ncbi_organism_name: uncultured Clostridium sp.


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_country: China

ncbi_genome_representation: full

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Shanghai Pulmonary Hospital, School of Medicine, Tongji University,Shanghai, China


ncbi_assembly_level: Contig

ncbi_country: USA: Washington DC

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: WRAIR


ncbi_organism_name: Streptococcus sp. 27098_8_51

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- MJ-2014-D6_bin-290

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_isolate: MEAT

ncbi_organism_name: Campylobacter jejuni

ncbi_strain_identifiers: MEAT;Campylobacter jejuni

ncbi_submitter: LSHTM


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Nocardia brasiliensis

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.2 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Roizmaniibacteriota;s__Candidatus Roizmanbacteria bacterium RIFOXYB2_FULL_38_10


ncbi_country: France

ncbi_isolation_source: fermented milk

ncbi_organism_name: Lactobacillus johnsonii

ncbi_strain_identifiers: CIRM-BIA 900

ncbi_submitter: Brigham Young University


ncbi_country: Brazil

ncbi_organism_name: Streptomyces brasiliscabiei

ncbi_refseq_category: reference genome

ncbi_submitter: UFSCar

ncbi_type_material_designation: assembly from type material


gtdb_representative: t

ncbi_country: Australia: Bendalong

ncbi_isolation_source: gill

ncbi_submitter: University of Vienna

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Chromatiales;f__Sedimenticolaceae;g__Candidatus Thiodiazotropha;s__Candidatus Thiodiazotropha sp. (ex Codakia rugifera)


ncbi_organism_name: Aerococcus urinae

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: BGI


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Brazil: Recife

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Karolinska Institutet


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_country: Cambodia

ncbi_organism_name: Mycobacterium mantenii

ncbi_submitter: JCVI


ncbi_organism_name: Pseudomonas sp. 3400

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: China: Fangchenggang City; Guangxi Province

ncbi_submitter: SCAU


ncbi_assembly_level: Complete Genome

ncbi_country: South Korea:Daegu

ncbi_isolation_source: Wound

ncbi_submitter: Korea Basic Science Institute


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: freshwater MAG --- AM4_bin-352

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Italy

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Federico II University


ncbi_isolation_source: human gut

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Corynebacteriaceae;x__unclassified Corynebacteriaceae;s__Corynebacteriaceae bacterium 'ARUP UnID 227'


ncbi_country: Russia: Moscow

ncbi_isolation_source: bronchoalveolar lavage

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Australia: Melbourne

ncbi_isolation_source: urine

ncbi_submitter: Monash University


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_organism_name: Ligilactobacillus agilis


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. bolletii

ncbi_submitter: SC


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Muribaculum intestinale


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-670-M15

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University, Nairobi


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Tehran


ncbi_organism_name: uncultured Chitinophagaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Shewanella mangrovisoli

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_organism_name: Candidatus Fimousia sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Fimousia;x__unclassified Candidatus Fimousia;s__Candidatus Fimousia sp.


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_organism_name: Variovorax sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Candidatus Scalindua sp.

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Scalinduaceae;g__Candidatus Scalindua;x__unclassified Candidatus Scalindua;s__Candidatus Scalindua sp.


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonas sp. NPDC098740

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: uncultured Enterococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Alberta

ncbi_organism_name: bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: China: Lake Taihu; Jiangsu

ncbi_isolation_source: Bloom Water

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: Duke Kunshan University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.

ncbi_submitter: EMG


ncbi_country: USA: Santa Barbara Zoo

ncbi_isolation_source: feces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridium sp.


ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: SD

ncbi_isolation_source: porcine ileum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: Spain: Madrid

ncbi_isolation_source: Antibiotic Resistance Surveillance Program

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Virgen Macarena


gtdb_type_species_of_genus: t

ncbi_country: Antarctica

ncbi_organism_name: Cryobacterium psychrophilum

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shandong

ncbi_isolation_source: cloaca swabs from commercial farm

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_submitter: University of Sao Paulo


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0097

ncbi_submitter: Broad Institute


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM100_BB17A

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Clostridiales bacterium


ncbi_organism_name: Bacillota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Ruminococcus sp.


ncbi_country: South Africa: Durban Chest Clinic

ncbi_organism_name: Mycobacterium tuberculosis TKK_03_0096


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Shandong University


ncbi_isolate: SPRUCE 579

ncbi_organism_name: Spirochaetia bacterium

ncbi_strain_identifiers: SPRUCE 579

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Taiwan: Taoyuan

ncbi_isolation_source: blood

ncbi_submitter: Zhejiang University School of Medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Goldcoast


ncbi_isolation_source: spleen

ncbi_organism_name: Aeromonas sobria

ncbi_submitter: University of Connecticut Graf Lab


ncbi_assembly_level: Chromosome

ncbi_organism_name: Cereibacter sphaeroides 2.4.1


ncbi_isolation_source: commercial dairy product

ncbi_submitter: Danone Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lacticaseibacillus;s__Lacticaseibacillus paracasei;sb__Lacticaseibacillus paracasei subsp. paracasei;x__Lacticaseibacillus paracasei subsp. paracasei Lpp7


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: China: Hunan

ncbi_isolation_source: dust

ncbi_organism_name: Acinetobacter sp. YH16032

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: BPUTEOMOX

ncbi_isolate: BPUTEOMOX

ncbi_isolation_source: gill tissue

ncbi_strain_identifiers: BPUTEOMOX

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__unclassified Gammaproteobacteria;s__methanotrophic endosymbiont of Bathymodiolus puteoserpentis (Logatchev)


ncbi_assembly_name: Rumen uncultured genome RUG12444

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: USA: Iowa

ncbi_organism_name: Streptococcus equi subsp. zooepidemicus

ncbi_submitter: iowa state university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. zooepidemicus


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: bioMerieux - La Balme-Les Grottes


ncbi_country: Saudi Arabia: Red Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Erythrobacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Belarus

ncbi_isolation_source: Excreted bodily substance

ncbi_organism_name: Mycobacterium tuberculosis XTB13-086

ncbi_submitter: Broad Institute


ncbi_submitter: Centre for Microbiome Research


ncbi_country: China

ncbi_isolation_source: Ambient sewage

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Japan

ncbi_submitter: Toho University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. steigerwaltii


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: EMG


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_organism_name: uncultured Staphylococcaceae bacterium


ncbi_organism_name: Crocosphaera sp.

ncbi_submitter: Montana State University


ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: United Kingdom

ncbi_isolation_source: Pharynx

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Orebro University Hospital


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Escherichia coli PA42

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_country: USA: Montana

ncbi_organism_name: Xanthomonas translucens pv. translucens

ncbi_submitter: The Connecticut Agricultural Experiment Station

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas translucens group;s__Xanthomonas translucens;x__Xanthomonas translucens pv. translucens


ncbi_isolation_source: Faeces


ncbi_country: Brazil

ncbi_submitter: LNCC


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_isolation_source: soil sample

ncbi_organism_name: Cytobacillus depressus

ncbi_submitter: The Third Institute of State Oceanic Administration


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: The University of Queensland


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: ANSES


ncbi_isolation_source: Clinical

ncbi_organism_name: Burkholderia gladioli

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_country: USA: Honolulu; HI

ncbi_isolation_source: accessory nidamental gland

ncbi_organism_name: Leisingera sp. ANG-S5

ncbi_submitter: University of Connecticut


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 415

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University of Washington


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Agriculture Faisalabad Pakistan


ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV060

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Streptomyces sp. NPDC007148

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Nanyang Technological University


ncbi_country: Viet Nam

ncbi_isolation_source: Slaughterhouse

ncbi_submitter: University of Antwerpen


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Netherlands

ncbi_isolation_source: river water

ncbi_organism_name: Enterococcus faecium EnGen0040

ncbi_submitter: Broad Institute


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Alcaligenaceae bacterium

ncbi_submitter: Universite Laval


ncbi_isolation_source: lake water

ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculum sp.


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Canada: Vancouver

ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: University of British Columbia


ncbi_country: Australia

ncbi_isolation_source: saliva

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: University of New South Wales


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Malaysia: Kuala Lumpur

ncbi_isolation_source: Gastric biopsies

ncbi_organism_name: Helicobacter pylori FD662

ncbi_submitter: University of Malaya-Malaysian Genomics Resource Centre Berhad-University of New South Wales


ncbi_country: USA

ncbi_isolation_source: Other

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: MSSA


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Oceanospirillaceae bacterium

ncbi_submitter: University of East Anglia


ncbi_country: China: Taizhou

ncbi_isolation_source: secretion

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Zhejiang University School of Medicine


ncbi_country: Sweden

ncbi_organism_name: Escherichia coli

ncbi_submitter: Max von Pettenkofer-Institute


ncbi_organism_name: Idiomarina piscisalsi

ncbi_strain_identifiers: TISTR 2054

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Luminiphilus sp.

ncbi_submitter: Tang lab


ncbi_organism_name: Eubacterium ventriosum

ncbi_submitter: Washington University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Italy

ncbi_isolation_source: oropharyngeal swab

ncbi_submitter: Istituto Zooprofilattico Sperimentale del Piemonte Liguria e Valle d'Aosta


ncbi_country: United Kingdom: University of Surrey

ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas azerbaijanoccidentalis

ncbi_strain_identifiers: SH

ncbi_submitter: Imperial College London


ncbi_organism_name: Escherichia coli 113303

ncbi_submitter: Washington University


ncbi_country: USA: New York

ncbi_isolation_source: human fecal sample

ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: University of Chicago


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Thioglobus sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__unclassified Candidatus Thioglobus;s__Candidatus Thioglobus sp.


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio lentus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Australia: NSW

ncbi_organism_name: Streptococcus iniae

ncbi_submitter: The University of Queensland


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vibrio fortis

ncbi_submitter: The University of Tokyo, Atmosphere and Ocean Research Institute


ncbi_organism_name: Segatella copri


ncbi_organism_name: Salmonella sp. SKLX094746

ncbi_submitter: Zhejiang university


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Bdellovibrionota bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces sp. NPDC048225

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Sphingobacterium siyangense

ncbi_submitter: Universite Paris Saclay


ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Braganca

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: Germany: Langen

ncbi_organism_name: Bacillus cereus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Solibacteraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: HRSE 17

ncbi_submitter: Chung-Ang University


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_country: United Kingdom: Cambridge

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: FusInv

ncbi_submitter: MRC Laboratory of Molecular Biology


ncbi_organism_name: Enterococcus faecium UC8668

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: Denmark

ncbi_isolation_source: Food;Milk Powder

ncbi_organism_name: Cronobacter muytjensii

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: sterile site

ncbi_organism_name: Streptococcus pyogenes


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_assembly_name: freshwater MAG --- D14_bin-0396

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Sputum of Homo sapiens

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: Chunlab


ncbi_country: China: Beijing

ncbi_isolation_source: wound secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chinese PLA General Hospital


ncbi_country: Russia: Sakhalin; Daginskiye Thermal Springs

ncbi_isolation_source: enrichment culture from terrestrial mud volcano

ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Elusimicrobiales bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Butyricicoccus sp.

ncbi_submitter: EMG


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: PA


ncbi_organism_name: Candidatus Midichloria mitochondrii

ncbi_submitter: National Institute of Public Health and Environment (RIVM)


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: huazhong agriculture university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Kyushu University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Bacilli bacterium

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Fulvivirga sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: United Arab Emirates

ncbi_isolation_source: Urine sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sheikh Khalifa General Hospital(SKGH)


ncbi_organism_name: Chitinophaga sp. YIM B06452

ncbi_submitter: Yunnan Institute of Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;f__Chitinophagaceae;g__Chitinophaga;x__unclassified Chitinophaga;s__Chitinophaga sp. YIM B06452


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Jiaxing; Zhejiang

ncbi_isolation_source: chicken wing

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_isolation_source: Richmond Mine AB20 location

ncbi_organism_name: Leptospirillum ferriphilum

ncbi_submitter: University of Queensland


ncbi_submitter: I.N.Blokhina Research Institute of Epidemiology and Microbiology


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Greece

ncbi_isolation_source: Raw sheep milk

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: EMG


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leeuwenhoekiella sp. UBA4164


ncbi_organism_name: Aerococcus sanguinicola

ncbi_submitter: STATENS SERUM INSTITUT


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Glaciimonas sp. Gout2

ncbi_submitter: Aarhus Universitet Tech ENVS


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Rhodoblastus sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: AAFC


ncbi_country: USA: Indiana

ncbi_isolation_source: insect gut; insect collected from Cucurbit plant

ncbi_organism_name: Caballeronia sp. INML3B

ncbi_submitter: Emory University


ncbi_country: Mali

ncbi_isolation_source: stool

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Bordetella avium

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: USA: VA

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_organism_name: Bacillus paranthracis

ncbi_submitter: University Hospital Muenster


ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Microcella sp.

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-1 day 1477

ncbi_organism_name: Candidatus Sumerlaeota bacterium

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__unclassified Candidatus Sumerlaeota;s__Candidatus Sumerlaeota bacterium


ncbi_country: China: Yuandadu Park

ncbi_organism_name: Magnetococcales bacterium

ncbi_submitter: Institute of Geology and Geophysics, Chinese Academy of Sciences


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Segatella copri

ncbi_submitter: Georgia Institute of Technology


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Christian Medical College


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_isolation_source: lake water

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA: Durham; NC

ncbi_isolation_source: urine

ncbi_organism_name: Corynebacterium sp. MSK019

ncbi_submitter: Duke University


ncbi_country: USA: Alachua

ncbi_submitter: University of Florida


ncbi_country: South Korea:Seoul

ncbi_isolation_source: Automobile air-conditioning evaporator

ncbi_organism_name: Methylobacterium brachiatum

ncbi_submitter: Korea university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Helicobacter apodemus

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Portland State University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_submitter: The University of Tokyo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Lentilactobacillus;s__Lentilactobacillus senioris;x__Lentilactobacillus senioris DSM 24302 = JCM 17472


ncbi_country: Brazil: Rio de Janeiro; Parnaso

ncbi_isolation_source: soil

ncbi_organism_name: Mycolicibacterium sp. CBMA 361

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_country: USA: Puerto Rico

ncbi_isolation_source: marine benthic turfs

ncbi_organism_name: Moorena sp. SIO1G6

ncbi_submitter: UCSD


ncbi_submitter: Quadram Institutte


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Guelph


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Queensland


ncbi_assembly_name: freshwater MAG --- Loclat_bin-10882

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_submitter: National Institutes of Health, Malaysia


ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Kineococcus sp. SYSU DK012

ncbi_strain_identifiers: SYSU DK012

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Shewanella algae

ncbi_submitter: Yangzhou University


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Candidatus Eiseniibacteriota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Eiseniibacteriota;s__Candidatus Eiseniibacteriota bacterium


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vulcanibacillus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Blautia stercoris

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_submitter: Tecnologico de Monterrey


ncbi_organism_name: Mesorhizobium sp. ANAO-SY3R2

ncbi_submitter: Kyushu University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: Priestia megaterium

ncbi_submitter: Auburn University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Mongoliitalea lutea

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Pseudarthrobacter sp. YS3

ncbi_submitter: Dongguk university


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: human gut

ncbi_organism_name: Firmicutes bacterium AF22-6AC

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium AF22-6AC


ncbi_country: Atlantic Ocean: Mid-Atlantic Ridge; Guaymas Basin; Black smoker hydrothermal vent

ncbi_isolation_source: marine hydrothermal chimney wall TVG10

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Environmental Microbiology Lab


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M0550

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cornell University


ncbi_country: Netherlands: Amsterdam

ncbi_isolation_source: mucosa of vagina [UBERON:0004983]

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: TNO


ncbi_country: USA: Columbia Basin

ncbi_submitter: USDA/ARS/Molecular Plant Pathology Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrVI (Clover proliferation group);s__Columbia Basin potato purple top phytoplasma


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China

ncbi_isolation_source: Respiratory swab

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_assembly_name: freshwater MAG --- Loclat_bin-05662

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: uncultured Lactobacillus sp.

ncbi_submitter: EMG


ncbi_country: South Africa: KwaZulu-Natal

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of KwaZulu-Natal (UKZN), South Africa


ncbi_country: Saudi Arabia: Rabigh Bay of Saudi Arabia along the Red Sea coast

ncbi_isolation_source: The tissue of Red Sea sponge Carteriospongia foliascens

ncbi_organism_name: Candidatus Synechococcus spongiarum SH4

ncbi_submitter: The Hong Kong University of Science and Technology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Synechococcales;f__Synechococcaceae;g__Synechococcus;s__Candidatus Synechococcus spongiarum;x__Candidatus Synechococcus spongiarum SH4


ncbi_organism_name: Erysipelotrichaceae bacterium I46

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EBI


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: France: Bretagne

ncbi_isolation_source: Poultry

ncbi_submitter: ANSES

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Derby


ncbi_country: Colombia

ncbi_organism_name: Helicobacter pylori NQ4110

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: wound

ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Pittsburgh


ncbi_country: Estonia

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: Guinea-Bissau

ncbi_isolation_source: feces

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Beijing

ncbi_organism_name: Citrobacter sp. Cb027

ncbi_submitter: First Medical Center of Chinese PLA General Hospital


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Sun Yat-sen University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Segatella oulorum


ncbi_assembly_name: Rumen uncultured genome RUG10418

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: South Korea: Gyeongsan

ncbi_isolation_source: natural mineral water

ncbi_organism_name: Pseudomonas mandelii JR-1

ncbi_submitter: Daegu University


ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Kailuan General Hospital


ncbi_country: USA: FL

ncbi_submitter: University of Florida


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: United Kingdom

ncbi_isolation_source: Plant material

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: University of Edinburgh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_country: China: Jiangsu

ncbi_isolation_source: rectum

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: China: Sichuan

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: West China Second University Hospital, Sichuan University


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: nasopharynx

ncbi_submitter: SC


ncbi_isolation_source: Human Oral Subgingival Plaque

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: EMG


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Halieaceae bacterium WMMBA4

ncbi_submitter: Quanzhou Normal University


ncbi_assembly_name: Rumen uncultured genome RUG11703

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: USA: HI

ncbi_isolation_source: Municipal wastewater; Sand Island WWTP

ncbi_submitter: Water Quality and Environmental Biotechnology Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi B;x__Salmonella enterica subsp. enterica serovar Java


ncbi_country: Atlantic Ocean: Mid Cayman Rise

ncbi_isolation_source: Mid-Cayman Rise Vent Fluids

ncbi_organism_name: Thermodesulfobacteriaceae bacterium

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Italy: Verona

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium dentium

ncbi_strain_identifiers: BRDF 23

ncbi_submitter: University of Bologna


ncbi_country: USA: Tennessee

ncbi_isolation_source: RECTAL

ncbi_submitter: St. Jude Children's Research Hospital


ncbi_organism_name: Virgifigura deserti

ncbi_strain_identifiers: SYSU D60014

ncbi_submitter: Sun Yat-Sen University


ncbi_country: USA: CA

ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Vagococcus fluvialis

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_country: Finland

ncbi_organism_name: Weissella paramesenteroides

ncbi_submitter: Helsinki University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.

ncbi_submitter: EBI


ncbi_country: Egypt: Tanta

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: Canada: British Columbia

ncbi_isolation_source: throat

ncbi_organism_name: Pseudoxanthomonas winnipegensis

ncbi_submitter: National Microbiology Laboratory


ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: USA: MI

ncbi_isolation_source: Stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Michigan State University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Tibetan Plateau

ncbi_isolation_source: Tibetan Plateau lake

ncbi_organism_name: Arthrobacter sp. 9E06

ncbi_submitter: Institute of Tibetan Plateau Research


ncbi_organism_name: Fusobacterium nucleatum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Bariatricus massiliensis

ncbi_submitter: URMITE


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Escherichia coli

ncbi_submitter: Paris Saclay University


ncbi_submitter: WAGENINGEN UR


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: imported food: soy sprout

ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University of Zurich


ncbi_isolation_source: Human stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Department of Bioscience, Faculty of Applied Bioscience, Tokyo University of Agriculture


ncbi_isolation_source: feces

ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Turkey

ncbi_isolation_source: nose

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: Phocaeicola vulgatus


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Alcaligenaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: gastric mucosa

ncbi_organism_name: Helicobacter ailurogastricus

ncbi_submitter: University of Antwerp, Belgium


ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Thermodesulfovibrionales bacterium

ncbi_submitter: Northwestern University


ncbi_organism_name: Candidatus Scatomorpha gallistercoris

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Scatomorpha;s__Candidatus Scatomorpha gallistercoris


ncbi_country: USA: North Carolina

ncbi_isolation_source: Trach

ncbi_organism_name: Klebsiella pneumoniae CHS 12

ncbi_strain_identifiers: CHS 12

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;x__Klebsiella pneumoniae CHS 12


ncbi_country: USA: Alachua

ncbi_submitter: University of Florida


ncbi_country: China: Hangzhou

ncbi_isolation_source: body fluid

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: Israel

ncbi_isolation_source: Plant rhizosphere

ncbi_organism_name: Azospirillum brasilense

ncbi_strain_identifiers: Sp 7

ncbi_submitter: Hebrew University of Jerusalem


ncbi_organism_name: Bacteroides thetaiotaomicron


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_organism_name: Xanthomonas citri pv. mangiferaeindicae

ncbi_submitter: NSW Department of Primary Industries

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;x__Xanthomonas citri group;s__Xanthomonas citri;x__Xanthomonas citri pv. mangiferaeindicae


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Lysinibacillus sphaericus

ncbi_submitter: Stazione Zoologica Anton Dohrn


ncbi_organism_name: uncultured Armatimonadetes bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Armatimonadota;x__environmental samples;s__uncultured Armatimonadetes bacterium


ncbi_organism_name: Bacteroidia bacterium

ncbi_submitter: Nanjing University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: uncultured Candidatus Solibacter sp.

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Bryobacterales;f__Solibacteraceae;g__Candidatus Solibacter;x__environmental samples;s__uncultured Candidatus Solibacter sp.


ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Konkuk University


ncbi_organism_name: Mycobacterium sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Planctomycetales bacterium


ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Escherichia coli

ncbi_submitter: Instituto de Biomedicina de Sevilla (IBIS)


ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Ocean University of China


ncbi_organism_name: Oscillospiraceae bacterium


ncbi_organism_name: Rickettsia conorii subsp. raoultii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Rickettsiaceae;x__Rickettsieae;g__Rickettsia;x__spotted fever group;s__Rickettsia conorii;sb__Rickettsia conorii subsp. raoultii


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_organism_name: Turicibacter sanguinis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Acidaminococcus sp. LBK-2

ncbi_submitter: Hebei Normal University of Science &Technology


ncbi_country: Lebanon

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Lebanese American University


ncbi_isolation_source: environmental swab

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Nitrospira defluvii

ncbi_submitter: Innovative Genomics Institute


ncbi_submitter: EMG


ncbi_isolation_source: human gut

ncbi_organism_name: Eubacteriaceae bacterium


ncbi_organism_name: Mycoplasmopsis synoviae

ncbi_submitter: Fujian Academy of Agricultural Sciences


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Russia: Perm krai

ncbi_submitter: Skolkovo Institute of Science and Technology


ncbi_country: Austria

ncbi_organism_name: Metamycoplasma hyosynoviae

ncbi_submitter: Institute of Microbiology


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Actinotignum sanguinis

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Propionibacteriaceae bacterium AM104-82

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: water

ncbi_organism_name: Vibrio parahaemolyticus VPTS-2009

ncbi_submitter: IGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus VPTS-2009


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: APHP, Hopital Robert Debre, IAME, UMR1137


ncbi_organism_name: Achromobacter animicus

ncbi_submitter: School of Agricultural and Veterinary Sciences, Sao Paulo State University (Unesp)


ncbi_organism_name: Gemmiger qucibialis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: University of California at Davis


ncbi_country: Australia

ncbi_isolation_source: vegetable

ncbi_submitter: CSIRO


ncbi_country: South Korea

ncbi_isolation_source: compost

ncbi_organism_name: Stenotrophomonas koreensis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhejiang university


ncbi_submitter: Yonsei University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: India: Kolkata

ncbi_isolation_source: Human gut

ncbi_submitter: ICMR-National Institute of Cholera and Enteric Diseases


ncbi_organism_name: Staphylococcus aureus M1060

ncbi_submitter: Broad Institute


ncbi_country: Australia: Thorneside Wastewater Treatment Plant

ncbi_isolation_source: flocular biomat

ncbi_organism_name: Candidatus Accumulibacter phosphatis

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;x__Betaproteobacteria incertae sedis;g__Candidatus Accumulibacter;s__Candidatus Accumulibacter phosphatis


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_submitter: the seqafrica consortium


ncbi_country: Colombia: Cesar

ncbi_isolation_source: Blood culture

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Universidad El Bosque


ncbi_organism_name: Burkholderiaceae bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Sichuan

ncbi_isolation_source: moist pit mud soil

ncbi_organism_name: Terrilactibacillus sp. S3-3

ncbi_submitter: Chengdu Institute of Biology


ncbi_country: South Africa

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter concisus

ncbi_submitter: Institute of Environmental Science and Research (ESR)


ncbi_isolation_source: left great toe

ncbi_organism_name: Streptococcus sp. HMSC078H03

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: lung

ncbi_organism_name: Legionella pneumophila subsp. fraseri

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Urine


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Clavibacter michiganensis subsp. michiganensis

ncbi_submitter: CINVESTAV


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: Tanzania

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Flavobacteriia bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: Finland

ncbi_isolation_source: sediment

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: University of Helsinki


ncbi_organism_name: Streptococcus suis 88-5299A

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention/State Key Laboratory for Infectious Disease Prevention and Control


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_isolation_source: human gut metagenome

ncbi_submitter: European Bioinformatics Institute


ncbi_country: South Africa: University of Cape Town

ncbi_isolation_source: Thiocyanate ramp bioreactor

ncbi_organism_name: Rhizobiales bacterium 63-7

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: University of Chicago


ncbi_country: China: Yushu prefecture; Qinghai Province

ncbi_isolation_source: the intestinal contents of Marmot

ncbi_organism_name: Arthrobacter sp. zg-Y820

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: USA

ncbi_organism_name: Escherichia coli O157:H7 str. EDL933

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O157:H7;x__Escherichia coli O157:H7 str. EDL933


ncbi_country: China: Henan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_assembly_name: SOAPdenovo for version 3 of the Agrobacterium tumefaciens S33 genome

ncbi_isolation_source: rhizospheric soil of a tobacco plant

ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Shandong University


ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces muensis

ncbi_submitter: University of Tuebingen


ncbi_country: Russia: Bykovsky Peninsula;Polar Fox Lagoon

ncbi_isolation_source: Polar Fox Lagoon sediment taken using 3m corer (60 mm diameter)

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Radboud University Nijmegen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridium mediterraneense

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWD2_42_14


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_country: Malaysia

ncbi_isolation_source: mangrove

ncbi_organism_name: Bacillus sp. MUM 13

ncbi_strain_identifiers: MUM 13

ncbi_submitter: Monash University Malaysia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. MUM 13


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Institute of Veterinary Bacteriology, University of Bern


ncbi_country: China: Shandong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Agricultural University


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Bifidobacterium thermophilum


ncbi_organism_name: Treponema maltophilum ATCC 51939

ncbi_submitter: Broad Institute


ncbi_organism_name: Candidatus Acidiferrum sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Candidatus Acidiferrales;g__Candidatus Acidiferrum;x__unclassified Candidatus Acidiferrum;s__Candidatus Acidiferrum sp.


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Streptomyces caniferus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Egypt: Mansoura

ncbi_isolation_source: Milk and dairy products

ncbi_organism_name: Listeria innocua

ncbi_submitter: USDA-ARS-USNPRC


ncbi_country: South Africa: KwaZulu-Natal

ncbi_isolation_source: Throat and nasal swab

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: University College Cork


ncbi_organism_name: Sphingomonas sp. SORGH_AS_0789

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Enterococcus cecorum

ncbi_submitter: Universiteit Gent


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. 366F10

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 366F10


ncbi_organism_name: Streptomyces sp. NPDC020983

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudorhodoplanes sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: uncultured Terriglobus sp.

ncbi_submitter: Spribille Lab


ncbi_organism_name: Brevundimonas vancanneytii

ncbi_submitter: Biology Centre CAS


ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University of the Philippines Diliman

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Anatum


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Escherichia coli

ncbi_submitter: Universidad Peruana Cayetano Heredia


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured bacterium

ncbi_submitter: EMG


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Desulfovibrionales bacterium


ncbi_country: USA: IN

ncbi_isolation_source: root

ncbi_organism_name: Priestia megaterium

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Paraburkholderia youngii

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: USA: Potomac River; Washington; DC

ncbi_isolation_source: river sediment

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Naval Research Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_organism_name: Gemella morbillorum


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: Brazil: Sao Paulo; Sao Paulo

ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: United Kingdom

ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Jiangsu;Nanjing

ncbi_organism_name: Klebsiella pneumoniae


ncbi_isolate: BM_campo 2.1

ncbi_isolation_source: Tissue

ncbi_organism_name: Burkholderia mallei

ncbi_strain_identifiers: BM_campo 2.1

ncbi_submitter: ANSES


ncbi_organism_name: Lentisalinibacter sediminis

ncbi_submitter: Shandong University at Weihai


ncbi_country: Russia: Moscow

ncbi_isolation_source: compost

ncbi_organism_name: Bacillus amyloliquefaciens

ncbi_submitter: Research Center of Biotechnology RAS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus amyloliquefaciens


ncbi_country: Israel: Beer-Sheva

ncbi_isolation_source: Oropharyngeal Swab

ncbi_organism_name: Kingella negevensis

ncbi_submitter: University of Pennsylvania


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Lactobacillus taiwanensis

ncbi_submitter: EMG


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Lactobacillaceae bacterium


ncbi_isolation_source: Colon


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG10765

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_isolation_source: Faeces


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_assembly_name: Brochothrix thermosphacta  TAP 175

ncbi_isolate: TAP 175

ncbi_isolation_source: Chicken

ncbi_organism_name: Brochothrix thermosphacta

ncbi_strain_identifiers: TAP 175

ncbi_submitter: INRA - Oniris


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Tunisia: Bulla-Regia

ncbi_isolation_source: plant leaf

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: CBBC


ncbi_isolation_source: soil

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Moraniibacteriota;x__unclassified Candidatus Moraniibacteriota;s__Candidatus Moranbacteria bacterium UBA1302


ncbi_submitter: Contra Costa Public Health Laboratory submission group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: USA: Panola Mountain State Park; GA

ncbi_isolate: CLE-AaGA

ncbi_isolation_source: US: Atlanta

ncbi_strain_identifiers: CLE-AaGA

ncbi_submitter: Centers for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Legionellales;f__Coxiellaceae;x__unclassified Coxiellaceae;s__Coxiella-like endosymbiont of Amblyomma americanum


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Beijing

ncbi_isolation_source: freshwater lake anaerobic enchiment culture with carbon source acetate

ncbi_organism_name: Rhodocyclaceae bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_isolation_source: mouse gut metagenome


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Clostridium acetobutylicum

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Singapore

ncbi_isolation_source: Fish part (head) sold as Asian bighead carp; Muscle

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Singapore Streptococcus agalactiae working group


ncbi_organism_name: Candidatus Thiodiazotropha sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus SJOS6061

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Beijing YuGen Pharmaceutical Co., Ltd


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Waltera sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: China: Anhui

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Science and Technology of China


ncbi_isolate: SPRUCE 5

ncbi_organism_name: Roseiarcus sp.

ncbi_strain_identifiers: SPRUCE 5

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: human gut

ncbi_organism_name: Alistipes finegoldii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: Japan

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: Egypt

ncbi_isolation_source: Ground beef

ncbi_submitter: USDA-ARS-USNPRC


ncbi_organism_name: Psychrobacter sp. R86515

ncbi_submitter: Universiteit Gent


ncbi_country: Russia: Shulgan-Tash cave; Bashkiria

ncbi_isolation_source: cave ground

ncbi_organism_name: Polaromonas sp. P2-4

ncbi_submitter: ARRIAM


ncbi_country: China: Weihai

ncbi_isolation_source: offshore sediment

ncbi_organism_name: Sulfitobacter sp. F26204

ncbi_submitter: Shandong University at Weihai


ncbi_organism_name: Megamonas funiformis


ncbi_organism_name: uncultured Klebsiella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Proteus terrae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_submitter: HUN-REN Biological Research Centre, Szeged


ncbi_isolation_source: abdominal fluid

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hangzhou Medical University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Selenomonadaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Nitriliruptoraceae bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: Greece: Agricultural University of Athens

ncbi_isolation_source: roots; endophytic

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Agricultural University of Athens

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China


ncbi_submitter: Tel Aviv Sourasky Medical Center


ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: Denmark

ncbi_isolation_source: Chicken meat

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: Odense University Hospital


ncbi_country: China: Sichuan

ncbi_organism_name: Apibacter sp. B2912

ncbi_submitter: China Agricultural University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Streptococcus pyogenes GA16797

ncbi_submitter: J. Craig Venter Institute


ncbi_country: USA: Tift Co. GA

ncbi_isolation_source: peanut

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: USA: NY

ncbi_isolation_source: water

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Gammaproteobacteria bacterium TMED112

ncbi_submitter: University of Southern California


ncbi_organism_name: Asaia sp. HN128

ncbi_submitter: University of Wisconsin-Madison


ncbi_country: Switzerland

ncbi_organism_name: Clostridium chauvoei

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_isolation_source: not provided

ncbi_organism_name: Bifidobacterium dentium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Microcoleus sp. M2_C4

ncbi_submitter: Palacky University Olomouc


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacillota bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__environmental samples;s__uncultured Bacillota bacterium


ncbi_organism_name: Saprospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Paenibacillus rhizoplanae

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptomyces luteogriseus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Washington University in St. Louis


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: China National Center for Food Safety Risk Assessment


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: University of British Columbia


ncbi_country: Brazil: Blumenau

ncbi_isolation_source: feces

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: cold seep

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Italy: Trento

ncbi_isolation_source: hospital

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Trento


ncbi_country: Taiwan

ncbi_isolation_source: throat swabs

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: Chang Gung University, Taiwan


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom

ncbi_isolation_source: blood

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: SC


ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_country: Russia: Tuva

ncbi_isolation_source: Yoghurt

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Inner Mongolia Agricultural University


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Alistipes inops

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Monash University


ncbi_organism_name: Streptosporangium album

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: Japan: Aoya; Tottori

ncbi_organism_name: Pseudomonas savastanoi

ncbi_submitter: University of Toronto

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_country: France: Besancon

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_organism_name: Helicobacter japonicus


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China

ncbi_isolation_source: skin

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of West London


ncbi_country: China: Guangdong

ncbi_isolation_source: stool

ncbi_submitter: Guangdong CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Weltevreden


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eikenella sp.

ncbi_submitter: EMG


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: University of Chicago


ncbi_country: China: Putuo Mountain; Zhejiang Province

ncbi_isolation_source: soil of mountain

ncbi_organism_name: Kitasatospora sp. CB02891

ncbi_submitter: The scripps research institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Korea: Taean

ncbi_isolation_source: crude oil contaminated seashore

ncbi_organism_name: Arthrobacter sp. MWB30

ncbi_submitter: Korea Basic Science Institute


ncbi_submitter: Soochow University


ncbi_organism_name: Pectobacterium betavasculorum

ncbi_submitter: University of Gdansk


ncbi_organism_name: Serratia marcescens

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_country: Canada: Lethbridge

ncbi_isolation_source: feces

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Lethbridge Research Centre


ncbi_organism_name: uncultured Nitrospira sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: USA

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Broad Institute


ncbi_isolation_source: homo

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: Escherichia coli 435

ncbi_submitter: University Medical Center Utrecht


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_country: Spain

ncbi_isolation_source: pork

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: EPEC 765e

ncbi_submitter: Shanghai Customs


ncbi_country: Brazil

ncbi_isolation_source: Feces

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: activated sludge from wastewater treatment plant

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Northeastern University


ncbi_organism_name: [Eubacterium] infirmum

ncbi_submitter: EMG


ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: Chlamydia suis

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Dysosmobacter sp.

ncbi_submitter: Christian-Albrechts-University Kiel


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: University of Illinois at Urbana Champaign


ncbi_country: USA: Colorado

ncbi_isolation_source: fecal swab male ferret; 6.3 years old

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: Huzhou cdc


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Tepidamorphaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Anaerotruncus colihominis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany: North Rhine-Westphalia; migrating sheep herd

ncbi_isolation_source: ileal mucosa

ncbi_submitter: Friedrich-Loeffler-Institut, Institute of Molecular Pathogenesis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium avium complex (MAC);s__Mycobacterium avium;sb__Mycobacterium avium subsp. paratuberculosis


ncbi_isolation_source: blood

ncbi_organism_name: Neisseria meningitidis NM2795

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Planktomarina sp.

ncbi_submitter: University of Oldenburg


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hopital Bicetre


ncbi_country: Colombia: Tumaco

ncbi_isolation_source: gastric sample

ncbi_organism_name: Helicobacter pylori PZ5024

ncbi_submitter: MIT


ncbi_country: Chile

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Catonella sp.

ncbi_submitter: EMG


ncbi_organism_name: Acinetobacter soli

ncbi_submitter: UCIBIO-FFUP


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: rhizosphere soil culture M56

ncbi_organism_name: Zhihengliuella sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: San Diego; Sunset Cliffs

ncbi_isolation_source: Yellow sponge

ncbi_organism_name: Pseudoalteromonas sp. MMG013

ncbi_submitter: San Diego State University


ncbi_country: Bangladesh: Bogra district

ncbi_organism_name: Ralstonia pseudosolanacearum

ncbi_submitter: University of California Davis


ncbi_isolation_source: Seto Island Sea

ncbi_organism_name: Sulfitobacter sp. M48

ncbi_submitter: The Chinese University of Hong Kong


ncbi_country: USA: Albany

ncbi_isolation_source: indoor dust from athletic faciility hallway

ncbi_organism_name: Pseudomonas oryzihabitans

ncbi_submitter: Northwestern University


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_isolation_source: bovine milk

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_country: USA: Seattle

ncbi_isolation_source: Airway secretion

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SCH


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: Cuba: Parque Nacional Topes de Collantes; Sierra del Escambray

ncbi_isolation_source: termite gut

ncbi_organism_name: Treponema sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: Massachusetts; Nahant; Canoe Cove

ncbi_isolation_source: Filtered Seawater; 1-5 micron fraction

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Synergistales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Salmonella sp. C3226

ncbi_submitter: Sichuan University


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Cutibacterium acnes

ncbi_submitter: Spribille Lab


ncbi_organism_name: Aquidulcibacter sp.

ncbi_submitter: University of Florida


ncbi_organism_name: Collimonas sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Xanthomonas vasicola

ncbi_strain_identifiers: UFU J27

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: uncultured Chitinophaga sp.

ncbi_submitter: EMG


ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: The University of Sheffield


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: freshwater lake; 80 m depth

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Institute of Hydrobiology, Department of Aquatic Microbial Ecology, Biology Centre, CAS


ncbi_organism_name: Cellulophaga omnivescoria

ncbi_submitter: Dalian University


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Roseburia faecis

ncbi_submitter: UIUC


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Gemmatimonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Gemmatimonadota;x__environmental samples;s__uncultured Gemmatimonadota bacterium


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_country: France

ncbi_isolation_source: feces

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD16553

ncbi_submitter: Broad Institute


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: ECBC


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotellamassilia sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured bacterium


ncbi_isolation_source: CCTCC

ncbi_submitter: Wuhan University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis;x__Bacillus subtilis subsp. subtilis str. 168


ncbi_organism_name: Exiguobacterium indicum

ncbi_submitter: University of Illinois at Urbana Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;s__Exiguobacterium indicum


ncbi_organism_name: Oceanisphaera sediminis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EBI


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Michigan


ncbi_country: USA: Massachusetts

ncbi_isolation_source: zooplankton collected from plum island

ncbi_organism_name: Vibrio crassostreae 9ZC88


ncbi_country: Japan

ncbi_organism_name: Thermotoga petrophila RKU-10

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis