

ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_organism_name: Ureaplasma parvum


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_submitter: University of Otago


ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:Zhejiang Province

ncbi_organism_name: Proteus mirabilis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Wilmar International Limited


ncbi_country: USA: La Porte; Indiana

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: Max Planck Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Lactococcus garvieae


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M034S1

ncbi_submitter: Universite de Montreal


ncbi_country: Germany: Hannover

ncbi_isolation_source: throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus cereus F65185

ncbi_submitter: Naval Medical Research Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus F65185


ncbi_organism_name: Pantoea endophytica


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Anaeromyxobacteraceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Peribacillus simplex

ncbi_submitter: Centre of Biotechnology of Sfax


ncbi_organism_name: uncultured Polynucleobacter sp.

ncbi_submitter: UNIVERSITY OF ZURICH


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Gastric biopsies

ncbi_organism_name: Helicobacter pylori FD423

ncbi_submitter: University of Malaya-Malaysian Genomics Resource Centre Berhad-University of New South Wales


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Firmicutes bacterium UBA4874

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA4874


ncbi_organism_name: Bacillus cereus MSX-D12

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus MSX-D12


ncbi_country: Australia: Adelaide

ncbi_isolation_source: respiratory tract

ncbi_submitter: University of Adelaide


ncbi_organism_name: Streptococcus agalactiae

ncbi_strain_identifiers: Pig 91

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: Belgium

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Universiteit Gent


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Bologna


ncbi_organism_name: Agrobacterium vitis

ncbi_submitter: Deakin University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Zhengzhou

ncbi_isolation_source: stool

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_country: Brazil: Ducke Reserve; AM

ncbi_isolation_source: Apterostigma fungus garden

ncbi_organism_name: Pantoea sp. Ap-870

ncbi_submitter: UW-Madison


ncbi_country: Norway

ncbi_isolation_source: Blood

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: SC


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Portugal: Algarve

ncbi_isolation_source: Sea cave

ncbi_organism_name: Shewanella sp. 1CM18E

ncbi_submitter: Instituto de Recursos Naturales y Agrobiologia


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Jatrophihabitantaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Desulfovibrio piger

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: South China Sea

ncbi_isolation_source: midgut

ncbi_organism_name: Mycoplasma sp. Bg1

ncbi_submitter: Sanya Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: Serbia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: DTU Bioinformatics


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Iraq

ncbi_organism_name: Saccharomonospora iraqiensis subsp. iraqiensis

ncbi_submitter: Joint Genome Institute


ncbi_submitter: University of Alabama Birmingham


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: seawater

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Ruminococcaceae bacterium UBA5312

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


gtdb_type_species_of_genus: t

ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_submitter: Aristotle University of Thessaloniki

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Leclercia;s__Leclercia adecarboxylata;x__Leclercia adecarboxylata ATCC 23216 = NBRC 102595


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Xinjiang

ncbi_organism_name: Pontibacter silvestris

ncbi_submitter: Institute of Applied Microbiology


ncbi_country: China: Nei Mongol Autonomous Region

ncbi_isolation_source: plant

ncbi_organism_name: Pectobacterium brasiliense

ncbi_submitter: Inner Mongolia Potato Engineering & Technology Research Center


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Brucella suis bv. 4 str. 40

ncbi_submitter: Smi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Brucellaceae;x__Brucella/Ochrobactrum group;g__Brucella;s__Brucella suis;x__Brucella suis bv. 4;x__Brucella suis bv. 4 str. 40


ncbi_organism_name: Curtobacterium sp. PhB115

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_assembly_name: Salmonella enterica enterica Namur

ncbi_isolation_source: Human stool

ncbi_submitter: Scientific Institut of Public Health

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Namur;x__Salmonella enterica subsp. enterica serovar Namur str. 05-2929


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Thailand: Lamphun

ncbi_isolation_source: rectal swab

ncbi_organism_name: Shigella sonnei

ncbi_submitter: JCVI


ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Cornell University


ncbi_country: Nigeria

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Cepheid


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_submitter: RCPCM


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: The University of Melbourne


ncbi_assembly_name: CCCM 108

ncbi_organism_name: Tenacibaculum maritimum

ncbi_strain_identifiers: CCCM 108

ncbi_submitter: The University of Queensland


ncbi_organism_name: uncultured Akkermansia sp.


ncbi_organism_name: Streptomyces halstedii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: uncultured Bifidobacterium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: International Space Station Surface: U.S. Lab

ncbi_submitter: J. Craig Venter Institute


ncbi_submitter: HUN-REN Veterinary Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Ohio


ncbi_organism_name: Candidatus Bandiella numerosa

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy: d__Bacteria;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Bandiella;s__Candidatus Bandiella numerosa


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Panama: Gamboa

ncbi_organism_name: Pseudonocardia sp. Ae505_Ps2

ncbi_submitter: University of East Anglia


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EBI


ncbi_country: USA: Massachusetts

ncbi_isolation_source: stem gall

ncbi_organism_name: Pseudomonas sp. MWU16-30316

ncbi_submitter: Midwestern University


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_organism_name: Silvanigrellaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Oyster Pond; MA

ncbi_isolation_source: Oyster Pond

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_country: China: Beijing

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University People's Hospital


ncbi_organism_name: Bacteroides faecis

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: New Mexico

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Texas Tech University


ncbi_organism_name: Allofournierella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Hungatella sp.


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Thailand

ncbi_isolation_source: Soil

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Leadbetterella byssophila

ncbi_submitter: Max Planck Institute for Biology


ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China:Danxia mountain of Hengyang

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Hunan Normal University


ncbi_isolation_source: rabbit tick

ncbi_organism_name: Spiroplasma mirum ATCC 29335

ncbi_strain_identifiers: SMCA

ncbi_submitter: Louisiana State Universtiy


ncbi_isolation_source: feces

ncbi_organism_name: Alistipes finegoldii


ncbi_country: China: Zhejiang

ncbi_isolation_source: pickled radish

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Poland

ncbi_isolation_source: lung

ncbi_organism_name: Bordetella avium

ncbi_submitter: amedes GmbH


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Phycisphaeraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Toho University


ncbi_country: USA: WA

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Granulicella sp.

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Sphingobacterium mizutaii


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Acetobacteraceae bacterium


ncbi_country: China: Wuhan

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Faculty of Medicine, Prince of Songkla University


ncbi_organism_name: Anaerolineaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhodopirellula bahusiensis

ncbi_submitter: University of Southern California


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Escherichia coli

ncbi_submitter: Division of Biomedical Food Research, NIHS


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Kribbella ginsengisoli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Aeribacillus sp. FSL K6-1121

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Aeribacillus;x__unclassified Aeribacillus;s__Aeribacillus sp. FSL K6-1121


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Prochlorococcus sp.

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: USA: New York; Auburn

ncbi_organism_name: Enterobacter sp. 725m/11

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: cell phone

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Sao Paulo


ncbi_country: United Kingdom: Bristol

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_organism_name: Dialister sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: South Korea

ncbi_isolation_source: obtained from DSMZ culture collection

ncbi_organism_name: Streptomyces rhizosphaericus

ncbi_submitter: Microbial Biotechnology Lab from Konkuk University


ncbi_country: Norway

ncbi_isolation_source: marine environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: IMR


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Achromobacter spanius

ncbi_submitter: University of Queensland


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_isolation_source: screen

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Streptomyces antimycoticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Canada: Quebec

ncbi_isolation_source: dairy milk

ncbi_organism_name: Staphylococcus sp. 11511212

ncbi_submitter: McGill University


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: surface water

ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: NAK 180

ncbi_submitter: Wageningen Plant Research


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Fimbriimonadales bacterium

ncbi_submitter: RIKEN-BRC


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Succinatimonas sp.


ncbi_country: USA:Alaska; North Slope; Schrader Bluff formation

ncbi_isolation_source: oil reservoir sample SB1

ncbi_organism_name: Petrotoga mobilis

ncbi_submitter: Lawrence Berkeley National Lab


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus MISS6020

ncbi_submitter: Broad Institute


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Canada: Toronto

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_organism_name: Ottowia sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Endotracheal aspirate

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Michigan


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N51313 v1.0

ncbi_country: USA: TN

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_country: Sweden: Vastra Gotaland; Gothenburg

ncbi_isolation_source: urine

ncbi_organism_name: Haemophilus sp. CCUG 60358

ncbi_submitter: TAILORED-Treatment project


ncbi_country: Switzerland: Ticino

ncbi_isolation_source: Lake Cadagno

ncbi_organism_name: Aeromonas sp. CA23

ncbi_submitter: University of Neuchatel, faculty of science


ncbi_organism_name: Campylobacter coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Japan

ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_isolation_source: retail chicken

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Holdemanella porci

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas soli

ncbi_submitter: University of Wisconsin-Milwaukee


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Enterococcus lactis


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Washington University in Saint Louis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: soil

ncbi_organism_name: Listeria immobilis

ncbi_submitter: Cornell University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Anaerolineaceae bacterium


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Academia Sinica


ncbi_organism_name: Lysinibacillus capsici

ncbi_submitter: Guangxi Minzu university


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: uncultured Mycobacterium sp.


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Aerosakkonema funiforme FACHB-1375

ncbi_submitter: South China Normal University


ncbi_assembly_name: freshwater MAG --- Umea1_bin-2011

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_submitter: The Medical City


ncbi_isolation_source: human feces metagenome


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: Norway: The DASAN; Korean Arctic Station; N-9173 Ny-Alesund

ncbi_isolation_source: arctic soil

ncbi_organism_name: Flavobacterium petrolei

ncbi_submitter: Konggi University


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: marine sediment

ncbi_organism_name: Alcaligenes aquatilis

ncbi_submitter: Universidad Tecnica Federico Santa Maria


ncbi_country: China: Wuliangsuhai; Inner Mongolia

ncbi_isolation_source: Migratory birds

ncbi_organism_name: Vibrio metschnikovii

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium CG10_big_fil_rev_8_21_14_0_10_45_20


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: University Hospital Frankfurt


ncbi_country: USA

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Texas at Austin


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Ceillac

ncbi_isolation_source: stream water

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Lille - ICV - UMRt BioEcoAgro

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: uncultured Aggregatibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Pseudomonas silesiensis

ncbi_submitter: groningen institute for evolutionary life sciences, university of groningen


ncbi_organism_name: Candidatus Promineifilaceae bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;x__unclassified Candidatus Promineifilaceae;s__Candidatus Promineifilaceae bacterium


ncbi_country: Argentina: Provincia de Rio Negro

ncbi_isolation_source: Pinot noir wine

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad Nacional de Quilmes


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Germany

ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. SS6

ncbi_submitter: University Hospital Dresden


ncbi_country: Kosovo

ncbi_organism_name: Brucella abortus F3/01-300

ncbi_submitter: Broad Institute


ncbi_country: United Kingdom:Scotland

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_submitter: Institute of Military Veterinary Medicine


ncbi_isolation_source: cloacal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Robert Koch Institute


ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_submitter: dtu national food institute


ncbi_assembly_name: IMG-taxon 2654588147 annotated assembly

ncbi_organism_name: Anoxybacillus pushchinoensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: King Abdullah University Science and Technology


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Spain: Loriguilla Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Synechococcus sp. L2F

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Czech Republic: Chriby mountains

ncbi_isolation_source: mud of a creek bank

ncbi_organism_name: Acinetobacter sp. ANC 4973

ncbi_submitter: National Institute of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: Drosophila melanogaster

ncbi_organism_name: Acetobacter oryzifermentans

ncbi_strain_identifiers: dm

ncbi_submitter: Boston University


ncbi_organism_name: Mammaliicoccus sciuri

ncbi_strain_identifiers: Gar CS 13

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: India: Kerala

ncbi_organism_name: Wolbachia sp. wMel_AMD

ncbi_submitter: Jaypee Institute of Information Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx


ncbi_country: New Zealand

ncbi_organism_name: Leptospira borgpetersenii serovar Ballum

ncbi_submitter: Massey University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Saint-Petersburg Pasteur Institute


ncbi_isolation_source: Chicken

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Taiwan

ncbi_isolation_source: pond

ncbi_organism_name: Curvibacter sp. CHRR-16

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Canada: Quebec

ncbi_isolation_source: swab

ncbi_submitter: Government of Canada


ncbi_isolate: metabat2_XCR1_HOM_6740_bwa.31 MAG

ncbi_strain_identifiers: metabat2_XCR1_HOM_6740_bwa.31 MAG

ncbi_submitter: the roslin institute (university of edinburgh)


ncbi_country: Kenya

ncbi_isolation_source: human stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Asaia bogorensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae UCI 26

ncbi_strain_identifiers: UCI 26

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae UCI 26


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Belgium: Liege

ncbi_isolation_source: milk samples

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: ANIWHA


ncbi_country: USA:Hawaii; Wailuku

ncbi_isolation_source: blood

ncbi_organism_name: Chryseobacterium indologenes

ncbi_submitter: Bacterial Special Pathogens Branch (CDC)


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Alteromonadaceae bacterium UBA7799

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Streptosporangium sp. CA-135522

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Pseudescherichia sp.


ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: water

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Xihua university


ncbi_organism_name: Streptomyces shenzhenensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: USA: University of Michigan Hospital; Ann Arbor; MI

ncbi_isolation_source: feces from healthy female

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: University of Michigan


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Butyricicoccus sp. AF86-03b2A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Canada: Lacombe

ncbi_organism_name: bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: uncultured Chitinophagaceae bacterium


ncbi_isolate: AOP1_H1_surf _bin _4

ncbi_organism_name: Psychrobacter sp.

ncbi_strain_identifiers: AOP1_H1_surf _bin _4

ncbi_submitter: Genoscope


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Citrobacter;x__Citrobacter freundii complex;x__unclassified Citrobacter freundii complex;s__Citrobacter freundii complex sp. 2024EL-00235


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: dtu national food institute


ncbi_submitter: Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_isolation_source: marine metagenome


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Xinjiang Agricultural University


ncbi_country: USA: Tucson; AZ

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Arizona


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Belize: Mesoamerican Barrier Reef; Carrie Bow Cay

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Stony Brook University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: China: Shandong

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Japan

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Morinaga Milk Industry


ncbi_country: South Korea

ncbi_submitter: Korea Zoonosis Research Institute


ncbi_organism_name: Streptomyces sp. NPDC079189

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Italy: Perugia

ncbi_isolation_source: Respiratory sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Genoa


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_submitter: Stanford University


ncbi_country: China: Xinjiang

ncbi_isolation_source: branches

ncbi_organism_name: Erwinia amylovora

ncbi_submitter: shihezi university


ncbi_country: China: Guangxi; Dashan

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: ascites

ncbi_submitter: ZhengZhou University


ncbi_country: China: Jinan

ncbi_isolation_source: Bumble bee gut

ncbi_organism_name: Lactobacillus sp.


ncbi_organism_name: Marinilactibacillus sp. XAAS-LB27

ncbi_submitter: Institute of Microbiology


ncbi_country: USA

ncbi_isolation_source: soil

ncbi_organism_name: Azotobacter chroococcum NCIMB 8003

ncbi_strain_identifiers: NCIMB 8003

ncbi_submitter: University of Reading


ncbi_country: Germany

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: USA: Tennessee

ncbi_isolation_source: Rectal

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA: Miami; Florida

ncbi_isolation_source: Water

ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: University of Florida


ncbi_organism_name: Mycolicibacterium moriokaense

ncbi_submitter: Uppsala University


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: University of Zurich


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: WTSI


ncbi_isolation_source: NEUS_F1 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Campylobacter ureolyticus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: University of Exeter


ncbi_country: Switzerland

ncbi_isolation_source: Cheese starter culture

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University of Lausanne


ncbi_country: Ireland: Northern region of ROI

ncbi_isolation_source: fecal material

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: UCD


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_country: USA: VA

ncbi_isolation_source: water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Ohio soil

ncbi_organism_name: Pseudomonas protegens

ncbi_strain_identifiers: Darke

ncbi_submitter: Ohio State university


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: SINTEF Industry


ncbi_country: China: Hangzhou

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Wound Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute for medical research


ncbi_organism_name: Streptomyces sp. NPDC001621

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: terrestrial

ncbi_organism_name: Brevundimonas sp.

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2884

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2884


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Alabama Birmingham


ncbi_country: Canada: Nunavut

ncbi_isolation_source: saline spring sediment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: McGill University


ncbi_country: China: Beijing

ncbi_organism_name: Paraburkholderia kururiensis subsp. kururiensis

ncbi_submitter: Institute of Agricultural Resources and Regional Planning,CAAS


ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_country: China:Zhejiang province

ncbi_isolation_source: probitic products

ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Zhejiang Tianke High Technology Development Co.Ltd.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Wisconsin; Madison

ncbi_isolation_source: Alar crease swab

ncbi_organism_name: Brachybacterium muris

ncbi_submitter: University of Wisconsin - Madison


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus agalactiae


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; low temperature high CO2

ncbi_submitter: Australian Institute of Marine Science


ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium GW2011_GWC1_37_12


ncbi_country: Canada: Chicoutimi

ncbi_isolation_source: sputum

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mordavella sp.


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: JMI Laboratories


ncbi_organism_name: Haemophilus paraphrohaemolyticus


ncbi_organism_name: Epilithonimonas hominis


ncbi_isolation_source: plant litter

ncbi_organism_name: Kineosporia babensis

ncbi_submitter: Chulalongkorn University


ncbi_country: China: Guizhou

ncbi_isolation_source: soil from karst cave

ncbi_organism_name: Deinococcus cavernae

ncbi_submitter: Chinese Academy of Sciences


ncbi_country: Thailand

ncbi_isolation_source: pus

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: Russia: Moscow

ncbi_isolation_source: laboratory reactor

ncbi_organism_name: Azospirillum doebereinerae

ncbi_submitter: BIOFORTE-LAB


ncbi_country: China: Harbin

ncbi_isolation_source: soil

ncbi_organism_name: Massilia cellulosiltytica

ncbi_submitter: college of life science


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Streptomyces sp. bgisy154

ncbi_submitter: BGI Research


ncbi_organism_name: Salmonella sp. NW311

ncbi_submitter: Sichuan University


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Paracoccus sp. (in: a-proteobacteria)

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rhodobacterales;f__Paracoccaceae;g__Paracoccus;x__unclassified Paracoccus (in: a-proteobacteria);s__Paracoccus sp. (in: a-proteobacteria)


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Singapore Food Agency


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Seoul National University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_assembly_name: freshwater MAG --- Umea1_bin-1403

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: human stool

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Waterloo


ncbi_country: South Korea

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Spirosoma sp. KUDC1026

ncbi_submitter: Kyungpook National University


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: bay water spring sample 30 PSU in less than .8 micron size fraction

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Aliiroseovarius zhejiangensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Chryseobacterium daeguense DSM 19388

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Weeksellaceae;x__Chryseobacterium group;g__Chryseobacterium;s__Chryseobacterium daeguense;x__Chryseobacterium daeguense DSM 19388


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8818

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Christensenella sp.

ncbi_submitter: University of Iowa


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Achromobacter xylosoxidans A8

ncbi_submitter: Institute of Molecular Genetics, Academy of Sciences of the Czech Republic


ncbi_organism_name: Prevotellamassilia sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Turkey: Adana

ncbi_isolation_source: Nursery

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: University of Toronto Mississauga

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Poamoho; Hawaii

ncbi_isolation_source: biochar-amended oxisol soil plot 3

ncbi_organism_name: Cupriavidus sp.

ncbi_submitter: Arizona State University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: Rumen uncultured genome RUG10051

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides sp. M10

ncbi_submitter: WFCC-MRCEN World Data Centre for Microoganisms(WDCM)


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rubrobacter xylanophilus DSM 9941

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: EMG


ncbi_country: USA: NC

ncbi_isolation_source: plant core

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: India: Chennai

ncbi_isolation_source: itra-abdominal tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: Denmark: Hjorring

ncbi_isolation_source: activated sludge from Hjor_18-Q3-R7-51

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: Lop Nur salt lake

ncbi_organism_name: Litchfieldella xinjiangensis

ncbi_submitter: The Second Institute of Oceanography, State Oceanic Administration


ncbi_isolation_source: metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: The East China Sea

ncbi_isolation_source: oxic surface sediment

ncbi_organism_name: Oceanospirillales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Mexico

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhizobium calliandrae

ncbi_submitter: Empresa Brasileira de Pesquisa Agropecuaria


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Dog

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: concordia university


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: India:Bhimtal; Bhimtal Lake

ncbi_isolation_source: water

ncbi_organism_name: Fictibacillus phosphorivorans

ncbi_strain_identifiers: DBL 17U12

ncbi_submitter: ICAR-Directorate of Coldwater Fisheries Research


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: France

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: Australia

ncbi_organism_name: Mesomycoplasma ovipneumoniae ATCC 29419

ncbi_submitter: Institute of Microbiology


ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: orthopedic device (ODRI) sonication fluid

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Universidade Federal de Sao Paulo (UNIFESP)


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Gloeomargarita sp. DG_1_5_bins_55

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: Tohoku univ.


ncbi_country: United Kingdom:England

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: ROSLIN


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Kalgoorlie

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: University of Western Australia


ncbi_assembly_name: freshwater MAG --- MJ-2014_bin-2619

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-2267

ncbi_organism_name: Candidatus Collierbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Collieribacteriota;x__unclassified Candidatus Collierbacteria;s__Candidatus Collierbacteria bacterium


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Lactobacillus intestinalis


ncbi_country: China: Guangdong; Daobaoshan

ncbi_isolation_source: sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Malaysia

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Monash University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: France: Montiers-sur-Saulx forest

ncbi_isolation_source: grain of soil from rhizosphere; lateral root 2

ncbi_organism_name: Streptomyces sp. RLA2-12

ncbi_submitter: Universite de Lorraine - Institut National de la Recherche Agronomique


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: P2 JHB X

ncbi_submitter: University of Pretoria


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: USA: California; Alameda County

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Opitutales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Peptoniphilus duerdenii

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China: Sichuan

ncbi_isolation_source: cattle farm

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: sichuan university


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: McGill University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China

ncbi_isolate: human Intestinal

ncbi_organism_name: Parabacteroides distasonis

ncbi_strain_identifiers: human Intestinal;F1-28

ncbi_submitter: Ocean University of China


ncbi_organism_name: Lacticaseibacillus paracasei NRIC 1981

ncbi_strain_identifiers: NRIC 1981

ncbi_submitter: Tokyo University of Agriculture


ncbi_country: United Kingdom: Aberdeen

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Leicester


ncbi_isolation_source: wastewater

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Yangzhou university


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: eye

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: spacecraft surface

ncbi_organism_name: Mesobacillus maritimus

ncbi_submitter: Jet Propulsion Laboratory


ncbi_assembly_name: IMG-taxon 2687453681 annotated assembly

ncbi_organism_name: Variovorax sp. PDC80

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Mali

ncbi_isolation_source: fermented cow milk

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Brigham Young University


ncbi_country: USA: WA

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: University of Washington


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Congzhengia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Nanjing University


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolate: AOP14_E2_surf _bin _14

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP14_E2_surf _bin _14

ncbi_submitter: Genoscope


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Hoylesella shahii

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_organism_name: uncultured Chryseobacterium sp.


ncbi_submitter: Don State Technical University


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces sp. NBC_00147

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudonocardiaceae bacterium


ncbi_organism_name: Candidatus Kaiserbacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;x__unclassified Candidatus Kaiserbacteria;s__Candidatus Kaiserbacteria bacterium


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: National Institute of Oceanography and Fisheries


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_submitter: Aalborg University


ncbi_organism_name: uncultured Acidimicrobiales bacterium


ncbi_organism_name: Amycolatopsis tucumanensis

ncbi_submitter: BGI Research


ncbi_organism_name: bacterium

ncbi_submitter: Ghent University


ncbi_assembly_name: freshwater MAG --- Loc080925-4m_bin-0530

ncbi_submitter: BILS


ncbi_organism_name: Mesotoga prima

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Germany: Goettingen

ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_submitter: King Abdullah International Medical Research Center (KAIMRC)


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_isolate: Stool culture

ncbi_organism_name: Shigella sonnei

ncbi_strain_identifiers: Stool culture

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Sutterella sp.


ncbi_country: Burkina Faso

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: Bronchial secretions

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: UCIBIO/REQUIMTE, Laboratory of Bacteriology, Faculty of Pharmacy, University of Porto


ncbi_country: USA: Texas

ncbi_isolation_source: feces

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gaminara


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Croceitalea sp.

ncbi_submitter: marine college, shandong university


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Halomonas sp.

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: USA: Baltimore

ncbi_isolation_source: patient fluids

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Johns Hopkins University


ncbi_organism_name: Holophagales bacterium

ncbi_submitter: EPFL


ncbi_country: Sweden

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_submitter: Health Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: China: Anhui; Maanshan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidisphaera sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Hong Kong

ncbi_isolation_source: enrichment culture of activated sludge with high heavy metal concentration

ncbi_organism_name: Cupriavidus sp. HMR-1

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Marinovum algicola

ncbi_submitter: EMG


ncbi_country: USA: Kansas

ncbi_isolation_source: corn field in Kansas

ncbi_organism_name: Xanthomonas vasicola pv. vasculorum

ncbi_submitter: Kansas State University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Massachusetts Institute of Technology


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: Colon

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Octadecabacter sp.

ncbi_submitter: Yantai University


ncbi_organism_name: [Clostridium] citroniae WAL-19142

ncbi_submitter: Broad Institute


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_organism_name: Algoriphagus sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Pontiella sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Akkermansiaceae bacterium


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Treponema sp.

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Bacillus cereus

ncbi_submitter: Johns Hopkins Applied Physics Lab


ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Magnetovibrio sp.


ncbi_country: Malawi: Lilongwe

ncbi_isolation_source: pus

ncbi_organism_name: Escherichia coli

ncbi_submitter: NORHED grant


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Nomurabacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;x__unclassified Candidatus Nomurabacteria;s__Candidatus Nomurabacteria bacterium


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: China: Lop Nor region; Xinjiang province

ncbi_isolation_source: rhizophere of Tamarisk tree

ncbi_organism_name: Allosalinactinospora lopnorensis

ncbi_submitter: University of Macau


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0060


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Kenya Medical Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Helicobacter pylori HP250BFiV

ncbi_submitter: Washington University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: PA

ncbi_isolation_source: environmental non-food-contact surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: University of Zurich


ncbi_country: Australia: WA; Canna

ncbi_isolation_source: soil

ncbi_organism_name: Mesorhizobium sp. Ca11

ncbi_submitter: Curtin University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: SC


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088


ncbi_country: China: Nanjing

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Children's Hospital of Nanjing Medical University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Tang lab