ncbi_country: China: Guizhou; Banpo

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: Australia

ncbi_genome_representation: full

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The ithree institute


ncbi_organism_name: Bifidobacterium saguini DSM 23967

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Veterinary Research Institute


gtdb_representative: t

ncbi_country: Uganda: Stanley glacier

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Ramlibacter sp.

ncbi_submitter: University of Calgary


ncbi_assembly_level: Scaffold

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: Brazil

ncbi_organism_name: Pseudomonas juntendi

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Halovibrio sp.


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_country: South Africa

ncbi_isolation_source: Fresh produce

ncbi_strain_identifiers: UPMP 816

ncbi_submitter: University of Pretoria


ncbi_organism_name: Bacillus sp. 0102A

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 0102A


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 394

ncbi_submitter: SC


ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Legionella saoudiensis

ncbi_organism_name: Legionella saoudiensis

ncbi_refseq_category: reference genome

ncbi_submitter: URMITE


ncbi_organism_name: Helicobacter rodentium


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: China: Jiangxi; Yongping

ncbi_organism_name: Ferrovum sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Denmark: Mariagerfjord

ncbi_isolation_source: activated sludge from Mari_18-Q3-R65-66

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Aalborg University


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8817

ncbi_submitter: The Xanthomonas Threats project


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Boston; MA

ncbi_isolation_source: bronchial alveolar lavage

ncbi_organism_name: Staphylococcus aureus M0176

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Middletown

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_country: China: Nanjing

ncbi_isolation_source: tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: Italy: Verona

ncbi_isolation_source: Taleggio cheese

ncbi_organism_name: Leuconostoc mesenteroides subsp. dextranicum

ncbi_submitter: University of Verona


ncbi_country: Italy

ncbi_isolation_source: bulk tank milk

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Mesoflavibacter profundi

ncbi_submitter: Xiamen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Halomonas sp. LES1

ncbi_submitter: Griffith University


ncbi_organism_name: Candidatus Acidiferrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;x__unclassified Candidatus Acidiferrales;s__Candidatus Acidiferrales bacterium


ncbi_organism_name: Candidatus Avilachnospira avistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Avilachnospira;s__Candidatus Avilachnospira avistercoris


ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Italy: Bologna

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Policlinico Sant'Orsola-Malpighi


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Salmonella enterica CVM N32053-SQ v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Ground Turkey

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_country: Switzerland: Stein AR

ncbi_isolation_source: lung

ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: University of Zurich


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Parvularculaceae bacterium

ncbi_submitter: Lund University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Poultry

ncbi_organism_name: Campylobacter coli


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_assembly_level: Chromosome

ncbi_country: India: Assam; Sivasagar

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Assam University, Silchar


ncbi_assembly_level: Complete Genome

ncbi_submitter: Dept. of  Diagnosis for Infectious Disease

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Campylobacterota;c__Epsilonproteobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter;s__Campylobacter jejuni;sb__Campylobacter jejuni subsp. jejuni;x__Campylobacter jejuni subsp. jejuni ICDCCJ07001


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Hungatella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: Mexico: Culiacan; Sinaloa

ncbi_isolation_source: Humaya River; La Guasima

ncbi_submitter: Centro de Investigacion en Alimentacion y Desarrollo A. C.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Yoruba


ncbi_country: Germany

ncbi_isolation_source: Rectal swab/stool

ncbi_submitter: SurvCARE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_assembly_name: freshwater MAG --- KR_bin-3591

ncbi_organism_name: uncultured Spartobacteria bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Spartobacteria;x__environmental samples;s__uncultured Spartobacteria bacterium


ncbi_assembly_name: Rumen uncultured genome RUG13800

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: The First Affiliated Hospital of Nanchang University, Nanchang University


ncbi_organism_name: Alteromonadaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Angustibacter sp. McL0619

ncbi_submitter: New Zealand Forest Research Institute


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: UIUC


ncbi_organism_name: Candidatus Binatus sp.

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy: d__Bacteria;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;o__Candidatus Binatales;f__Candidatus Binataceae;g__Candidatus Binatus;x__unclassified Candidatus Binatus;s__Candidatus Binatus sp.


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Nitratireductor rhodophyticola

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Rhodoluna sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Rhodoluna;x__environmental samples;s__uncultured Rhodoluna sp.


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: University of Porto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Saprospira sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: bacterium

ncbi_submitter: EPFL


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Rubripirellula sp.

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Alistipes shahii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA

ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella sp. 1SOBk13mer

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Tagaea sp.

ncbi_submitter: 2022-2023 NSF-IRES Lake Victoria Research Consortium Participants


ncbi_isolation_source: cold seep

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: terrestrial

ncbi_organism_name: Clostridium sp.

ncbi_submitter: University of Queensland


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Ithaca; NY

ncbi_isolation_source: Apple dumpster

ncbi_organism_name: Acetobacter persici

ncbi_submitter: Cornell University


ncbi_country: India

ncbi_isolation_source: Blood culture

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_country: Russia: Nizhny Novgorod

ncbi_submitter: Academician I.N.Blokhina Nizhny Novgorod Scientific Research Institute of Epidemiology and Microbiol


ncbi_assembly_name: Rumen uncultured genome RUG13773

ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; South

ncbi_isolation_source: marine hydrothermal sulfide sediment TVG12

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 256

ncbi_submitter: SC


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3693-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: Aachen

ncbi_isolation_source: gastrointestinal tract

ncbi_organism_name: Claveliimonas monacensis

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_organism_name: Pseudobutyrivibrio sp. LB2011

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Canada: Halifax

ncbi_isolation_source: Lower respiratory tract

ncbi_organism_name: Streptococcus pseudopneumoniae

ncbi_submitter: Region Zealand


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: State Research Center of Dermatovenerology and Cosmetology


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_submitter: EMG


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Beijing

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: General Hospital


ncbi_country: Thailand

ncbi_organism_name: Staphylococcus argenteus


ncbi_organism_name: Escherichia coli

ncbi_submitter: Saudi food and drug authority


ncbi_organism_name: Thermogutta sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Chamaesiphon sp. VAR_4_metabat_408

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Ardenticatenaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: Greece

ncbi_isolation_source: creosote-polluted soil

ncbi_submitter: US DOE Joint Genome Institute


ncbi_country: USA: Boston; MA

ncbi_isolation_source: laboratory evolution

ncbi_submitter: Harvard University


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_organism_name: Mammaliicoccus vitulinus

ncbi_submitter: KAUST


ncbi_country: China: Shandong Province

ncbi_isolation_source: Apple rhizosphere soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Shandong Agricultural  University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Pseudoflavonifractor gallinarum

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Spain: Cadiz

ncbi_isolation_source: Central catheter

ncbi_submitter: Hospital Universitario Puerta del Mar


ncbi_organism_name: Enterobacter sp. MGH 4

ncbi_strain_identifiers: MGH 4

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter sp. MGH 4


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Kasetsart University


ncbi_organism_name: Eikenella halliae

ncbi_submitter: Amager and Hvidovre Hospital


ncbi_country: Thailand: Ubon/Trakam

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_submitter: EMG


ncbi_country: Australia: Brisbane


ncbi_organism_name: Cetobacterium sp.

ncbi_submitter: China Agricultural University


ncbi_country: South Korea: Jeju islands

ncbi_organism_name: Cognatilysobacter terrigena

ncbi_submitter: College of Agriculture and Life Sciences, Kyungpook National University


ncbi_country: France

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: INSTITUT PASTEUR


ncbi_organism_name: Sporichthyaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Saint Louis; MO

ncbi_isolation_source: stool

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Washington University in St. Louis


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_isolation_source: lake water

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Turkey: Gonen

ncbi_isolation_source: hot spring

ncbi_organism_name: Anoxybacillus gonensis

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_country: Japan

ncbi_organism_name: Parageobacillus thermoglucosidasius

ncbi_submitter: University of the Witwatersrand


ncbi_country: USA: MD

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_country: India

ncbi_isolation_source: Slit Skin

ncbi_organism_name: Mycobacterium leprae

ncbi_submitter: National JALMA Institute for Leprosy and Other Mycobacterial Diseases


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium casei

ncbi_submitter: Universidad de Leon (Spain)


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: Universidad Austral de Chile


ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Smithellaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Senegalimassilia sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Canada: Quebec City

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: South Korea: Gochang

ncbi_isolation_source: rhizosphere of ginseng

ncbi_organism_name: Paraburkholderia ginsengiterrae

ncbi_submitter: Institute of Environmental Health


ncbi_organism_name: Rhizobium rhizogenes

ncbi_submitter: Oregon State University


ncbi_isolation_source: Seawater

ncbi_organism_name: uncultured Pseudomonadales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Yakult Central Institute


ncbi_country: China: Shanghai

ncbi_organism_name: Escherichia coli SHECO001

ncbi_submitter: University of Maryland, College Park


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Micrococcales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Bradyrhizobium japonicum

ncbi_strain_identifiers: USDA 58

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC056661

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA

ncbi_organism_name: Streptomyces sp. SID5789

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Dinoroseobacter sp.

ncbi_submitter: University of Bristol


ncbi_country: China: Tianjin

ncbi_isolation_source: herbs sample

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Tianjin University of Traditional Chinese Medicine


ncbi_country: China: Shenzhen

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Amnibacterium flavum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Calgary


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Eubacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain

ncbi_isolation_source: gut

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hospital Ramon y Cajal


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_country: Burkina Faso

ncbi_isolation_source: eggs

ncbi_organism_name: Salmonella enterica

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Anaerotruncus sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0922

ncbi_submitter: Broad Institute


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences, Chinese Academy of Agricultural Sciences


ncbi_organism_name: Aeromonas rivipollensis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: uncultured Cloacibacillus sp.


ncbi_organism_name: Candidatus Nanosyncoccus sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__Candidatus Nanosyncoccus;x__unclassified Candidatus Nanosyncoccus;s__Candidatus Nanosyncoccus sp.


ncbi_organism_name: Pseudoalteromonas tetraodonis

ncbi_submitter: University of East Anglia


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_submitter: Sao Paulo State University-FCAVUnesp

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Michigan


ncbi_country: New Zealand

ncbi_isolation_source: poultry feces

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Otago


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: South Korea: Jeju Island

ncbi_isolation_source: soil

ncbi_organism_name: Deinococcus radiodurans

ncbi_submitter: Korea Atomic Energy Research Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Pittsburgh


ncbi_submitter: Medicine / Division of Infectious Diseases, University of North Carolina


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Ningxia Medical University General Hospital


ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_submitter: Wayne State University


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Grupo de Microbiologia Integrativa, Facultad de Ciencias, Universidad de Chile


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_country: Argentina

ncbi_isolation_source: bull prepuce

ncbi_organism_name: Campylobacter sputorum subsp. sputorum

ncbi_submitter: Institut Pasteur Montevideo


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG522

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_submitter: University of Southern California


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudomonas sp. LAMO17WK12:I2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Campylobacter sp. US24a

ncbi_submitter: University of Padova


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: lake water

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: St. Joseph; Minnesota

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: intestinal content

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: Single cell amplified by MDA; raw seawater

ncbi_organism_name: Prochlorococcus sp. HOT208_60m_813G15

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Bangladesh

ncbi_isolation_source: environmental

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Alberta


ncbi_isolation_source: Mariane sediment

ncbi_organism_name: uncultured Woeseiaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: United Kingdom:Papworth

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: SC


ncbi_country: Germany: Essen

ncbi_isolation_source: Stream model ecosystem (AquaFlow mesocosm system)

ncbi_organism_name: Methylotenera sp.

ncbi_submitter: CRC RESIST


ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: United Kingdom:Wales

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Centro de Astrobiologia


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Kitasatospora sp. NPDC094016

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Beijing

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Chinese PLA General Hospital


ncbi_organism_name: uncultured Olleya sp.

ncbi_submitter: EMG


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_country: South Korea: Seoul

ncbi_isolation_source: air conditioner

ncbi_organism_name: Naumannella sp. ID2617S

ncbi_submitter: Sangji University


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Dorea sp.


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National Health Research Institutes


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: uncultured Oceanospirillaceae bacterium


ncbi_country: USA

ncbi_isolation_source: skin

ncbi_organism_name: Corynebacterium hadale

ncbi_strain_identifiers: ACRQI

ncbi_submitter: NHGRI/NIH


ncbi_isolation_source: gut

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: USA: St. Louis; MO

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: Washington University School of Medicine in St. Louis


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: Pondicherry University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_assembly_name: freshwater MAG --- Erken-D11_bin-1604

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Estonia

ncbi_isolation_source: tracheal aspirate

ncbi_strain_identifiers: HUM-9 repl1

ncbi_submitter: University of Tartu


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge tissue; high temperature high CO2

ncbi_submitter: Australian Institute of Marine Science


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Candidatus Neomicrothrix parvicella


ncbi_country: China

ncbi_isolation_source: manure wastewater

ncbi_organism_name: Escherichia coli

ncbi_submitter: Chinese Academy of Sciences


ncbi_isolate: MEAT

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: MEAT;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_country: Atlantic Ocean: Western Atlantic Ocean

ncbi_organism_name: Nitrospina gracilis Nb-211

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


gtdb_type_species_of_genus: t

ncbi_organism_name: Exiguobacterium aurantiacum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium aurantiacum


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Utah

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Intermountain Healthcare


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Linyi University


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Chicago

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-679-K21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: China: Jinhua

ncbi_isolation_source: urine

ncbi_submitter: Jinhua Central Hospital


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis NM2781

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Hydrogenophaga sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Malan

ncbi_organism_name: Rufibacter sp. LB8

ncbi_submitter: BGI-Qingdao


ncbi_country: India

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus FVRH6067

ncbi_submitter: Broad Institute


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_country: France: Nimes

ncbi_isolation_source: sputum from cystic fibrosis patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Montpellier Service de Microbiologie et Hygiene Hospitaliere CHU Nimes


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lawsonibacter sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: China: Dabaoshan; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_organism_name: Haemophilus sp. HN_Hi07

ncbi_submitter: Hunan Children's hospital


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Klebsiella sp. 1SOBk2mer

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 630

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Klebsiella pneumoniae


ncbi_organism_name: Blautia wexlerae

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: USA: IL

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Winogradskyella sp.

ncbi_submitter: Tang lab


ncbi_isolation_source: meat

ncbi_organism_name: Pseudomonas bubulae

ncbi_strain_identifiers: Pseudomonas parafragi

ncbi_submitter: CEBITEC


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Proteus mirabilis


ncbi_country: China: Hangzhou

ncbi_isolation_source: fecal sample

ncbi_organism_name: Salmonella sp. S110-31002

ncbi_submitter: Zhejiang University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Children's Hospital of Shanghai


ncbi_country: Ethiopia: Amhara; North Gondar

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: China: Jiangsu Province; Yancheng City

ncbi_isolation_source: stool

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Gaiellaceae bacterium


ncbi_organism_name: Ezakiella coagulans

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Tissierellia;x__Tissierellia incertae sedis;g__Ezakiella;s__Ezakiella coagulans


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium RIFCSPHIGHO2_01_FULL_46_25


ncbi_submitter: University of California Berkeley


ncbi_organism_name: Salmonella sp. 2021_1100

ncbi_submitter: Ministry of Food and Drug Safety


ncbi_country: China: Jiangxi; Dexing

ncbi_isolation_source: sediment

ncbi_organism_name: Thermoactinomycetaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Pacific Ocean: South China Sea

ncbi_isolation_source: deap sea cold seep sediment

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CHINESE ACADEMY OF SCIENCES


ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-043 (Harlan)


ncbi_isolation_source: arctic soil

ncbi_organism_name: Arcticibacter svalbardensis MN12-7

ncbi_submitter: Centre for Cellular and Molecular Biology


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neglectibacter sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: Isolate 15

ncbi_submitter: Kalmar county hospital


ncbi_organism_name: Candidatus Skiveiella danica

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: Brazil

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Israel

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: NATIONAL INSTITUTE OF HEALTH DR. RICARDO JORGE


ncbi_organism_name: Proteus columbae

ncbi_submitter: Washington University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Chlamydia trachomatis L1/224

ncbi_submitter: Sanger Institute


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__unclassified Gemmiger;s__Gemmiger sp.


ncbi_country: China: Jiangsu

ncbi_isolation_source: sewage

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus sp.


ncbi_isolation_source: Groin

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: UNIVERSITY OF TROMSO


ncbi_organism_name: Candidatus Faecisoma sp.

ncbi_submitter: Agriculture and Agri-Food Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__Mycoplasmatota incertae sedis;g__Candidatus Faecisoma;x__unclassified Candidatus Faecisoma;s__Candidatus Faecisoma sp.


ncbi_organism_name: Lachnospirales bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Spain: Badalona

ncbi_isolation_source: Trachealaspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_country: South Africa: University of Cape Town; Rondebosch

ncbi_isolation_source: Thiocyanate bioreactor

ncbi_organism_name: Thiobacillus sp. SCN 63-57

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: rectal swab

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: icddr,b


ncbi_submitter: IFSC USP


ncbi_country: United Kingdom

ncbi_isolation_source: Pooled pig fecal samples collected from floor of farm

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: The REHAB Consortium


ncbi_country: Denmark: Kgs. Lyngby

ncbi_isolation_source: pool of bioreactors CSTR01a; CSTR02a; and CSTR03a; thermophilic anaerobic digestion of cattle manure in continuous reactors for biogas production (methane)

ncbi_organism_name: Clostridiaceae bacterium DTU059

ncbi_submitter: Technical University of Denmark


ncbi_country: China: Shenzhen

ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: BGI


ncbi_country: Spain: Asturias

ncbi_organism_name: Lactococcus lactis

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Desulfovibrio sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Xanthomonas campestris

ncbi_strain_identifiers: WHRI 5219A

ncbi_submitter: University of Warwick


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Acidaminococcus intestini


ncbi_country: USA: WA

ncbi_isolation_source: shoulder synovium tissue from a patient with failed shoulder athroplasty

ncbi_organism_name: Cutibacterium acnes P15

ncbi_submitter: Bumgarner laboratory, Department of Microbiology, University of Washington


ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Priestia megaterium Q3

ncbi_submitter: Hunan Agricultural University


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Candidatus Peribacteria bacterium

ncbi_submitter: The University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__unclassified Candidatus Peribacteria;s__Candidatus Peribacteria bacterium


ncbi_organism_name: uncultured Luteimonas sp.


ncbi_country: Atlantic Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;g__Candidatus Galligastranaerophilus;s__Candidatus Galligastranaerophilus intestinigallinarum


ncbi_country: Germany

ncbi_isolation_source: environmental swab sponge powder infant formula manufacturing facility

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Legionella cherrii


ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: rat gut

ncbi_organism_name: Faecalibacterium sp. UBA7177

ncbi_submitter: University of Queensland


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_assembly_name: freshwater MAG --- Umea2p3_bin-1231

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Ferrovum sp.

ncbi_submitter: BILS


ncbi_country: South Korea: Suwon

ncbi_isolation_source: soil

ncbi_organism_name: Zoogloea dura

ncbi_submitter: Kyonggi University


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Marivita cryptomonadis

ncbi_submitter: Shantou University


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_country: Italy

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Istituto Superiore di Sanita'


ncbi_country: Norway

ncbi_isolation_source: Urine

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_country: Australia: Sydney

ncbi_organism_name: Escherichia coli

ncbi_submitter: OUTBREAK


ncbi_country: South Korea: Seoul

ncbi_organism_name: Sutterellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; 10% subassembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__unclassified Deltaproteobacteria;s__Deltaproteobacteria bacterium RIFCSPLOWO2_01_44_7


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_country: USA:New York City

ncbi_isolation_source: plastic

ncbi_organism_name: Acinetobacter nosocomialis


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_assembly_name: freshwater MAG --- Umea_bin-05280

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Variovorax paradoxus

ncbi_submitter: Aarhus University


ncbi_organism_name: Aeromonas media

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_submitter: Technical University of Munich


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: uncultured Clavibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Ilumatobacteraceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Pantoea agglomerans

ncbi_strain_identifiers: Et

ncbi_submitter: Addis Ababa University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Medical City


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: food producing environment surface

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Istituto Zooprofilattico Sperimentale dell'Umbria e delle Marche


ncbi_country: China: Zhijin Polymetallic Mine; Guizhou Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_submitter: EMG


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Manhattan


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Nanyang Technological University


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Nocardioides sp. Root682

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_organism_name: Deinococcus lichenicola

ncbi_submitter: Yunnan University


ncbi_organism_name: Xanthomonas sp. WHRI 7065

ncbi_strain_identifiers: WHRI 7065

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Switzerland

ncbi_isolation_source: Gruyere

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Bern


ncbi_assembly_name: Salmonella enterica CVM N45954 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Turkey

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Heidelberg

ncbi_submitter: FDA


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: Germany: Zoo of Hamburg

ncbi_isolation_source: Feces of six-years-old elephant

ncbi_organism_name: Clostridiales bacterium UBA1777

ncbi_submitter: University of Queensland


ncbi_country: India

ncbi_submitter: SC


ncbi_country: USA: California

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. 134

ncbi_submitter: Oregon State University


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_isolation_source: feces

ncbi_submitter: AAFC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Intestinimonas;s__Intestinimonas massiliensis (ex Afouda et al. 2020)


ncbi_organism_name: Nocardioides sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: Finland

ncbi_isolation_source: Feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: EMG


ncbi_organism_name: uncultured Desulfovibrio sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Faecalibaculum rodentium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: medizinische mikrobiologie und hygiene universitaetsklinikum tuebingen


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: FDA/CDC


ncbi_country: USA: Michigan

ncbi_isolation_source: Hospital hot water tap

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Virginia Polytechnic Institute and State University


ncbi_isolate: Faeces

ncbi_isolation_source: ROAR

ncbi_organism_name: Escherichia coli

ncbi_submitter: UMR 1137 IAME


ncbi_organism_name: Phycisphaerales bacterium JB043

ncbi_submitter: JNTUH


ncbi_isolation_source: Proximal colon


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: vaginal/rectal

ncbi_organism_name: Staphylococcus sp. HMSC063A07

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: Shewanella sp. MBTL60-007

ncbi_submitter: Toho University


ncbi_country: China: Beijing

ncbi_organism_name: Prescottella equi

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, China CDC


ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Nomuraibacteriota;s__Candidatus Nomurabacteria bacterium RIFCSPLOWO2_01_FULL_43_15


ncbi_country: Sweden

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli UMEA 3662-1

ncbi_submitter: Broad Institute


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University Hong Kong


ncbi_isolation_source: mouse gut metagenome


ncbi_country: United Kingdom: Norwich

ncbi_organism_name: Corynebacterium gallinarum

ncbi_submitter: Quadram Institutte


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Agroscope

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;x__unclassified Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis complex sp. N0072


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_assembly_name: Rumen uncultured genome RUG13686

ncbi_isolation_source: cattle rumen

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Taean ocean

ncbi_organism_name: Flagellimonas algicola

ncbi_submitter: Chung-Ang University


ncbi_country: France

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Indonesia

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: Instituto Adolfo Lutz


ncbi_strain_identifiers: MDCL 103

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_country: USA: Washington

ncbi_isolation_source: marine

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M University - Corpus Christi


ncbi_organism_name: Staphylococcus epidermidis


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Megasphaera elsdenii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Gastranaerophilales;x__unclassified Candidatus Gastranaerophilales;s__Candidatus Gastranaerophilales bacterium


ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: RIMG, Kochi University


ncbi_country: South Korea: Busan

ncbi_isolation_source: seawater

ncbi_organism_name: Aliiroseovarius salicola

ncbi_submitter: Keimyung University


ncbi_organism_name: Elizabethkingia meningoseptica

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bacillus velezensis

ncbi_strain_identifiers: FAIRING 3B-1.2

ncbi_submitter: Jet Propulsion Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Exiguobacterium acetylicum

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium acetylicum


ncbi_isolation_source: Kefir grains

ncbi_organism_name: Lactobacillus kefiranofaciens subsp. kefiranofaciens

ncbi_submitter: Korea University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Acetobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Pectobacterium carotovorum

ncbi_submitter: Pennsylvania State University


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Canada: Ontario

ncbi_isolation_source: bacon flakes

ncbi_submitter: Public Health Agency of Canada

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria monocytogenes;x__Listeria monocytogenes serotype 1/2c;x__Listeria monocytogenes serotype 1/2c str. 10-5025


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: University of British Columbia


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: EMG


ncbi_isolation_source: Intestine

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Methyloglobulus sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: Bulgaria: Black Sea

ncbi_isolation_source: Brackish water; Black Sea St. 307

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_organism_name: Prevotella sp.


ncbi_country: Australia: Yorketown; South Australia

ncbi_isolation_source: bacterial gall

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Australian Government’s Cooperative Research Centres Program


ncbi_country: Australia: Port Hacking NRS

ncbi_isolation_source: Sea water

ncbi_organism_name: Synechococcus sp. MU1611

ncbi_submitter: Macquarie University


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter junii

ncbi_submitter: dianzhenduan


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: WTSI


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus taiwanensis


ncbi_country: Austria: Lower Austria

ncbi_isolation_source: broiler chicken gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Biomin Research Center


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Desulfarculaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Moheibacter sp.

ncbi_submitter: Delft University of Technology


ncbi_organism_name: Enterobacter kobei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Lactobacillus paragasseri

ncbi_submitter: MAMI


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Bacillus bombysepticus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Terriglobus sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Streptomyces griseorubiginosus


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Owenweeksia sp.

ncbi_submitter: Ocean University of China


ncbi_organism_name: Caldicoprobacterales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Enterococcus sp. DIV0872a

ncbi_submitter: Broad Institute


ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: China: Guizhou; Jiuan

ncbi_isolation_source: sediment

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: Red Sea water column Station 169 - depth 50m

ncbi_organism_name: Actinobacteria bacterium REDSEA-S36_B12

ncbi_submitter: King Abdullah University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__unclassified Actinomycetota;s__Actinobacteria bacterium REDSEA-S36_B12


ncbi_organism_name: Desulfarculia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou university


ncbi_organism_name: Marinoscillum sp.


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_country: United Kingdom: Newcastle

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux


ncbi_isolation_source: fermented milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_strain_identifiers: CIRM-BIA 1058

ncbi_submitter: Brigham Young University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Phycisphaera mikurensis NBRC 102666

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Phycisphaerae;o__Phycisphaerales;f__Phycisphaeraceae;g__Phycisphaera;s__Phycisphaera mikurensis;x__Phycisphaera mikurensis NBRC 102666


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core A

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: China: Guangdong; Fankou

ncbi_organism_name: Acidimicrobiaceae bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Phoenix; AZ

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Pirellulales bacterium

ncbi_submitter: Oklahoma State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fudan University Huashan Hospital


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: South Korea

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Veillonellaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_assembly_name: Campylobacter jejuni CVM N279 v1.0

ncbi_country: USA: CT

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: CVM N279

ncbi_submitter: FDA


ncbi_country: Malaysia: Sungkai; Perak

ncbi_isolation_source: alkaline hot spring water

ncbi_submitter: Universiti Teknologi Malaysia - Malaysia


ncbi_country: Canada

ncbi_submitter: Swansea University


ncbi_assembly_name: Rumen uncultured genome RUG14208

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: Distal colon

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Chitinophagaceae bacterium


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_isolation_source: ecological

ncbi_organism_name: Sulfobacillus sp.

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;f__Clostridiales Family XVII. Incertae Sedis;g__Sulfobacillus;x__unclassified Sulfobacillus;s__Sulfobacillus sp.


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Stutzerimonas stutzeri


ncbi_organism_name: Escherichia coli

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Candidatus Fimenecus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Fimenecus;x__unclassified Candidatus Fimenecus;s__Candidatus Fimenecus sp.


ncbi_country: USA: Tennessee

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Vanderbilt University Medical Center


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: uncultured Paraprevotella sp.


ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: University of Copenhagen


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Planctomycetales bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_assembly_name: freshwater MAG --- Erken-D7_bin-0817

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Burkholderiaceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: Japan

ncbi_isolation_source: coldroom for food storage

ncbi_organism_name: Pseudomonas psychrophila

ncbi_submitter: Zentralinstitut fuer Ernaehrungs- und Lebensmittelforschung (ZIEL), WZW, TUM


ncbi_country: Poland: Wroclaw

ncbi_isolation_source: clinical sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institiute


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: zhejiang sci-tech university


ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Kagoshima university


ncbi_country: South Korea: Gangwon-do

ncbi_isolation_source: sea

ncbi_organism_name: Blastopirellula sp. J2-11

ncbi_submitter: Chung-Ang university


ncbi_country: China: Fujian

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mycoplasmatales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Alberta

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of British Columbia


ncbi_organism_name: Edaphosphingomonas fennica

ncbi_submitter: UNESP-FCAV


ncbi_assembly_name: freshwater MAG --- F4_bin-342

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: Taiwan

ncbi_isolation_source: hospital

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_submitter: Ren Ji Hospital, Shanghai Jiao Tong University School of Medicine


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: blood

ncbi_submitter: SC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: China

ncbi_submitter: School of Medicine, Shanghai Jiaotong University


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_submitter: University of Zurich


ncbi_country: China: Beijing

ncbi_submitter: China-Japan Friendship Hospital


ncbi_country: Republic of the Congo

ncbi_submitter: University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas phaseoli;x__Xanthomonas phaseoli pv. manihotis;x__Xanthomonas phaseoli pv. manihotis str. ORST17


ncbi_submitter: Quadram Institute Bioscience


ncbi_country: Hong Kong

ncbi_isolation_source: Sucralose(TGS)-degrading consortia seeded with activate sludge sampled from 2 local WWTPs

ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: China: Chengdu; Sichuan

ncbi_isolation_source: environmental surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: single cell amplified by MDA; seawater

ncbi_organism_name: Prochlorococcus sp. AG-335-I21

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: sewage

ncbi_organism_name: Aeromonas sp. Y318-1

ncbi_submitter: Soochow University


ncbi_submitter: University of California at Davis


ncbi_country: Denmark

ncbi_isolation_source: Pus from hand infection

ncbi_organism_name: Mycoplasma phocimorsus

ncbi_submitter: Statens Serum Institute


ncbi_organism_name: Deltaproteobacteria bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oribacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli O157:H7

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Tanzania

ncbi_isolation_source: Wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Mesonia mobilis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Brazil: Olinda

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces olindensis

ncbi_strain_identifiers: DAUFPE 5622

ncbi_submitter: TU Kaiserslautern


ncbi_organism_name: uncultured Collinsella sp.


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 4982

ncbi_submitter: Ghent University


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Liaocheng University


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: bacterium

ncbi_submitter: University of Alberta


ncbi_organism_name: Hafnia paralvei

ncbi_submitter: Research Center for Eco-Environmental Sciences, Chinese Academy of Sciences


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: dtu national food institute


ncbi_organism_name: Streptomyces mirabilis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces olivaceus


ncbi_isolation_source: marine

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Queensland


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_submitter: AAFC


ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Lentisphaeria bacterium


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Micromonospora gifhornensis


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Calditrichota bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Netherlands

ncbi_organism_name: Staphylococcus aureus VET0251R

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: bacterium 1XD8-76

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Indian Ocean:Arabian Sea ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured Enterobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Waltera acetigignens

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_country: Canada: Ontario

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_organism_name: Streptomyces tibetensis


ncbi_country: Czech Republic: Rimov Reservoir

ncbi_isolation_source: freshwater

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_country: Lebanon

ncbi_organism_name: Streptococcus pneumoniae

ncbi_strain_identifiers: STREP-LEB

ncbi_submitter: LAU


ncbi_assembly_name: freshwater MAG --- AlinenSediments_bin-0574

ncbi_isolation_source: freshwater sediment

ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: BILS


ncbi_country: China

ncbi_isolation_source: gastric juice

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Fiji

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: Antarctica: Cotton Glacier

ncbi_organism_name: Janthinobacterium sp. CG_23.4

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan: Tokachi area; Obihiro

ncbi_organism_name: Campylobacter jejuni subsp. jejuni

ncbi_submitter: Laboratory of Food microbiology and Immunology


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Kyung Hee University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Erythrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M16220

ncbi_submitter: Broad Institute


ncbi_country: China: Shandong

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: Nasophaynx

ncbi_submitter: SC


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Gardnerella swidsinskii

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_organism_name: Thermoanaerobaculia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Tennessee; Oak Ridge Field Research Center

ncbi_isolation_source: groundwater

ncbi_organism_name: Pseudomonas sp. FW305-25

ncbi_submitter: ENIGMA - Ecosystems and Networks Integrated with Genes and Molecular Assemblies


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: nasal swab

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: China: lake Taihu

ncbi_isolation_source: cyanobacterial aggregates

ncbi_organism_name: Rhizobium sp. TH135

ncbi_submitter: Nanjing Institute of Geography and Limnology


ncbi_organism_name: Paracoccus haematequi

ncbi_submitter: INSTITUT PASTEUR


ncbi_country: Kenya: Laikipia County

ncbi_isolation_source: fecal sample

ncbi_submitter: Institute of Primate Research


ncbi_country: Ethiopia: Oromia; East Shewa

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: uncultured Porphyromonas sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: fecal sample from a healthy donor for a colon model experiment; starting time

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: China: Hangzhou

ncbi_submitter: China Agriculture University


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cf125

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Laboratory

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Paenarthrobacter nicotinovorans

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Pseudomonadales bacterium


ncbi_assembly_name: freshwater MAG --- D14_bin-1459

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Methylococcaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_isolation_source: marine water

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nagoya University


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: USA: California

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Maryland, College Park


ncbi_organism_name: Proteus sp. G4441

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Morganellaceae;g__Proteus;x__unclassified Proteus (in: enterobacteria);s__Proteus sp. G4441


ncbi_country: USA: Boston

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Brigham & Women's Hospital


ncbi_country: USA: New York

ncbi_submitter: University of Chicago


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: Netherlands

ncbi_isolation_source: respiratory tract

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: RIVM


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_country: United Kingdom:Papworth

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus


ncbi_country: USA: GA

ncbi_isolation_source: stream

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. diarizonae;x__Salmonella enterica subsp. diarizonae serovar 60:r:e,n,x,z15


ncbi_isolation_source: marine

ncbi_organism_name: Altererythrobacter rubellus

ncbi_submitter: South China Sea Institute of Oceanology


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang university


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_isolation_source: plant (decomposed)

ncbi_organism_name: Leuconostoc falkenbergense

ncbi_strain_identifiers: CIRM-BIA 1261

ncbi_submitter: Brigham Young University


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Afipia sp. NBIMC_P1-C2

ncbi_submitter: FDA


ncbi_organism_name: Staphylococcus xylosus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_assembly_name: SPADES assembly of Enterobacter cloacae ND18

ncbi_isolation_source: tissues

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: uncultured Lachnospira sp.


ncbi_country: Russia

ncbi_isolation_source: not known


ncbi_country: China

ncbi_isolation_source: Hospital surface

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMBL-EBI


ncbi_organism_name: Bacillus mojavensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus mojavensis subgroup;s__Bacillus mojavensis


ncbi_organism_name: Abditibacteriaceae bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Vulcanimicrobiota bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Artificial municipal wastewater

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Peking University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: marine metagenome

ncbi_submitter: EMG


ncbi_submitter: DS-I Africa


ncbi_organism_name: Rhizobium sp. Nf11,1

ncbi_submitter: Institute of Bioresources and Sustainable Development (IBSD), Takyelpat, Imphal


ncbi_organism_name: uncultured Sulfurovum sp.


ncbi_organism_name: Dongia sp.

ncbi_submitter: Xiamen University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: DTU


ncbi_organism_name: uncultured Aquificales bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Chersky

ncbi_isolation_source: permafrost soil

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: KOREA POLAR RESEARCH INSTITUTE


ncbi_assembly_name: freshwater MAG --- MJ-time_bin-1391

ncbi_isolation_source: lake water

ncbi_organism_name: Oligoflexia bacterium

ncbi_submitter: BILS