ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Bifidobacterium scardovii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Paenibacillus xylanexedens

ncbi_submitter: EMG


gtdb_representative: t

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_assembly_level: Scaffold

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Rumen uncultured genome RUG11229

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of California Davis


ncbi_isolation_source: metagenome

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Russia: Udmurt Republic

ncbi_isolation_source: oil-polluted soil; oil-extracting enterprise

ncbi_organism_name: Rhodococcus qingshengii

ncbi_strain_identifiers: IEGM 746

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Acetobacter okinawensis JCM 25146

ncbi_submitter: The University of Tokyo

ncbi_type_material_designation: assembly from type material


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMBL-EBI


ncbi_country: Russia

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_organism_name: Polynucleobacter arcticus

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_assembly_level: Complete Genome

ncbi_country: USA: ID

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter seifertii

ncbi_submitter: Taipei Veterans General Hospital


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: Japan

ncbi_isolation_source: Front yard where neighbor s dogs are kept

ncbi_organism_name: Sporosarcina sp. P31

ncbi_submitter: University of Arizona


ncbi_organism_name: Paenibacillus intestini

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


ncbi_country: Mexico: Texcoco; Estado de Mexico

ncbi_organism_name: Anaplasma marginale

ncbi_submitter: INIFAP


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: [Ruminococcus] torques CAG:61

ncbi_submitter: DTU


ncbi_organism_name: Dermacoccus abyssi

ncbi_refseq_category: reference genome

ncbi_submitter: University of Mississippi


ncbi_country: USA: Texas

ncbi_organism_name: Tsukamurella ocularis


ncbi_country: USA

ncbi_isolation_source: River water

ncbi_organism_name: Aeromonas jandaei Riv2

ncbi_submitter: USFDA


ncbi_organism_name: Candidatus Kaftiobacterium secundum

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Sysuimicrobiota;c__Candidatus Sysuimicrobiia;o__Candidatus Sysuimicrobiales;f__Candidatus Kaftiobacteriaceae;g__Candidatus Kaftiobacterium;s__Candidatus Kaftiobacterium secundum


ncbi_submitter: Chinese center for disease control and prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: surface-sterilized seed

ncbi_organism_name: Xanthomonas sp. SHU 308

ncbi_strain_identifiers: SHU 308

ncbi_submitter: Colorado State University


ncbi_country: Pacific Ocean

ncbi_isolation_source: water

ncbi_organism_name: Alteriqipengyuania abyssalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR PIMIT - Processus infectieux en milieu insulaire tropical


ncbi_country: China: Shenyang

ncbi_isolation_source: lake water

ncbi_organism_name: Legionella qingyii

ncbi_submitter: kingMed Center for Clinical Laborary


ncbi_organism_name: Cycloclasticus sp.

ncbi_submitter: Pau University


ncbi_country: South Korea: Boryung

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Korea Research Institute of Bioscience & Biotechnology


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_country: Japan:Niigata; Myoko

ncbi_isolation_source: fermented vegetable extract

ncbi_organism_name: Philodulcilactobacillus myokoensis

ncbi_submitter: National Institute of Technology, Oyama College


ncbi_country: Spain: Asturias

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_organism_name: Mesorhizobium kowhaii

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Germany: Kiel

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter sp. C6_2

ncbi_submitter: Max Rubner-Institut


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Henan Agricultural University


ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Petersham; MA

ncbi_isolation_source: Nodules

ncbi_organism_name: Frankia sp. CpI1-P

ncbi_submitter: University of New Hampshire


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Hyphomicrobiaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: IL

ncbi_isolation_source: organic soy

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Paratyphi A

ncbi_submitter: Chinese center for disease control and prevention


ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: beijing


ncbi_country: China: Xinjiang Province

ncbi_isolation_source: china: Gobi desert

ncbi_organism_name: Sphingobacterium gobiense

ncbi_submitter: Chinese Academy of Forestry


ncbi_isolation_source: not known

ncbi_submitter: SC


ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sun-yat Sen University


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA49447

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus AMMC6012

ncbi_submitter: Broad Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China

ncbi_isolation_source: chicken waste

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: Human gut stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_country: Tanzania

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: California; Calistoga

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13715

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: Caecum

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Amrita Vishwa Vidyapeetham


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Tenacibaculum sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG14915

ncbi_organism_name: uncultured bacterium


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_organism_name: Achromobacter xylosoxidans

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Streptomyces sp. NPDC058398

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidaminococcus intestini

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_assembly_level: Chromosome

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Treponema denticola

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Switzerland

ncbi_isolation_source: wound

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Institut Pasteur


ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: uncultured Neptunicoccus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Maridesulfovibrio sp.

ncbi_submitter: Lund University


ncbi_organism_name: Beijerinckiaceae bacterium


ncbi_organism_name: Candidatus Spongiisociaceae bacterium


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Prolixibacteraceae bacterium


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Piaui

ncbi_isolation_source: soil from Brazilian semiarid forest

ncbi_organism_name: Streptomyces caatingaensis

ncbi_strain_identifiers: CMAA 1322

ncbi_submitter: Kings College London


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: mBioClim


ncbi_organism_name: Escherichia coli

ncbi_submitter: WRAIR-Africa


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: bacterium

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_country: Brazil: Curitiba

ncbi_isolation_source: adult feces

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Instituto de Pesquisa Pele Pequeno Principe


ncbi_country: Ghana: Takoradi

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Riemerella anatipestifer

ncbi_submitter: Sichuan Agricultural University


ncbi_country: USA

ncbi_isolation_source: water

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: China: Wuhan

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter edaphi

ncbi_strain_identifiers: NL

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Nocardioides bigeumensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: FDA/CDC


ncbi_country: Antarctica: Mackay Glacier regions; Towle Glacier

ncbi_isolation_source: mineral soil

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Monash University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Neorhizobium sp. DAR64860/K0K1

ncbi_submitter: The University of Adelaide


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Enterococcus hirae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium frankenforstense

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: faeces

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: Shanghai MasScience Genomics Core


ncbi_organism_name: uncultured Dorea sp.


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Synechococcaceae bacterium WB8_1B_057

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Pooled sheep faecal samples collected from floor of farm

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: The REHAB Consortium


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Brevundimonas diminuta


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Thailand

ncbi_isolation_source: Nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: China

ncbi_isolation_source: ascites

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: Democratic Republic of the Congo

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: France: Normandy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_submitter: University of Galway


ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Gemmatimonas sp.

ncbi_submitter: EPFL


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: Microbiological Diagnostic Unit Public Health Laboratory, Melbourne


ncbi_submitter: Harbin Veterinary Research Institute


ncbi_organism_name: Thioalkalivibrio sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: University of Gothenburg

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_isolation_source: Wound/Abscess

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Utah Public Health Laboratory Infectious Disease submission group


ncbi_country: China:Qinghai province

ncbi_isolation_source: faecal of marmot

ncbi_organism_name: Nocardioides sp. cx-173

ncbi_submitter: China CDC


ncbi_country: USA: Washington; Hood Canal

ncbi_isolation_source: Shellfish Hatchery

ncbi_organism_name: Vibrio sp. T3Y01

ncbi_submitter: Oregon State University


ncbi_assembly_name: Brucella abortus 313

ncbi_country: Russia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: Throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: EMG


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA5345

ncbi_submitter: University of Queensland


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Staphylococcus schweitzeri

ncbi_submitter: Modernising Medical Microbiology


ncbi_country: USA

ncbi_isolation_source: Clinical; healthy; human skin

ncbi_organism_name: Roseomonas mucosa

ncbi_submitter: Igenbio, Inc


ncbi_country: Australia: Victoria

ncbi_isolation_source: Layer chicken liver; farm

ncbi_organism_name: Campylobacter hepaticus

ncbi_submitter: RMIT University


ncbi_isolation_source: pyoderma swab

ncbi_organism_name: Staphylococcus coagulans

ncbi_submitter: University of Edinburgh


ncbi_country: Canada: Aylmer; Quebec

ncbi_isolation_source: Root nodule from soybean plant inoculated with root zone soil from Amphicarpa bracteata

ncbi_organism_name: Bradyrhizobium cosmicum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Halothiobacillus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Alberta

ncbi_isolation_source: tissue sample from feedlot cattle

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangdong

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: Tubingen

ncbi_isolation_source: leaf

ncbi_organism_name: Frigoribacterium sp. Leaf415

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: China: Changsha

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces liliiviolaceus

ncbi_submitter: Hunan Institute of Agricultural Biotechnology


ncbi_isolation_source: Seawater

ncbi_organism_name: Psychromonas marina

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Terrisporobacter othiniensis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Inner Mongolia

ncbi_isolation_source: koumiss

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Inner Mongolia Agricultural Univercity


ncbi_isolation_source: metagenome

ncbi_organism_name: Thermotoga sp.

ncbi_submitter: University of Queensland


ncbi_country: USA: Rochester; NY

ncbi_isolation_source: urine

ncbi_submitter: URMC


ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_country: Spain: Santander

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: ITACYL


ncbi_country: Japan: Tokyo Bay; Honshu

ncbi_organism_name: Aliivibrio fischeri

ncbi_submitter: University of Hawaii-Manoa


ncbi_isolation_source: derived from human gut metagenome

ncbi_organism_name: Sutterella sp. CAG:521

ncbi_submitter: DTU


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Animal Quarantine Service, MAFF

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Aurantimonas sp.

ncbi_submitter: Xiamen University


ncbi_country: United Kingdom

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: SC


ncbi_organism_name: Longicatena caecimuris

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: Nares

ncbi_organism_name: Staphylococcus aureus F42568

ncbi_submitter: Broad Institute


ncbi_submitter: Ruijin Hospital


ncbi_country: France: Montpellier

ncbi_isolation_source: sputum lung

ncbi_strain_identifiers: Pa II.17

ncbi_submitter: University of Montpellier


ncbi_country: China: Xiaohegou

ncbi_isolation_source: adult honey bee worker gut

ncbi_organism_name: Gilliamella sp. B2828

ncbi_submitter: China Agricultural University


ncbi_country: Australia: Queensland

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: Colorado State U


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_country: France

ncbi_organism_name: Pseudomonas syringae

ncbi_strain_identifiers: CFBP 8693

ncbi_submitter: INRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus


ncbi_isolate: SPRUCE 6

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_strain_identifiers: SPRUCE 6

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Fontibacillus sp. BL9


ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: JAN153 BIOTECH INC.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_organism_name: Algihabitans albus

ncbi_submitter: University of Maryland Center for Environmental Science


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: University of Southern California

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Firmicutes bacterium UBA3941

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium UBA3941


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Southern Atlantic

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: rabbit gut


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Norway

ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_country: USA

ncbi_organism_name: Streptomyces ipomoeae 91-03

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: raw milk (from organic producers)

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: CIRM-BIA 251

ncbi_submitter: Brigham Young University


ncbi_isolation_source: burned soil

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: Colorado State University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Coprococcus comes

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Gungdong

ncbi_isolation_source: Catheter liquid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Alberta


ncbi_country: Malaysia

ncbi_isolation_source: water

ncbi_organism_name: Plesiomonas shigelloides

ncbi_submitter: University of Malaya


ncbi_organism_name: Romboutsia ilealis


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Lebanon: Beirut

ncbi_isolation_source: DTA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Lebanese American University


ncbi_isolation_source: blood

ncbi_organism_name: Sphingomonas sp. S-NIH.Pt1_0416

ncbi_submitter: NHGRI/NIH


ncbi_country: Belgium

ncbi_isolation_source: Orange lemonade

ncbi_organism_name: Gluconobacter albidus

ncbi_submitter: Ghent University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Giovannoniibacteriota;s__Candidatus Giovannonibacteria bacterium GW2011_GWB1_46_20


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Mucispirillum schaedleri ASF457

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_country: Denmark: Hovedstaden;Copenhagen

ncbi_isolation_source: Proficiency Panel Isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Denmark: Aalborg

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of Bath


ncbi_country: China: Tianjin

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Tsinghua University


ncbi_organism_name: Actinosynnema pretiosum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_organism_name: Actinobacillus equuli subsp. equuli

ncbi_submitter: Universiteit Gent


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Coriobacteriales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: water column

ncbi_organism_name: Vibrio sp. V32_P6A28T40

ncbi_submitter: Instituto de ecologia


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Clinical patient

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Pittsburgh Bacteriophage Institute


ncbi_submitter: \The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: caecum

ncbi_organism_name: Barnesiella sp. An55

ncbi_submitter: Veterinary Research Institute


ncbi_submitter: University College Dublin


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University hospital Lubeck


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: South China Agricultural University


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Queensland


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: University of Michigan, Ann Arbor


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environment

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China Hospital, Sichuan University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: OR

ncbi_isolation_source: ground turkey

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: FDA


ncbi_country: China: henan

ncbi_isolation_source: peanut land

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: hunan normal universiy

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_submitter: East China Normal University


ncbi_country: Malaysia

ncbi_isolation_source: blood infection

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_country: China: Fujian Province

ncbi_isolation_source: sputum

ncbi_submitter: Peking University People's Hospital


ncbi_country: China: Shandong Province

ncbi_isolation_source: soil sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M038S2

ncbi_submitter: Universite de Montreal


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Pretoria


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus avium

ncbi_submitter: BGI


ncbi_country: Japan: Sea of Japan

ncbi_isolation_source: ocean sediment

ncbi_organism_name: Micromonospora maris

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: uncultured Spirochaetaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Food and Drug Administration


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: South China Agriculture University


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Chicago; IL

ncbi_isolation_source: skin and soft tissue

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: Poland

ncbi_isolation_source: clinical sample

ncbi_submitter: National Medicines Institute


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_isolation_source: Mariane macroalgea Gelidium sp.

ncbi_submitter: marine college, shandong university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__environmental samples;s__uncultured Candidatus Altimarinota bacterium


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Reidsville; GA

ncbi_isolation_source: pink purslane

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_organism_name: Rhizobium altiplani

ncbi_submitter: Argonne National Laboratory


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Lactobacillus sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Germany

ncbi_submitter: Institute of Medical Microbiology, Immunology and Parasitology (IMMIP), University of Bonn, Sigmund-Freud-Str. 25, 53105 Bonn, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Staphylococcaceae;g__Staphylococcus;s__Staphylococcus aureus;x__Staphylococcus aureus subsp. aureus VC40


ncbi_country: Spain: Madrid

ncbi_isolation_source: Blood culture

ncbi_submitter: Ramon y Cajal Hospital


ncbi_country: India: Delhi

ncbi_isolation_source: River water

ncbi_strain_identifiers: IPE

ncbi_submitter: University of Delhi South Campus


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Vagococcus sp.

ncbi_submitter: China Agricultural University


ncbi_isolation_source: human skin

ncbi_organism_name: Haematobacter massiliensis

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Faecalibacterium sp.


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: USDA-ARS


ncbi_country: Ireland: Cork

ncbi_isolation_source: dairy

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_isolation_source: human gut

ncbi_organism_name: Phascolarctobacterium succinatutens

ncbi_submitter: EMG


ncbi_country: USA: California

ncbi_isolation_source: fish

ncbi_organism_name: Aeromonas sp. 1805

ncbi_submitter: USDA


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Treponema sp. UBA4307

ncbi_submitter: University of Queensland


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Oscillospiraceae bacterium


gtdb_type_species_of_genus: t

ncbi_organism_name: Thermomicrobium roseum DSM 5159

ncbi_submitter: J Craig Venter Institute


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Prevotellaceae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: IMG-taxon 2616644820 annotated assembly

ncbi_organism_name: Celeribacter baekdonensis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Heidelberg

ncbi_isolation_source: nasal swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Heidelberg University Hospital


ncbi_country: China: Hong Kong

ncbi_isolation_source: anammox reactor

ncbi_organism_name: bacterium

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: freshwater MAG --- Umea_bin-07027

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Pseudomonas sp. NPDC077186

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Boreal Moss Metagenome Coassembled MAG Green_AO_3

ncbi_organism_name: Oscillatoria nigro-viridis PCC 7112

ncbi_submitter: Universite de Sherbrooke


ncbi_country: Australia: Brisbane

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: The University of Queensland


ncbi_isolation_source: human stool

ncbi_submitter: DOE JGI


ncbi_country: Netherlands: Nijmegen

ncbi_isolation_source: C_S_N bioreactor biomass

ncbi_submitter: Radboud University Nijmegen


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Bacillales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA

ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O103:H2;x__Escherichia coli O103:H2 str. 2009C-3279


ncbi_country: Brazil

ncbi_isolation_source: kidney

ncbi_organism_name: Francisella orientalis

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pirellulaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Levyibacteriota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Levyibacteriota;x__unclassified Candidatus Levyibacteriota;s__Candidatus Levyibacteriota bacterium


ncbi_country: USA: WA

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_submitter: China Agricultural University


ncbi_country: Indian Ocean: Northwest Arabian Sea Upwelling Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Croceibacter sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Brevibacillus laterosporus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 111 (4-7039018)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 111 (4-7039018)


ncbi_country: Finland

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University


ncbi_country: USA: Maywood; IL

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: Loyola University Chicago


ncbi_country: Sweden: Baltic Sea coastal region; Kalmar Sound

ncbi_isolation_source: sea-surface microlayer sampled inside a natural surface slick

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Linnaeus University


ncbi_submitter: Bangladesh Agricultural University


ncbi_country: Nigeria:Outskirts of Abuja

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom: Norfolk

ncbi_isolation_source: oesophageal sample from healthy 31 year old female

ncbi_submitter: Quadram Institute BioScience

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Nanosynbacterales;f__Candidatus Nanosynbacteraceae;g__Candidatus Nanosynbacter;x__unclassified Candidatus Nanosynbacter;s__Candidatus Nanosynbacter sp. P2B_S1_bin.0.1


ncbi_organism_name: Shigella sonnei

ncbi_submitter: CDC


ncbi_country: Mexico: Mexico city

ncbi_submitter: Instituto Mexicano del Seguro Social CMN SigloXXI


ncbi_organism_name: Escherichia coli 09BKT024447

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Suriname: Paramaribo

ncbi_isolation_source: Pus left axilla

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Medical Center Groningen


ncbi_isolation_source: Urine

ncbi_submitter: WTSI


ncbi_country: Singapore

ncbi_isolation_source: not known

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Wellcome Sanger Institute


ncbi_country: Australia: Queensland

ncbi_isolation_source: Skin lesion swab

ncbi_organism_name: Staphylococcus agnetis

ncbi_submitter: The University of Queensland


ncbi_country: Ukraine

ncbi_isolation_source: fecal samples from 20 animals

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Jyvaskyla


ncbi_country: Spain

ncbi_isolation_source: urine

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Hospital Universitary 12 de octubre


ncbi_organism_name: Bradyrhizobium sp. NDS-1

ncbi_submitter: I2BC CNRS


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-241

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bryobacterales bacterium

ncbi_strain_identifiers: new MAG-241

ncbi_submitter: Micoorganism


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Xylanibacter caecicola

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_country: Sri Lanka: Kurunegala

ncbi_isolation_source: Exorhizosphere rice

ncbi_organism_name: Pseudomonas xantholysinigenes

ncbi_submitter: KU Leuven


ncbi_country: Nigeria

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus delbrueckii

ncbi_submitter: Max Rubner-Institut


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Toronto

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Toronto


ncbi_isolation_source: Blood culture

ncbi_organism_name: Enterobacter cloacae


ncbi_country: Indian Ocean: Central Indian Rise

ncbi_isolation_source: sediment

ncbi_organism_name: Croceicoccus mobilis

ncbi_submitter: Second Institute of Oceanography, State Oceanic Administration


ncbi_country: China

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Environmental

ncbi_organism_name: Burkholderia oklahomensis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Mangrovibacter sp. SLW1

ncbi_submitter: Indian Institute of Science Education and Research Kolkata


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Cardiff University School of Medicine


ncbi_country: USA: Virginia Beach

ncbi_isolation_source: marine sediment

ncbi_organism_name: Vibrio sp. VB16

ncbi_submitter: Geneva College


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangxi

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: China: Yangjiang

ncbi_isolation_source: Sewage

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Stutzerimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Boston College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_country: Ethiopia: Awash

ncbi_isolation_source: lung

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not available

ncbi_organism_name: Clostridioides difficile


ncbi_isolation_source: middle ear


ncbi_organism_name: Coprobacillus cateniformis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Czech Republic: Pribram

ncbi_isolation_source: throat

ncbi_organism_name: Acinetobacter modestus

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: South Korea: Woopo wetland

ncbi_isolation_source: freshwater

ncbi_organism_name: Hymenobacter rigui

ncbi_submitter: Guangdong Institute of Microbiology


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: sea water

ncbi_organism_name: Pelagibacteraceae bacterium AG-422-B15

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-256

ncbi_submitter: Broad Institute


ncbi_organism_name: Streptococcus pneumoniae


ncbi_assembly_name: Rumen uncultured genome RUG11015

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: France: Besancon

ncbi_isolation_source: blood

ncbi_submitter: University Hospital of Besancon


ncbi_country: Japan: Osaki Shimojima Island; Hiroshima

ncbi_organism_name: Nitratireductor sp. OM-1

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_country: South Korea

ncbi_isolation_source: feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_strain_identifiers: KCTC 5914

ncbi_submitter: Korea University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolate: isolate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: isolate

ncbi_submitter: Indian Biological Data Centre


ncbi_organism_name: Holdemanella porci


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_organism_name: uncultured Flavihumibacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Dankook University


ncbi_organism_name: Paenibacillus lautus

ncbi_submitter: UAEU


ncbi_organism_name: Serratia marcescens

ncbi_submitter: McMaster University


ncbi_organism_name: Vulcaniibacterium thermophilum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Italy: Florence

ncbi_isolation_source: bronchoaspiration material

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Nitrospirales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Mucilaginibacter sp.


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_country: Spain: Madrid

ncbi_submitter: Hospital Universitario 12 de Octubre


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: [Kitasatospora] papulosa

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_isolation_source: spacecraft assembly facility

ncbi_organism_name: Bhargavaea beijingensis

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: National University of Singapore


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Nitrospira sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptomyces sp. NPDC048224


ncbi_submitter: stanford university school of medicine


ncbi_assembly_name: IMG-taxon 2609459739 annotated assembly

ncbi_organism_name: Pseudomonas sp. Snoq117.2

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_country: USA: California; Lower Lake

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Korobacter versatilis

ncbi_submitter: Innovative Genomics Institute

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Korobacter;s__Candidatus Korobacter versatilis


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: Mexico: Mexico City

ncbi_isolation_source: Catheter from newborn

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_country: Indonesia: Mengeruda; Flores Island

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Actinospica acidithermotolerans

ncbi_submitter: Indonesia Endowment Fund for Education (LPDP)


ncbi_country: Switzerland

ncbi_isolation_source: Wine

ncbi_organism_name: Oenococcus oeni

ncbi_submitter: Australian Wine Research Institute


ncbi_isolation_source: lake water

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: Akkermansia muciniphila


ncbi_country: China

ncbi_isolation_source: organ

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: sichuan agricultural university


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: Limosilactobacillus reuteri


ncbi_organism_name: Pseudoxanthomonas sp.

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_isolation_source: Mashed potatoes

ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Zurich


ncbi_isolation_source: anaerobic bioreactor

ncbi_organism_name: uncultured Olsenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR ENVIRONMENTAL RESEARCH - UFZ


ncbi_country: Belgium: Merelbeke

ncbi_organism_name: Xanthomonas citri pv. fuscans

ncbi_strain_identifiers: LMG 826

ncbi_submitter: Institute for Agricultural and Fisheries Research (ILVO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. fuscans

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: San Fransisco

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Alistipes ihumii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: phyllosphere of Solanum tuberosum

ncbi_organism_name: Leucobacter tardus

ncbi_submitter: Sichuan university


ncbi_isolation_source: coastal sediment

ncbi_organism_name: Thermodesulfovibrionia bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Zhejiang University


ncbi_submitter: EMG


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Human vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Vaginal Microbiome Research Consortium


ncbi_country: Brazil: Araras

ncbi_isolation_source: Surveillance swab

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Chile: Santiago

ncbi_isolation_source: endotracheal aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: uterus

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Florida


ncbi_country: Brazil: Petrolina

ncbi_isolation_source: aquaculture system

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: UFMG


ncbi_country: Brazil: Goias; Cristalina; Cerrado sensu stricto area

ncbi_isolation_source: farm soil

ncbi_organism_name: Occallatibacter savannae

ncbi_submitter: University Catholic of Brasilia


ncbi_country: Brazil: Sorocaba

ncbi_isolation_source: Tracheal secretion


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: Caecum

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Corynebacterium variabile


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_isolation_source: caecum

ncbi_organism_name: Lactobacillus gallinarum

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Peptococcaceae bacterium


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Sphingomonas aurantiaca

ncbi_submitter: University of Tuebingen


ncbi_country: Singapore

ncbi_isolation_source: feces

ncbi_submitter: Temasek Life Sciences Laboratory Limited


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID161

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: bloodstream infection

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: LNCC


ncbi_country: USA: PA

ncbi_isolation_source: bovine cow intestine small

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Candidatus Absconditabacteria bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Absconditibacteriota;x__unclassified Candidatus Absconditabacteria;s__Candidatus Absconditabacteria bacterium


ncbi_organism_name: Kingella kingae

ncbi_submitter: University of Pennsylvania


ncbi_organism_name: Xylophilus ampelinus

ncbi_strain_identifiers: CECT 7646

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: South Korea

ncbi_isolation_source: hypertrophic pond

ncbi_organism_name: Pedobacter roseus

ncbi_submitter: Kyung Hee University


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: SC


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Sutterella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Halopseudomonas sabulinigri

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NITE)


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_country: Gambia

ncbi_organism_name: Escherichia coli

ncbi_submitter: Quadram Institute Biosciences


ncbi_organism_name: Porphyromonas loveana

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Poland: Szczecin

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: National Medicines Institute


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: INRA


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Nostoc sp.

ncbi_submitter: Duke University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Prochlorococcus sp.

ncbi_submitter: Dekas Lab, Stanford University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Children's Hospital of Fudan University


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: China-Japan Friendship Hospital, Beijing, China.


ncbi_organism_name: Bdellovibrio bacteriovorus

ncbi_submitter: college of veterinary medicine


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Texas A&M University


ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Microbacterium sp. YY-01

ncbi_submitter: Beijing Technology and Business University


ncbi_organism_name: uncultured Planctomicrobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Caenibius sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Capilliphycus salinus ALCB114379

ncbi_submitter: University of Sao Paulo


ncbi_isolate: S. mitis G22

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: S. mitis G22

ncbi_submitter: ITQB NOVA


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_submitter: Harvard University


ncbi_country: China: AnShun; Guizhou

ncbi_isolation_source: 0d patty soil

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Peking university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point A

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: McMaster University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_country: Atlantic Ocean

ncbi_isolation_source: intestine

ncbi_organism_name: Pseudoalteromonas sp. APC 3907

ncbi_submitter: University College Cork


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_submitter: The First Affiliated Hospital of Zhejiang University


ncbi_country: USA: Tennessee

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidimonas sp.

ncbi_submitter: University of Oklahoma


ncbi_organism_name: Caldilinea sp.

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: lab variant

ncbi_organism_name: Xylella fastidiosa

ncbi_submitter: Auburn University


ncbi_organism_name: Rhodothermales bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli PA47

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Polymorphospora rubra

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: China: Xiaochaidan Lake

ncbi_isolation_source: Tibetan lacustrine sediment

ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Mesobacillus boroniphilus JCM 21738

ncbi_submitter: The University of Tokyo


ncbi_submitter: EMG


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: Italy

ncbi_isolation_source: sacral ulcer swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Canada: Vancouver

ncbi_isolation_source: maternal vaginal swab fluid of a 29 year-old woman on Bifidus selective media agar

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Saskatchewan


ncbi_country: Taiwan

ncbi_isolation_source: urine; urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: National Yang Ming University


ncbi_country: USA: Crystal Geyser near Green River; Utah


ncbi_country: China: Shanxi

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Guangxi Institute of Fisheries


ncbi_organism_name: Kaistella sp.


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: Germany

ncbi_isolation_source: meat

ncbi_organism_name: Pseudolactococcus carnosus

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: SC


ncbi_country: USA:Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: 0.2-1 micron

ncbi_organism_name: Vibrio sp. F12

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Arenicellales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Oscillatoria sp. FACHB-1407

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey: Bandirma

ncbi_isolation_source: Mucilage

ncbi_submitter: Bursa Uludag University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Australia: New South Wales

ncbi_isolation_source: Farm workers

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Curtin University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Ferrithrix thermotolerans DSM 19514

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Denmark: Esbjerg W

ncbi_isolation_source: activated sludge from EsbW_18-Q3-R4-48

ncbi_organism_name: Candidatus Rubrivivax defluviihabitans

ncbi_submitter: Aalborg University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Nizhny Novgorod scientific and research institute of epidemiology and microbiology name acad.I.N. Bl


ncbi_country: India: Chennai

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_country: USA: PA

ncbi_isolation_source: colon (Equus ferus caballus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Beijing

ncbi_isolation_source: superworm

ncbi_organism_name: Intestinirhabdus alba

ncbi_submitter: Beijing Institute of Technology


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Leicester


ncbi_country: Belgium

ncbi_organism_name: Curtobacterium flaccumfaciens pv. flaccumfaciens

ncbi_strain_identifiers: GBBC 3406

ncbi_submitter: Institute for Agricultural, Fisheries and Food Research (ILVO)


ncbi_organism_name: Psychrobacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: chicken gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Parabacteroides distasonis


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BY112LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BY112LC


ncbi_country: Canada: Near Fort McMurray in northeastern Alberta

ncbi_isolation_source: waste water

ncbi_organism_name: Bacteriovoracaceae bacterium UBA6153

ncbi_submitter: University of Queensland


ncbi_assembly_name: IMG-taxon 2693429911 annotated assembly

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Second Affiliated Hospial of Zhejiang University, School of Medicine


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France

ncbi_isolation_source: stool

ncbi_organism_name: Dysgonomonas sp. Marseille-P4677

ncbi_submitter: IHU


ncbi_organism_name: Lactobacillus johnsonii


ncbi_organism_name: Helicobacter typhlonius


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFOXYB1_FULL_43_14


ncbi_organism_name: Bordetella parapertussis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Metabacillus sediminis

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_country: Thailand: Yala

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Roseobacter sp.

ncbi_submitter: University of Southern California


ncbi_country: USA: New Mexico

ncbi_organism_name: Bacillus anthracis

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Czech Republic: Brno

ncbi_isolation_source: river

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary and Pharmaceutical Sciences Brno


ncbi_country: Japan: Horonobe URL

ncbi_isolation_source: groundwater

ncbi_submitter: UC Berkeley


ncbi_country: South Korea: Sunchang

ncbi_isolation_source: Makgeolli

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Microbial Institute for Fermentation Industry


ncbi_country: Canada: Ontario

ncbi_submitter: Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta;x__Salmonella enterica subsp. enterica serovar Berta str. SA20103550


ncbi_organism_name: Hyphomicrobium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Puia sp.

ncbi_submitter: Zhejiang University


ncbi_country: USA: North Carolina; Durham

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: Slovenia

ncbi_isolation_source: Icecream

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: DGA CBRN Defence Center


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: China: Nanjing City; Jiangsu Province

ncbi_isolation_source: polluted soil

ncbi_organism_name: Chryseobacterium flavum

ncbi_submitter: University of the Free State


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: New York City

ncbi_isolation_source: skin-AD site

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_organism_name: Nodularia spumigena UHCC 0039

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nodulariaceae;g__Nodularia;s__Nodularia spumigena;x__Nodularia spumigena UHCC 0039


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_strain_identifiers: MRSA

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Leptospiraceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_submitter: Qatar University


ncbi_organism_name: Pseudomonas rhizophila

ncbi_submitter: University of Chemistry and  Technology, Prague


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Kitasatospora sp. NPDC096147

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo, A.C. (CIAD)


ncbi_organism_name: Agathobaculum sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: United State Department of Agriculture


ncbi_organism_name: [Kitasatospora] papulosa


ncbi_organism_name: uncultured Turneriella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-599

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acidobacteriia bacterium

ncbi_submitter: BILS


ncbi_isolation_source: nasopharynx


ncbi_organism_name: Novacetimonas hansenii

ncbi_submitter: Lodz University of Technology


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: freshwater MAG --- Erken-D4_bin-1102

ncbi_organism_name: uncultured Planctomycetaceae bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: urethra

ncbi_organism_name: Staphylococcus aureus M1149

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Biofilm from a full-scale sidestream partial nitritation anammox MBBR

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Lund University


ncbi_country: Nigeria: Sokoto

ncbi_isolation_source: urine

ncbi_organism_name: Bhargavaea massiliensis

ncbi_submitter: IHU Mediterranee Infection


ncbi_isolation_source: Mucosal surface Descending Colon

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: UNC-Chapel Hill


ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_isolation_source: food processing facility

ncbi_organism_name: Flavobacteriaceae bacterium PS02293

ncbi_submitter: Penn State University


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Pleomorphomonas sp.

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: China

ncbi_organism_name: Campylobacter upsaliensis

ncbi_submitter: Nanshan Center for Disease Control and Prevention, Shenzhen, China


ncbi_organism_name: Bacillus sp. MT(2024)

ncbi_submitter: Hunan Normal University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MT(2024)


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: uncultured archaeon

ncbi_submitter: Center for Microbial Communities


ncbi_country: Atlantic Ocean

ncbi_isolation_source: total DNA from escal light organ

ncbi_organism_name: Candidatus Enterovibrio escicola

ncbi_submitter: DEEPEND Consortium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Sphingomonas zeae

ncbi_submitter: Loyola University Chicago


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NBC_00433

ncbi_submitter: Technical University of Denmark


ncbi_country: USA: Pennsylvania

ncbi_isolation_source: fecal grab

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_44_12


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: NIH/NHGRI


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chung-Ang university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Streptococcus parasuis


ncbi_isolation_source: water

ncbi_organism_name: Francisella philomiragia

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Micropepsaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Acholeplasmataceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_country: Switzerland: Kanton Zug

ncbi_isolation_source: wastewater

ncbi_submitter: University of Zurich


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: BGI


ncbi_country: Canada: Ontario

ncbi_isolation_source: normally sterile site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Houston Methodist Research Institute


ncbi_country: Russia: Uzon Caldera; Kamchatka; Zavarzin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Dictyoglomus turgidum

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: BAL

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_country: China: Zhejiang

ncbi_isolation_source: asymptomatic patient

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: the First Affiliated Hospital of Medicine School, Zhejiang University


ncbi_country: Thailand: Nong Khai

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Chulalonfkorn university


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Streptococcus suis

ncbi_submitter: University of Queensland


ncbi_country: USA: Ithaca

ncbi_isolation_source: cows with mastitis at dairy farm

ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: UNICAMP


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bifidobacterium dentium ATCC 27679

ncbi_submitter: Baylor College of Medicine


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Halomonas salina


ncbi_country: USA: NE

ncbi_isolation_source: feces of feedlot cattle (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA


ncbi_country: United Kingdom

ncbi_isolation_source: Cider fermentation

ncbi_organism_name: Acetobacter fallax

ncbi_submitter: Ghent University


ncbi_country: Australia: Brisbane

ncbi_isolation_source: sputum

ncbi_organism_name: Prevotella histicola

ncbi_submitter: University of the Sunshine Coast


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Hospital Duesseldorf


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: field

ncbi_organism_name: Xanthomonas hortorum pv. vitians

ncbi_strain_identifiers: ICMP 1408

ncbi_submitter: The Pennsylvania State University


ncbi_country: Japan: Hokkaido

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Nigeria: Sokkoto State;Ilella

ncbi_isolation_source: ant gut

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: University of Jos


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The First Affiliated Hospital of Nanchang University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Canada: Alberta

ncbi_isolation_source: Herd 104

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 291

ncbi_submitter: University of Calgary


ncbi_isolation_source: lake water

ncbi_organism_name: Haliscomenobacteraceae bacterium

ncbi_submitter: University of Zurich


ncbi_organism_name: Gemmataceae bacterium

ncbi_submitter: International Centre for Terrestrial Antarctic Research, University of Waikato, New Zealand


ncbi_organism_name: Streptomyces sp. NPDC050619

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: North-Western State Medical University named after I.I. Mechnikov


ncbi_country: USA: New York State

ncbi_organism_name: Pectobacterium parmentieri

ncbi_submitter: Cornell University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 0 after weanning

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Acinetobacter bereziniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Anhui

ncbi_strain_identifiers: FRPDR

ncbi_submitter: University of Science and Technology of China


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Christensenella sp.


ncbi_country: USA: Seattle; WA

ncbi_isolation_source: feces from female

ncbi_organism_name: Escherichia coli TOP550-4

ncbi_submitter: National University of Singapore, Genome Institute of Singapore


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: China: Shanghai

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Providencia hangzhouensis

ncbi_submitter: University of Oxford


ncbi_country: New Zealand

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Massey University


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: NIZO food research


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Toho University


ncbi_country: China: Heihe; Heilongjiang

ncbi_isolation_source: soil

ncbi_organism_name: Bradyrhizobium ottawaense

ncbi_submitter: The Chinese University of Hong Kong


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_country: China: Banpo Antimony Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: Pseudomonas helleri

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Nigerium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Saccharothrix lopnurensis

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: UTHealth School of Public Health


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Affiliated Jinhua Hospital


ncbi_organism_name: Alloalcanivorax xenomutans

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Candidatus Adlerbacteria bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Adleribacteriota;x__unclassified Candidatus Adlerbacteria;s__Candidatus Adlerbacteria bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: International Centre for Terrestrial Antarctic Research, University of Waikato, New Zealand


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_assembly_name: Daer

ncbi_isolate: Daer

ncbi_organism_name: Candidatus Dasytiphilus stammeri

ncbi_strain_identifiers: Daer

ncbi_submitter: Max Planck Institute for Chemical Ecology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Dasytiphilus;s__Candidatus Dasytiphilus stammeri


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: BIOSCHAMP