ncbi_isolation_source: stool

ncbi_organism_name: Clostridium paraputrificum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Complete Genome

ncbi_genome_representation: full

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Norwegian Veterinary Institute


ncbi_assembly_level: Contig

ncbi_organism_name: Citrobacter portucalensis

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


gtdb_representative: t

ncbi_genome_category: derived from metagenome

ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_level: Scaffold

ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Litoreibacter sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: Colorado State University


ncbi_organism_name: Sediminibacterium sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: WA

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus cereus group sp. BC4

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BC4


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Plasticicumulans sp.

ncbi_submitter: Xiamen University


ncbi_organism_name: Streptomyces sp. WAC8370

ncbi_submitter: McMaster University


ncbi_organism_name: Turneriella sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Abuja


ncbi_isolate: AMB R1.32

ncbi_organism_name: Thermacetogeniaceae bacterium

ncbi_strain_identifiers: AMB R1.32

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_organism_name: Oliverpabstia intestinalis

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Dehalococcoidia bacterium


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: University of Iowa


ncbi_organism_name: Thermodesulfobacteriota bacterium


ncbi_organism_name: Syntrophales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China: Tibet

ncbi_organism_name: Yersinia pestis

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_country: China:wheat rhizosphere soil;Nanjing

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: Nanjing Agricultural College


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Seattle

ncbi_isolation_source: vagina

ncbi_organism_name: Gardnerella sp. KA00735

ncbi_submitter: University of Washington


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: University of Bern


ncbi_country: Switzerland

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli


ncbi_country: USA: Georgia

ncbi_isolation_source: week A4 calf 85 isolate 1

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: Food Animal Health and Mangement Program, University of Georgia


ncbi_country: Sweden: Malm

ncbi_isolation_source: Coarse-grained compost provided by the Sysav waste management company

ncbi_organism_name: Achromobacter spanius

ncbi_submitter: Lund University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Facklamia sp. P9177

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Bifidobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bradyrhizobium sp. SZCCHNR3054

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Texas; Dallas

ncbi_isolation_source: fecal sample

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Texas at Dallas


gtdb_type_species_of_genus: t

ncbi_organism_name: Antricoccus suffuscus

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Gynuella sunshinyii YC6258

ncbi_submitter: Gyeongsang National University


ncbi_country: China: Weishan; Yunnan Province

ncbi_organism_name: Streptomyces sp. CB02115

ncbi_submitter: The Scripps Research Institute


ncbi_country: China: guangxi

ncbi_isolation_source: pickle

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Shanghai Ocean University


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Microbacterium sp. 1.5R

ncbi_submitter: BGI


ncbi_country: Brazil

ncbi_isolation_source: Chicken meat

ncbi_submitter: University of Sao Paulo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: France: Besancon

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University Hospital of Besancon


ncbi_assembly_name: freshwater MAG --- Day6-5_bin-536

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lausanne University Hospital


ncbi_country: USA

ncbi_isolation_source: sputum

ncbi_submitter: University of Michigan


ncbi_country: USA: California; Lake County

ncbi_isolation_source: sediments of a seasonal vernal pool

ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Anaerostipes amylophilus

ncbi_submitter: UniKlinik RWTH Aachen


ncbi_country: Canada: Lacombe

ncbi_organism_name: Blautia sp.

ncbi_submitter: AAFC


ncbi_country: USA: Boston; MA

ncbi_organism_name: Clostridium sp. HMb25

ncbi_submitter: Harvard Medical School


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Taiwan

ncbi_isolation_source: bloodstream

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: University of Southern California


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_strain_identifiers: LVS

ncbi_submitter: LLNL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Thiotrichales;f__Francisellaceae;g__Francisella;s__Francisella tularensis;sb__Francisella tularensis subsp. holarctica;x__Francisella tularensis subsp. holarctica LVS


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Anaplasmataceae;x__Wolbachieae;g__Wolbachia;x__unclassified Wolbachia;s__Wolbachia endosymbiont (group B) of Eupeodes latifasciatus


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: Australia

ncbi_isolation_source: supragingival plaque isolated from 88 juvenile twins

ncbi_organism_name: Actinomyces sp.

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Sphingomonas azotifigens NBRC 15497

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: Tang lab


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: EMG


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: China Agricultural University


ncbi_country: China

ncbi_isolation_source: sediment

ncbi_organism_name: Sneathiella chungangensis

ncbi_submitter: Third Institute of Oceanography


ncbi_country: USA: Redwood City; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Butyricicoccus sp. OF13-6

ncbi_submitter: BGI


ncbi_isolation_source: ocean water

ncbi_organism_name: Prochlorococcus sp. MIT 1303

ncbi_submitter: MIT


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: University of Waterloo


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eggerthellaceae bacterium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_assembly_name: freshwater MAG --- MJ120702A_bin-759

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Max Planck Institute of Biochemistry


ncbi_country: Tanzania

ncbi_organism_name: Escherichia coli

ncbi_submitter: washington state university


ncbi_country: China: rainy forest in Xishuangbanna

ncbi_isolation_source: lichen

ncbi_organism_name: Streptomyces sp. YIM 130001

ncbi_submitter: Bielefeld University


ncbi_organism_name: Corynebacterium variabile


ncbi_assembly_level: Chromosome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Milan


ncbi_organism_name: Streptomyces sp. NPDC042638

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Colombia: Antioquia; Medellin

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Antioquia


ncbi_country: USA: San Francisco Bay

ncbi_isolation_source: Perchlorate-reducing enrichment

ncbi_organism_name: Sedimenticola thiotaurini


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Zhejiang

ncbi_isolation_source: stool

ncbi_submitter: Southwest Medical University


ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EMG


ncbi_country: China: Huizhou

ncbi_isolation_source: nose swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_submitter: Ningbo Medical Center Li Huili Hospital


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Hong Kong: Mongkok

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: The Independent Schools Foundation Academy


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Pirellula sp.

ncbi_submitter: University of Duisburg Essen


ncbi_isolation_source: faecal

ncbi_submitter: SC


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Novosphingobium sp.

ncbi_submitter: University of Michigan


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_country: China: Shandong; Jinan

ncbi_isolation_source: sputum

ncbi_submitter: Shandong university


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenster


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Albidovulum sp.

ncbi_submitter: Portland State University


ncbi_country: Germany

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae


ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Sphingobacteriaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Streptomyces erythrochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Capnocytophaga granulosa

ncbi_submitter: EMG


ncbi_organism_name: Mycobacterium neumannii

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Streptomyces rochei


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Shanghai

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Streptomyces anulatus


ncbi_organism_name: Methylobacter sp. sgz302048

ncbi_submitter: Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation


ncbi_organism_name: Streptomyces tendae


ncbi_country: Spain: Amadorio reservoir; Alicante

ncbi_isolation_source: freshwater reservoir from 10 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_assembly_name: Rumen uncultured genome RUG13753

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Roseiarcus sp.

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EBI


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Yersinia mollaretii

ncbi_submitter: Nanjing Agriculture University


ncbi_organism_name: Limosilactobacillus ingluviei


ncbi_country: China: Guizhou; Zhijin


ncbi_country: USA: Chicago

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Bulgaria: Sofia

ncbi_isolation_source: bacterial culture

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Center of Infectious and Parasitic Diseases, Sofia Bulgaria


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-148

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Phenylobacterium sp.

ncbi_strain_identifiers: new MAG-148

ncbi_submitter: Micoorganism


ncbi_organism_name: Actinotalea sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Opitutales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: granular activated carbon biofilter from drinking water treatment plant (DWTP)

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Northeastern University


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: East China Normal University


ncbi_country: USA: California; Pasadena; JPL; Building 179

ncbi_isolation_source: cleanroom floor

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_isolation_source: laboratory

ncbi_organism_name: Escherichia coli

ncbi_submitter: zhejiang University


ncbi_country: Australia: Melbourne

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Monash University


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: Milk powder plant

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: University of Zurich


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Montevideo


ncbi_country: Canada: Station Biologique des Laurentides (QC)

ncbi_isolation_source: tree leaf surface

ncbi_organism_name: Methylobacterium sp. E-066

ncbi_submitter: Universite du Quebec a Montreal


ncbi_organism_name: Marinomonas sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Bryobacteraceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: USA: California; Conness Lakes

ncbi_isolation_source: Alpine seep

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of 'Nebria riversi'


ncbi_country: Atlantic Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-355-P11

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Arctic Ocean: Southern Knipovich Ridge

ncbi_isolation_source: marine sediment core GS10_PC15; 223 cmbsf

ncbi_organism_name: Chlamydiota bacterium

ncbi_submitter: Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;x__unclassified Chlamydiota;s__Chlamydiota bacterium


ncbi_country: USA

ncbi_isolation_source: dermatitis

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Washington State University


ncbi_country: United Kingdom

ncbi_isolation_source: lung

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Oxford


ncbi_country: Germany

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Robert Koch Institute


ncbi_organism_name: Hungateiclostridiaceae bacterium KB18

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Oral

ncbi_organism_name: Micrococcus aloeverae

ncbi_submitter: King's College London


ncbi_country: China: Yancheng City; Jiangsu Province

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: SCAU


ncbi_country: Senegal: Deali

ncbi_isolation_source: Groundnut Field

ncbi_organism_name: Bradyrhizobium sp. ISRA430

ncbi_submitter: IRD


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: Czech Republic: Praha

ncbi_isolation_source: Tracheal secretion

ncbi_organism_name: Acinetobacter baumannii NIPH 190

ncbi_strain_identifiers: NIPH 190

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Moraxellales;f__Moraxellaceae;g__Acinetobacter;x__Acinetobacter calcoaceticus/baumannii complex;s__Acinetobacter baumannii;x__Acinetobacter baumannii NIPH 190


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Iran

ncbi_organism_name: Rathayibacter iranicus

ncbi_submitter: Oregon State University


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bilophila sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: University of Florida


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Lactobacillus gallinarum


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-190


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: gut content

ncbi_organism_name: Veillonella intestinalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA: Nebraska

ncbi_isolation_source: Lung and small intestine

ncbi_submitter: University of Nebraska-Lincoln

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_country: Thailand

ncbi_organism_name: Burkholderia pseudomallei 576

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Beijing

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia cyriacigeorgica

ncbi_submitter: Chinese PLA Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Facultad de Quimica


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Enterococcus faecalis EnGen0297

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: uncultured Porphyromonadaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Boston; MA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus M0292


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: NNAb 2476

ncbi_submitter: NNIIEM name acad.I.N. Blokhina


ncbi_country: New Zealand

ncbi_isolation_source: meat

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: SC


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Leclercia adecarboxylata


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: Antarctica: Prydz Bay

ncbi_isolation_source: sea ice

ncbi_organism_name: Pseudoalteromonas prydzensis ACAM 620

ncbi_strain_identifiers: ACAM 620

ncbi_submitter: Shandong University


ncbi_organism_name: Vibrio cholerae MAK 757

ncbi_strain_identifiers: MAK 757

ncbi_submitter: TIGR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae MAK 757


ncbi_organism_name: Ligilactobacillus murinus


ncbi_country: China: Malan

ncbi_organism_name: Rufibacter sp. LB8

ncbi_submitter: BGI-Qingdao


ncbi_submitter: Sichuan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: marine metagenome

ncbi_organism_name: Pseudohongiella nitratireducens

ncbi_submitter: EMG


ncbi_country: Australia: Port Phillip Bay

ncbi_isolation_source: Surface seawater

ncbi_organism_name: Planktomarina temperata

ncbi_submitter: Monash University


ncbi_organism_name: Akkermansia muciniphila


ncbi_country: Finland

ncbi_organism_name: Streptococcus halichoeri

ncbi_submitter: Helsinki University


ncbi_organism_name: Geobacillus thermoleovorans

ncbi_strain_identifiers: thermoleovorans

ncbi_submitter: Faculty of Pharmacy, Belgrade University


ncbi_organism_name: Ligilactobacillus salivarius

ncbi_submitter: Porcinotec Co., Ltd


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.


ncbi_country: USA

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_country: China: Shanghai

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Monash Unversity


ncbi_isolation_source: root

ncbi_organism_name: Rhizobium oryziradicis

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: Eastern Shore of Virginia

ncbi_isolation_source: yellow bacterial colony isolated from a diseased tomato plant in a tomato field

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Virginia Tech


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: United Kingdom: Scotland; Edinburgh

ncbi_organism_name: Escherichia coli

ncbi_submitter: The Roslin Institute


ncbi_organism_name: Streptococcus infantis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Acinetobacter baumannii 98826

ncbi_submitter: Institute for Genome Sciences


ncbi_country: India: Rajasthan; Alwar

ncbi_isolation_source: Marble rocks of palaeoproterozoic metasediments of the Aravali Supergroup

ncbi_organism_name: Serratia sp. ISTD04

ncbi_submitter: National Institute of Plant Genome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. ISTD04


ncbi_organism_name: Oxalobacteraceae bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: freshwater MAG --- AM-2014-D4_bin-427

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Legionella pneumophila 130b

ncbi_submitter: northwestern university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella;s__Legionella pneumophila;x__Legionella pneumophila serogroup 1;x__Legionella pneumophila 130b


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Brevundimonas pondensis

ncbi_submitter: University of Technology Sydney


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA4275

ncbi_submitter: University of Queensland


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Halanaerobium sp.

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Enterococcus sp. AZ173

ncbi_submitter: Broad Institute


ncbi_organism_name: Sphingobacterium sp. HSC-15S19

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Nocardia sp. CA-145437

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: The University of Adelaide


ncbi_organism_name: Shewanella chilikensis

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Cellvibrio sp.

ncbi_submitter: EMG


ncbi_organism_name: Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Melioribacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Yongping Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Hawaii

ncbi_organism_name: Xanthomonas nasturtii

ncbi_strain_identifiers: WHRI 8984

ncbi_submitter: University of Exeter


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Solirubrobacterales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: Instituto Superior Tecnico


ncbi_country: Canada: Edmonton

ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: [Eubacterium] saphenum

ncbi_submitter: University of Alberta


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Iowa Hospitals and Clinics


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Staphylococcus equorum

ncbi_strain_identifiers: Sil NS 9

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: Florida Keys; Sand Key

ncbi_isolation_source: marine

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Bhargavaea ginsengi

ncbi_submitter: Jet Propulsion Laboratory


ncbi_country: India

ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Enterobacter bugandensis

ncbi_strain_identifiers: IIT-BT 08

ncbi_submitter: JGI


ncbi_isolation_source: stool

ncbi_organism_name: Flavonifractor plautii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Mycobacteriales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_country: China: Shandong

ncbi_isolation_source: blood

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: China: HeNan

ncbi_isolation_source: bronchoalveolar lavage fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Arsenophonus sp. NC-PG7-MAG3

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Candidatus Avelusimicrobium stercoris

ncbi_submitter: University of Queensland


ncbi_submitter: 3201 hospital, Hanzhong


ncbi_country: Denmark: Ribe

ncbi_isolation_source: activated sludge from Ribe_18-Q3-R11-54

ncbi_organism_name: Nannocystis sp.

ncbi_submitter: Aalborg University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: Sweet Potato Sour Liquid

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: Jinzhou Medical University


ncbi_country: Japan:Kanagawa; Kawasaki

ncbi_isolation_source: Moist soil at an urban area

ncbi_organism_name: Cellulomonas oligotrophica

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_organism_name: Nocardia sp. NBC_00508

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3317

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France: Aquitaine

ncbi_isolation_source: Laying hen

ncbi_organism_name: Mycoplasmopsis pullorum

ncbi_submitter: Anses


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Key laboratory of dairy biotechnology and engineering


ncbi_country: Portugal: Ria de Aveiro; Aveiro

ncbi_organism_name: Salinicola endophyticus

ncbi_submitter: Universidade de Aveiro


ncbi_organism_name: Acinetobacter schindleri


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Lactococcus petauri

ncbi_submitter: USDA ARS


ncbi_country: Denmark: Aarhus; Maarslet

ncbi_isolation_source: nephridia

ncbi_organism_name: Verminephrobacter aporrectodeae subsp. tuberculatae

ncbi_submitter: Aarhus University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: LNCC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: China:Ningxia Hui Autonomous Region

ncbi_isolation_source: deserts sand

ncbi_organism_name: Goekera deserti

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Thailand: Udon Thani

ncbi_submitter: Thailand-Japan Research Collaboration Center on Emerging and Re-emerging infections, Research Institute for Microbial Diseases, Osaka University


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Agriculture and Agri-Food Canada/Agriculture et Agroalimentaire Canada


ncbi_isolation_source: feces day 14 after weanning

ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: University of Alberta


ncbi_submitter: China Agricultural University


ncbi_country: USA: Tift Co. GA

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: Not known


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: Bangladesh

ncbi_isolation_source: water sample

ncbi_organism_name: Vibrio cholerae O1 str. EDC-020

ncbi_submitter: Institute for Genome Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 str. EDC-020


ncbi_country: French Guiana: Petit Saut

ncbi_isolation_source: termite gut

ncbi_organism_name: Chitinispirillales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Oregon Coast

ncbi_isolation_source: 10 m water depth from station NH15

ncbi_organism_name: marine gamma proteobacterium HTCC2148

ncbi_submitter: Gordon and Betty Moore Foundation Marine Microbiology Initiative


ncbi_isolation_source: cold seep

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Costa Rica

ncbi_organism_name: Hugenholtzia roseola DSM 9546

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Bernardetiaceae;g__Hugenholtzia;s__Hugenholtzia roseola;x__Hugenholtzia roseola DSM 9546


ncbi_isolate: SPRUCE 430

ncbi_organism_name: Bacteroidota bacterium

ncbi_strain_identifiers: SPRUCE 430

ncbi_submitter: Georgia Institute of Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Kitasatospora sp. NPDC058032

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: freshwater MAG --- Umea1p3_bin-583

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_assembly_name: freshwater MAG --- AM1_bin-0228

ncbi_organism_name: uncultured beta proteobacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hangzhou Medical College


ncbi_country: Denmark: Avedore

ncbi_isolation_source: activated sludge from Aved_18-Q3-R54-62

ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Aalborg University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_assembly_name: IMG-taxon 2654588121 annotated assembly

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: City University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: Acetomicrobium sp.

ncbi_submitter: Swedish University of Agricultural Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea:Gangwon-do

ncbi_isolation_source: coal mine soil

ncbi_organism_name: Pseudarthrobacter sp. NIBRBAC000502772

ncbi_submitter: Genetic Resources Bank


ncbi_country: USA: Michigan

ncbi_organism_name: Pseudomonas sp. AU12215

ncbi_submitter: The University of Michigan


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_submitter: Stanford University School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_isolation_source: rat gut

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: University of Queensland


ncbi_country: Norway

ncbi_isolation_source: Human faeces

ncbi_submitter: NTNU


ncbi_country: Canada: Alberta

ncbi_isolation_source: Culture Media

ncbi_submitter: University of Alberta


ncbi_isolation_source: metagenome

ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Chung Hsing University


ncbi_country: India: Chattisgarh

ncbi_isolation_source: rhizospheric soil

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Zytex Biotech Pvt. Ltd.


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Roseibacillus sp.


ncbi_country: Colombia

ncbi_isolation_source: stool

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Sphingobium sp. LMC3-1-1.1

ncbi_submitter: Interfaculty Research Collaboration “One Health” of the University of Bern


ncbi_isolation_source: Lobaria metagenome

ncbi_organism_name: Sphingomonadaceae bacterium

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Linnaeus University


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Surrey


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Central Texas Vetrans Healthcare system


ncbi_submitter: Lanzhou Institute of Husbandry and Pharmaceutical Sciences of CAAS


ncbi_organism_name: uncultured Hyphobacterium sp.

ncbi_submitter: EMG


ncbi_submitter: dtu national food institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Minnesota


ncbi_organism_name: uncultured Terrimonas sp.


ncbi_organism_name: uncultured Rickettsiales bacterium


ncbi_organism_name: Bradyrhizobium tunisiense

ncbi_submitter: EMBM Laboratory, Faculty of Sciences, Mohammed V University in Rabat


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Acidobacteriota bacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_submitter: The University Hong Kong


ncbi_isolate: SZAS LIN-90

ncbi_strain_identifiers: SZAS LIN-90


ncbi_isolation_source: not available

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WTSI


ncbi_organism_name: Candidatus Moraniibacteriota bacterium

ncbi_submitter: CLUE-TERRA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moraniibacteriota bacterium


ncbi_organism_name: uncultured Alcanivoracaceae bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: Lund University


ncbi_submitter: Universidad Nacional Mayor de San Marcos


ncbi_country: China: Dexing Copper Mine; Jiangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_country: Thailand: Trang

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Brucella pseudintermedia

ncbi_submitter: University of Technology Sydney


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 391

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli

ncbi_submitter: Animal and Plant Health Agency


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_isolation_source: porpoise

ncbi_organism_name: Erysipelothrix rhusiopathiae

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_organism_name: Marinobacter sp.

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_country: India: Patancheru; Hyderabad

ncbi_isolation_source: nodule

ncbi_organism_name: Ensifer sp. IC3342

ncbi_submitter: university of Oxford


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: Japan:Shiga; Lake Biwa

ncbi_isolation_source: Lake freshwater

ncbi_organism_name: Methylococcaceae bacterium

ncbi_submitter: Center for Ecological Research, Kyoto University


ncbi_isolation_source: soil

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: Argentina: Salar del Hombre Muerto

ncbi_isolation_source: hypersaline; lithium-rich; high-altitude salt flat

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: New England Biolabs


ncbi_country: South Korea: Gwangju

ncbi_isolation_source: Subgingival dental plaque

ncbi_organism_name: Lachnoanaerobaculum gingivalis

ncbi_strain_identifiers: KCOM 2030

ncbi_submitter: Korean Collection for Oral Microbiology


ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila


ncbi_country: Finland: Lake Rauanjarvi

ncbi_isolation_source: freshwater

ncbi_organism_name: Polynucleobacter sp. UB-Raua-W9

ncbi_submitter: University of Innsbruck


ncbi_country: Brazil: Braganca

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_isolation_source: gut content

ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: Denmark: Fredericia

ncbi_isolation_source: activated sludge from Fred_18-Q3-R57-64

ncbi_organism_name: Candidatus Skiveiella danica

ncbi_submitter: Aalborg University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: University of Chicago


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;c__Candidatus Marinamargulisbacteria;x__unclassified Candidatus Marinamargulisbacteria;s__Candidatus Marinamargulisbacteria bacterium


ncbi_country: China: JiangSu

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_organism_name: Kocuria sp.


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_isolation_source: fastidious anaerobic agar

ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: Human

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: SC


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_organism_name: Klebsiella michiganensis


ncbi_country: USA: OK

ncbi_organism_name: Listeria innocua

ncbi_submitter: Cornell University


ncbi_country: USA: Maryland

ncbi_isolation_source: peri-anal swab

ncbi_organism_name: Klebsiella pneumoniae 4006

ncbi_submitter: Institute for Genome Sciences


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: Taiwan: Kaohsiung Veterans General Hospital; Kaohsiung

ncbi_isolate: human

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: National Kaohsiung Normal University


ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Spechtiibacteriota;s__Candidatus Spechtbacteria bacterium RIFCSPHIGHO2_02_FULL_43_15b


ncbi_organism_name: Escherichia coli

ncbi_submitter: Bhagwan Mahavir University


ncbi_assembly_name: Rumen uncultured genome RUG12584

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA:Columbia River; Washington; USA

ncbi_isolation_source: river sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Burkholderia anthina

ncbi_submitter: Northern Arizona University


ncbi_country: Lebanon

ncbi_isolation_source: soil

ncbi_organism_name: Alcaligenes sp. RS4

ncbi_submitter: Lebanese American University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Gemmatimonadales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Lake Mendota; Madison; WI

ncbi_isolation_source: lake water

ncbi_organism_name: Candidatus Melainabacteria bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__unclassified Candidatus Melainabacteria;s__Candidatus Melainabacteria bacterium


ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Five Islands Nature Reserve; NSW

ncbi_isolation_source: cloacal sample

ncbi_submitter: OUTBREAK


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: sulfate reducing culture inoculated from produce water at a well-head in an active oil and gas field

ncbi_organism_name: Oleidesulfovibrio alaskensis

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Coprobacillus sp. AF37-2

ncbi_submitter: BGI


ncbi_country: Australia: Middle Park Beach; Port Phillip Bay site B

ncbi_isolation_source: Beach sand

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Monash University


ncbi_country: Belgium

ncbi_organism_name: Actinobacillus equuli subsp. equuli

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: stool

ncbi_organism_name: Parabacteroides provencensis

ncbi_submitter: URMITE


ncbi_country: USA: IL

ncbi_isolation_source: Corn Flour

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Streptomycetaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Martelella radicis

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: freshwater MAG --- AM_bin-2963

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;o__Limisphaerales;x__environmental samples;s__uncultured Verrucomicrobia subdivision 3 bacterium


ncbi_country: USA: Minnesota:Rochester

ncbi_isolation_source: feces of 51 yr old caucasian female with stage I colorectal cancer

ncbi_organism_name: Butyricicoccus sp. K4410.MGS-46

ncbi_submitter: Mayo Clinic


ncbi_organism_name: Dialister invisus


ncbi_isolate: AOP25_F2_surf _bin _3

ncbi_organism_name: Brachybacterium tyrofermentans

ncbi_strain_identifiers: AOP25_F2_surf _bin _3

ncbi_submitter: Genoscope


ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Guyparkeria sp. TX1

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__environmental samples;s__uncultured Candidatus Cloacimonadota bacterium


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Lysinibacillus sp. RS10

ncbi_submitter: Athabasca University


ncbi_organism_name: uncultured Advenella sp.


ncbi_organism_name: uncultured Desulfobacteraceae bacterium


ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Bicetre hospital


ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: University of Florida


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Bacillus cereus group sp. BceL176

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL176


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Pacific Ocean: Mariana Trench

ncbi_isolation_source: Mariana trench surficial sediment

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Deep Sea Science and Engineering, Chines Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Bath


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: BGI


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Christensenella sp.


ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Entomoplasmatales;f__Spiroplasmataceae;g__Spiroplasma;x__unclassified Spiroplasma;s__Spiroplasma endosymbiont of Villa modesta


ncbi_organism_name: Terriglobia bacterium


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillus sp.


ncbi_organism_name: Prevotella sp. CAG:732

ncbi_submitter: DTU


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Parabacteroides sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Butyricimonas sp. An62

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Switzerland: Bern

ncbi_organism_name: Bifidobacterium animalis subsp. animalis

ncbi_submitter: University of Bern


ncbi_assembly_name: Rumen uncultured genome RUG12642

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: pistachio

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: USA

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Massachusetts General Hospital


ncbi_isolation_source: ear

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: The University of Tennessee


ncbi_country: Russia: Moscow

ncbi_isolation_source: catheter

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Germany

ncbi_organism_name: Acinetobacter indicus

ncbi_submitter: Robert Koch Institute


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: LNCC


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Weissella viridescens

ncbi_submitter: University of Chicago


ncbi_country: South Korea: Seoul

ncbi_organism_name: Bacteroides finegoldii

ncbi_submitter: Yonsei University


ncbi_country: Italy

ncbi_isolation_source: environmental swab sponge dairy facility blue cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: lab

ncbi_submitter: Robert Koch-Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Gaiellaceae bacterium

ncbi_submitter: University of California Berkeley


ncbi_country: China: Sichuan

ncbi_isolation_source: pond

ncbi_organism_name: Aeromonas veronii

ncbi_submitter: Research Center of Fish Disease


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. WAC05858

ncbi_submitter: McMaster University


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_isolation_source: human gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: France: Fontainebleau

ncbi_isolation_source: feces from endurance ride Fontainebleau

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: INRA


ncbi_country: China: Poyang Lake; Jiangxi province

ncbi_isolation_source: Carex cinerascens

ncbi_organism_name: Neobacillus sp. 114

ncbi_submitter: Northeast Institute of geography and Agroecology, Chinese Academy of Sciences


ncbi_country: Thailand: Phitsanulok

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_organism_name: Rhizobium ruizarguesonis

ncbi_submitter: Aarhus University


ncbi_organism_name: Coriobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Kingella kingae

ncbi_strain_identifiers: IDOBlood

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: L3 Larvae

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Vanderbilt University


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Acetobacterium sp. K1/6

ncbi_submitter: IBPM RAS


ncbi_country: Colombia: Pasto

ncbi_isolation_source: urine

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Universidad El Bosque


ncbi_country: Egypt: Alexandria

ncbi_isolation_source: aspirate

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: LBMM 6390

ncbi_submitter: University of the Basque Country


ncbi_assembly_name: freshwater MAG --- KR_bin-3349

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Acetobacteraceae bacterium

ncbi_submitter: BILS


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: Canada: British Columbia; Fraser Valley

ncbi_isolation_source: fecal material

ncbi_submitter: McGill University and Genome Quebec Innovation Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_country: USA

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: Icahn School of Medicine


ncbi_organism_name: Segatella copri

ncbi_submitter: New York University


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: CDC


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Alloalcanivorax venustensis

ncbi_submitter: Xiamen University


ncbi_assembly_name: IMG-taxon 2639762526 annotated assembly

ncbi_organism_name: Leifsonia sp. CL147

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: BACD

ncbi_organism_name: Bacteroides rodentium

ncbi_submitter: Biotechnology and Biomedicine Centre of the Academy of Science and Charles University


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: Colorado State University


ncbi_country: China: Huizhou

ncbi_isolation_source: wound

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: USA: NM; Las Cruces

ncbi_isolation_source: Adult mosquito gut

ncbi_organism_name: Acinetobacter sp. Ag2

ncbi_submitter: New Mexico State University


ncbi_country: United Kingdom

ncbi_isolation_source: chlorinated drinking water; site 3

ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: University of Glasgow


ncbi_organism_name: Dickeya zeae

ncbi_submitter: University of Hawaii


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: Chondroid

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: South Korea: Jinju

ncbi_isolation_source: vaginal swab

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: Germany

ncbi_organism_name: Mycobacterium avium subsp. hominissuis

ncbi_submitter: Robert Koch Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. hominissuis


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: University of Duisburg Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_country: Ghana

ncbi_isolation_source: Soft tissue biopsy

ncbi_organism_name: Alcaligenes faecalis

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_country: USA: PA

ncbi_isolation_source: pig liver

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Guangzhou Institute of Respiratory Health, First Affiliated Hospital of Guangzhou Medical University


ncbi_country: Mexico: CDMX

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: INSTITUTO MEXICANO DEL SEGURO SOCIAL


ncbi_country: France

ncbi_isolation_source: Hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Switzerland

ncbi_organism_name: Campylobacter coli H6

ncbi_submitter: Cornell University


ncbi_country: USA: Guaymas Basin

ncbi_isolation_source: Guaymas Basin Hydrothermal plume metagenome

ncbi_organism_name: Porticoccaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_assembly_name: Rumen uncultured genome RUG14843

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_assembly_name: freshwater MAG --- LaPlata-b_bin-0686

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle

ncbi_isolation_source: Wound Left Shoulder non operative pre incision

ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: University of Washington


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Geneva University Hospitals


ncbi_country: Mexico

ncbi_isolation_source: blood

ncbi_submitter: University of Sao Paulo


ncbi_country: China: JiangSu

ncbi_submitter: Institute for Communicable Disease Control and Prevention,Chinese Center for Disease Control and Pr


ncbi_organism_name: Roseburia intestinalis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_assembly_name: Salmonella enterica CVM N47713 v1.0

ncbi_country: USA: GA

ncbi_isolation_source: Ground Turkey

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Saintpaul


ncbi_submitter: Zhejiang Provincial People's Hospital


ncbi_country: Ghana: Accra

ncbi_isolation_source: hospital

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Variovorax atrisoli

ncbi_submitter: Guangxi University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Leyella stercorea

ncbi_submitter: EMG


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Varibaculum sp.


ncbi_organism_name: uncultured Bacillota bacterium


ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Diagnostic and Monitoring of Animal pathogens


ncbi_organism_name: Neorhizobium sp. DT-125

ncbi_submitter: IMEDEA


ncbi_organism_name: uncultured Novosphingobium sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Hyphomicrobiaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella sp. NW1011

ncbi_submitter: Sichuan University


ncbi_organism_name: Brevibacillus agri

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Anaerovoracaceae bacterium

ncbi_submitter: Wilmar International Limited


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of Florida


ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolate: AOP1_E1_surf _bin _5

ncbi_organism_name: Psychrobacter celer

ncbi_strain_identifiers: AOP1_E1_surf _bin _5

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces microflavus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediments

ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_country: USA

ncbi_organism_name: Escherichia fergusonii

ncbi_submitter: CDC


ncbi_organism_name: Stenotrophomonas sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_assembly_name: freshwater MAG --- D14_bin-1168

ncbi_isolation_source: pond

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: University of Chicago


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of California at Davis


ncbi_country: Denmark: Jytland

ncbi_isolation_source: Rectum

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Aarhus University


ncbi_organism_name: Micromonospora chalcea


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Medicines Institute


ncbi_country: USA: Florida

ncbi_organism_name: Xanthomonas euvesicatoria pv. euvesicatoria

ncbi_submitter: Ottawa Research and Development Center


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Zambryskiibacteriota;s__Candidatus Zambryskibacteria bacterium CG10_big_fil_rev_8_21_14_0_10_42_12


ncbi_organism_name: Mesomycoplasma ovipneumoniae

ncbi_submitter: Kimberly Andrews


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: Anadarko; OK; Zodletone Spring

ncbi_isolation_source: Freshwater Sediment

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Sinorhizobium fredii

ncbi_strain_identifiers: USDA 193


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: NY

ncbi_isolation_source: Respiratory

ncbi_organism_name: Staphylococcus aureus DAR1956

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: soil

ncbi_organism_name: Aminobacter aminovorans

ncbi_strain_identifiers: KCTC 2477

ncbi_submitter: KCTC (Korean Collection for Type Cultures)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: China Medical University


ncbi_organism_name: Lachnospira sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Germany: Kiel

ncbi_isolation_source: food

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Max Rubner-Institut


ncbi_country: USA: International Space Station

ncbi_isolation_source: International Space Station during MT-2

ncbi_organism_name: Pseudomonas fulva

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: Klebsiella quasipneumoniae


ncbi_country: United Kingdom: Liverpool

ncbi_isolation_source: Sputum

ncbi_organism_name: Streptococcus oralis

ncbi_submitter: Xi'an Jiaotong-Liverpool University


ncbi_organism_name: Nioella sp.

ncbi_submitter: Tang lab


ncbi_organism_name: uncultured Paraprevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Lactobacillus iners LEAF 3008A-a

ncbi_strain_identifiers: LEAF 3008A-a

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: surface swab

ncbi_organism_name: Pseudomonas sp. GD04045

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: WRAIR-Africa


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Pelagibacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;g__Candidatus Pelagibacter;x__environmental samples;s__uncultured Candidatus Pelagibacter sp.


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: India

ncbi_isolation_source: eye

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of New South Wales


ncbi_country: Canada: British Columbia

ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Copenhagen


ncbi_country: South Korea: Seoul

ncbi_isolation_source: blood sample from a 55 year old woman who was hospitalized in ICU

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_country: Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli HVH 77 (4-2605759)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 77 (4-2605759)


ncbi_organism_name: Candidatus Kapaibacterium thiocyanatum

ncbi_submitter: Nanyang Technological University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__Candidatus Kapaibacterium thiocyanatum

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__Candidatus Kapaibacterium thiocyanatum


ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: China

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: University of Melbourne


ncbi_country: Spain: Catalunya

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute of Agrobiotechnology


ncbi_country: New Zealand: Manawatu

ncbi_isolation_source: canine uropathogenic isolate

ncbi_organism_name: Escherichia coli

ncbi_submitter: Massey University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Cellvibrionales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Bacillus cytotoxicus

ncbi_submitter: University of Padova


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Peru

ncbi_isolation_source: urine

ncbi_organism_name: Providencia stuartii

ncbi_submitter: UNIVERSIDAD PERUANA CAYETANO HEREDIA


ncbi_submitter: Dutch CPE surveillance Study Group


ncbi_organism_name: uncultured Porticoccaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: China: Dongying

ncbi_isolation_source: Shengli oilfield at Shandong province

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: East China University of Science and Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Mycoplasmataceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Norway: West coast; Beach

ncbi_isolation_source: Plastic

ncbi_organism_name: Aeromonas sp. 2HA2

ncbi_submitter: Institute of Marine research


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0080

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: fetus

ncbi_organism_name: Helicobacter trogontum

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: United Kingdom: Great Britain

ncbi_organism_name: Clostridium novyi B str. NCTC 9691

ncbi_strain_identifiers: NCTC 9691

ncbi_submitter: National Veterinary Institute (SVA)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium novyi;x__Clostridium novyi B;x__Clostridium novyi B str. NCTC 9691


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA:Florida; Big Torch Key

ncbi_organism_name: Micromonospora sp. WMMD975

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shenzhen University


ncbi_organism_name: Streptomyces sp. NBC_01750

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Haliangiales bacterium

ncbi_submitter: East China Normal University


ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Serbia

ncbi_isolation_source: tracheal aspirate

ncbi_submitter: Faculty of Medicine University of Belgrade


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Brucella gallinifaecis

ncbi_strain_identifiers: ISO 196

ncbi_submitter: Sichuan University


ncbi_organism_name: Agrobacterium radiobacter

ncbi_strain_identifiers: LMG 267

ncbi_submitter: Oregon State University


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Lu'an People's Hospital


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Prosthecobacter debontii


ncbi_isolate: SPRUCE 225

ncbi_organism_name: Streptosporangiaceae bacterium

ncbi_strain_identifiers: SPRUCE 225

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Institute of Biotechnology, Univerity of Helsinki


ncbi_isolation_source: symbiotic root nodules on Alhagi sparsifolia from desert of northwest China

ncbi_organism_name: Mesorhizobium alhagi CCNWXJ12-2

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Tepidanaerobacteraceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Erysipelotrichales bacterium


ncbi_organism_name: uncultured Acidobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Planctomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;x__environmental samples;s__uncultured Planctomycetota bacterium


ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: EPFL


ncbi_assembly_name: Rumen uncultured genome RUG655

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Japan: Nagano; Suwa

ncbi_isolation_source: feces

ncbi_submitter: Shinshu University Graduate School of Medicine


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: India: Sundarbans; Bonnie Camp

ncbi_isolation_source: soil sediment

ncbi_organism_name: Streptomyces sp. SMS_SU21

ncbi_submitter: University of Calcutta


ncbi_organism_name: Klebsiella sp. JB_Kp003

ncbi_submitter: Max Rubner-Institut


ncbi_organism_name: Xanthomonas campestris pv. vitiscarnosae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Makerere University


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_country: Canada: Scotian Shelf

ncbi_isolation_source: pooled samples from sponge host and sea water

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: SponGES


ncbi_assembly_name: Campylobacter coli CVM N23392 v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_organism_name: Campylobacter coli

ncbi_submitter: FDA


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Lebanon

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Lebanese American University


ncbi_country: China: Jiangsu

ncbi_isolation_source: urine

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: metagenome

ncbi_organism_name: Anaeromassilibacillus sp. An250


ncbi_country: New Zealand

ncbi_isolation_source: throat

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University of Melbourne


ncbi_country: Mexico: desert of Cuatro Cienegas; Coahuila

ncbi_isolation_source: sediment

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Cinvestav


ncbi_country: China: Jiangxi; Yinshan

ncbi_organism_name: Acidithiobacillus ferrooxidans

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Providencia rettgeri

ncbi_submitter: the seqafrica consortium


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas thiooxydans

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Stieleria sp.

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: USA: College Station; TX

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: USDA-ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang University


ncbi_organism_name: Nocardiopsis tropica

ncbi_submitter: CIIMAR - Interdisciplinary Centre of Marine and Environmental Research


ncbi_country: China: the Pearl River Estuary

ncbi_isolation_source: estuarine water [ENVO:01000301]

ncbi_organism_name: Pseudosulfitobacter pseudonitzschiae

ncbi_submitter: Shantou University


ncbi_country: Panama

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Mycobacterium tuberculosis PanR0404

ncbi_submitter: Texas A&M University


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: ATCC 35150 NalR

ncbi_submitter: Canadian Food Inspection Agency


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Japan: Okinawa; Aka-island; Beach Majanohama

ncbi_organism_name: Euzebya tangerina

ncbi_submitter: Shenzhen University


ncbi_country: France: Besse-et-Saint-Anastaise; Lac Pavin

ncbi_isolation_source: lake water column

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Herbaspirillum seropedicae

ncbi_submitter: Guangxi University


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: Blood


ncbi_country: China: Sichuan

ncbi_isolation_source: faecal swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sichuan University


ncbi_country: USA

ncbi_organism_name: Escherichia coli 96.0932

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bartonella sp. C271

ncbi_submitter: University of Salford


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Patiriisocius sp.

ncbi_submitter: University of East Anglia


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: South China Agricultural University


ncbi_country: Austria: Vorarlberg

ncbi_isolation_source: feces

ncbi_submitter: Austrian Agency for Health and Food Safety, Vienna, Austria


ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Helicobacter trogontum

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: termite gut

ncbi_organism_name: Lachnospiraceae bacterium UBA935

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Caecibacter sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The University of Wisconsin-Madison


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptococcus mitis


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Draconibacterium sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus 10290

ncbi_submitter: UTRECHT UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 10290


ncbi_country: USA: Boston

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: Brigham & Women's Hospital


ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Northeastern University


ncbi_country: Norway: Oslo

ncbi_isolation_source: Laboratory strain; originating from goat

ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Oslo University Hospital, Rikshopitalet


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter sp. UBA3407

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: 12-year-old female

ncbi_organism_name: Escherichia coli

ncbi_submitter: Shanghai Majorbio Bio-pharm Technology Co.,Ltd


ncbi_organism_name: uncultured Clostridium sp.


ncbi_country: Belgium

ncbi_organism_name: Aliarcobacter cryaerophilus

ncbi_submitter: Ghent University


ncbi_country: USA: Houston; TX

ncbi_isolation_source: vagina

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: Seattle University


ncbi_country: Spain: Alfacada pond; Ebro delta; Tarragona

ncbi_isolation_source: epidermal mucus of Anguilla anguilla fishes in Ebro delta

ncbi_organism_name: Hafnia paralvei

ncbi_submitter: University of Queensland


ncbi_country: USA: Dallas; TX

ncbi_isolation_source: Breast meat

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Broad Institute


ncbi_organism_name: Acinetobacter oleivorans

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: University of Chinese Academy of Sciences