ncbi_country: Ethiopia

ncbi_organism_name: Mycoplasma mycoides subsp. capri

ncbi_strain_identifiers: IVB-X

ncbi_submitter: University of Bern

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma mycoides;sb__Mycoplasma mycoides subsp. capri


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_representation: full

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Dorea sp.


ncbi_assembly_level: Contig

ncbi_organism_name: Escherichia coli

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: New York City

ncbi_isolation_source: respiratory

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: NYU Grossman School of Medicine


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_submitter: Sichuan University


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: Gallintestinimicrobium sp.

ncbi_submitter: Washington University in Saint Louis


gtdb_representative: t

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Schlesneria sphaerica

ncbi_refseq_category: reference genome

ncbi_submitter: Research Center of Biotechnology of RAS

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Thiofilum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Kitasatospora cinereorecta

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Fervidobacterium sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Shinella sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Oliverpabstia sp.


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Ruminococcus sp.


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridium perfringens SM101

ncbi_submitter: TIGR


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Waterloo


ncbi_country: USA: Ohio

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: AIMST University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Canada: British Columbia; Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: McGill University and Genome Quebec Innovation Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Salinisphaera sp. UBA1016

ncbi_submitter: University of Queensland


ncbi_isolation_source: human skin

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: NIH/NHGRI


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas sp. AS012707

ncbi_submitter: Ares Genetics


ncbi_organism_name: Bacteroides acidifaciens


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Candidatus Microgenomates bacterium

ncbi_submitter: Ecole Centrale de Lyon

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Microgenomatota;x__unclassified Candidatus Microgenomates;s__Candidatus Microgenomates bacterium


ncbi_organism_name: Streptomyces sp. NBC_01278

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: National Yang Ming Chiao Tung University


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Cord blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of Malaya


ncbi_organism_name: Nocardia sp. NBC_01730


ncbi_country: Japan

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Yonsei University


ncbi_isolation_source: vaginal metagenome

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_assembly_name: Rumen uncultured genome RUG12771

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Bacillus cereus group sp. FL70

ncbi_submitter: Korea Food Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. FL70


ncbi_country: Dominican Republic: Santo Domingo

ncbi_isolation_source: Isabela River

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: INTEC-UFPA


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;x__unclassified Candidatus Polarisedimenticolia;s__Candidatus Polarisedimenticolia bacterium


ncbi_organism_name: Streptomyces sp. NPDC051180

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: sheep gut metagenome


ncbi_organism_name: uncultured Tidjanibacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Human feces

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: The University of Tokyo


ncbi_organism_name: [Clostridium] cellulosi

ncbi_submitter: CEBITEC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Germany: Zoo Saarbruecken

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Center for Bioinformatics


ncbi_isolation_source: oral cavity

ncbi_organism_name: Streptococcus agalactiae ATCC 13813

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA:New York City

ncbi_isolation_source: wood

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese CDC


ncbi_country: China: Wuxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: School of Food, Jiangnan University


ncbi_country: USA: Santa Barbara Zoo

ncbi_submitter: University of California, Santa Barbara


ncbi_country: China: Shaanxi

ncbi_isolation_source: farm

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Mogibacterium diversum

ncbi_submitter: EMG


ncbi_country: Germany

ncbi_isolation_source: dung bettles

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium CG_4_9_14_3_um_filter_45_14


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_organism_name: Succinimonas sp.


ncbi_organism_name: Balneolaceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_country: China: Sichuan

ncbi_isolation_source: chicken

ncbi_submitter: Sichuan University


ncbi_assembly_name: freshwater MAG --- Umea_bin-00280

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Mucilaginibacter sp.

ncbi_submitter: BILS


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University


ncbi_country: USA: WA

ncbi_organism_name: Cellulomonas flavigena

ncbi_submitter: University of Washington


ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Cambodia

ncbi_isolation_source: blood

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Yersinia pestis C1975003

ncbi_submitter: Beijing Genomics Institute


ncbi_country: Taiwan: Tainan; An-Shun

ncbi_isolation_source: roots

ncbi_organism_name: Photobacterium halotolerans

ncbi_submitter: National Chung Hsing University


ncbi_organism_name: Zobellella aerophila

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Dehalococcoides mccartyi

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: FL

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Enterobacter cloacae complex sp. IR5376

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5376


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Mt.Diaoluoshan;Hainan

ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: PROTAGlug

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_assembly_name: GS De Novo Assembly

ncbi_country: India

ncbi_isolation_source: nitro-aromatics containing industrial waste water

ncbi_organism_name: Klebsiella pneumoniae EGD-HP19-C

ncbi_submitter: National Environmental Engineering Research Institute-CSIR


ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nantong university


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_submitter: Hospital Ramon y Cajal


ncbi_country: China: Yunnan Province

ncbi_isolation_source: hot spring

ncbi_organism_name: Erythrobacteraceae bacterium CFH 75059

ncbi_submitter: Henan Normal University


ncbi_country: Spain: Galacia

ncbi_isolation_source: Kidney

ncbi_organism_name: Streptococcus parauberis

ncbi_submitter: Norfolk State University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Luminiphilus sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Streptococcus mitis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Mexico: comarca lagunera

ncbi_isolation_source: milk sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: consejo nacional de ciencia y tecnologia


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: China: Qinghai

ncbi_isolation_source: soil

ncbi_organism_name: Dyadobacter sp. CY312

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Rhizobium brockwellii

ncbi_submitter: The University of Sheffield


ncbi_organism_name: Adlercreutzia equolifaciens subsp. celatus


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Finnish Food Authority


ncbi_organism_name: Pseudocitrobacter faecalis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Sorangium sp. So ce1000

ncbi_strain_identifiers: So ce1000

ncbi_submitter: Leibniz-Institute DSMZ - German Collection of Microorganisms and Cell Cultures

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__Polyangia;o__Polyangiales;f__Polyangiaceae;g__Sorangium;x__unclassified Sorangium;s__Sorangium sp. So ce1000


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Marques de Valdecilla


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: CDC of Sichuan Province


ncbi_organism_name: Streptomyces sp. SudanB135_2055

ncbi_submitter: Swiss Institute of Bioinformatics, Switzerland


ncbi_organism_name: Bacillus cereus group sp. BceL167

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL167


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: Freie Universitat Berlin


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Anhui; Tongling

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Ocean University of China


ncbi_country: China: Guangxi; Longshenao

ncbi_organism_name: Deinococcales bacterium


ncbi_organism_name: Bacillus safensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Shapirobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Shapironibacteriota;x__unclassified Candidatus Shapirobacteria;s__Candidatus Shapirobacteria bacterium


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: treated wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Russia: Moscow

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Canada: BC; Agassiz

ncbi_isolation_source: ceaca

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: McGill University and Genome Quebec Innovation Centre


ncbi_country: USA: MN

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_country: USA: Texas;Huntsville

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Shewanella sp.


ncbi_organism_name: Providencia sp. PROV008

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Seawater

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Harbin Institute of Technology


ncbi_country: Spain: Seville

ncbi_isolation_source: Balb/C mouse gall bladder

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Universidad de Sevilla


ncbi_country: USA: Maryland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Streptococcus sciuri

ncbi_submitter: US FDA


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Lund University


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Segatella intestinihominis

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University College Cork


ncbi_assembly_level: Chromosome

ncbi_country: Ghana: Densuso

ncbi_isolation_source: papillomatous lesion

ncbi_organism_name: Treponema pallidum subsp. pertenue

ncbi_submitter: Masaryk University, Faculty of Medicine


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-591

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Holophagaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: USA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni 51494


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp. AF19-12LB

ncbi_submitter: BGI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. AF19-12LB


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium RIFOXYC2_FULL_39_11


ncbi_country: Chad

ncbi_isolation_source: soil

ncbi_organism_name: Sinomonas gamaensis

ncbi_submitter: School of life science


ncbi_organism_name: Roseburia sp. AF12-17LB

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: USA: PA

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA ARS


ncbi_country: USA: New York

ncbi_isolation_source: stool

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Germany

ncbi_isolation_source: intestine

ncbi_organism_name: Clostridium sp. ZBS2

ncbi_submitter: KULeuven


ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_country: USA: MT

ncbi_isolation_source: lung

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Changsha

ncbi_submitter: Xiangya hospital, Central South University


ncbi_country: Malawi

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Yunnan

ncbi_isolation_source: vegetable

ncbi_organism_name: Lactiplantibacillus pentosus

ncbi_submitter: Kunming University of Science and Technology


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_country: USA: Hawaii

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Centers of Disease Control


ncbi_submitter: University of Georgia


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Acinetobacter junii

ncbi_submitter: Zhejiang University


ncbi_submitter: Sichuan University


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: agarose 40-100 m particle (artificial) late colonization

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Candidatus Limisoma sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Limisoma;x__unclassified Candidatus Limisoma;s__Candidatus Limisoma sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 47P9

ncbi_submitter: Broad Institute


ncbi_organism_name: Rhodanobacteraceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bradyrhizobium japonicum 22

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Macrococcoides caseolyticum

ncbi_submitter: Teagasc Food research


ncbi_country: Japan

ncbi_isolation_source: Manju-moto (dough of wheat flour with Koji)

ncbi_organism_name: Leuconostoc citreum

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: feces

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Toho university


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: National laboratory for health, environment and food


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA

ncbi_isolation_source: constructed wetland sediment

ncbi_organism_name: Desulfosporosinus youngiae DSM 17734

ncbi_submitter: JGI


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: uncultured Armatimonadia bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 64 year old man who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolate: kpnS

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: kpnS

ncbi_submitter: AIT AUSTRIAN INSTITUTE OF TECHNOLOGY


ncbi_organism_name: Shewanella khirikhana

ncbi_submitter: Guangdong Ocean University


ncbi_organism_name: Pseudoalteromonas tetraodonis

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Ghana: Nyankpala site 2

ncbi_isolation_source: Kantong

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: University of Copenhagen


ncbi_assembly_name: freshwater MAG --- Loc081215-8m_bin-1747

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Thalassospira sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Limisphaerales bacterium


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Ralstonia syzygii

ncbi_submitter: Universidade Federal de Vicosa


ncbi_organism_name: Treponema sp. OMZ 805

ncbi_strain_identifiers: OMZ 805

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: Institute of Aquaculture, University of Stirling, Stirling, UK


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: freshwater MAG --- Umea2_bin-0874

ncbi_organism_name: uncultured Lentisphaeria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;c__Lentisphaeria;x__environmental samples;s__uncultured Lentisphaeria bacterium


ncbi_country: Israel: Negev Desert

ncbi_isolate: NEG bin29

ncbi_isolation_source: soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_strain_identifiers: NEG bin29

ncbi_submitter: Monash University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Institut Pasteur de Dakar


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Water column of Lake Zurich; Switzerland

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: Biology Centre CAS, Institute of Hydrobiology


ncbi_isolation_source: disinfectant-free drinking water; site 5

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Glasgow


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human feces metagenome


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Serbia

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_organism_name: Candidatus Ventricola sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Ventricola;x__unclassified Candidatus Ventricola;s__Candidatus Ventricola sp.


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Canada: Syncrude tailings pond; Wood Buffalo; Alberta

ncbi_isolation_source: waste water

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__unclassified Verrucomicrobiia;s__Verrucomicrobia subdivision 3 bacterium UBA6082


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Proteus vulgaris


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_isolation_source: pig gut metagenome


ncbi_country: Colombia: Amazonas

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio fluvialis

ncbi_submitter: Center for Bioinformatics and Computational Biology of Colombia BIOS


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: NIZO food research


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. HMSC070B10

ncbi_submitter: The Genome Institute at Washington University


ncbi_isolation_source: Epidemic materials

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Yangzhou University


ncbi_organism_name: Morganella morganii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Ares Genetics


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: New Zealand

ncbi_isolation_source: Shoot

ncbi_organism_name: Xanthomonas sp. GW

ncbi_strain_identifiers: GW

ncbi_submitter: AgriBio


ncbi_country: United Kingdom

ncbi_isolation_source: faeces

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: SC


ncbi_country: USA: Maine

ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: University of Florida


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: Spain: Barcelona

ncbi_isolation_source: rectal smear

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitari Vall d'Hebron


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_isolation_source: Submandibular lymph node abscess

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kazan Federal University


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Tang lab


ncbi_isolation_source: rat gut

ncbi_organism_name: Porphyromonadaceae bacterium UBA7130

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Jiangsu Province

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Jiangsu Academy of Agricultural Sciences


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Portugal: Tapada de Mafra

ncbi_isolation_source: feces

ncbi_submitter: University of Aveiro


ncbi_country: Canada: Calgary

ncbi_isolation_source: Digital dermatitis lesion

ncbi_organism_name: Porphyromonas levii

ncbi_submitter: University of Calgary


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T28653

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus sp. FSL K6-1336

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL K6-1336


ncbi_country: Germany: Rostock; Stover Acker

ncbi_isolation_source: biocompost

ncbi_organism_name: Bacillus licheniformis

ncbi_strain_identifiers: DSM 13

ncbi_submitter: Innosoil Phos


ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Faecalibaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_assembly_name: IMG-taxon 2617270930 annotated assembly

ncbi_organism_name: Arenibacter nanhaiticus

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Anaerostipes faecalis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Uhrbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Uhriibacteriota;x__unclassified Candidatus Uhrbacteria;s__Candidatus Uhrbacteria bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shandong

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Zhejiang University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point C

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium RIFOXYC2_FULL_58_10


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lebanese American University- Microbial Pathogenomics Lab


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_isolation_source: faecal

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: SC


ncbi_country: Taiwan

ncbi_isolation_source: stem of the artificial agarwood

ncbi_organism_name: Lacticaseibacillus sp. BCRC 81376

ncbi_submitter: Food Industry Research and Development Institute


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: Rumen uncultured genome RUG189

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Pseudomonas soli

ncbi_submitter: Instituto de Quimica


ncbi_country: China: Hong Kong

ncbi_isolation_source: sediment surface [ENVO:01001192]

ncbi_organism_name: Croceibacterium salegens

ncbi_submitter: Zhejiang Sci-Tech University


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: Massachusetts

ncbi_isolation_source: soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Massachusetts Amherst

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: China: Chengguan District; Lhasa City; Tibet Autonomous Region

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus paragasseri

ncbi_strain_identifiers: IMAU FB017

ncbi_submitter: Key Laboratory of Dairy Biotechnology and Engineering (Inner Mongolia Agricultural University)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universidad del Desarrollo


ncbi_country: Chile: Santiago

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Poland

ncbi_isolation_source: feces

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cross-sectoral framework for quality Assurance Resources for countries in the European Union – CARE


ncbi_country: Spain

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_organism_name: Prosthecobacter dejongeii

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Clostridium] leptum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universtity Hospital Cologne


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: INRAE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Yunnan Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Candidatus Peregrinibacteria bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;x__unclassified Candidatus Peregrinibacteria;s__Candidatus Peregrinibacteria bacterium


ncbi_organism_name: Cuspidothrix issatschenkoi

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Canada: Olinda; Ontario

ncbi_organism_name: Pseudomonas syringae pv. papulans

ncbi_strain_identifiers: ICMP 4050

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. papulans


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Universidade Federal de Vicosa


ncbi_country: USA: International Space Station

ncbi_isolation_source: polymide 4

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: China Jiliang University


ncbi_organism_name: Escherichia sp. WS3096

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_submitter: Laval University


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: Ducze University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_assembly_name: freshwater MAG --- LJ-3-4m_bin-1166

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: University of Minnesota


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea:Jeju

ncbi_isolation_source: marine sediment

ncbi_organism_name: Kineobactrum salinum

ncbi_submitter: Jeju National University


ncbi_country: France

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: China

ncbi_isolation_source: glacier

ncbi_organism_name: Flavobacterium yafengii

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_organism_name: Actinoplanes sp. NPDC051861

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_isolation_source: Hospital surface

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_submitter: Nanyang Technological University


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 1-250-04_S1_C1

ncbi_submitter: IGS


ncbi_country: USA: San Diego Bay; CA

ncbi_isolation_source: swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J

ncbi_organism_name: Thiothrix nivea

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: Clostridium phoceensis

ncbi_organism_name: Clostridium phoceensis

ncbi_submitter: URMITE


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Succinatimonas sp.

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Biological soil crust from Avdat LTER; Negev Desert; Israel

ncbi_organism_name: uncultured Rubrobacteraceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: China: Hebei Qinhuangdao Changli

ncbi_isolation_source: heart blood

ncbi_organism_name: Photobacterium damselae

ncbi_strain_identifiers: Phdp Wu-1

ncbi_submitter: Hebei Normal University of Science &Technology


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: Invasive

ncbi_organism_name: Streptococcus pyogenes


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_strain_identifiers: LT2 KO_STM1028

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Streptococcus sp. FSL K6-1323

ncbi_submitter: Penn State


ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Methylophilaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Malaysia

ncbi_isolation_source: Gastric Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Malaya-University of Western Australia


ncbi_country: China: Shenzhen

ncbi_isolation_source: blood

ncbi_submitter: Shenzhen People's Hospital


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA7145

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Anaerolineales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Germany: Braunschweig

ncbi_isolation_source: DSMZ Isolate

ncbi_organism_name: Nocardia africana

ncbi_submitter: US Food and Drug Administration


ncbi_country: United Kingdom:Wales

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Yersinia pestis CMCC18019

ncbi_submitter: Beijing Genomics Institute


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET1817S

ncbi_submitter: Broad Institute


gtdb_type_species_of_genus: t

ncbi_country: Taiwan

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Syntrophorhabdus aromaticivorans UI

ncbi_strain_identifiers: UI

ncbi_submitter: JGI


ncbi_country: China

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Nitrospinaceae bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA: California

ncbi_organism_name: Rhodococcus sp. BP-291

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Nocardiaceae;g__Rhodococcus;x__unclassified Rhodococcus (in: high G+C Gram-positive bacteria);s__Rhodococcus sp. BP-291


ncbi_country: China: Yushu Prefecture; Qinghai Province

ncbi_organism_name: Xiamenia xianingshaonis

ncbi_submitter: China CDC


ncbi_country: Singapore

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_country: China: Jiangsu; Nanjing

ncbi_isolation_source: abdominal dropsy

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Maniniholo cave; Kauai; Hawaii

ncbi_isolation_source: cave wall; scraping from roof of cave near entrance

ncbi_organism_name: Goleter apudmare HA4340-LM2

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Eggerthella lenta

ncbi_submitter: Washington University in Saint Louis


ncbi_country: China: Yangzhou City; Jiangsu Province

ncbi_isolation_source: stool

ncbi_submitter: SCAU


ncbi_country: China: Zhejiang

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: CDPHE SARS-CoV-2 submissions


ncbi_organism_name: Liquorilactobacillus satsumensis

ncbi_submitter: Teagasc


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_assembly_name: Salmonella enterica CVM 43747 v1.0

ncbi_isolation_source: clinical sample

ncbi_organism_name: Salmonella enterica

ncbi_submitter: FDA


ncbi_country: USA: SC

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_organism_name: Streptomyces sp. NPDC059515

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D3_bin-1232

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_country: Bangladesh: Sylhet

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: NSU Genome Research Institute (NGRI)


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Thermomonas sp.

ncbi_submitter: Aalborg University


ncbi_organism_name: Balneola sp.

ncbi_submitter: University of Southern California


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: soil

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_organism_name: Legionella waltersii

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_submitter: Ruijin Hospital


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Terracoccus sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: MICALIS


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Saint Louis; MO

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Washington University in St. Louis


ncbi_country: Australia: Newcastle

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Exiguobacterium sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp.


ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto - University of Sao Paulo


ncbi_country: Ghana

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_organism_name: Veillonella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Chondroid

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: Icahn School of Medicine


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Akkermansiaceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces fradiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group A) of Oxytorus armatus


ncbi_organism_name: Enterococcus lactis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: EPFL


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Parabacteroides distasonis


ncbi_organism_name: Streptomyces roseolus


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Zhejiang university


ncbi_organism_name: Escherichia sp. WS569

ncbi_submitter: Center for Disease Control and Prevention


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Dojkabacteria;s__Candidatus Dojkabacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital of Hebei North University


ncbi_organism_name: Succinivibrio sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Hallerella sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_submitter: Miguel Servet University Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Oceanospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Arcobacteraceae bacterium

ncbi_submitter: Harvard University


ncbi_country: Uganda: Bombo Military Hospital

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_isolation_source: marine sediment

ncbi_organism_name: Sulfurovum sp. AR

ncbi_strain_identifiers: AR

ncbi_submitter: Chungbuk National University


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Luteibacter sp. 9145

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Ghana:Kassena Nankana District

ncbi_isolation_source: CSF

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio sp. 1982

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Sil CS 1

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Poland: Warszawa

ncbi_isolation_source: blood

ncbi_organism_name: Pseudomonas alloputida

ncbi_submitter: National Medicines Institute


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: green biofilm from alkaline hot spring

ncbi_organism_name: Thermoflexales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_isolation_source: tomato rhizosphere

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Georg-August-University Goettingen, Genomic and Applied Microbiology, Goettingen Genomics Laboratory


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Monash University


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: Boston

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: Canada: Eel Lake; Yarmouth County; Nova Scotia

ncbi_isolation_source: Oyster

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Health Canada


ncbi_country: USA

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Texas Tech University


ncbi_country: Iran: Zanjan

ncbi_isolation_source: Wheat rhizosphere

ncbi_organism_name: Pseudomonas sp. SWRI144

ncbi_submitter: KU Leuven


ncbi_submitter: Hunan Agricultural University, Changsha, Hunan, China


ncbi_isolation_source: lake water

ncbi_organism_name: Cytophagaceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: Faeces

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Enterococcus faecalis ATCC 29212

ncbi_submitter: URMITE


ncbi_organism_name: Bifidobacterium animalis subsp. lactis

ncbi_submitter: University of Parma


ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: The Edison Family Center for Genome Sciences and Systems Biology


ncbi_country: South Africa: Free State

ncbi_isolation_source: Beef mince meat

ncbi_organism_name: Listeria innocua

ncbi_submitter: Agricultural Research Council


ncbi_country: Germany: Muenster

ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Xanthomonas arboricola

ncbi_strain_identifiers: CFBP 8140

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Oribacterium sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Texas

ncbi_isolation_source: Granular activated carbon

ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: USA: District of Columbia

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Bifidobacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Acinetobacter baumannii 25442_9

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Streptococcus suis 89-3576-3

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_submitter: University of Sheffield


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 301

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China:Hubei; Wuhan

ncbi_isolation_source: trachea

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: saliva

ncbi_organism_name: Adlercreutzia sp. Marseille-P7992

ncbi_submitter: URMITE


ncbi_isolation_source: pig gut metagenome

ncbi_submitter: EMG


ncbi_country: USA: Minnesota

ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_organism_name: uncultured Dubosiella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Synergistales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Clostridium sp. CAG:448

ncbi_submitter: DTU


ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolate: FDA_2010_214_Black Pepper-1

ncbi_isolation_source: peppercorn

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo;x__Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1


ncbi_country: Indonesia

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas citri pv. citri

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. citri


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Vaginal

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: University of KwaZulu-Natal


ncbi_country: Austria:Vienna; General Hospital Vienna

ncbi_organism_name: Klebsiella pneumoniae IS46

ncbi_submitter: AIT


ncbi_submitter: University of Calgary


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Sphingomonadaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: China

ncbi_isolation_source: East China Sea

ncbi_organism_name: Pseudoalteromonas atlantica

ncbi_submitter: Shanghai Ocean University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: China: Fankou Lead-Zinc Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: Australia

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ausgem


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Tonga

ncbi_submitter: PulseNet Next Generation Subtyping Methods Unit

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. londinensis;x__Salmonella enterica subsp. VII serovar 1,40:g,z51:--


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Citrobacter cronae

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Ocean University of China


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 50

ncbi_submitter: Lebanese American University


ncbi_country: Tanzania

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: cow

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: EPFL


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Aquatic

ncbi_organism_name: Vibrio campbellii

ncbi_submitter: University of Pennsylvania


ncbi_submitter: China Agricultural University


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Microbial genome science, Genome of Life and Environmental Sciences Division, Frontier Science Research Center


ncbi_organism_name: Blattabacterium cuenoti

ncbi_strain_identifiers: PARCOBvir

ncbi_submitter: Okinawa Institute of Science and Technology


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: C GEN

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_organism_name: Roseiarcus sp.


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Shewanella ulleungensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: EMG


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Emmelina monodactyla


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus


ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Croceibacter atlanticus


ncbi_country: Chile

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad Andres Bello


ncbi_assembly_name: Rumen uncultured genome RUG12292

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Africa: Swellendam

ncbi_isolation_source: Edible oil wastewater; buffer tank

ncbi_organism_name: Streptomyces albidoflavus

ncbi_submitter: Cape Peninsula University of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Faecousia sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Pedobacter suwonensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Parvimonas sp. G1604

ncbi_submitter: Shanxi Medical University


ncbi_organism_name: Schaalia odontolytica

ncbi_submitter: The Edison Family Center of Genome Sciences and Systems Biology


ncbi_organism_name: uncultured Phycisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the First Affiliated Hospital of Guangzhou Medical University


ncbi_submitter: Center for Microbial Communities


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Prevotella pectinovora

ncbi_submitter: Universidad de Leon


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Rhodoplanes sp. SY1

ncbi_submitter: Kyushu University


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_submitter: The University of Melbourne


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Porphyromonadaceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Streptococcus mutans

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Benemerita Universidad Autonoma de Puebla


ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_submitter: EBI


ncbi_country: China

ncbi_isolation_source: microcystis

ncbi_organism_name: Nocardioides lacusdianchii

ncbi_strain_identifiers: JXJ CY 38

ncbi_submitter: JIUJIANG UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: swab

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_isolation_source: lung

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Ares Genetics


ncbi_organism_name: uncultured Prevotellamassilia sp.


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Lancefieldella parvula

ncbi_submitter: EMG


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus


ncbi_country: South Korea: Anseong-si

ncbi_isolation_source: soil

ncbi_organism_name: Paenibacillus anseongense

ncbi_submitter: Chung-Ang University


ncbi_country: China: Yancheng

ncbi_submitter: Yangzhou University


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Viet Nam

ncbi_isolation_source: marine sponge

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: Vietnam Academy of Science and Technology


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: shandong university


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Nocardioides sp.


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: Stakelama pacifica


ncbi_country: Malaysia

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universiti Tunku Abdul Rahman


ncbi_organism_name: Faecousia sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Saccharofermentanales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus 110802495

ncbi_submitter: Broad Institute


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Atlantic Ocean

ncbi_isolation_source: marine water

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Max planck institute for marine microbiology


ncbi_organism_name: Streptomyces sp. 900105755

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Chlamydiifrater volucris

ncbi_submitter: ANSES


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Burkholderiales bacterium


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; high temperature; high CO2

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_country: Egypt

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: k14 before

ncbi_submitter: Cairo University


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: URMC


ncbi_organism_name: uncultured Rikenellaceae bacterium


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: uncultured Gemmatimonadaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: leaves

ncbi_organism_name: Methylobacterium sp. WL19

ncbi_submitter: Aarhus University


ncbi_organism_name: Escherichia coli KTE180


ncbi_country: China: Shandong

ncbi_isolation_source: blood

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Weifang People's Hospital


ncbi_country: Italy

ncbi_organism_name: Comamonas sp. AG1104

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Terminal ileum

ncbi_organism_name: Fusobacterium necrophorum subsp. funduliforme

ncbi_submitter: Virginia Tech


ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Mesocricetibacter sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Microbispora triticiradicis

ncbi_submitter: School of life science


ncbi_isolation_source: feces

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: France: Nice

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas luteoviolacea DSM 6061

ncbi_submitter: Shandong University


ncbi_isolation_source: food production metagenome

ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Jinhua

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of East Anglia


ncbi_organism_name: Listeria ivanovii

ncbi_submitter: Centers for Disease Control and Prevention Enteric Diseases Laboratory Branch


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Candidatus Symbiothrix sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Symbiothrix;x__unclassified Candidatus Symbiothrix;s__Candidatus Symbiothrix sp.


ncbi_country: USA

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Michigan


ncbi_country: Pacific Ocean: Eastern Tropical North Pacific

ncbi_isolation_source: Seawater from oxygen minimum zone

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: Universidade Federal Fluminense


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Blautia producta

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Yersinia pestis

ncbi_submitter: LLP "National Scientific Center of Especially Dangerous Infections named after Masgut Aikimbayev"


ncbi_isolate: SPRUCE 350

ncbi_organism_name: Smithella sp.

ncbi_strain_identifiers: SPRUCE 350

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: uncultured Melioribacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Skin

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: Guadeloupe: Pointe de la Grande Vigie; Guadeloupe; France

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: South China Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Klebsiella aerogenes UCI 48

ncbi_strain_identifiers: UCI 48

ncbi_submitter: Broad Institute


ncbi_country: USA: inshore coral nursery; Key West; FL

ncbi_isolation_source: surface mucus layer

ncbi_organism_name: Vibrio coralliilyticus

ncbi_submitter: University of Florida


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: US Food and Drug Administration


ncbi_country: Thailand

ncbi_isolation_source: diseased Nile tilapia

ncbi_organism_name: Flavobacterium oreochromis

ncbi_submitter: Faculty of Veterinary Science, Chulalongkorn University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Dojkabacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: UCI 20

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Sponge: Oscarella lobularis

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Burkholderia vietnamiensis

ncbi_submitter: University of Michigan


ncbi_isolation_source: colon

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_assembly_name: freshwater MAG --- Ja_bin-4075

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Prolixibacteraceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolate: wBic

ncbi_isolation_source: total DNA from 20 embryos

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wBic

ncbi_submitter: MRC-UNIVERSITY OF GLASGOW CENTRE FOR VIRUS RESEARCH


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Detroit Medical Center

ncbi_submitter: Ares Genetics GmbH


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M2006

ncbi_submitter: Broad Institute


ncbi_organism_name: Mycolicibacterium diernhoferi

ncbi_submitter: San Raffaele Scientific Institute


ncbi_country: China: Tibet

ncbi_isolation_source: soil

ncbi_organism_name: Amycolatopsis sp. A133

ncbi_submitter: Peking Union Medical College


ncbi_organism_name: uncultured Terriglobus sp.

ncbi_submitter: Spribille Lab


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_organism_name: Clostridium tyrobutyricum

ncbi_submitter: University of Natural Resources and Life Sciences Vienna (Universitaet fuer Bodenkultur Wien)


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0703

ncbi_submitter: Texas A&M University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_country: Moldova

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: USA: NY

ncbi_isolation_source: feces sea gull laridae

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Limimaricola cinnabarinus

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EBI


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolate: AOP33_8_surf _bin _6

ncbi_organism_name: Jeotgalicoccus sp.

ncbi_strain_identifiers: AOP33_8_surf _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Enterobacter sp. 166D1

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: SC


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Leptospirillum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;x__Eubacteriaceae incertae sedis;g__Candidatus Allocopromorpha;s__Candidatus Allocopromorpha excrementipullorum


ncbi_country: Singapore

ncbi_isolation_source: sediments

ncbi_organism_name: Gallionellaceae bacterium UBA5126

ncbi_submitter: University of Queensland


ncbi_organism_name: Mycoplasmoides genitalium

ncbi_submitter: University of Alabama at Birmingham


ncbi_country: China

ncbi_isolation_source: ice core

ncbi_organism_name: Cryobacterium sp. Y82

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_submitter: Jiangxi Academy of Agricultural Sciences


ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Iran: Esfhan

ncbi_isolation_source: Tracheal

ncbi_submitter: Pasteur Institute of Iran


ncbi_submitter: University of Pretoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_assembly_name: De novo assembly of KCRI isolate RDK39_42

ncbi_organism_name: Acinetobacter soli

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_country: Canada: Quebec

ncbi_isolation_source: blood

ncbi_organism_name: Anaerobiospirillum sp. NML120449

ncbi_submitter: National Microbiology Laboratory