ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


gtdb_representative: t

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


gtdb_representative: f

ncbi_assembly_level: Scaffold

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: The Fifth Affiliated Hospital of Southern Medical University


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: BiOSSE


ncbi_organism_name: Aerococcus sp. NPDC058936

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Syntrophorhabdus sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Noguchi Memorial Institute for Medical Research


ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Linnaeus University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Rubricoccaceae bacterium


ncbi_organism_name: Thiolapillus sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Escherichia coli

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: University of Tennessee


ncbi_country: Ireland

ncbi_isolation_source: Cerebrospinal fluid

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University College Cork


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Dokdonella fugitiva

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Duodenibacillus sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: EMG


ncbi_country: South Korea

ncbi_isolation_source: food

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Microbial Institute for Fermentation Industry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Limnobacter sp.


ncbi_country: Russia

ncbi_organism_name: Lactobacillus delbrueckii subsp. allosunkii

ncbi_strain_identifiers: CIRM BIA 266

ncbi_submitter: Agroscope


ncbi_country: Australia: Canberra

ncbi_isolation_source: Hot water system

ncbi_organism_name: Geobacillus sp. DSP4a

ncbi_submitter: Institute for Applied Ecology - University of Canberra


ncbi_country: Haiti: Cholera Treatment Center; Gressier

ncbi_isolation_source: Stool; Clinical

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: University of Florida


ncbi_isolation_source: anammox granule sludge

ncbi_organism_name: Ignavibacteriaceae bacterium

ncbi_submitter: Chongqing university


ncbi_country: Australia: Melbourne

ncbi_isolation_source: cough swab

ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Monash University


ncbi_isolation_source: Hepatopancrea

ncbi_submitter: Yangzhou University


ncbi_country: USA: East Boothbay ME

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Planktomarina sp.

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Gastric tissue

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Escuela Nacional de Ciencias Biologicas, Instituto Politecnico Nacional


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: China Agricultural University


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: CA

ncbi_isolation_source: salmon

ncbi_organism_name: Photobacterium phosphoreum

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Paludibacter sp.

ncbi_submitter: University of Waterloo


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affliated Hospital of Kunming Medical University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Croceivirga sp.

ncbi_submitter: The University of Melbourne


gtdb_type_species_of_genus: t

ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Melioribacter roseus P3M-2

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Australia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Sydney


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Hadar


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: Australia: Western

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: µFORGE


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_organism_name: uncultured Lachnoclostridium sp.


ncbi_country: Thailand

ncbi_isolation_source: sputum


ncbi_organism_name: Burkholderia pseudomallei


ncbi_organism_name: Phocaeicola dorei


ncbi_country: USA: Boston; MA; USA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M1134

ncbi_submitter: Broad Institute


ncbi_organism_name: Brevinematales bacterium

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_refseq_category: reference genome

ncbi_submitter: DOE Joint Genome Institute

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: China: Yangzhou

ncbi_isolation_source: floor wipe

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Bacteroides acidifaciens

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: feces

ncbi_organism_name: Paramuribaculum intestinale


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Thiobacillaceae bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: China: Chengdu

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Western Australia


ncbi_isolation_source: Lymph node

ncbi_organism_name: Brucella suis

ncbi_submitter: ANSES


ncbi_organism_name: Providencia manganoxydans

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: laboratory control strain

ncbi_organism_name: Chryseobacterium piperi

ncbi_strain_identifiers: ATCC BAA-1782

ncbi_submitter: FDA


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: Georgia Institute of Technology


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Stutzerimonas stutzeri

ncbi_submitter: University of Queensland


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Campylobacter sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: uncultured Pseudoalteromonas sp.

ncbi_submitter: EMG


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Universiti Putra Malaysia


ncbi_country: Tanzania: Zanzibar

ncbi_isolation_source: stool

ncbi_submitter: University of Bern


ncbi_organism_name: Thioalkalivibrio sp. ALE9

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Neisseria bergeri

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Helicobacter japonicus


ncbi_country: Indian Ocean: Longqi hydrothermal vent field; ultraslow-spreading Southwestern Indian Ridge

ncbi_isolation_source: active black smoker DFF12

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Second Organization of Oceanography, State Oceanic Administration


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: India:Cochin; Kochi; Valappu Market

ncbi_isolation_source: ice

ncbi_organism_name: Escherichia coli

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: USA: WA

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: University of Washington


ncbi_organism_name: uncultured Bacillales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Pakistan: Multan; Punjab

ncbi_isolation_source: leaves

ncbi_organism_name: Pantoea sp. M_9

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Russia

ncbi_isolation_source: food: cabbage

ncbi_organism_name: Yersinia pseudotuberculosis

ncbi_submitter: SC


ncbi_isolation_source: rat gut

ncbi_organism_name: Lachnoclostridium sp. UBA7097


ncbi_country: USA: MO

ncbi_isolation_source: Young Chickens

ncbi_organism_name: Enterococcus faecalis

ncbi_strain_identifiers: CVM N59847F

ncbi_submitter: FDA


ncbi_organism_name: Shewanella sp. BJSY2023SW002

ncbi_submitter: Hangzhou CDC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Phocaeicola vulgatus


ncbi_isolation_source: Food (meat)

ncbi_organism_name: Escherichia coli O55:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: University of Queensland


ncbi_country: Austria

ncbi_isolation_source: wound

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: AGES


ncbi_country: China: Guangdong

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Institute of Military Veterinary Science, the Academy of Military Medical Sciences


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus safensis

ncbi_submitter: BGI


ncbi_organism_name: Shewanella baltica


ncbi_strain_identifiers: R968;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Australia: Magnetic Island; QLD

ncbi_organism_name: Clostridia bacterium


ncbi_organism_name: bacterium 1xD42-87


ncbi_isolation_source: lobster tail

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000228


ncbi_country: China

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Sichuan University


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_organism_name: Xanthobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Guangxi University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Subdoligranulum sp.

ncbi_submitter: EMG


ncbi_organism_name: Myxococcota bacterium

ncbi_submitter: University of Utah


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Heyndrickxia faecalis

ncbi_submitter: Christian Medical College


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Microbiology, Veterinary University Vienna


ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: Agroscope


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Liquorilactobacillus hordei

ncbi_submitter: Teagasc


ncbi_submitter: Hopital Robert Debre, APHP - Universite Paris Cite, IAME, INSERM, Paris, France


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Norwegian National Advisory Unit on Detection of Antimicrobial Resistance


ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Porphyrobacter sp.


ncbi_organism_name: Bartonella sp. AP20NXHL

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Teesside University


ncbi_organism_name: Bacteroides uniformis


ncbi_organism_name: Bacillus paranthracis

ncbi_strain_identifiers: TIAC 37

ncbi_submitter: Ghent University


ncbi_submitter: China Medical University


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Land Crab Microbiome Project Submissions


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: Brazil: Braganca

ncbi_submitter: LNCC


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Anaerolineae bacterium

ncbi_submitter: Karlsruhe Institute of Technology


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Microbacteriaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Copenhagen


ncbi_country: Viet Nam: Danang

ncbi_isolation_source: Marine

ncbi_organism_name: Streptomyces sp. VN1

ncbi_submitter: Institute of biomolecule reconstruction


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 0.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPLOWO2_02_FULL_54_13


ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: China: Shenzhen

ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: City University of Hong Kong


ncbi_submitter: Northeast Forestry University


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Decatur; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: United Kingdom: Somerset

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_assembly_level: Chromosome

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: GADVASU, LUDHIANA, PUNJAB, INDIA


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O145:H28

ncbi_submitter: Department of Bacteriology, Faculty of Medical Sciences, Kyushu University


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: South Korea: Seoul

ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Yonsei University


ncbi_country: Uganda

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis UT0048

ncbi_submitter: Broad Institute


ncbi_country: USA: California; Eel River; South Fork Eel near Cedar Creek

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Oscillatoriales cyanobacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_organism_name: Psychrobacter pacificensis

ncbi_submitter: Tang lab


ncbi_country: Philippines: Los Banos; Laguna

ncbi_isolation_source: eggshell rinse from eggs sold at select retail stores

ncbi_submitter: BioAssets Corporation

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Adelaide


ncbi_organism_name: Lactococcus lactis

ncbi_submitter: South China University of Technology


ncbi_country: South Africa: Soweto; Gauteng

ncbi_isolation_source: stool

ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_organism_name: Yersinia enterocolitica

ncbi_submitter: Institut Pasteur


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Candidatus Polarisedimenticolia;o__Candidatus Polarisedimenticolales;f__Candidatus Polarisedimenticolaceae;x__unclassified Candidatus Polarisedimenticolaceae;s__Candidatus Polarisedimenticolaceae bacterium


ncbi_organism_name: Corynebacterium pseudotuberculosis

ncbi_submitter: Sichuan Agricultural University


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 16553_9

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Bacteroides timonensis

ncbi_submitter: ebi


ncbi_isolate: Muribaculaceae sp. Strain X

ncbi_organism_name: Muribaculaceae bacterium

ncbi_strain_identifiers: Muribaculaceae sp. Strain X

ncbi_submitter: Naseer


ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_organism_name: Micromonospora sp. NBC_01813

ncbi_submitter: Technical University of Denmark


ncbi_isolate: wBor

ncbi_isolation_source: total DNA from 20 embryos

ncbi_organism_name: Wolbachia pipientis

ncbi_strain_identifiers: wBor

ncbi_submitter: MRC-UNIVERSITY OF GLASGOW CENTRE FOR VIRUS RESEARCH


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: CO

ncbi_isolation_source: feces (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Malaysia

ncbi_isolation_source: pus

ncbi_organism_name: Aeromonas hydrophila 187

ncbi_submitter: University of Malaya


ncbi_country: USA: California

ncbi_isolation_source: water

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: USDA, ARS, WRRC


ncbi_isolation_source: Caecum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Ann Arbor; Michigan

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Michigan


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhengzhou University


ncbi_country: USA: MN

ncbi_isolation_source: leaf

ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: UNC Chapel Hill


ncbi_country: China: Tianjin

ncbi_isolation_source: soil

ncbi_organism_name: Corynebacterium glutamicum

ncbi_submitter: Tianjin university of science and technology


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centre for Infectious Disease Research in Zambia


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_organism_name: Butyricicoccus sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus parasanguinis


ncbi_organism_name: Maribacter dokdonensis

ncbi_submitter: University of Southern California


ncbi_country: Italy

ncbi_isolation_source: fermented vegetebles

ncbi_organism_name: Leuconostoc pseudomesenteroides

ncbi_strain_identifiers: CIRM-BIA 1262

ncbi_submitter: Brigham Young University


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: South Africa: Thulasizwe Hopsital

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis TKK_04_0097

ncbi_submitter: Broad Institute


ncbi_country: France

ncbi_isolation_source: plant tissue showing soft rot symptoms

ncbi_organism_name: Dickeya solani

ncbi_submitter: INRA Unite de Recherche en Biotechnologie


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: uncultured Bartonella sp.


ncbi_country: United Kingdom:England


ncbi_organism_name: Aquibaculum sediminis

ncbi_submitter: Xinjiang Institute of Ecology and Geography Chinese Academy of Sciences


ncbi_organism_name: Bacteroides eggerthii


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_country: United Kingdom: Leicestershire

ncbi_isolation_source: dog mouth

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: UC Davis


ncbi_country: China: Xinjiang

ncbi_isolation_source: Vineyard Soil

ncbi_organism_name: Pseudomonas simiae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: stool

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_submitter: University of South Australia


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Yale University


ncbi_country: USA: IA

ncbi_isolation_source: core

ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Chlamydia trachomatis L2b/CV204

ncbi_submitter: Sanger Institute


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing macro&micro-test Bio-Tech Co.Ltd


ncbi_country: China: Shenzhen; Nanshan

ncbi_organism_name: Aeromonas caviae

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: Human sample

ncbi_organism_name: Pandoraea sputorum

ncbi_submitter: LM-UGent


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Enterococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: nankai university


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Blokhina Scientific Research Institute of Epidemiology and Microbiology of Nizhny Novgorod


ncbi_country: New Zealand

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Massey University


ncbi_organism_name: Candidatus Rhabdochlamydia sp. T3358

ncbi_submitter: Lausanne University Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Parachlamydiales;f__Candidatus Rhabdochlamydiaceae;g__Candidatus Rhabdochlamydia;x__unclassified Candidatus Rhabdochlamydia;s__Candidatus Rhabdochlamydia sp. T3358


ncbi_country: Atlantic Ocean

ncbi_isolation_source: plastic

ncbi_organism_name: Vibrio sp. D420a

ncbi_submitter: NIOZ Royal Netherlands Institute for Sea Research


ncbi_organism_name: Caldifermentibacillus hisashii

ncbi_submitter: Penn State


ncbi_organism_name: Actinobacillus pleuropneumoniae

ncbi_submitter: Universite Laval


ncbi_organism_name: Shigella flexneri

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Providencia stuartii

ncbi_submitter: Miguel Servet University Hospital


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Leptolinea sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Shandong Academy of Agricultural Sciences


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: anoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Phascolarctobacterium succinatutens


ncbi_organism_name: Streptomyces sp. NPDC058545

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Alistipes putredinis


ncbi_organism_name: Morganella morganii

ncbi_submitter: Beijing Chao-yang Hospital


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Medical Mycology Research Center


ncbi_organism_name: Bacillus sp. 196mf

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. 196mf


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Austwickia chelonae NBRC 105200

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_country: USA: Hawaii

ncbi_organism_name: Leptospira noguchii str. 1993005606

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Aeromonas caviae

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_country: Costa Rica

ncbi_organism_name: Shigella sonnei

ncbi_submitter: SC


ncbi_organism_name: Parvularcula dongshanensis


ncbi_country: USA

ncbi_isolation_source: Wound

ncbi_strain_identifiers: MRSA


ncbi_organism_name: Alistipes sp.


ncbi_country: South Africa

ncbi_isolation_source: soil

ncbi_organism_name: Hymenobacter sp. CRA2

ncbi_submitter: Centre for Microbial Ecology and Genomics, University of Pretoria,


ncbi_organism_name: Pectobacterium betavasculorum

ncbi_strain_identifiers: NCPPB 2795

ncbi_submitter: Food and Environment Research Agency


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Spirochaetales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_country: India

ncbi_organism_name: Pantoea dispersa

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Kytococcus sedentarius

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Jiangsu;Nanjing

ncbi_isolation_source: sputum

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Nanjing Drum Tower Hospital


ncbi_organism_name: Emticicia sp.

ncbi_submitter: EPFL


ncbi_country: USA: Blacksberg; Virginia

ncbi_isolation_source: sub-gingival plaque oral cavity

ncbi_submitter: The Forsyth Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;x__unclassified Peptostreptococcaceae;s__Peptostreptococcaceae bacterium oral taxon 081


ncbi_country: Tonga

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Belgium

ncbi_isolation_source: Lab generated

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Antwerpen


ncbi_organism_name: Vandammella animalimorsus

ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: BGI-Shenzhen


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_isolation_source: wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hebei Medical University


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Manipur University


ncbi_organism_name: Phascolarctobacterium sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Romania

ncbi_organism_name: Mycobacterium tuberculosis 2094HD

ncbi_submitter: Broad Institute


ncbi_organism_name: Piscinibacter sp.

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Northern Territory

ncbi_organism_name: Burkholderia diffusa

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Robinsoniella sp.

ncbi_submitter: EBI


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Mexico: Guadalajara

ncbi_isolation_source: Other secretions

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Centro de Ciencias Genomicas


ncbi_country: Germany

ncbi_isolation_source: Food production environment

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Parolsenella catena

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Shandong

ncbi_isolation_source: chicken legs and breast from supermarket

ncbi_submitter: College of Veterinary Medicine,China Agricultural University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: EMG


ncbi_isolation_source: sediment

ncbi_organism_name: Marinobacter nauticus

ncbi_submitter: Peking University Shenzhen Institute


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Christian Medical College

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F19470


ncbi_country: Japan

ncbi_organism_name: Mycoplasmoides pneumoniae

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: China: Gansu

ncbi_submitter: Center for Disease Control and Prevention of Chinese PLA


ncbi_country: Sweden

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Uppsala University


ncbi_organism_name: Pseudomonas sp. YQ_6

ncbi_submitter: WenZhou Medical University


ncbi_country: Brazil: Belo Horizonte;Pampulha Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces


ncbi_organism_name: Akkermansia muciniphila


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bifidobacterium sp.


ncbi_country: Estonia

ncbi_isolation_source: milk

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_country: China: Wenzhou

ncbi_isolation_source: stool from neonate

ncbi_submitter: Monash University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_country: China: Sichuan

ncbi_isolation_source: fish

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_assembly_name: Genome of Burkholderia sp. R-70036

ncbi_country: Belgium: Ghent

ncbi_isolation_source: top soil (details in SAMN11609840)

ncbi_organism_name: Paraburkholderia aspalathi

ncbi_submitter: LM-UGent


ncbi_country: USA: Pine Grove; Pennsylvania

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_organism_name: Streptomyces sp. B21-088

ncbi_submitter: Agriculture and Agri-food Canada


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: University of Oxford


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Megamonas funiformis


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_isolation_source: Shunt fluid


ncbi_country: Algeria: Oued Beni Azza stream near Ben Khellil; Blida

ncbi_isolation_source: Stream water

ncbi_organism_name: Vibrio paracholerae

ncbi_submitter: Pasteur Institute of Algeria


ncbi_isolation_source: urethral swab

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Harvard T.H. Chan School of Public Health


ncbi_country: Netherlands

ncbi_isolation_source: CSF


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_country: Australia

ncbi_isolation_source: dairy food production facility

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Teagasc Food Research Centre


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_assembly_name: Rumen uncultured genome RUG14597

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: EMG


ncbi_country: United Kingdom: Nottingham

ncbi_isolation_source: heel wound

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AF102-41

ncbi_submitter: BGI-Shenzhen


ncbi_country: Hungary: Budapest

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Corynebacterium accolens

ncbi_submitter: Semmelweis University


ncbi_organism_name: Cyanobium sp.

ncbi_submitter: University of Duisburg Essen


ncbi_country: France

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Israel

ncbi_organism_name: Shigella sonnei


ncbi_organism_name: Streptococcus pneumoniae


ncbi_isolation_source: soil isolate

ncbi_organism_name: Ectopseudomonas mendocina

ncbi_submitter: New England Biolabs, Inc.


ncbi_country: Australia: NSW

ncbi_organism_name: Escherichia coli

ncbi_submitter: Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Washington University School of Medicine


ncbi_country: South Korea

ncbi_isolation_source: kimchi

ncbi_organism_name: Latilactobacillus curvatus

ncbi_submitter: KOREA FOOD RESEARCH INSTITUTE


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Candidatus Sedimenticola sp. 6PFRAG5

ncbi_submitter: University of Vienna


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Anaerotignum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolate: SZAS TMP-86

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_strain_identifiers: SZAS TMP-86

ncbi_submitter: The University Hong Kong


ncbi_country: Canada:Ellesmere Island; Lake A

ncbi_isolation_source: High-Arctic meromictic Lake A

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Universite Laval


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: temperate grassland biome

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: USA: Rantoul

ncbi_isolation_source: anaerobic digester sludge

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Sphingobacterium spiritivorum

ncbi_submitter: Universite Paris Saclay


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Alistipes finegoldii


ncbi_organism_name: Collinsella sp.


ncbi_organism_name: Candidatus Multivorans sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Thermoanaerobaculia;o__Candidatus Multivoradales;f__Candidatus Multivoraceae;g__Candidatus Multivorans;x__unclassified Candidatus Multivorans;s__Candidatus Multivorans sp.


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 6 / F; 5m depth; 0.2 filter

ncbi_organism_name: Nitrospirae bacterium GWF2_44_13

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium GWF2_44_13


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: Streptomyces sp. NPDC057242

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Anqing First People's Hospital of Anhui Medical University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Switzerland

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Bern


ncbi_isolation_source: adenocarcinoma in cecum

ncbi_organism_name: Morganella morganii

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: St. Xavier's College (Autonomous), Kolkata


ncbi_isolation_source: metagenome

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Japan:Arima Onsen

ncbi_organism_name: Rhodothermus marinus

ncbi_submitter: National Institute of Advanced Industrial Science and Technology


ncbi_country: France: Saint Malo

ncbi_isolation_source: Sea water

ncbi_organism_name: Vibrio alginolyticus

ncbi_submitter: University of Malaya


ncbi_country: Ethiopia

ncbi_isolation_source: root nodule

ncbi_organism_name: Mesorhizobium sp. AA23

ncbi_submitter: Curtin University


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Bacteroides sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_assembly_name: Rumen uncultured genome RUG14398

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Japan

ncbi_isolation_source: cruid oil

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University


ncbi_country: India: Madhya Pradesh; Sehore; Padli

ncbi_organism_name: Mesorhizobium sp.

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: Malaysia: Perak

ncbi_isolation_source: mangrove soil

ncbi_organism_name: Hahella sp. CCB-MM4

ncbi_submitter: Center For Chemical Biology, USM


ncbi_country: USA: Virginia

ncbi_isolation_source: nasopharyngeal swab

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: James Madison University


ncbi_isolation_source: thermophilic anaerobic digester

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Haemophilus paraphrohaemolyticus

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Pantoea vagans


ncbi_country: China: Hong Kong; Shek Wu Hui wastewater treatment plant

ncbi_isolation_source: sludge

ncbi_organism_name: Bacteroidales bacterium UBA2030

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2030


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Rumen uncultured genome RUG659

ncbi_organism_name: uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Adolfo Lutz


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Mollicutes bacterium

ncbi_submitter: AAFC


ncbi_organism_name: Pseudomonas sp. Env-82

ncbi_submitter: University of Copenhagen


ncbi_country: Turkey

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium leguminosarum

ncbi_strain_identifiers: SarikayaA

ncbi_submitter: UNIVERSITY OF CALIFORNIA DAVIS


ncbi_country: USA

ncbi_organism_name: Clostridioides difficile DA00174

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Russia: Moscow region

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: SRCAMB


ncbi_country: USA: Wyoming

ncbi_isolation_source: retail meat

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Wyoming


ncbi_organism_name: Nitratireductor sp.

ncbi_submitter: The University of Hong Kong


ncbi_country: United Kingdom

ncbi_isolation_source: sputum

ncbi_organism_name: Pandoraea apista

ncbi_submitter: Public Health England


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Gallionella sp.

ncbi_submitter: University of Waterloo


ncbi_isolation_source: NEUS_D2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Parabacteroides sp.


ncbi_country: USA: VA

ncbi_isolation_source: creek water

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Center for Food Safety and Applied Nutrition


ncbi_organism_name: Yersinia enterocolitica

ncbi_strain_identifiers: CMP 84

ncbi_submitter: Sassari University


ncbi_country: Portugal: National Park of Peneda-Geres; Ermida

ncbi_isolation_source: forest soil

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: Universidade do Minho


ncbi_submitter: University of the Philippines Diliman


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Streptomyces sp. BK205

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Australia: Sydney

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: University of Sydney


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: Spain: Barbate; Cadiz

ncbi_isolation_source: Floral nectar

ncbi_organism_name: Rosenbergiella gaditana

ncbi_submitter: Complutense University of Madrid


ncbi_organism_name: Burkholderia pseudomallei


ncbi_country: Thailand: Mahidol University (Siriraj Hospital and Mahidol-Oxford Research Unit)

ncbi_organism_name: Burkholderia pseudomallei K96243

ncbi_submitter: Los Alamos National Laboratory


ncbi_country: China: Central China Fuwai Hospital of Zhengzhou University

ncbi_isolation_source: Blood from patient

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: YangZhou university


ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: NHS Scotland

ncbi_organism_name: Escherichia coli

ncbi_submitter: UNIVERSITY OF GLASGOW


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Butyrivibrio sp.

ncbi_submitter: EMG


ncbi_country: South Africa: Capetown

ncbi_isolation_source: biofilm fraction from bioreactor innoculated with Activated Sludge Tailings Effluent Remediation (ASTER); culture conditions: molasses with increasing thiocyanate until 250 mg/L maintanence

ncbi_organism_name: Devosia sp.

ncbi_submitter: Jill Banfield Lab (University of California Berkeley)


ncbi_country: India: Diphu; Assam

ncbi_isolation_source: Soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Assam Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. arizonae;x__Salmonella enterica subsp. arizonae serovar 51:g,z51:-


ncbi_organism_name: uncultured Chitinophagales bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Chitinophagia;o__Chitinophagales;x__environmental samples;s__uncultured Chitinophagales bacterium


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F26884

ncbi_submitter: Broad Institute


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_isolation_source: Deep Tissue

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Basel


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_assembly_name: Rumen uncultured genome RUG12465

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_country: Brazil

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Universidade Federal de Minas Gerais


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: Arizona

ncbi_isolation_source: Gut

ncbi_organism_name: Gilliamella apicola

ncbi_submitter: Norwegian University of Life Sciences (NMBU)


ncbi_organism_name: Enterococcus asini

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University


ncbi_organism_name: Staphylococcus aureus H31086


ncbi_country: Netherlands: Utrecht

ncbi_isolation_source: swab

ncbi_organism_name: Staphylococcus pseudintermedius

ncbi_submitter: Utrecht University


ncbi_isolation_source: drinking water

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Tianjin Centers for Disease Control and Prevention


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Balneola sp.

ncbi_submitter: China University of Geosciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Microthrixaceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0953


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Tepidiphilus sp. J10

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: Brazil: Minas Gerais

ncbi_isolation_source: Rock nearby Barbacenia macrantha specimens

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: The Genomics for Climate Change Research Center (GCCRC)


ncbi_organism_name: Sellimonas intestinalis

ncbi_submitter: EMG


ncbi_organism_name: Chloroflexales bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Prochlorococcus marinus


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Havana


ncbi_organism_name: Kribbella sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Trueperaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: College of Life Sciences, Sichuan University


ncbi_organism_name: Myxococcus fulvus

ncbi_submitter: University of Mississippi


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pretoria


ncbi_organism_name: uncultured Ferruginibacter sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_organism_name: Streptococcus salivarius

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Komagataeibacter rhaeticus

ncbi_submitter: Teagasc


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Mycoplasmatota bacterium

ncbi_submitter: UNIVERSITY OF COPENHAGEN

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;x__environmental samples;s__uncultured Mycoplasmatota bacterium


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Azospirillum lipoferum

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_country: China: Chengdu

ncbi_isolation_source: mud

ncbi_organism_name: Atopobiaceae bacterium UBA5428

ncbi_submitter: University of Queensland


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Proteinivorax hydrogeniformans

ncbi_submitter: National Research Center "Kurchatov Institute"


ncbi_organism_name: Streptococcus suis

ncbi_submitter: AMSTERDAM UMC


ncbi_country: Italy

ncbi_isolation_source: BAL

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sapienza University of Rome


ncbi_isolate: XDR-PA

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: XDR-PA

ncbi_submitter: Institut d'Investigacio Sanitaria de Palma


ncbi_country: Canada: Atlantic

ncbi_isolation_source: Herd 416

ncbi_organism_name: Staphylococcus epidermidis

ncbi_strain_identifiers: SNUC 1329

ncbi_submitter: University of Calgary


ncbi_country: Russia: Kichkino; Zavetinsky District; Rostov Region

ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine


ncbi_country: Denmark: Region of Southern Denmark

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus oralis subsp. oralis

ncbi_submitter: Slagelse Hospital


ncbi_country: Russia: Irkutsk; Ushakovka river

ncbi_isolation_source: silt

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor


ncbi_isolation_source: faecal

ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: SC


ncbi_organism_name: Bacillus sp. T3

ncbi_submitter: KYUNGPOOK NATIONAL UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. T3


ncbi_organism_name: Providencia stuartii

ncbi_submitter: National Institute of Biotechnology


ncbi_organism_name: uncultured Dehalococcoidia bacterium

ncbi_submitter: EMG


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Mediterranean Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Cellvibrionales bacterium TMED148

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: New York

ncbi_isolation_source: municipal water

ncbi_organism_name: Spirosoma sp. 209

ncbi_submitter: SUNY Cortland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;o__Cytophagales;f__Cytophagaceae;g__Spirosoma;x__unclassified Spirosoma;s__Spirosoma sp. 209


ncbi_country: China: Hangzhou

ncbi_organism_name: Salmonella sp. S132_54197

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Sylt; Koenigshafen

ncbi_organism_name: Rhodopirellula baltica WH47

ncbi_submitter: MIMAS


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Shenzhen Centre for Disease Control and Prevention


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: 2003wt genome assembly

ncbi_isolate: 2003wt genome assembly

ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_strain_identifiers: 2003wt genome assembly

ncbi_submitter: UNIVERSITY OF OSLO


ncbi_organism_name: Streptomyces sp. KhCrAH-340

ncbi_submitter: DOE Joint Genome Institute


ncbi_assembly_name: Rumen uncultured genome RUG10192

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Streptococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: University of Michigan


ncbi_country: Canada: Sumas Prairie

ncbi_isolation_source: surface water

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of British Columbia


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Institute of Animal Husbandry and Veterinary, Hubei Academy of Agricultural Sciences


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Nonomuraea wenchangensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil

ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Oswaldo Cruz Institute


ncbi_submitter: University of Bern


ncbi_country: South Korea

ncbi_isolation_source: forest soil

ncbi_organism_name: Chryseobacterium viscerum

ncbi_submitter: Kyonggi University


ncbi_organism_name: Brevibacterium aurantiacum


ncbi_country: Canada: Ontario

ncbi_isolation_source: Mine wastewater

ncbi_organism_name: Acidovorax sp. 24-64-9


ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Washington University School of Medicine


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Neisseria gonorrhoeae 1291

ncbi_submitter: Broad Institute


ncbi_country: China: Qinghai Province; Yushu; Hoh Xil

ncbi_isolation_source: feces

ncbi_organism_name: Actinomyces sp. Z3

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: University of Copenhagen


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Neglectibacter sp.


ncbi_country: China

ncbi_isolation_source: Environment

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Yancheng

ncbi_isolation_source: sputum

ncbi_submitter: The second Affiliated Hospital of Soochow University


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Zhejiang University


ncbi_organism_name: Shigella sp. FC6510

ncbi_submitter: Ministry of Science and Technology of China


ncbi_organism_name: Providencia huaxiensis

ncbi_submitter: Zhejiang Provincial People's Hospital (Affiliated People's Hospital, Hangzhou Medical College)


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Ohio

ncbi_isolation_source: respiratory

ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: JCVI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_country: USA: Boston; MA

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus M0443


ncbi_assembly_name: Salmonella enterica CVM N43831 v1.0

ncbi_country: USA: NY

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_submitter: Shandong Academy of Agricultural Science

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: EMG


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus OCMM6103

ncbi_submitter: Broad Institute


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Huzhou CDC


ncbi_isolation_source: human gut

ncbi_organism_name: Collinsella aerofaciens


ncbi_organism_name: Prolixibacter sp.

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_assembly_name: Brucella abortus I-34

ncbi_country: Russia

ncbi_organism_name: Brucella abortus

ncbi_submitter: Stavropol Plague Control Reseach Institute


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_country: South Africa: Bushbuckridge; Mpumalanga

ncbi_isolation_source: stool

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Stanford University School of Medicine


ncbi_country: Netherlands

ncbi_isolation_source: Dairy starter

ncbi_organism_name: Lactococcus lactis subsp. lactis

ncbi_submitter: Radboudumc


ncbi_country: Australia

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense

ncbi_submitter: SC


ncbi_isolation_source: microbial mat

ncbi_organism_name: Planktothrix sp. UBA8402

ncbi_submitter: University of Queensland


ncbi_country: Australia: Davies Reef

ncbi_organism_name: bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycolicibacterium sp.

ncbi_submitter: University of South Africa


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Saint-Louis Hospital


ncbi_organism_name: Nonomuraea sp. NPDC049655

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Bifidobacterium longum

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sri Ramachandra Institute of Higher Education and Research


ncbi_country: Germany: Goettingen

ncbi_isolation_source: wastewater

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Thiothrix sp.

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: Kasetsart University


ncbi_organism_name: Xanthomonas campestris pv. campestris

ncbi_submitter: University of Amsterdam


ncbi_organism_name: Psychrobacter sp. AOP22-C1-22

ncbi_submitter: French National Institute for Agriculture, Food, and Environment (INRAE)


ncbi_organism_name: Elusimicrobiaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Pacific Ocean: East Pacific Rise

ncbi_isolation_source: Deepsea hydrothermal sulfide chimney

ncbi_organism_name: Chlorobiota bacterium

ncbi_submitter: Lab of Microbial Oceanography

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Chlorobiota;x__unclassified Chlorobiota;s__Chlorobiota bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: Reyranellaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Pleurocapsa sp.


ncbi_submitter: University of Exeter


ncbi_organism_name: uncultured Akkermansia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: Universite de Limoges


ncbi_country: Canada:Athabasca Oil Sands

ncbi_isolation_source: waste water

ncbi_organism_name: Thermoleophilia bacterium UBA2241

ncbi_submitter: University of Queensland


ncbi_organism_name: Mariniblastus sp.

ncbi_submitter: Rutgers University


ncbi_country: USA: Maine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Maine at Presque Isle


ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute of Animal Health


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Parasutterella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Actinomyces radicidentis

ncbi_submitter: EMG


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Candidatus Cloacimonadota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;x__unclassified Candidatus Cloacimonadota;s__Candidatus Cloacimonadota bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Verrucomicrobium sp. BvORR034

ncbi_submitter: Hokkaido Agricultural Research Center, National Agriculture and Food Research Organization.


ncbi_country: Cameroon: Yaounde

ncbi_isolation_source: river water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centre pasteur du Cameroun


ncbi_country: Taiwan: Hsinchu

ncbi_isolation_source: stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Institute of Molecular and Cellular Biology


ncbi_country: Viet Nam:Hanoi

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_country: India: Thoubal district

ncbi_isolation_source: Seed

ncbi_organism_name: Bacillus siamensis

ncbi_submitter: Momota Potshangbam's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus siamensis


ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Chlamydia sp. 26-15

ncbi_submitter: Mahidol University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Chlamydiota;c__Chlamydiia;o__Chlamydiales;f__Chlamydiaceae;x__Chlamydia/Chlamydophila group;g__Chlamydia;x__unclassified Chlamydia;s__Chlamydia sp. 26-15


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mailhella sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain: Hospital de Sabadell; Barcelona; Catalonia

ncbi_isolation_source: gastric biopsy

ncbi_submitter: Facultat de Farmacia i Ciencies de l'Alimentacio; Universitat de Barcelona


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Victivallis lenta

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_submitter: Quadram Institutte

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Cryptobacteroides;s__Candidatus Cryptobacteroides faecigallinarum


ncbi_country: USA

ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_country: South Korea: Incheon

ncbi_organism_name: Flavobacterium crassostreae

ncbi_submitter: Korea University


ncbi_country: Mexico

ncbi_submitter: University of California at Davis


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola plebeius

ncbi_submitter: EMG


ncbi_assembly_name: Rumen uncultured genome RUG14046

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada

ncbi_isolation_source: brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention


ncbi_country: Germany

ncbi_isolation_source: lupine-based moromi fermentation

ncbi_organism_name: Chromohalobacter sp. TMW 2.2271

ncbi_submitter: Technische Universitaet Muenchen


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Weifang People's Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Denmark

ncbi_isolation_source: not known

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Malaysia

ncbi_isolation_source: Environment

ncbi_organism_name: Leptospira sarikeiensis

ncbi_submitter: INRS-Institut Armand-Frappier


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: France

ncbi_isolation_source: PACA; leaf or stem petiole

ncbi_organism_name: Xylella fastidiosa subsp. multiplex

ncbi_submitter: INRAE


ncbi_country: China: Qingdao

ncbi_isolation_source: Marine soil

ncbi_organism_name: Streptomyces sp. FXY-T5

ncbi_submitter: Qingdao University


ncbi_organism_name: Vibrio cholerae

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Instituto de Biotecnologia


ncbi_isolation_source: SWINE INTESTINE

ncbi_organism_name: Escherichia coli

ncbi_submitter: istituto zooprofilattico sperimentale della lombardia e dell'emilia romana


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Wisconsin Soil

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: Ohio State university


ncbi_organism_name: Cellvibrionales bacterium

ncbi_submitter: Institut de Ciencies del Mar


ncbi_isolation_source: vagina

ncbi_organism_name: Hoylesella buccalis DNF00985

ncbi_submitter: J. Craig Venter Institute


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Streptococcus agalactiae LADL-90-503

ncbi_submitter: IP


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: Hopital Henri Mondor APHP


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_country: USA: IA

ncbi_isolation_source: soil

ncbi_organism_name: Listeria fleischmannii

ncbi_submitter: Cornell University


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus H41109

ncbi_submitter: Broad Institute


ncbi_organism_name: Bacillus sp. FSL W7-1354

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL W7-1354


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-052-05_S3_C2

ncbi_submitter: IGS


ncbi_country: Canada: Calgary

ncbi_isolation_source: chemostat inoculated with river sediment

ncbi_organism_name: Thiobacillus sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_isolation_source: oral

ncbi_organism_name: Segatella salivae F0493

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Cellulosimicrobium sp. PMB13

ncbi_submitter: University of Plovdiv


ncbi_country: Canada: Suncor tailings pond 6

ncbi_isolation_source: suncor tailing pond 6 meters

ncbi_organism_name: Caldiserica bacterium UBA2182

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__unclassified Caldisericota;s__Caldiserica bacterium UBA2182


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Bangladesh Council of Scientific and Industrial Research (BCSIR)


ncbi_country: China: Yangzhou

ncbi_isolation_source: stray dog feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_country: USA: Tift Co. GA

ncbi_isolation_source: peanut blossom

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_isolation_source: Duck


ncbi_isolation_source: metagenome

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Alloclostridium;s__Candidatus Alloclostridium intestinigallinarum


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eggerthella sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing Agriculture University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malawi

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Japan:Ibaraki; Ibaraki-machi higashiibaraki-gun; Lake Hinuma

ncbi_isolation_source: lake surface water

ncbi_organism_name: Polynucleobacter sp. HIN10

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_country: Norway

ncbi_isolation_source: EFB infected honey bee larva

ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Goettingen Genomics Laboratory


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: USA: San Francisco; CA

ncbi_organism_name: Shigella sonnei

ncbi_submitter: California Department of Public Health


ncbi_isolation_source: coastal sediment

ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: UNIVERSITY OF VIENNA


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus intermedius

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Japan

ncbi_isolation_source: Infant feces

ncbi_organism_name: Bifidobacterium longum subsp. longum

ncbi_submitter: Korea University


ncbi_organism_name: Nakamurella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Phormidesmis sp.

ncbi_submitter: Rutgers University


ncbi_isolation_source: Snout ulcer

ncbi_organism_name: Tenacibaculum finnmarkense

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: Australia: Great Barrier Reef; Magnetic Island; Geoffrey Bay

ncbi_isolation_source: coral reef macroalgae biofilm

ncbi_organism_name: Moorena sp. SS36440bin_2

ncbi_submitter: James Cook University


ncbi_organism_name: Aeromonas sp. S15(2024)

ncbi_submitter: the Chinese University of Hong Kong


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroides fragilis

ncbi_submitter: BGI


ncbi_country: USA: Richmond; CA

ncbi_isolation_source: wastewater sludge anaerobic digester phosphite (DPO) enrichment

ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Escherichia coli

ncbi_submitter: College of Dairy Science, Kamdhenu University, Amreli


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Streptosporangium sp. NPDC020072

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: USA: California

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Southern California


ncbi_country: USA: Gainesville

ncbi_submitter: University of Florida


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Zhejiang University


ncbi_country: Laos

ncbi_submitter: J. Craig Venter Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Leptospirales;f__Leptospiraceae;g__Leptospira;s__Leptospira borgpetersenii;x__Leptospira borgpetersenii serovar Javanica;x__Leptospira borgpetersenii serovar Javanica str. UI 09931


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: blood

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_country: Australia: Great Barrier Reef

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: stool

ncbi_organism_name: Lachnoclostridium edouardi

ncbi_submitter: URMITE


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Avisuccinivibrio pullicola

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA: New York State

ncbi_isolation_source: Raspberries

ncbi_organism_name: Acetobacter sp. DsW_059

ncbi_submitter: Cornell University


ncbi_organism_name: Bacteroides xylanisolvens SD CC 1b

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides xylanisolvens;x__Bacteroides xylanisolvens SD CC 1b


ncbi_organism_name: Streptomyces mirabilis


ncbi_organism_name: Klebsiella huaxiensis

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_country: USA

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: Butyrivibrio sp.

ncbi_submitter: Washington University School of Medicine


ncbi_country: United Kingdom

ncbi_isolation_source: Wastewater

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: SC


ncbi_country: Netherlands

ncbi_isolation_source: Dairy starter

ncbi_submitter: Radboudumc

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Lactococcus;s__Lactococcus lactis;sb__Lactococcus lactis subsp. lactis;x__Lactococcus lactis subsp. lactis bv. diacetylactis


ncbi_country: South Korea: Daejeon

ncbi_isolation_source: gut

ncbi_organism_name: Luteimicrobium xylanilyticum

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology (KRIBB)


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: the seqafrica consortium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: USA: Georgia

ncbi_organism_name: Streptococcus pneumoniae GA13856

ncbi_submitter: Institute for Genome Sciences


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: uncultured Clostridia bacterium


ncbi_organism_name: Candidatus Avispirillum sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Avispirillum;x__unclassified Candidatus Avispirillum;s__Candidatus Avispirillum sp.


ncbi_organism_name: Stenotrophomonas pavanii

ncbi_submitter: Fujita Health University School of Medicine


ncbi_organism_name: Halanaerobiales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Citrobacter koseri

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Nocardiopsis alba

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces lavendofoliae

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Streptococcus sanguinis

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Christensenellaceae bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: University Hospital Basel


ncbi_organism_name: Limisphaerales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: uncultured Paludibacteraceae bacterium


ncbi_organism_name: Eshraghiella crossota


ncbi_organism_name: Flavobacterium longum

ncbi_submitter: Collection de l'Institut Pasteur


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Collinsella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured Methyloceanibacter sp.


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Betaproteobacteria bacterium


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: France: Brest

ncbi_organism_name: Vibrio crassostreae

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Russia: Saratov

ncbi_isolation_source: Saratov Oil Refinery

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: IBPM RAS


ncbi_assembly_name: N19-2759_reSEQ-long-read asse

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: EPFL


ncbi_organism_name: Pseudomonas sp. Marseille-Q0931

ncbi_submitter: Unite de Recherche sur les Maladies Infectieuses et Tropicales Emergentes (URMITE) CNRS, Faculte de Medecine, Universite de la Mediterranee, Marseille, France


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_isolation_source: Suspended Particulate Matter (SPM) from the Black Sea western gyre

ncbi_organism_name: Candidatus Desulfobacula maris

ncbi_submitter: Utrecht University


ncbi_country: Cote d Ivoire

ncbi_isolation_source: cassava fermentation

ncbi_organism_name: Weissella cibaria

ncbi_submitter: Brigham Young University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Germany

ncbi_isolation_source: Tissues

ncbi_organism_name: Staphylococcus aureus 12S01153

ncbi_submitter: Broad Institute


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Phreatobacteraceae bacterium

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: FL

ncbi_isolation_source: large intestine

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: Sun Yat-sen University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: New Zealand: Manawatu

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter hyointestinalis subsp. hyointestinalis

ncbi_submitter: Molecular Epidemiology and Public Health Laboratory


ncbi_organism_name: Capnocytophaga leadbetteri


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EBI


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: USA:New York City

ncbi_isolation_source: metal/plastic

ncbi_organism_name: Enterobacteriaceae bacterium UBA2068

ncbi_submitter: University of Queensland


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Faecalibacterium sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: USA: NC

ncbi_isolation_source: core

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: catheter tip

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Technology Sydney


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_submitter: China Agriculture University


ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: National Institute of Technology and Evaluation


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_assembly_name: Salmonella enterica CVM N45945 v1.0

ncbi_country: USA: MD

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson


ncbi_country: Germany: Jena

ncbi_isolation_source: Incubator

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Jena University Hospital


ncbi_country: Singapore: Jurong East

ncbi_isolation_source: waste water treatment plant

ncbi_organism_name: Candidatus Sumerlaeaceae bacterium

ncbi_submitter: Singapore Centre for Environmental Life Sciences Engineering

ncbi_taxonomy: d__Bacteria;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;o__Candidatus Sumerlaeales;f__Candidatus Sumerlaeaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;c__Candidatus Sumerlaeia;o__Candidatus Sumerlaeales;f__Candidatus Sumerlaeaceae;x__unclassified Candidatus Sumerlaeaceae;s__Candidatus Sumerlaeaceae bacterium


ncbi_country: USA: PA

ncbi_isolation_source: porcine pig jejunum

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Haemophilus parainfluenzae

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Italy

ncbi_isolation_source: blood

ncbi_organism_name: Listeria monocytogenes


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: USA: MI

ncbi_isolation_source: feces (Bos taurus)


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Enterococcus faecalis OG1RF

ncbi_submitter: Children's Hospital of Philadelphia


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Treponema sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Czech Republic: Moravia

ncbi_submitter: Palacky University Olomouc


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH