ncbi_isolation_source: cayenne pepper

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000220


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: USA: GA

ncbi_genome_representation: full

ncbi_isolation_source: forest

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


gtdb_representative: t

ncbi_country: Tonga: Lau Basin

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: rock sample from hydrothermal vent

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Colorado State University


ncbi_assembly_name: freshwater MAG --- Ja1_bin-0683

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Peptococcaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Northeastern University


ncbi_assembly_level: Scaffold

ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Palleronia sp. LCG004

ncbi_submitter: Shanghai Ocean University


ncbi_country: Brazil

ncbi_organism_name: Xanthomonas campestris pv. paulliniae

ncbi_strain_identifiers: NCPPB 3079

ncbi_submitter: University of Exeter


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Ktedonobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_country: South Korea: Nonsan

ncbi_isolation_source: feces

ncbi_organism_name: Comamonas sp. NLF-1-9

ncbi_submitter: National Institute of Agricultural Sciences


ncbi_country: China: Harbin

ncbi_isolation_source: sewage

ncbi_organism_name: Rhodococcus ruber

ncbi_strain_identifiers: IEGM 346

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Pseudomonas rhodesiae

ncbi_submitter: Cornell University


ncbi_submitter: University of Alabama Birmingham


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Methylopumilus universalis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: United Kingdom

ncbi_isolation_source: Duck

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Alistipes senegalensis

ncbi_submitter: EMG


ncbi_country: China: Sichuan

ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Research Center of Avian Diseases, RCAD


ncbi_organism_name: Bifidobacterium crudilactis

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Hungary

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Debrecen


ncbi_organism_name: Rhizobium sp. AN69

ncbi_submitter: University of Massachusetts Amherst


ncbi_country: Slovenia

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: National laboratory for health, environment and food


ncbi_submitter: University of Barcelona


ncbi_isolation_source: skin; soft tissue infection

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Spain

ncbi_submitter: Universidad Complutense de Madrid


ncbi_country: India

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: Lebanon

ncbi_submitter: ANSES


ncbi_country: Malaysia

ncbi_isolation_source: Dental Plaque

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: University of Malaya


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Italy

ncbi_isolation_source: Ice-cream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Capnocytophaga gingivalis ATCC 33624

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga;s__Capnocytophaga gingivalis;x__Capnocytophaga gingivalis ATCC 33624

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: uncultured Rhodospirillaceae bacterium

ncbi_submitter: EMG


ncbi_country: Portugal: Porto

ncbi_isolation_source: blood culture

ncbi_organism_name: Acinetobacter baumannii


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_organism_name: Xanthomonas sp. NCPPB 3443

ncbi_strain_identifiers: NCPPB 3443

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: Brazil: Sobradinho

ncbi_isolation_source: kidney

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: UFMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Hawaii

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: MIT


ncbi_country: USA: California

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Desulfobacteraceae bacterium


ncbi_country: Estonia

ncbi_isolation_source: urine

ncbi_submitter: University of Tartu


ncbi_country: Germany

ncbi_isolation_source: food

ncbi_submitter: FEDERAL INSTITUTE FOR RISK ASSESSMENT (BFR)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_country: USA: Rochester; NY

ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Rochester


ncbi_country: USA: Palo Alto; CA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aston University


ncbi_isolation_source: Bumblebee; B. terrestris

ncbi_organism_name: Hafnia alvei

ncbi_submitter: Ghent University


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Kerstersia gyiorum

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Klenkia terrae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Japan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Oxford


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Phocaeicola coprocola

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces lavendulocolor

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: uncultured Caldisericota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__environmental samples;s__uncultured Caldisericota bacterium


ncbi_submitter: University of Southampton


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_assembly_name: freshwater MAG --- C24_bin-1825

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Ottowia sp.


ncbi_organism_name: Pseudonocardiaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


ncbi_country: China: Innermogolia

ncbi_isolation_source: sediments

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Streptomyces sp. NPDC050418


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Nanchang; Poyang Lake

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia albertii

ncbi_submitter: Chinese Center for Disaease Control and Prevention


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: uncultured Alistipes sp.


ncbi_refseq_category: reference genome

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Othius punctulatus


ncbi_isolation_source: lake water

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Micromonospora sp. NPDC047134

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: USA: Auburn

ncbi_isolation_source: rhizosphere

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: Auburn University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Paraprevotella stercoravium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Mycobacterium asiaticum DSM 44297

ncbi_submitter: San Raffaele Scientific Institute


ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii UH16008

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: EMG


ncbi_isolate: human

ncbi_organism_name: Mycobacterium decipiens

ncbi_strain_identifiers: human;ATCC TSD-117

ncbi_submitter: Intitut Pasteur Paris


ncbi_country: Cameroon: Boteva

ncbi_isolation_source: Red cocoyam rhizosphere

ncbi_organism_name: Pseudomonas botevensis

ncbi_submitter: KU Leuven


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Clostridium sp. SM-530-WT-3G

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_isolation_source: cold seep

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: milk

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: RNA Bioinformatics and High-Throughput Analysis Friedrich Schiller University Jena


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Anaerolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: wheat leaves showing bacterial leaf streak (BLS) symptoms caused by Xanthomonas translucens

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_isolation_source: feces

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides intestinavium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: shanghai

ncbi_isolation_source: Pus

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital


ncbi_isolation_source: C600 transformat with plasmid IncX3

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital of Guangzhou Medical University


ncbi_country: Germany: Lake Constance

ncbi_isolation_source: Hypolimnion

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Constance


ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Clostridiaceae bacterium AM27-36LB

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacillus mojavensis

ncbi_submitter: USDA-ARS-NCAUR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Jyvaskyla


ncbi_country: Germany

ncbi_isolation_source: Swab (Screening)

ncbi_submitter: SurvCARE


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: duck

ncbi_organism_name: Staphylococcus sp. MZ7

ncbi_submitter: Henan Agricultural University


ncbi_country: Taiwan: Pingtung Prefecture; Tungkang

ncbi_isolation_source: culture of toxic marine dinoflagellates Alexandrium sp.

ncbi_organism_name: Haliea alexandrii

ncbi_submitter: Zhejiang Ocean University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Beijing

ncbi_isolation_source: patient with infection

ncbi_submitter: Peking University Third Hospital


ncbi_isolation_source: Columbia River coastal margin; salinty 33

ncbi_organism_name: Flavobacteriales bacterium UBA3442

ncbi_submitter: University of Queensland


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not available: to be reported later


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Rhodospirillales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus lugdunensis

ncbi_strain_identifiers: acrny

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Bacillota bacterium


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Institute of Health Dr Ricardo Jorge


ncbi_country: Sri Lanka:Anuradhapura

ncbi_isolation_source: blood

ncbi_organism_name: Leptospira interrogans

ncbi_submitter: Rajarata University of Sri lanka


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidade de Tras-os-Montes e Alto Douro


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_isolate: AOP8_B2_surf _bin _6

ncbi_organism_name: Hafnia alvei

ncbi_strain_identifiers: AOP8_B2_surf _bin _6

ncbi_submitter: Genoscope


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Polyangiaceae bacterium


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: EMG


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_organism_name: Salmonella sp. NW998

ncbi_submitter: Sichuan University


ncbi_organism_name: Peptoniphilus grossensis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: Flectobacillus roseus

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kenya Medical Research Institute


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: human gut


ncbi_country: Japan

ncbi_organism_name: Helicobacter cinaedi

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Gammaproteobacteria bacterium UBA3529

ncbi_submitter: University of Queensland


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Alistipes sp. AM16-43

ncbi_submitter: BGI


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_isolation_source: metagenome

ncbi_submitter: addis ababa university


ncbi_country: Russia: Saint-Petersburg

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Federal State Budgetary Scientific Institution Institute of Experimental Medicine


ncbi_organism_name: uncultured Monoglobus sp.


ncbi_country: Oman

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Ministry of Health


ncbi_country: France: Lille

ncbi_isolation_source: broncho-alveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Allobaculum sp.


ncbi_country: Nigeria

ncbi_submitter: Cepheid


ncbi_country: Denmark: Aalborg W

ncbi_isolation_source: activated sludge from AalW_18-Q3-R10-53

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Aalborg University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Porphyromonadaceae bacterium UBA7088

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bariatricus massiliensis

ncbi_submitter: University of Chicago


ncbi_assembly_level: Chromosome

ncbi_submitter: Zhejiang University


ncbi_country: Switzerland

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei

ncbi_submitter: University of Bern


ncbi_assembly_name: freshwater MAG --- MJ110802A_bin-215

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS


ncbi_country: USA: Michigan

ncbi_organism_name: Sphingomonas sp. PvP018

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: China: Guizhou; Longli

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Streptomyces sp. TX20-6-3

ncbi_submitter: Oregon State University


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva


ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_country: China

ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: bioreactor under electrogenic and nitrate-reducing conditions

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Radboud University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lactococcus lactis


ncbi_country: Poland: Ostrow Mazowiecka

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Chad

ncbi_organism_name: Brucella abortus 78/14

ncbi_submitter: Broad Institute


ncbi_organism_name: Rubrivivax gelatinosus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_assembly_name: Rumen uncultured genome RUG10415

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Brittany

ncbi_isolation_source: water

ncbi_organism_name: Alteromonas sp. LTR

ncbi_strain_identifiers: LTR

ncbi_submitter: Bar Ilan university


ncbi_country: USA: Iowa; Iowa City

ncbi_isolation_source: Cystic Fibrosis airway culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: France: Marseille

ncbi_organism_name: Achromobacter sp. Marseille-Q0513

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: Campylobacter molothri

ncbi_submitter: USDA, ARS, WRRC


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: NIVIP


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Japan:Kyoto; Kameoka

ncbi_isolation_source: soil

ncbi_organism_name: Arthrobacter sp. StoSoilA2

ncbi_submitter: Research Institute for Sustainable Humanosphere (RISH), Kyoto University


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: USA

ncbi_isolation_source: chicken breast

ncbi_submitter: U.S. Food and Drug Administration

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Schwarzengrund


ncbi_isolation_source: human gut

ncbi_submitter: EMG


ncbi_organism_name: Caldicellulosiruptor bescii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_organism_name: Segatella copri

ncbi_submitter: University of Chicago


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus pasteurianus


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: soft tissue

ncbi_submitter: SC


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-DS1

ncbi_organism_name: Methylomonas sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_isolate: Escherichia coli str. TO6

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: Escherichia coli str. TO6

ncbi_submitter: Leibniz-Institut DSMZ-Deutsche Sammlung von Mikro


ncbi_organism_name: Paraburkholderia sp. EG287B

ncbi_submitter: The James Hutton Institute


ncbi_organism_name: Escherichia coli 110957

ncbi_submitter: Washington University


ncbi_country: Peru: Lima

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: leaf

ncbi_organism_name: Xanthomonas sp. Leaf148

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_assembly_name: De novo assembly of KCRI isolate RDK36_4

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Blautia obeum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: WA

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_isolation_source: feces

ncbi_submitter: Kansas State University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: Papua New Guinea

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella intestinalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Proteus sp. G4379

ncbi_submitter: nankai university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4379


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: City University of Hong Kong


ncbi_country: Taiwan: Kaohsiung

ncbi_isolation_source: pond

ncbi_organism_name: Aeromonas hydrophila

ncbi_submitter: National Sun Yat-sen University


ncbi_organism_name: Campylobacter coli

ncbi_submitter: SC


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Parabacteroides merdae


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Fructobacillus fructosus

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Stavanger University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG13481

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_organism_name: uncultured Ruminiclostridium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_submitter: MRSN BI Team


ncbi_organism_name: Pseudomonas sp. HLG18

ncbi_submitter: Southwest University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolate: SPRUCE 233

ncbi_organism_name: Beijerinckiaceae bacterium

ncbi_strain_identifiers: SPRUCE 233

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Brazil: Blumenau

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: SAR324 cluster bacterium

ncbi_submitter: Utrecht University

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: South Africa

ncbi_isolation_source: Blood culture

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute for Communicable Disease


ncbi_country: USA: Georgia

ncbi_organism_name: Pseudomonas alliivorans

ncbi_submitter: University of Georgia


ncbi_country: Australia: NSW

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: NGH Pa42

ncbi_submitter: King Abdullah University Science and Technology


ncbi_organism_name: Acinetobacter radioresistens

ncbi_submitter: EMG


gtdb_type_species_of_genus: t

ncbi_organism_name: Providencia alcalifaciens


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Geneva University Hospitals


ncbi_country: Argentina: Valle Huemules; Chubut Province

ncbi_organism_name: Brucella ovis IntaBari-2009-88-4

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Lacticaseibacillus paracasei subsp. paracasei

ncbi_strain_identifiers: TISTR 2593

ncbi_submitter: King Mongkuts Institute of Technology Ladkrabang (KMITL)


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Syntrophaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA:North Carolina

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: North Carolina State University


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Sodaliphilus pleomorphus

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Arthrobacter sp. UYEF21

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Collinsella sp. CLA-ER-H9

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: China: Guide

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Apibacter sp. B3919

ncbi_submitter: China Agricultural University


ncbi_organism_name: Flavobacteriaceae bacterium EG-1

ncbi_submitter: Chungbuk national university


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Actinomyces sp.

ncbi_submitter: EBI


ncbi_country: China

ncbi_organism_name: Chryseobacterium lactis

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Tibial Plateau Leveling Osteotomy (TPLO) site

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Washington University School of Medicine


ncbi_country: Sweden

ncbi_isolation_source: bronchial

ncbi_organism_name: Mycobacterium tuberculosis BTB03-143

ncbi_submitter: Broad Institute


ncbi_country: New Zealand: Canterbury region

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: The University of Auckland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: South Africa: Pretoria

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of KwaZulu Natal


ncbi_organism_name: Microcoleus sp. MOSTC5

ncbi_submitter: Palacky University Olomouc


ncbi_organism_name: Leptospira interrogans

ncbi_submitter: insititute for microbiology and immunology, faculty of medicine, univerza v ljubljani


ncbi_country: Australia: Brisbane

ncbi_isolation_source: skin swab1381 from squamous cell carcinomas patient MST003

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Queensland


ncbi_country: Japan: Kume Island

ncbi_isolation_source: fish

ncbi_organism_name: Photobacterium leiognathi subsp. mandapamensis

ncbi_submitter: California Academy of Sciences


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: Kvitko Lab


ncbi_organism_name: Clostridium disporicum

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: New Zealand: Nelson Marlborough

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: Infection

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Washington University


ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: MD

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: US Food and Drug Administration


ncbi_country: China: Shanxi

ncbi_isolation_source: ocular surface of healthy person

ncbi_organism_name: Paenibacillus silvae

ncbi_submitter: China CDC


ncbi_country: Switzerland: Basel

ncbi_isolation_source: waste water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Zurich


ncbi_organism_name: Aquihabitans sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: food

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Guangdong Institute of Microbiology, Guangzhou city, China


ncbi_country: China: Zhejiang

ncbi_isolation_source: meat

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Filimonas zeae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: gamma proteobacterium HTCC2207

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Candidatus Multivorans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;x__unclassified Candidatus Multivorans;s__Candidatus Multivorans sp.


ncbi_country: Japan

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Yonsei University


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15956

ncbi_submitter: Broad Institute


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: Spain

ncbi_isolation_source: stool

ncbi_submitter: IPLA - CSIC


ncbi_organism_name: Bacillus subtilis subsp. natto BEST195

ncbi_submitter: Keio University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. natto;x__Bacillus subtilis subsp. natto BEST195


ncbi_country: USA: TX

ncbi_isolation_source: feces parrot

ncbi_submitter: FDA/CFSAN


ncbi_country: Sweden

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli O25b:H4

ncbi_submitter: Public Health Agency of Sweden


ncbi_organism_name: Aeromonas salmonicida subsp. salmonicida

ncbi_submitter: Universite Laval


ncbi_isolation_source: ammonium-rich; mesophilic methanogenic a continuously stirred laboratory-scale reactor

ncbi_organism_name: Tepidanaerobacter acetatoxydans Re1

ncbi_submitter: US DOE Joint Genome Institute


ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Christensenella sp. UBA7584

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: India

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Australia

ncbi_isolation_source: mucosal tissue from Crohns disease patient

ncbi_organism_name: Peptostreptococcus anaerobius


ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_strain_identifiers: NKM 5.4

ncbi_submitter: VNU-Institute of Microbiology and Biotechnology, Vietnam National University, Hanoi


ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Planktothrix paucivesiculata PCC 9631

ncbi_submitter: Genoscope CEA


ncbi_isolation_source: patient with infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Peking University Third Hospital


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Macrococcus equi

ncbi_submitter: University of Bern


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Georgia Tech


ncbi_organism_name: Salmonella sp. SAL04258

ncbi_submitter: Zhejiang university


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Rhizobiaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Universidad del Pais Vaso/Euskal Herriko Unibertsitatea (UPV/EHU)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Gemmiger sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: China: NanJing

ncbi_isolation_source: partial denitrification and anammox bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: NanJing University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: RARI


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_assembly_name: freshwater MAG --- Erken-D8_bin-0018

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Scotland; Fife

ncbi_isolation_source: lung

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_isolation_source: mussel bed

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-2773

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Methylococcaceae bacterium


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_country: USA: Colorado

ncbi_organism_name: Variovorax boronicumulans

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_assembly_name: freshwater MAG --- B4coas_bin-0165

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Sphingomonadales bacterium


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: North Carolina

ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus auricularis

ncbi_submitter: Harbin Medical University


ncbi_country: Greenland: the Little Firn glacier in the Knuths Fjeld

ncbi_isolation_source: glacier surface soil

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: Aarhus University


ncbi_assembly_name: Rumen uncultured genome RUG14310

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: rectal swab

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: City University of Hong Kong


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Polyangiales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Agromyces sp. 3263


ncbi_assembly_name: Rumen uncultured genome RUG10975

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_organism_name: Chromatiales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing University


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Cryomorphaceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: Homoserinimonas sp.

ncbi_submitter: Centro de Astrobiologia


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: BGI


ncbi_country: Madagascar

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: Hong Kong

ncbi_isolation_source: ACE-degrading consortia seeded with activated sludge sampled from 6 local waste water treatment plants (WWTPs)

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_organism_name: Rikenellaceae bacterium


ncbi_assembly_name: Salmonella enterica CVM N46823 v1.0

ncbi_country: USA: CO

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Christian Medical College


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCPF17_011

ncbi_submitter: University of California, Irvine


ncbi_assembly_name: freshwater MAG --- LaPlata_bin-1558

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Germany: Golm

ncbi_isolation_source: root

ncbi_organism_name: Ensifer sp. Root31

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: South Korea: Changnyeong-gun; Nakdong River

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: Lacihabitans sp. CS3-21

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Steroidobacter sp.

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: aquatic metagenome

ncbi_organism_name: uncultured Rhodospirillales bacterium


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1436

ncbi_submitter: Broad Institute


ncbi_organism_name: Corynebacterium xerosis

ncbi_submitter: University of Minnesota


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus LAMC6084


ncbi_organism_name: Flavobacteriaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Isosphaeraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: University of Parma


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: termite gut

ncbi_organism_name: Bacteroides sp. UBA939

ncbi_submitter: University of Queensland


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: South China Agricultural University


ncbi_country: Iran

ncbi_organism_name: Mycobacterium tuberculosis NRITLD11


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Germany

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-104 (HZI)


ncbi_organism_name: Romboutsia timonensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Slovenia

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Bacillus cereus

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Marinobacterium sp. xm-a-121

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: China: Qingdao

ncbi_submitter: Shandong University


ncbi_isolation_source: marine sediment

ncbi_organism_name: Galbibacter mesophilus

ncbi_submitter: Ministry of Natural Resources & Second Institute of Oceanography, Ministry of Natural Resources


ncbi_country: USA: University of Georgia in Athens; GA

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; hindgut

ncbi_submitter: University of Georgia


ncbi_organism_name: Clostridium butyricum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacteriaceae bacterium UBA6698


ncbi_isolate: Clinical

ncbi_isolation_source: Cough swab

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: Clinical

ncbi_submitter: newcastle university


ncbi_country: China: Xuzhou

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: uncultured Rhodobacterales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 149

ncbi_submitter: Oregon State University


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Pseudomonas siliginis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Aphodousia faecipullorum

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: [Eubacterium] siraeum


ncbi_country: USA: Alabama

ncbi_isolation_source: tongue

ncbi_organism_name: Streptococcus mutans

ncbi_submitter: University of Alabama at Birmingham


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Angelakisella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human skin metagenome

ncbi_organism_name: uncultured Anaerococcus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Thailand

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Methylobacterium radiotolerans


ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_assembly_name: freshwater MAG --- AM_bin-4247

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;g__Coxiella;x__unclassified Coxiella (in: g-proteobacteria);s__Coxiella endosymbiont of Dermacentor silvarum


ncbi_organism_name: Dolichospermum sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Acinetobacter sp. YQ_14

ncbi_submitter: WenZhou Medical University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_submitter: University of California, Berkeley; School of Public Health


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Huangshaping Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Kurthia gibsonii

ncbi_submitter: Shandong First Medical University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: diffuse vent DFF1

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_country: China: sewage sludge of the Wastewater Treatment Plant of Sanming Steel Co. Ltd; Fujian

ncbi_isolation_source: sewage sludge

ncbi_organism_name: Oscillospiraceae bacterium MB24-C1

ncbi_submitter: Sanming University


ncbi_isolation_source: caecum

ncbi_organism_name: Faecalitalea cylindroides

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: CGMCC

ncbi_isolation_source: CGMCC

ncbi_organism_name: Rhodococcus rhodochrous

ncbi_submitter: Dalian University of Technology


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_isolation_source: leaf

ncbi_organism_name: Pseudomonas syringae pv. syringae SM

ncbi_strain_identifiers: SM

ncbi_submitter: Institute of Plant Biology, University of Zurich

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae;x__Pseudomonas syringae pv. syringae SM


ncbi_country: China: Shanghai

ncbi_submitter: School of Agriculture and Biology, Shanghai Jiao Tong University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TRS10

ncbi_submitter: Vanderbilt University


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Acidimicrobiales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Oscillospiraceae;g__Ruminococcus;s__Ruminococcus bicirculans (ex Wegman et al. 2014)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Azoarcus sp.

ncbi_submitter: Technische Universiteit Delft


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Streptomycetaceae bacterium

ncbi_submitter: University of Montreal


ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_country: USA: WI

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: CDC


ncbi_country: Canada: Calgary; Wastewater treatment plant

ncbi_isolation_source: Wastewater

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Alberta


ncbi_organism_name: Oscillibacter sp. CAG:241

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: China: Beijing

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Nanjing Agriculture University


ncbi_country: Brazil

ncbi_organism_name: Xanthomonas citri pv. glycines

ncbi_submitter: IRHS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. glycines


ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_country: China

ncbi_isolation_source: freshwater

ncbi_organism_name: Aphanizomenon flos-aquae FACHB-1287

ncbi_submitter: South China Normal University


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_country: Brazil:Sao Paulo; Santos

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Paraguay: Paraguari

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: no molasses with increasing thiocyanate

ncbi_organism_name: Bosea sp. (in: a-proteobacteria)

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Boseaceae;g__Bosea;x__unclassified Bosea (in: a-proteobacteria);s__Bosea sp. (in: a-proteobacteria)


ncbi_organism_name: Streptomyces luridiscabiei

ncbi_submitter: USDA Agricultural Research Service


ncbi_organism_name: Pluralibacter gergoviae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Israel

ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium GW2011_GWE1_35_17


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidiferrobacter sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Pushchino; Moscow region

ncbi_isolation_source: rhizoplane

ncbi_organism_name: Methylovorus menthalis

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_isolation_source: cat oral swab

ncbi_organism_name: Capnocytophaga catalasegens

ncbi_submitter: Dept. of Veterinary Science, National Institute of Infectious Diseases


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Mississippi State University


ncbi_country: USA

ncbi_isolation_source: feces

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: Gar CS 7

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Phocaeicola sartorii

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_country: Ireland: Cork

ncbi_isolation_source: milk

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University College Cork


ncbi_country: Russia: Tula

ncbi_submitter: Shemyakin and Ovchinnikov Institute of Bioorganic Chemistry of the Russian Academy of Sciences


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Auburn University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Escherichia coli

ncbi_submitter: shandongdaxue


ncbi_submitter: China Agricultural University


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: South Africa: Soweto; Gauteng

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Enterobacter kobei

ncbi_submitter: JCVI


ncbi_country: Canada: Station Biologique des Laurentides (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. E-065

ncbi_submitter: Universite du Quebec a Montreal


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMG


ncbi_country: USA: Michigan

ncbi_isolation_source: sputum

ncbi_organism_name: Aeromonas veronii bv. veronii

ncbi_submitter: Institut d'Investigacio Biomedica Sant Pau


ncbi_country: China: Jiangsu

ncbi_isolation_source: cloaca

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_submitter: Universidad Complutense de Madrid


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Environmental; maize

ncbi_organism_name: Burkholderia ambifaria

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Micavibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: DOE Joint Genome Institute


ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_assembly_name: Rumen uncultured genome RUG11653

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Egypt: Minya; Abu Qurqas

ncbi_isolation_source: root nodules

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_strain_identifiers: FR 79

ncbi_submitter: msa univeristy


ncbi_country: USA: VA

ncbi_isolation_source: sediment

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0640

ncbi_submitter: Broad Institute


ncbi_country: Czech Republic: Lisov

ncbi_isolation_source: well water

ncbi_organism_name: Acinetobacter dispersus


ncbi_assembly_name: Rumen uncultured genome RUG12442

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Streptomyces sp. NPDC002992

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain: Asturias

ncbi_isolation_source: rectal swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: China: Guangxi; Dashan

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Longshenao Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudomonas atacamensis


ncbi_organism_name: uncultured Pseudoalteromonas sp.


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Salmonella sp. NW1108

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Fluviicola sp.


ncbi_organism_name: uncultured Dehalococcoidales bacterium


ncbi_organism_name: Marinicellaceae bacterium

ncbi_submitter: University of California, Riverside


ncbi_organism_name: Salmonella sp. NW279


ncbi_organism_name: bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: China: Banpo Antimony Mine; Guizhou Province


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMBL-EBI


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: Center for Microbial Communities


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Tissierellia bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: EPFL


ncbi_country: China: Fuxian Lake; Yuxi

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Nanjing Institute of Geography & Limnology, Chinese Academy of Sciences


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_submitter: Lund University


ncbi_organism_name: Bryobacterales bacterium


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Candidatus Arcticimaribacter sp.

ncbi_submitter: Institut de Ciencies del Mar

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;f__Flavobacteriaceae;g__Candidatus Arcticimaribacter;x__unclassified Candidatus Arcticimaribacter;s__Candidatus Arcticimaribacter sp.


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Fujita Health University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Pseudomonas sp. KBN10P06128

ncbi_submitter: Kyungpook National University


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Sweden

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_strain_identifiers: OMGS 2516

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_country: Viet Nam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia thailandensis

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Russia: Saint-Petersburg

ncbi_isolation_source: surface-sterilized stems

ncbi_organism_name: Bacillus safensis

ncbi_submitter: ARRIAM


ncbi_country: USA: PA

ncbi_isolation_source: fecal cow (Bos taurus)

ncbi_submitter: FDA/CFSAN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SRCAMB


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Limosilactobacillus sp.

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Coxiella burnetii

ncbi_submitter: ANIMAL HEALTH AND VETERINARY LABORATORIES AGENCY


ncbi_country: Switzerland: Le Moleson region; Fribourg

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp. ESL0228

ncbi_submitter: University of Lausanne


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: EPFL


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: groundwater

ncbi_organism_name: Gallionella sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Alphaproteobacteria bacterium


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0359R

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: Potable Water Dispenser (PWD) Ambient (bag) from International Space Station

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: J.Craig Venter Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: sediment

ncbi_organism_name: Priestia flexa

ncbi_submitter: Peking University Shenzhen Institute


ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: Beluga_E UMBAC_00009

ncbi_submitter: UW-Madison


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_strain_identifiers: LT2 KO_STM0907

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_isolation_source: unknown

ncbi_organism_name: Muribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Bacteroidales bacterium


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Akkermansiaceae bacterium UBA1982

ncbi_submitter: University of Queensland


ncbi_country: China

ncbi_isolation_source: desert regolith

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Alphaproteobacteria bacterium UBA4642


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Aalborg University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: Finland

ncbi_isolation_source: milk

ncbi_organism_name: Weissella confusa

ncbi_submitter: University of Saskatchewan


ncbi_organism_name: Aquabacterium sp. G14

ncbi_submitter: Shanxi Medical University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Aquabacterium;x__unclassified Aquabacterium;s__Aquabacterium sp. G14


ncbi_country: USA: Texas

ncbi_isolation_source: Clean room

ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: NASA Johnson Space Center


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Sphingomonas sp. ACRSK

ncbi_strain_identifiers: ACRSK

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Agromyces salentinus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Lin An

ncbi_isolation_source: plant

ncbi_organism_name: Terribacillus saccharophilus

ncbi_submitter: Zhejiang Agricultural and Forestry University


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: South Dakota; Sanford Underground Research Facility

ncbi_isolation_source: deeply circulating subsurface aquifer fluids

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Throat swab

ncbi_organism_name: Chlamydia psittaci

ncbi_strain_identifiers: Po An

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Dysosmobacter welbionis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Cytophagales bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Sphingobacteriia;o__Sphingobacteriales;x__environmental samples;s__uncultured Cytophagales bacterium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Luteimonas kalidii

ncbi_submitter: Inner Mongolia University


ncbi_assembly_name: freshwater MAG --- MJ120716B_bin-132

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Campylobacterales bacterium

ncbi_submitter: BILS


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Auribacterota bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Auribacterota;x__unclassified Candidatus Auribacterota;s__Candidatus Auribacterota bacterium


ncbi_organism_name: Faecalibaculum rodentium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yangzhou

ncbi_isolation_source: intestinal contents

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: YangZhou university


ncbi_isolation_source: human gut

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-459-B06

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Enterobacter quasimori

ncbi_submitter: West China Hospital, Sichuan University


ncbi_country: Spain: Galicia

ncbi_isolation_source: Reared clam

ncbi_organism_name: Vibrio toranzoniae

ncbi_submitter: Universidad de Santiago de Compostela


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Ligilactobacillus murinus


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Atlantic Ocean:Mid Cayman Rise

ncbi_isolation_source: Von Damm hydrothermal vent plume at depth 2041m

ncbi_organism_name: Candidatus Ruthia sp. UBA2013

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Ruthturnera;x__unclassified Candidatus Ruthturnera;s__Candidatus Ruthia sp. UBA2013


ncbi_organism_name: Sulfurimonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Terriglobales bacterium


ncbi_isolation_source: infrarenal artery

ncbi_organism_name: Chlamydia pneumoniae

ncbi_submitter: University of Vienna


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. K1792

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. K1792


ncbi_country: Czech Republic

ncbi_isolation_source: bodily cavity

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Masaryk University


ncbi_country: USA: California

ncbi_isolation_source: Anal Gland secretions

ncbi_organism_name: Corynebacterium frankenforstense

ncbi_submitter: University of California, Davis


ncbi_country: Pacific Ocean: NW Rota-1 Seamount

ncbi_isolation_source: water

ncbi_organism_name: Lebetimonas sp. JH292

ncbi_submitter: Marine Biological Lab


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Coriobacteriales bacterium OH1046

ncbi_submitter: UC Davis


ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: USA: Indiana

ncbi_isolation_source: spinach (foodborne isolate)

ncbi_organism_name: Clostridium botulinum

ncbi_strain_identifiers: KF Meyer 126

ncbi_submitter: Northern Arizona University


ncbi_submitter: INRA


ncbi_isolation_source: ocean sediment

ncbi_organism_name: Exiguobacterium mexicanum

ncbi_strain_identifiers: A-EM

ncbi_submitter: Qingdao University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium mexicanum


ncbi_country: China: Guangzhou

ncbi_isolation_source: blood

ncbi_submitter: zhejiang University


ncbi_assembly_name: freshwater MAG --- Ki3-D2_bin-2221

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Opitutia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;x__environmental samples;s__uncultured Opitutia bacterium


ncbi_organism_name: uncultured Tepidisphaeraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Amedibacterium intestinale

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia sp. AU32357

ncbi_submitter: University of Michigan


ncbi_assembly_name: De novo assembly of KCRI isolate RDK43_74

ncbi_isolation_source: wound swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kilimanjaro Clinical Research Institute


ncbi_organism_name: Sphingobacterium alkalisoli

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Kitasatospora aureofaciens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Melioribacter sp.


ncbi_organism_name: Streptomyces sp. NPDC093546


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces fagopyri


ncbi_organism_name: Bradyrhizobium sp. HKCCYLRH3097

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: FSRIVI "Virome" Rospotrebnadzor


ncbi_organism_name: Hoeflea sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_isolate: AOP34_BR2_surf _bin _33

ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: AOP34_BR2_surf _bin _33

ncbi_submitter: Genoscope


ncbi_organism_name: uncultured Flavobacteriaceae bacterium


ncbi_organism_name: Tardiphaga sp. 619_E2_N8_5

ncbi_submitter: VIB


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Clostridia bacterium