ncbi_country: USA: Cincinatti

ncbi_isolation_source: sputum or oropharyngeal

ncbi_submitter: Department of Infection Prevention and Control, Infectious Diseases Division, Cincinnati Children's Hospital Medical Center,


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Contig

ncbi_country: India

ncbi_genome_representation: full

ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington State University


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_organism_name: Stutzerimonas nitrititolerans


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Candidatus Calescamantes bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Calescibacteriota;x__unclassified Candidatus Calescamantes;s__Candidatus Calescamantes bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: United Kingdom:Scotland

ncbi_isolation_source: not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium str. DT104


gtdb_representative: t

ncbi_assembly_level: Complete Genome

ncbi_country: China: Sichuan

ncbi_organism_name: Apibacter sp. B3706

ncbi_submitter: China Agricultural University


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Eggerthellaceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas syringae pv. syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. syringae


ncbi_isolation_source: Faeces

ncbi_organism_name: Paramuribaculum intestinale

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Collinsella sp. CLA-AA-H167

ncbi_submitter: RWTH Aachen University Hospital


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Galway


ncbi_organism_name: Candidatus Elarobacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Urbana; Illinois

ncbi_isolation_source: metheanogenic bioreactor

ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: United Kingdom

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni


ncbi_organism_name: Bryobacteraceae bacterium


ncbi_country: USA: Crystal Geyser near Green River; Utah

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Infernicultor aquiphilus

ncbi_taxonomy: d__Bacteria;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Infernicultor;s__Candidatus Infernicultor aquiphilus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Atribacterota;c__Candidatus Phoenicimicrobiia;o__Candidatus Pheonicimicrobiales;f__Candidatus Phoenicimicrobiaceae;g__Candidatus Infernicultor;s__Candidatus Infernicultor aquiphilus


ncbi_country: USA: Texas

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_isolation_source: rhizosphere soil culture M59

ncbi_organism_name: Saccharothrix sp.

ncbi_submitter: Sun Yat-Sen University


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Treponema sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Rhizobacter sp.

ncbi_submitter: EPFL

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_country: South Korea: Pohang

ncbi_isolation_source: seawater and sand

ncbi_organism_name: Algoriphagus formosus

ncbi_refseq_category: reference genome

ncbi_submitter: Kyonggi University

ncbi_type_material_designation: assembly from type material


ncbi_country: China

ncbi_isolation_source: gut microbiota

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Shenzhen Puensum Genetech Institute


ncbi_country: Germany

ncbi_isolation_source: pasteurized milk

ncbi_organism_name: Bacillus mycoides

ncbi_submitter: Institute of Life Sciences and Technology


ncbi_organism_name: Pseudomonas sp. B1-22

ncbi_submitter: Hainan University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Oxford


ncbi_assembly_level: Chromosome

ncbi_organism_name: Brevundimonas diminuta

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: USA: Metropolitan Atlanta

ncbi_organism_name: Streptococcus pneumoniae GA11426

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Guangxi Medical University


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Pedosphaera sp.

ncbi_submitter: Tang lab


ncbi_country: USA: AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-469-F22

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Escherichia coli O26:H11

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Serratia marcescens

ncbi_submitter: Wellcome Sanger Institute


ncbi_isolation_source: sea water

ncbi_organism_name: uncultured Crocinitomix sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: Pacific Ocean: Chile-Peru Current Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Escherichia coli

ncbi_submitter: Labbmm Biomol Group


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Alexandria University


ncbi_submitter: CDC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O26:H11;x__Escherichia coli O26:H11 str. 2010C-4819


ncbi_country: Norway: Oslofjord Tunnel

ncbi_isolation_source: subsea tunnel biofilm collected in 2016; 2017; 2019 and 2020

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: Lund University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. 2333.5

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: South China Sea

ncbi_isolation_source: Synechococcus sp. YX04-3 co-culture from sea water

ncbi_organism_name: Synechococcus sp. YX04-3

ncbi_submitter: Synechococcus sp. YX04-3


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: uncultured Myxococcia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;c__Myxococcia;x__environmental samples;s__uncultured Myxococcia bacterium


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Sumerlaeota;x__environmental samples;s__uncultured Candidatus Sumerlaeota bacterium


ncbi_organism_name: Pyrinomonadaceae bacterium

ncbi_submitter: Center for Genome Regulation (CRG)


ncbi_organism_name: Coprococcus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Rochester School of Medicine & Dentistry


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Streptomyces sp. NPDC058603

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Collinsella stercoris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Veillonella parvula


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Center of Infectious and Parasitic Diseases


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Erysipelotrichaceae bacterium

ncbi_submitter: UNIVERSIDAD AUTONOMA CHAPINGO


ncbi_submitter: Instituto Nacional de Salud Publica


ncbi_isolation_source: stool

ncbi_organism_name: Weissella confusa

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Seattle

ncbi_organism_name: Mycobacterium sherrisii

ncbi_submitter: UW


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Acetobacteraceae bacterium

ncbi_submitter: National University of Singapore


ncbi_country: Uruguay: Salto

ncbi_isolation_source: urine

ncbi_organism_name: Leptospira noguchii

ncbi_submitter: INRS - Institut Armand-Frappier


ncbi_assembly_name: Rumen uncultured genome RUG13004

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Jinhua

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter sp. JH18

ncbi_submitter: Jinhua Central Hospital


ncbi_country: Saudi Arabia

ncbi_isolation_source: Dammam

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nebraska Medical Center


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: human oral metagenome

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: EMG


ncbi_country: Pacific Ocean: North Pacific Ocean

ncbi_organism_name: Acidiferrobacteraceae bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Italy: Venice Lagoon

ncbi_isolation_source: marine sediment

ncbi_organism_name: Desulfosarcina sp.

ncbi_submitter: National Institute of Oceanography and Applied Geophysics - OGS


ncbi_organism_name: Muribaculum intestinale


ncbi_organism_name: Adlercreutzia sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: Acinetobacter sp. SAAs470

ncbi_submitter: University of Technology Sydney


ncbi_country: Iceland: North of Kolbeinsey ridge

ncbi_isolation_source: Submarine hydrothermal system

ncbi_organism_name: Thermotoga sp. KOL6

ncbi_submitter: University of Alberta


ncbi_country: USA: PA

ncbi_isolation_source: intestine porcine (Sus domesticus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Clostridium beijerinckii

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Staphylococcus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_submitter: INSTITUT PASTEUR


ncbi_country: China: Shanghai City

ncbi_submitter: Yangzhou University


ncbi_country: Hong Kong:Wong Wan Chau

ncbi_organism_name: Roseobacter sp. HKCCD6571

ncbi_submitter: Chinese University of Hong Kong


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Verrucomicrobiales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: South Korea

ncbi_isolation_source: subgingival plaque

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Aarhus University Hospital, Denmark


ncbi_organism_name: Streptomyces anulatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_assembly_name: freshwater MAG --- Loc081215-9m_bin-2338

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_assembly_name: freshwater MAG --- AM4_bin-024

ncbi_organism_name: uncultured Phycisphaerales bacterium


ncbi_country: United Kingdom: Scotland; Isle of May

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Streptomyces roseoverticillatus


ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli K-12;x__Escherichia coli str. K-12 substr. MG1655


ncbi_country: China: Henan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


gtdb_type_species_of_genus: t

ncbi_country: China: Inner Mongolia; Lake Shangmatala

ncbi_organism_name: Aquisalibacillus elongatus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coprobacillus sp.

ncbi_submitter: EMG


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: sputum

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Chloracidobacterium sp.

ncbi_submitter: EPFL


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Azonexus sp.

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: USA: OH

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: BGI


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;o__Candidatus Obscuribacterales;x__environmental samples;s__uncultured Candidatus Obscuribacterales bacterium


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Russian Research Anti-Plague Institute "Microbe"


ncbi_country: South Korea: Hongsung

ncbi_isolation_source: Marine sand

ncbi_organism_name: Sulfitobacter sabulilitoris

ncbi_submitter: Sungkyunkwan University


ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Huashan Hospital, Fudan University


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: Roast Chicken

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Dysgonamonadaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_country: China: Sichuan

ncbi_isolation_source: pit mud

ncbi_organism_name: Caproiciproducens sp. NJN-50

ncbi_submitter: Biogas Institute of Ministry of Agriculture


ncbi_organism_name: Tissierellaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Chile: Comau Fjord

ncbi_isolation_source: water column

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Universidad Andres Bello


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Brazil: southwest Rio Grande do Sul

ncbi_isolation_source: root nodule

ncbi_organism_name: Bradyrhizobium sp. NAS96.2

ncbi_submitter: UFRGS


ncbi_country: Brazil

ncbi_isolation_source: non-migratory seabirds

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: LAPOA-Federal University of Paraiba (UFPB)


ncbi_country: China: Inner Mongolia

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Canada: Alberta

ncbi_isolation_source: wastewater

ncbi_submitter: University of Alberta


ncbi_isolation_source: pharyngeal tonsil

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: University of Basel


ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_country: Taiwan

ncbi_isolation_source: Human

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Litchfield


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Polaribacter sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology


ncbi_country: France

ncbi_organism_name: Shigella flexneri 2a

ncbi_submitter: U.S. Food and Drug Administration


ncbi_country: Malaysia: Terengganu

ncbi_isolation_source: Aquaculture pond water

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Monash University


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.1 filter

ncbi_organism_name: Bdellovibrionales bacterium GWC1_52_8

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Melissococcus plutonius

ncbi_submitter: Michigan State University


ncbi_organism_name: Klebsiella aerogenes

ncbi_submitter: University of Wisconsin-Madison


ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: DS-I Africa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_organism_name: Klebsiella pneumoniae subsp. pneumoniae

ncbi_submitter: Academy of Military Medical Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella pneumoniae;sb__Klebsiella pneumoniae subsp. pneumoniae


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Veterinary Sciences Brno


ncbi_organism_name: uncultured Desulfohalobiaceae bacterium


ncbi_organism_name: Candidatus Chromulinivoraceae bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy: d__Bacteria;p__;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Candidatus Babelota;c__Candidatus Babeliae;o__Candidatus Babeliales;f__Candidatus Chromulinivoraceae;x__unclassified Candidatus Chromulinivoraceae;s__Candidatus Chromulinivoraceae bacterium


ncbi_organism_name: Streptomyces auratus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Acetivibrionales bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: First Affiliated Hospital of Nanchang University, Nanchang University, Nanchang


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Collaborative Research Centre AquaDiva

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Micromonospora carbonacea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Hyphomicrobium sp.


ncbi_country: China: Beijing

ncbi_isolation_source: lab-scale wastewater treatment bioreactor

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Peking University


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_name: Chelatococcus sp. WSC3-1

ncbi_isolation_source: Sludge ENVO:00002044

ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research


ncbi_country: Brazil: Rio Grande do Sul

ncbi_isolation_source: laying hens

ncbi_submitter: Universidade de Passo Fundo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Gallinarum


ncbi_organism_name: Aquicoccus sp. G2-2

ncbi_submitter: Chung-Ang university


ncbi_country: Malaysia

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University Sultan Zainal Abidin


ncbi_isolation_source: wheat

ncbi_submitter: University of Arizona

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae pv. atrofaciens;x__Pseudomonas syringae pv. atrofaciens str. DSM 50255


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Enorma sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: China: East China Sea

ncbi_isolation_source: seawater

ncbi_organism_name: Phaeobacter gallaeciensis

ncbi_submitter: Shantou University


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom: London

ncbi_organism_name: Aggregatibacter aphrophilus

ncbi_submitter: Menzies School of Health Research


ncbi_organism_name: Enterococcus malodoratus

ncbi_submitter: SC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_isolation_source: soil

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Guangdong Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: North Sea

ncbi_isolation_source: Subsurface seawater

ncbi_organism_name: Rhodobacterales bacterium UBA7416

ncbi_submitter: University of Queensland


ncbi_organism_name: Listeria welshimeri


ncbi_country: Italy

ncbi_organism_name: Vibrio aestuarianus

ncbi_submitter: IFREMER


ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Verrucomicrobiia bacterium

ncbi_submitter: concordia university


ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Oscillibacter sp.

ncbi_submitter: National Key Laboratory of Agricultural Microbiology


ncbi_country: USA: Florida

ncbi_isolation_source: leaf from field isolate

ncbi_organism_name: Xanthomonas perforans

ncbi_submitter: University of Florida


ncbi_country: USA

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_country: French Polynesia: Moorea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Scripps Institution of Oceanography


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: infant feces

ncbi_organism_name: Streptococcus mitis

ncbi_submitter: University of California, Berkeley


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Public Health Laboratory


ncbi_organism_name: Rhizobium mongolense

ncbi_submitter: The Institute of Microbiology of the Chinese Academy of Sciences


ncbi_country: Philippines: Negros Occidental

ncbi_isolation_source: Penaeus vannamei

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Philippine Genome Center


ncbi_organism_name: bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: China

ncbi_isolation_source: nasal

ncbi_organism_name: Streptococcus suis

ncbi_submitter: China Agriculture University


ncbi_country: Uganda: Bwera General Hospital

ncbi_isolation_source: Pus swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: Makerere University


ncbi_organism_name: uncultured Leptotrichia sp.

ncbi_submitter: EMG


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Christian Medical College


ncbi_country: France: Charenton le Pont

ncbi_isolation_source: urine

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: Rectal swab

ncbi_organism_name: Cronobacter sakazakii

ncbi_submitter: Nanjing Municipal Center for Disease Control and Prevention


ncbi_country: Germany: Rhineland-Palatinate

ncbi_isolation_source: swab sample of the fossa glandis

ncbi_organism_name: Taylorella equigenitalis

ncbi_submitter: Friedrich-Loeffler-Institut


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_isolation_source: abscess l cheek

ncbi_organism_name: Actinomyces sp. HMSC075C01

ncbi_submitter: The Genome Institute at Washington University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Hospital Universitary 12 de octubre


ncbi_organism_name: Flagellimonas aurea

ncbi_submitter: Xiamen University


ncbi_country: USA: Colorado;Grand_Junction

ncbi_isolation_source: soil adjacent to human cadaver hip

ncbi_organism_name: Jiangellaceae bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Changhai Hospital Affiliated to Naval Military Medical University


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Paenibacillus hubeiensis

ncbi_submitter: Yichun University


ncbi_submitter: City University of Hong Kong


ncbi_organism_name: Viridibacterium curvum

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Elusimicrobium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Switzerland

ncbi_organism_name: Pseudomonas chlororaphis

ncbi_submitter: ETH Zurich


ncbi_country: USA: Little Rock; AR

ncbi_isolation_source: blood

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_country: Antarctica

ncbi_isolation_source: trachea

ncbi_organism_name: Psychrobacter sp. I-STPA10

ncbi_submitter: Universidad Andres Bello


ncbi_country: USA: Pacific Northwest

ncbi_isolation_source: blood from patient with bacteremia

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_organism_name: Shigella flexneri

ncbi_submitter: RIVM - National Institute for Public Health and the Environment


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Prevotellaceae bacterium UBA4372

ncbi_submitter: University of Queensland


ncbi_country: Canada: Waterloo

ncbi_isolation_source: water from a groundwater well adjacent to an active municipal landfill in Southern Ontario

ncbi_organism_name: Salinivirgaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_isolation_source: human gut

ncbi_organism_name: Faecalibacterium prausnitzii

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: Brazil

ncbi_submitter: LNCC


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_country: Japan

ncbi_isolation_source: feces; 1 single-cell amplified by MDA combined with human gut metagenome reads

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: bioBiome, Inc.


ncbi_organism_name: Bordetella bronchiseptica E014

ncbi_submitter: JCVI


ncbi_organism_name: Yoonia sp. 67

ncbi_submitter: Shenzhen Research Institute, The Chinese University of Hong Kong


ncbi_organism_name: Terracidiphilus sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Lancefieldella rimae

ncbi_submitter: EMG


ncbi_organism_name: Stenotrophomonas acidaminiphila


ncbi_organism_name: Aeribacillus sp. FSL K6-2848

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Aeribacillus;x__unclassified Aeribacillus;s__Aeribacillus sp. FSL K6-2848


ncbi_country: Italy: Vercelli

ncbi_isolation_source: paddy soil amended with rice straw

ncbi_organism_name: Ignavibacteria bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Ares Genetics


ncbi_country: Belgium: Ghent

ncbi_isolation_source: plant

ncbi_organism_name: Pedobacter foliorum

ncbi_submitter: Ghent University


ncbi_country: Singapore

ncbi_isolation_source: urine

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Nanyang Technological University


ncbi_country: USA: Alaska

ncbi_isolation_source: tundra soil

ncbi_organism_name: Bradyrhizobium sp.

ncbi_submitter: University of Oklahoma


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Aliarcobacter sp.

ncbi_submitter: South China Agricultural University


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Environmental Microbiology OMICS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_organism_name: Staphylococcus cohnii

ncbi_submitter: Jilin Agricultural Science and Technology University


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Bacilli bacterium


ncbi_organism_name: Pelagibacteraceae bacterium

ncbi_submitter: University of Southern California


ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Chiang Mai University


ncbi_organism_name: uncultured Butyrivibrio sp.


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: South China Agricultural Univercity


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: uncultured delta proteobacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_organism_name: Phascolarctobacterium faecium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Istituto Superiore di Sanita


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Alliance of pathogen surveillance and innovations - INDIA


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Fujian medical university union hospital


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Chulalongkorn University


ncbi_organism_name: Faecalibacterium prausnitzii


ncbi_isolation_source: cold seep

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_country: Israel: Achziv Nature Marine Reserve

ncbi_isolation_source: coastal seawater

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: University of Haifa


ncbi_assembly_name: Rumen uncultured genome RUG632

ncbi_organism_name: uncultured Lentisphaerota bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Lentisphaerota;x__environmental samples;s__uncultured Lentisphaerota bacterium


ncbi_country: China: Dabaoshan Pyrite-Copper Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolate: Clostridium neonatale M84

ncbi_organism_name: Clostridium neonatale

ncbi_strain_identifiers: Clostridium neonatale M84

ncbi_submitter: universite paris cite


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Lithuania: Vilnius

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Fusobacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_organism_name: Zoogloeaceae bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_country: Russia: Yessentuki

ncbi_isolation_source: subsurface water

ncbi_organism_name: Humidesulfovibrio sp.

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D8_bin-127

ncbi_isolation_source: lake water

ncbi_submitter: BILS


ncbi_country: Spain: Asturias

ncbi_isolation_source: meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Oviedo


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Waterloo

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_isolation_source: NEUS_B leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Thiomonas arsenitoxydans


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Boston; MA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus M1082

ncbi_submitter: Broad Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Veillonella magna

ncbi_submitter: EMG


ncbi_organism_name: Gordonia amicalis

ncbi_strain_identifiers: IEGM 1279

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_isolation_source: Mouse faeces

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Tartu


ncbi_country: France

ncbi_isolation_source: Seed

ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: INRAE


ncbi_organism_name: Clostridium sp. AF37-5

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EBI


ncbi_isolation_source: soil

ncbi_organism_name: Pseudomonas fluorescens

ncbi_submitter: JOHN INNES CENTRE, NORWICH, UK.


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Serbia: Besenovo

ncbi_organism_name: Xanthomonas arboricola pv. pruni

ncbi_submitter: University of Exeter


ncbi_organism_name: Klebsiella grimontii

ncbi_submitter: University of Basel


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Campylobacter coli

ncbi_submitter: Huzhou Center for Disease Control and Prevention


ncbi_country: China

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: rumen

ncbi_organism_name: Bacteroidales bacterium UBA2914

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium UBA2914


ncbi_assembly_name: freshwater MAG --- Loc080925-5m_bin-1029

ncbi_organism_name: uncultured Verrucomicrobiota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__environmental samples;s__uncultured Verrucomicrobiota bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Microbacterium sp. MMO-32

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: EPFL


ncbi_country: USA: Tennessee

ncbi_isolation_source: root

ncbi_organism_name: Acidovorax sp. CF316

ncbi_submitter: Oak Ridge National Lab


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Technical university of Denmark


ncbi_country: Pakistan

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Buttiauxella sp. BIGb0552

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Xanthomonas euvesicatoria pv. citrumelonis

ncbi_submitter: nivip


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: US Food and Drug Administration


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Aquimarina sp. TRL1

ncbi_submitter: University of Tasmania


ncbi_assembly_name: Rumen uncultured genome RUG10347

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_submitter: EMG


ncbi_organism_name: Cognatilysobacter bugurensis

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Candidatus Kapaibacterium sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy: d__Bacteria;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Candidatus Kapaibacteriota;c__Candidatus Kapaibacteriia;o__Candidatus Kapaibacteriales;f__Candidatus Kapaibacteriaceae;g__Candidatus Kapaibacterium;x__unclassified Candidatus Kapaibacterium;s__Candidatus Kapaibacterium sp.


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Kribbella sp. NPDC049584

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Australia: WA; Badgingarra

ncbi_organism_name: Mesorhizobium sp. B2-1-9

ncbi_submitter: Curtin University


ncbi_country: USA: IA

ncbi_organism_name: Bacillus pseudomycoides

ncbi_submitter: UNC Chapel Hill


ncbi_country: USA: Pittsburgh

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Polaribacter sp.

ncbi_submitter: Xiamen University


ncbi_isolation_source: Leg

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Sweden: Weibullsholm

ncbi_isolation_source: root nodule

ncbi_organism_name: Sinorhizobium meliloti

ncbi_submitter: University of Minneosta


ncbi_country: USA

ncbi_isolation_source: NEUS_F2 leachate from a leachate well at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Japan: Saga

ncbi_organism_name: Pseudomonas syringae pv. actinidiae

ncbi_submitter: National Agriculture and Food Research Organization (NARO)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae;x__Pseudomonas syringae group pathovars incertae sedis;x__Pseudomonas syringae pv. actinidiae


ncbi_organism_name: Bradyrhizobium genomosp. I (2014)

ncbi_strain_identifiers: CCBAU 43298

ncbi_submitter: China Agricultural University


ncbi_country: Iraq: Ibn Sina

ncbi_isolation_source: wound

ncbi_organism_name: Acinetobacter baumannii IS-116

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: Japan

ncbi_isolation_source: river water

ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Candidatus Cloacimonas sp.

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__Candidatus Cloacimonadaceae;g__Candidatus Cloacimonas;x__unclassified Candidatus Cloacimonas;s__Candidatus Cloacimonas sp.


ncbi_country: Poland

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: KNOW (Leading National Research Centre) Scientific Consortium “Healthy Animal – Safe Food”


ncbi_country: USA: Lake Erie

ncbi_isolation_source: lake water

ncbi_organism_name: Microcystis sp. LE19-131.1A

ncbi_submitter: University of Michigan


ncbi_organism_name: Bilophila wadsworthia

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: BRAC University


ncbi_country: Ethiopia: Oromia; North Shewa

ncbi_submitter: Cook Lab - University of California at Davis


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Washington


ncbi_country: Denmark

ncbi_isolation_source: stool sample

ncbi_organism_name: Escherichia coli C58_11

ncbi_submitter: IGS


ncbi_country: Iran: Tehran

ncbi_isolation_source: groundwater

ncbi_organism_name: Geothrix sp.

ncbi_submitter: University of Tehran


ncbi_organism_name: Mucilaginibacter sp.

ncbi_submitter: Zhejiang University


ncbi_organism_name: Azospirillum formosense

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Brevibacterium casei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomicrobium piriforme

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)


ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 3 / C; 5m depth; 0.2 filter

ncbi_organism_name: Geobacteraceae bacterium GWC2_53_11

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Nepal

ncbi_isolation_source: blood

ncbi_submitter: Sheba medical center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi A


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Wellcome Sanger Institute


ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Nagoya University


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Muribaculum sp.


ncbi_country: China: Shanghai

ncbi_isolation_source: soil sample from China

ncbi_organism_name: Sporolactobacillus terrae HKM-1

ncbi_submitter: Shanghai Jiao Tong University


ncbi_organism_name: Candidatus Onthoplasma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Christensenellales;f__Christensenellaceae;x__Christensenellaceae incertae sedis;g__Candidatus Onthoplasma;x__unclassified Candidatus Onthoplasma;s__Candidatus Onthoplasma sp.


ncbi_organism_name: Lonsdalea quercina

ncbi_submitter: Colorado State University


ncbi_organism_name: Enterobacter quasiroggenkampii

ncbi_submitter: National Health Research Institutes


ncbi_organism_name: Mesorhizobium sp. 2RAF45

ncbi_submitter: CCRP


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces olivaceus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Parapedobacter sp. GCM10030251

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: uncultured Thermoleophilia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: Canada: Liard River

ncbi_isolation_source: hot spring sediment

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: University of British Columbia


ncbi_organism_name: Limnochordia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Peptococcaceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Candidatus Nanosyncoccaceae bacterium

ncbi_taxonomy: d__Bacteria;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Nanosyncoccalia;o__Candidatus Nanosyncoccales;f__Candidatus Nanosyncoccaceae;x__unclassified Candidatus Nanosyncoccaceae;s__Candidatus Nanosyncoccaceae bacterium


ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: Salamanca

ncbi_isolation_source: nodule

ncbi_organism_name: Rhizobium laguerreae

ncbi_submitter: University of Salamanca


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Candidatus Actinomarina sp.

ncbi_submitter: Max Planck Institute for Marine Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;x__Candidatus Actinomarinidae;o__Candidatus Actinomarinales;x__Candidatus Actinomarineae;f__Candidatus Actinomarinaceae;g__Candidatus Actinomarina;x__environmental samples;s__uncultured Candidatus Actinomarina sp.


ncbi_country: Germany

ncbi_isolation_source: bioscrubber

ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Stuttgart


ncbi_country: Russia: Moscow

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: SRCAMB


ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Shanghai municipal center for disease control and prevention


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Agathobacter sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: China: Esturies of South China

ncbi_isolation_source: estuarine open water surface layer

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: South China Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_isolation_source: human skin

ncbi_organism_name: uncultured Hyphomicrobiales bacterium

ncbi_submitter: NIH/NHGRI


ncbi_organism_name: Capnocytophaga leadbetteri

ncbi_submitter: The Forsyth Institute


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 13

ncbi_submitter: Lebanese American University


ncbi_organism_name: Microcystis ichthyoblabe FBCC-A1114

ncbi_submitter: The Catholic University of Korea


ncbi_isolation_source: sputum

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: JCVI


ncbi_country: USA

ncbi_isolation_source: roots

ncbi_organism_name: Streptomyces sp. SID4982

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Eubacterium plexicaudatum

ncbi_submitter: EMG


ncbi_submitter: Proteon Pharmaceuticals


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_organism_name: Listeria welshimeri

ncbi_submitter: Meeske Lab - University of Washington


ncbi_organism_name: Lysinibacillus sp. C5.1

ncbi_submitter: Shanghai Institute of Quality Supervision and Inspection Technology


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: biological product [ENVO:02000043]

ncbi_organism_name: Bacteroides cellulosilyticus DSM 14838

ncbi_submitter: Washington University Genome Sequencing Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Bacteroides;s__Bacteroides cellulosilyticus;x__Bacteroides cellulosilyticus DSM 14838


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Russia:Cape Chukochii; East Siberian Sea

ncbi_isolation_source: permafrost sediment

ncbi_organism_name: Acidimicrobiia bacterium

ncbi_submitter: Princeton University


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Pseudomonas lini

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_country: Canada

ncbi_organism_name: Escherichia coli

ncbi_submitter: Public Health Agency of Canada


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Raoultella ornithinolytica


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Lithuanian University of Health Sciences


ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_country: Iran: Esfhan

ncbi_isolation_source: Chest tube

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pasteur Institute of Iran


ncbi_country: Italy

ncbi_isolation_source: smoked salmon

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Chengdu

ncbi_isolation_source: BALs

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: COPD W6a

ncbi_submitter: Chengdu University


ncbi_country: Australia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Monash University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Mycoplasma sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: freshwater surface (50 cm depth)

ncbi_organism_name: Microcystis sp. M049S1

ncbi_submitter: Universite de Montreal


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_submitter: Food and Water Safety Consortium


ncbi_country: Thailand: Lat Krabang

ncbi_isolation_source: fresh seafood sold at markets and supermarkets located in Bangkok; Thailand

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: BIOTEC


ncbi_organism_name: Sporosarcina thermotolerans


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: [Eubacterium] sulci

ncbi_submitter: EMG


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at 16ft depth; 0.1 micron filter at time point B

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Wolfeibacteriota;s__Candidatus Wolfebacteria bacterium RIFOXYB1_FULL_54_12


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Peking University


ncbi_organism_name: uncultured Parabacteroides sp.


ncbi_organism_name: Lactococcus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: Yangzhou university


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Sedimenticola sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: newborn fecal sample

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: University of Siena


ncbi_country: United Kingdom: Aberystwyth

ncbi_isolation_source: throat

ncbi_organism_name: Fusobacterium necrophorum

ncbi_submitter: Cardiff Metropolitan University


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Tanzania

ncbi_submitter: washington state university


ncbi_country: China: Guangdong

ncbi_isolation_source: cloacal swab

ncbi_submitter: South China Agricultural University


ncbi_country: Mexico: Michoacan

ncbi_isolation_source: soil

ncbi_organism_name: Micrococcus luteus

ncbi_submitter: Escuela Nacional de Ciencias Biologicas-IPN


ncbi_country: China: Hangzhou

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Sir Run Run Shaw Hospital, Zhejiang University School of Medicine


ncbi_country: USA

ncbi_isolation_source: surface swab

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: United Kingdom: University of Surrey; Guildford

ncbi_organism_name: Candidatus Phocaeicola merdigallinarum

ncbi_submitter: Quadram Institutte


ncbi_country: China: Yangzhou

ncbi_isolation_source: water from a porcine slaughterhouse

ncbi_organism_name: Klebsiella sp. TFW1

ncbi_submitter: YangZhou university


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: University of Southern California


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: EMG


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Bacteroides caccae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Ruminococcus bromii

ncbi_submitter: University of Queensland


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterococcus gallinarum


ncbi_country: Germany: Munich

ncbi_organism_name: Yersinia enterocolitica subsp. palearctica

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Chicago

ncbi_isolation_source: fecal sample

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: University of Chicago


ncbi_country: Belize: Mesoamerican Barrier Reef; Blue Ground

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: Stony Brook University


ncbi_country: Haiti

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae HC-7A1

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Listeria cossartiae subsp. cayugensis

ncbi_submitter: University of Tennessee

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cayugensis


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Nepal: Himalayas

ncbi_isolation_source: alpine soil near a hot spring

ncbi_organism_name: Streptomyces sp. MBT53

ncbi_submitter: Institute of Biology, Leiden University


ncbi_country: Germany

ncbi_isolation_source: Vaginal-rectal

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Novartis Vaccines


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Falkowiibacteriota;s__Candidatus Falkowbacteria bacterium UBA917


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Tissue

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: AGUASCALIENTES STATE LABORATORY LESP


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_country: Iran: Caspian sea near Balbosar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: University of Zurich


ncbi_country: USA: Texas

ncbi_isolation_source: Endocarditis

ncbi_organism_name: Streptococcus gordonii

ncbi_submitter: The University of Texas at Dallas


ncbi_isolation_source: carious dentine

ncbi_organism_name: Streptococcus mutans ATCC 25175

ncbi_submitter: Institute of Bioprocess and Biosystems Engineering


ncbi_country: USA: Missouri

ncbi_isolation_source: soil from timothy field

ncbi_organism_name: Kitasatospora aureofaciens

ncbi_strain_identifiers: NRRL B-2183

ncbi_submitter: University of Illinois


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Streptomyces tendae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Candidatus Korobacteraceae bacterium

ncbi_submitter: The University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;x__unclassified Candidatus Korobacteraceae;s__Candidatus Korobacteraceae bacterium


ncbi_organism_name: Catenibacterium faecis

ncbi_submitter: UIUC


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Kitasatospora sp. NPDC087314


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: uncultured Actinomycetes bacterium


ncbi_organism_name: Flavihumibacter sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Nocardioides sp. GXQ0305

ncbi_submitter: Guangxi Minzu University


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Veterinary Medicine Vienna


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_submitter: UTsouthwestern Medical Center


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: China: Shuikoushan Lead-Zinc Mine; Hunan Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Anhui; Tongling

ncbi_isolation_source: sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Verrucomicrobia bacterium UBA1100

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium UBA1100


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: USA:Madison; Wisconsin

ncbi_isolation_source: activated sludge from EBPR Bioreactor

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Streptomyces sp. NPDC086669

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Desulfobacterales bacterium


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Stutzerimonas kunmingensis


ncbi_organism_name: Morganella morganii

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Monash University


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Faecalibacterium sp.

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: Saliva

ncbi_organism_name: Metamycoplasma salivarium

ncbi_submitter: SC


ncbi_organism_name: Minisyncoccia bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;x__unclassified Minisyncoccia;s__Minisyncoccia bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Treponema sp.


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Enterococcus hirae

ncbi_submitter: Massachusetts Institute of Technology


ncbi_country: Italy

ncbi_isolation_source: vegetables

ncbi_organism_name: Aliarcobacter butzleri

ncbi_submitter: Institute of Sciences of Food Production (ISPA)


ncbi_country: China

ncbi_isolation_source: Chinese fermented milk

ncbi_organism_name: Streptococcus thermophilus

ncbi_submitter: harbin institute of technology


ncbi_isolation_source: microbes were collected at JL-Dive96-S01

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering, Chinese Academy of Sciences


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Escherichia coli

ncbi_submitter: JSS Academy of Higher Education & Research


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Propionibacteriales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Taiwan: Xinbei

ncbi_isolation_source: activated sludge from Linkou wastewater treatment plant

ncbi_organism_name: Nitrospira sp. LK70

ncbi_submitter: The University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG10596

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Mitsuokella multacida


ncbi_organism_name: Leclercia adecarboxylata

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: Dorea longicatena

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: nasal swab

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Laboratoire de sante publique du Quebec


ncbi_organism_name: Gemmatimonadaceae bacterium

ncbi_submitter: Rutgers University


ncbi_country: South Korea: Pocheon Province

ncbi_isolation_source: ginseng field

ncbi_organism_name: Neobacillus pocheonensis

ncbi_submitter: Chung-Ang university


ncbi_country: USA

ncbi_isolation_source: laboratory

ncbi_organism_name: Escherichia coli K-12

ncbi_submitter: New England Biolabs


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: MPIPZ


ncbi_isolate: metabat2_pooled_metaflye.1636 MAG

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_strain_identifiers: metabat2_pooled_metaflye.1636 MAG

ncbi_submitter: the roslin institute (university of edinburgh)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Phocaeicola sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_assembly_name: Rumen uncultured genome RUG13920


ncbi_country: Brazil: Sao Paulo

ncbi_submitter: Instituto Adolfo Lutz

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bacteroidales bacterium


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Portland State University


ncbi_assembly_name: freshwater MAG --- Loc090402-7m_bin-1047

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Flavobacteriales bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Flavobacteriia;o__Flavobacteriales;x__environmental samples;s__uncultured Flavobacteriales bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Candidatus Beckwithbacteria bacterium

ncbi_submitter: University of Calgary

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Beckwithiibacteriota;x__unclassified Candidatus Beckwithbacteria;s__Candidatus Beckwithbacteria bacterium


ncbi_organism_name: Escherichia coli

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium sp.

ncbi_submitter: Universidad de Leon (Spain)


ncbi_country: China: Zhejiang

ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: The Second Affiliated Hospital Zhejiang University School of Medicine


ncbi_isolation_source: Caecum

ncbi_organism_name: Paramuribaculum intestinale


ncbi_assembly_name: IMG-taxon 2654588149 annotated assembly

ncbi_organism_name: Halomonas caseinilytica

ncbi_strain_identifiers: ALO Sharm

ncbi_submitter: DOE - JOINT GENOME INSTITUTE

ncbi_type_material_designation: assembly from heterotypic synonym type material


ncbi_country: USA: VA

ncbi_isolation_source: ATCC strain

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center


ncbi_isolate: AOP42_A2_surf _bin _8

ncbi_organism_name: Lactococcus lactis

ncbi_strain_identifiers: AOP42_A2_surf _bin _8

ncbi_submitter: Genoscope


ncbi_organism_name: Bacillus atrophaeus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Victivallaceae bacterium

ncbi_submitter: University of Waterloo


ncbi_country: Germany

ncbi_organism_name: Chlamydia psittaci C19/98

ncbi_submitter: University of Maryland School of Medicine


ncbi_isolation_source: Surface sediment of the South China Sea

ncbi_organism_name: Bacillus australimaris

ncbi_submitter: The Third Institute of Oceanography, Key Laboratory of Marine Biogenetic Resources


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: United Kingdom:England

ncbi_organism_name: Serratia marcescens

ncbi_submitter: SC


ncbi_organism_name: Streptomyces sp. NPDC046237

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Corynebacterium sp. KPL4015

ncbi_submitter: Baylor College of Medicine


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Candidatus Peribacter sp.

ncbi_submitter: The University of Melbourne

ncbi_taxonomy: d__Bacteria;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;f__;g__Candidatus Peribacter;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;o__Candidatus Peribacterales;x__Candidatus Peribacteraceae;g__Candidatus Peribacter;x__unclassified Candidatus Peribacter;s__Candidatus Peribacter sp.


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Xiamen University


ncbi_isolation_source: Faeces

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Candidatus Altimarinota bacterium

ncbi_submitter: Rutgers University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;p__Candidatus Altimarinota;x__unclassified Candidatus Altimarinota;s__Candidatus Altimarinota bacterium


ncbi_country: China: South China Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Mycolicibacterium sediminis

ncbi_submitter: Uppsala University


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: Cupriavidus alkaliphilus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: EMG


ncbi_country: Czech Republic

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CEITEC VFU


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus felis

ncbi_submitter: University of Melbourne


ncbi_organism_name: Muribaculaceae bacterium


ncbi_organism_name: uncultured Acetatifactor sp.


ncbi_country: China

ncbi_isolation_source: respiratory sample

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Zhujiang Hospital, Southern Medical University


ncbi_country: Canada: Quebec

ncbi_isolation_source: Human

ncbi_submitter: Laboratoire de sante publique du Quebec

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg


ncbi_isolation_source: Proximal colon


ncbi_country: United Kingdom

ncbi_isolation_source: Environmental

ncbi_organism_name: Legionella pneumophila


ncbi_country: China: Taihu Lake

ncbi_isolation_source: Taihu Lake

ncbi_organism_name: Sphingopyxis sp. YF1

ncbi_submitter: Xiangya School of Public Health, Central South University


ncbi_country: Thailand: Loei

ncbi_isolation_source: food

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Ministry of Public Health-Thailand


ncbi_country: China: Guangdong; Fankou

ncbi_isolation_source: sediment

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Prevotella nigrescens


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_organism_name: Natronocella acetinitrilica

ncbi_strain_identifiers: ANL 6-2


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: Delftia acidovorans

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Central Texas Vetrans Healthcare system


ncbi_isolation_source: Slaughterhouse-environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Tamazight Cherifi's shared submissions


ncbi_isolation_source: human saliva metagenome

ncbi_organism_name: Rothia aeria

ncbi_submitter: Antimicrobial Resistance Research Center, National Institute of Infectious Diseases


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_submitter: Teesside University


ncbi_organism_name: Wolbachia endosymbiont of Tettigetta isshikii

ncbi_strain_identifiers: wTis

ncbi_submitter: Northwest A&F University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_submitter: Xinjiang Agriculture University


ncbi_organism_name: Achromobacter dolens

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Waltera sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Streptomyces sp. NPDC047725

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: uncultured Coriobacteriales bacterium

ncbi_submitter: EMG


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Second Affiliated Hospital of Anhui Medical University


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Fidelibacterota bacterium UBA2129

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__unclassified Fidelibacterota;s__Fidelibacterota bacterium UBA2129


ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: The University of Melbourne


ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Streptomyces sp. NPDC087460


ncbi_organism_name: Candidatus Midichloria sp.

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Rickettsiales;f__Candidatus Midichloriaceae;g__Candidatus Midichloria;x__unclassified Candidatus Midichloria;s__Candidatus Midichloria sp.


ncbi_country: USA: California; Modesto

ncbi_isolation_source: groundwater

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Innovative Genomics Institute


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: China: Gongzhuling

ncbi_isolation_source: fetilized topsoil

ncbi_organism_name: Fimbriimonadaceae bacterium

ncbi_submitter: CAU


ncbi_country: Thailand: Phitsanulok

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Cardiff University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Cape Recife

ncbi_isolation_source: Stromatolite

ncbi_organism_name: Leptolyngbyaceae cyanobacterium RM1_1_2

ncbi_submitter: University of Wisconsin, Madison


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus F92073

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Nagoya University


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Fusicatenibacter saccharivorans


ncbi_country: India: Bay of Bengal

ncbi_isolation_source: deep sea sediment

ncbi_organism_name: Brevibacterium sediminis

ncbi_submitter: National Institute of Ocean Technology


ncbi_country: Antarctica: Ace Lake

ncbi_isolation_source: saline lake water

ncbi_organism_name: Candidatus Stygibacter australis

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy: d__Bacteria;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;f__;g__Stygibacter;s__Candidatus Stygibacter australis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Cloacimonadota;c__Candidatus Cloacimonadia;o__Candidatus Cloacimonadales;x__Candidatus Cloacimonadales incertae sedis;g__Stygibacter;s__Candidatus Stygibacter australis


ncbi_country: China: Ya an

ncbi_isolation_source: lung

ncbi_organism_name: Glaesserella parasuis

ncbi_submitter: Sichuan Agricultural University


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Blastocatellia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: St. Louis; MO

ncbi_isolation_source: urine

ncbi_organism_name: Neisseria gonorrhoeae

ncbi_submitter: Washington University


ncbi_country: China: Hunan

ncbi_isolation_source: rice leaves

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Czech Republic

ncbi_isolation_source: intestinal contents of pig

ncbi_organism_name: Lactobacillus amylovorus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Gemmiger sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Gemmiger;x__environmental samples;s__uncultured Gemmiger sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Duncaniella freteri

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Hainan

ncbi_isolation_source: sputum

ncbi_organism_name: Nocardia sp. CDC159

ncbi_submitter: Tibet University


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Canada: Northern Saskatchewan

ncbi_organism_name: Arthrobacter sp. 260

ncbi_submitter: University of Saskatchewan


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Christensenella sp. UBA3798

ncbi_submitter: University of Queensland


ncbi_submitter: Beijing Genome Institute


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 1117819

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Lactiplantibacillus plantarum

ncbi_submitter: Institute of Functional Genomics Lyon (IGFL)


ncbi_country: Ireland

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: HEALTH SERVICE EXECUTIVE


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Taiwan

ncbi_isolation_source: blood

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_country: State of Palestine:Bethlehem

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Leibniz Institute DSMZ


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Lethbridge


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Streptomyces californicus

ncbi_strain_identifiers: NRRL B-2098

ncbi_submitter: University of Illinois


ncbi_country: Canada: Lacombe

ncbi_organism_name: Treponema porcinum

ncbi_submitter: AAFC


ncbi_country: United Kingdom: Scotland; Aberdeen; Scottish Rural College (SRUC) Craibstone

ncbi_isolation_source: agricultural soil; 12C-CH4 incubated pH 4.5 or pH 7.5; selected DNA (low %GC) through ClCs fractionation

ncbi_organism_name: Vampirovibrionales bacterium

ncbi_submitter: Ecole Centrale de Lyon


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;f__Candidatus Puniceispirillaceae;g__Candidatus Puniceispirillum;x__environmental samples;s__uncultured Candidatus Puniceispirillum sp.


ncbi_organism_name: Streptomyces tunisiensis

ncbi_submitter: Facultad de Quimica, Universidad Nacional Autonoma de Mexico


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Viet Nam

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Oklahoma

ncbi_isolation_source: spleen

ncbi_organism_name: Francisella tularensis

ncbi_submitter: Oklahoma State University


ncbi_organism_name: Candidatus Saccharimonadales bacterium

ncbi_submitter: The Microflora Danica Consortium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;c__Candidatus Saccharimonadia;o__Candidatus Saccharimonadales;x__unclassified Candidatus Saccharimonadales;s__Candidatus Saccharimonadales bacterium


ncbi_country: USA: Pittsburgh; Magee-Womens Hospital of UPMC

ncbi_isolation_source: maternal feces

ncbi_organism_name: Coprobacillus sp.

ncbi_submitter: University of California, Berkeley


ncbi_country: China: Anhui

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: Shenzhen People's Hospital


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri


ncbi_organism_name: Frigoribacterium sp.

ncbi_submitter: EPFL


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Exiguobacterium sp. UBA4604

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;x__Bacillales incertae sedis;x__Bacillales Family XII. Incertae Sedis;g__Exiguobacterium;x__unclassified Exiguobacterium;s__Exiguobacterium sp. UBA4604


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: China: Guangzhou; Guangdong

ncbi_isolation_source: activated sludge from wastewater treatment reactor

ncbi_organism_name: Nitrospira sp.

ncbi_submitter: Jinan University


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: East China Normal University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Clostridiaceae bacterium UBA5315


ncbi_country: United Kingdom

ncbi_isolation_source: infant

ncbi_organism_name: Escherichia coli DEC11D

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Denmark

ncbi_isolation_source: Bacteremia

ncbi_organism_name: Aggregatibacter actinomycetemcomitans

ncbi_submitter: Department of Molecular Medicine (MOMA) - Aarhus University Hospital


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: New York_location1

ncbi_isolation_source: potato

ncbi_organism_name: Dickeya dianthicola

ncbi_submitter: University of Maine


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 532413


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: Chile: Regin metropolitana

ncbi_isolation_source: Slaughterhouse

ncbi_submitter: UNIVERSIDAD ANDRES BELLO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_country: China

ncbi_isolation_source: feces

ncbi_submitter: China Agricultural University


ncbi_country: USA

ncbi_isolation_source: half and half mix

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_isolation_source: metal/plastic

ncbi_organism_name: Acinetobacter sp. UBA1496


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Volgograd Plague Control Research Institute


ncbi_isolation_source: Ileo-caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Treponema sp.


ncbi_organism_name: Candidatus Scatocola faecipullorum

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Nasophaynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: UK Health Security Agency


ncbi_isolation_source: gut

ncbi_organism_name: Candidatus Enterococcus mangumiae

ncbi_submitter: Broad Institute


ncbi_organism_name: Agrobacterium tumefaciens

ncbi_submitter: Oregon State University


ncbi_isolation_source: Human dental plaque

ncbi_organism_name: Streptococcus sobrinus

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii 1170863

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_country: China: Yunnan

ncbi_organism_name: Pectobacterium aroidearum

ncbi_submitter: Beijing Academy of Agriculture and Forestry Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: USA: Durham; North Carolina

ncbi_isolation_source: bronchoalveolar lavage

ncbi_organism_name: Mycobacteroides immunogenum

ncbi_submitter: National Jewish Health


ncbi_country: USA: San Francisco

ncbi_organism_name: Pandoraea apista

ncbi_submitter: UCSF


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Acinetobacter variabilis

ncbi_submitter: A*STAR IDLabs


ncbi_organism_name: Acinetobacter baumannii 457946


ncbi_organism_name: Aeromonas jandaei

ncbi_submitter: University of Maryland, School of Medicine


ncbi_country: Baltic Sea

ncbi_organism_name: Brevundimonas sp. BAL450

ncbi_submitter: Linnaeus University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chlamydia trachomatis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium