ncbi_country: Turkey: Mersin

ncbi_isolation_source: Greenhouse

ncbi_organism_name: Pseudomonas corrugata

ncbi_submitter: University of Toronto Mississauga


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Chromosome

ncbi_country: Canada: Ontario

ncbi_genome_representation: full

ncbi_isolation_source: chicken

ncbi_submitter: LFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis;x__Salmonella enterica subsp. enterica serovar Enteritidis str. EC20100134


ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_assembly_level: Contig

ncbi_organism_name: Shewanella algae

ncbi_submitter: Sanya Peoples Hospital


ncbi_country: USA: Florida

ncbi_organism_name: Actinospica acidiphila

ncbi_submitter: University of Wisconsin Madiso


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter lanienae

ncbi_submitter: University of Aberdeen


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Burkholderia pseudomallei 9

ncbi_submitter: NMRC


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: EMG


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_isolation_source: stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


gtdb_representative: t

ncbi_organism_name: uncultured Caryophanaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Actinomyces sp.


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Demequina iriomotensis

ncbi_refseq_category: reference genome

ncbi_submitter: National Institute of Technology and Evaluation Biological Resource Center

ncbi_type_material_designation: assembly from type material


ncbi_assembly_name: freshwater MAG --- Loc090402-1m_bin-0185

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: BILS


ncbi_organism_name: Solibacillus sp. FSL W7-1436

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Solibacillus;x__unclassified Solibacillus;s__Solibacillus sp. FSL W7-1436


ncbi_country: Australia: New South Wales

ncbi_organism_name: Salmonella sp. SG193

ncbi_submitter: University of Technology Sydney


ncbi_country: Poland: Skierniewice

ncbi_isolation_source: tuber

ncbi_organism_name: Pectobacterium zantedeschiae

ncbi_submitter: University of Gdansk


ncbi_organism_name: Kaistella sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_country: Pacific Ocean

ncbi_isolation_source: sediment from ferromanganese module field

ncbi_organism_name: Candidatus Poribacteria bacterium

ncbi_submitter: Huazhong Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Poribacteria;x__unclassified Candidatus Poribacteria;s__Candidatus Poribacteria bacterium


ncbi_country: Australia: Boho South; VIC

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: University of Queensland


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: China: Hangzhou

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agriculture University


ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Universita degli Studi di bari


ncbi_country: Netherlands

ncbi_isolation_source: Blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Yantai Center for Disease Control and Prevention


ncbi_country: France

ncbi_isolation_source: mastitis

ncbi_submitter: KOlimastIR


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Barnesiella sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Thermomicrobium sp.


ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: Universiti Sains Malaysia


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Glutamicibacter nicotianae

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Woeseibacteriota;s__Candidatus Woesebacteria bacterium GW2011_GWB1_31_29


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: Kluyvera intermedia

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Enterobacter cloacae subsp. cloacae

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter cloacae;sb__Enterobacter cloacae subsp. cloacae


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Atlantic Ocean: Scotian Basin oil and gas seep

ncbi_isolation_source: cold seep sediment

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: India: Vellore

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Christian Medical College


ncbi_country: Pacific Ocean: North Pacific Gyre; Station ALOHA

ncbi_isolation_source: ocean water from marine abyssalpelagic zone

ncbi_organism_name: Alteromonas sp.

ncbi_submitter: Simons Collaboration on Ocean Processes and Ecology (SCOPE)


ncbi_organism_name: Aeromonas sp. A3

ncbi_submitter: Bangabandhu Sheikh Mujibur Rahman Agricultural University


ncbi_organism_name: Cellulosimicrobium funkei

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Institute of Biochemistry and Biophysics of the Polish Academy of Sciences


ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_organism_name: Carnobacterium divergens

ncbi_submitter: University of Alberta


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Chromatiaceae bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: sediment

ncbi_organism_name: Armatimonadota bacterium

ncbi_submitter: EPFL


ncbi_country: Norway

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Bacillales bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Firmicutes bacterium CAG:321_26_22

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;x__unclassified Bacillota;s__Firmicutes bacterium CAG:321_26_22


ncbi_organism_name: Escherichia coli

ncbi_submitter: Washington University in St Louis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: Scarlet fever

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_country: South Korea

ncbi_isolation_source: Hydrophilus acuminatus

ncbi_organism_name: Phycicoccus sp. HDW14

ncbi_submitter: Kyung Hee University


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University of Pittsburgh


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Bacteroidales bacterium Bact_02

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__unclassified Bacteroidales;s__Bacteroidales bacterium Bact_02


ncbi_country: Hong Kong

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii AB-HKU3-08

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: California; Eel River; Middle Fork Eel River downstream of confluence with Black Butte river

ncbi_isolation_source: microbial mat material

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Ruijin Hospital


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Xiamen University


ncbi_organism_name: uncultured Nitrospiraceae bacterium


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Loyola University Chicago


gtdb_type_species_of_genus: t

ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Micrococcus luteus NCTC 2665

ncbi_submitter: BGI


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolate: labscale reactor_MAG17

ncbi_organism_name: Rhizobacter sp.

ncbi_strain_identifiers: labscale reactor_MAG17

ncbi_submitter: European Union Horizon 2020 research and innovation programme

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Betaproteobacteria;o__Burkholderiales;x__Burkholderiales genera incertae sedis;g__Rhizobacter;x__unclassified Rhizobacter;s__Rhizobacter sp.


ncbi_country: Chile: Atacama Desert

ncbi_isolation_source: salt crust

ncbi_organism_name: Cyanobacteria bacterium QS_4_48_99

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;x__unclassified Cyanobacteriota;s__Cyanobacteria bacterium QS_4_48_99


ncbi_country: China: Beijing

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Academy of Military Medical Sciences


ncbi_country: China: Guangzhou

ncbi_isolation_source: human clinical specimen

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Birmingham


ncbi_country: South Africa: North-West Province

ncbi_isolation_source: river water

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: North-West University


ncbi_country: Netherlands

ncbi_organism_name: Moraxella catarrhalis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: AAFC


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Leptospiraceae bacterium UBA7230

ncbi_submitter: University of Queensland


ncbi_country: Brazil: Belem

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: LNCC


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: Clemson University


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: China

ncbi_submitter: China Agricultural University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Colombia

ncbi_isolation_source: urine

ncbi_organism_name: Staphylococcus aureus DAR5813

ncbi_submitter: Broad Institute


ncbi_country: USA

ncbi_isolation_source: South China Agricultural University maintained the laboratory-adapted strain of PAO1 acquired from E. Peter Greenberg; University of Washington

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_strain_identifiers: LIUYANG-E

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Acinetobacter pseudolwoffii

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: water

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Ohio State University


ncbi_submitter: Genoscope CEA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Lysobacterales;f__Lysobacteraceae;g__Xanthomonas;s__Xanthomonas campestris;x__Xanthomonas campestris pv. campestris;x__Xanthomonas campestris pv. campestris str. CFBP 1119


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Megasphaera sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: India: Pune

ncbi_organism_name: Agrococcus sp. HG114

ncbi_submitter: National Centre for cell Science


ncbi_organism_name: Pseudomonas sp. XK-1

ncbi_submitter: Dalian University of Technology


ncbi_country: Denmark: Kgs. Lyngby; Technical University of Denmark

ncbi_isolation_source: granules from a lab-scale partial nitritation/anammox bioreactor

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Turicimonas muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Mexico: Gulf of California; Guaymas Basin

ncbi_isolation_source: microbial mat from hydrothermal sediment

ncbi_organism_name: Pontiellaceae bacterium

ncbi_submitter: Harvard University


ncbi_organism_name: Paenibacillus pectinilyticus

ncbi_submitter: Chinese Academy of agricultural Sciences(CAAS)


ncbi_isolation_source: sputum (induced)

ncbi_organism_name: Neisseria sp. HMSC068C04

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillales bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: Kochi University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Phycisphaerales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Dallas; Texas

ncbi_organism_name: Escherichia coli

ncbi_submitter: The University of Texas at Dallas


ncbi_country: Russia: Kazan

ncbi_isolation_source: gut

ncbi_submitter: Kazan Federal University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: sampleID UWx20856

ncbi_submitter: University Hospital Regensburg


ncbi_organism_name: Bifidobacterium catenulatum

ncbi_submitter: Georgia Institute of Technology


ncbi_country: China: Tarim Basin; Xinjiang

ncbi_isolation_source: desert sand

ncbi_organism_name: Streptomyces sp. TRM70350

ncbi_submitter: Tarim University


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Aurantibacter sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Retail Deli

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Cornell University


ncbi_organism_name: Faecalibaculum rodentium


ncbi_country: Germany

ncbi_isolation_source: BAL

ncbi_submitter: SurvCARE


ncbi_organism_name: uncultured Amylibacter sp.

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: China: Henan

ncbi_isolation_source: brain

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Zhejiang University


ncbi_country: Germany: Dresden-Kaditz

ncbi_isolation_source: wastewater inflow

ncbi_submitter: BIOTEC


ncbi_organism_name: uncultured Campylobacter sp.


ncbi_country: Portugal: Lisboa

ncbi_isolation_source: Urinary Tract Infection

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Ramon y Cajal (IRYCIS)


ncbi_isolation_source: human gut

ncbi_organism_name: Lachnospiraceae bacterium AM48-27BH

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: USA: International Space Station

ncbi_isolation_source: water

ncbi_organism_name: Ralstonia pickettii

ncbi_submitter: NASA Ames Research Center


ncbi_organism_name: uncultured Opitutaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_isolation_source: Mariane macroalgea Grateloupia sp.

ncbi_organism_name: uncultured Saprospiraceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Instituto Oswaldo Cruz


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Fibrobacter sp.

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: intestinal content

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: ChinaCDC


ncbi_country: South Africa: Beatrix mine in Welkom district

ncbi_isolation_source: groundwater filtered on filters

ncbi_organism_name: Candidatus Paceibacter sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;c__Minisyncoccia;o__Minisyncoccales;f__Candidatus Paceibacteraceae;g__Candidatus Paceibacter;x__unclassified Candidatus Paceibacter;s__Candidatus Paceibacter sp.


ncbi_country: USA: WA

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington


ncbi_country: Kenya: Talek

ncbi_isolation_source: termite gut

ncbi_organism_name: Spirochaetaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA

ncbi_isolation_source: Broccoli slaw

ncbi_organism_name: Serratia fonticola

ncbi_submitter: University of Arkansas for Medical Sciences


ncbi_country: Canada: Quebec;Champlain Lake

ncbi_isolation_source: Microcystis colony from freshwater lake

ncbi_organism_name: Methylobacterium sp.

ncbi_submitter: Universite de Montreal


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis


ncbi_country: Brazil: Amazon region near Manaus

ncbi_isolation_source: gut

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Federal University of Rio Grande do Sul

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Chongqing Medical University


ncbi_organism_name: Enterococcus sp. E5-168

ncbi_submitter: Institute of Marine Research


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_country: China: Hangzhou

ncbi_isolation_source: sputum

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: Methylobacteriaceae bacterium

ncbi_submitter: Stockholm University


ncbi_organism_name: Duncaniella muris

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Tianjin

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_organism_name: uncultured Stenotrophomonas sp.

ncbi_submitter: EMG


ncbi_country: Spain: Laguna del Tobar

ncbi_isolation_source: aquatic biome

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: Evolutionary Genomics Group


ncbi_isolation_source: human gut


ncbi_organism_name: Bacillus sp. FSL H8-0492

ncbi_submitter: Penn State

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. FSL H8-0492


ncbi_country: Thailand: Ubon

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia cepacia

ncbi_submitter: Northern Arizona University


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond E1 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: University of Montreal


ncbi_country: Australia: Ulupna; NSW

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Eggerthellaceae bacterium


ncbi_organism_name: Caldilineaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: VetagroSup


ncbi_organism_name: Mediterraneibacter gnavus

ncbi_submitter: Leiden University Medical Center


ncbi_organism_name: Akkermansia sp.


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_submitter: Center for Disease Control and Prevention

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;x__unclassified Klebsiella pneumoniae complex;s__Klebsiella pneumoniae complex sp. WS1115


ncbi_organism_name: Aeromonas veronii

ncbi_submitter: National Chung Cheng University


ncbi_organism_name: Eggerthella lenta


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Clostridia bacterium


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: burned soil

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: uncultured Ignavibacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Spain: Huelva; Cueva de la Mora

ncbi_isolation_source: Deep anoxic layer (35m depth) Cueva de la Mora

ncbi_organism_name: Thermoleophilia bacterium

ncbi_submitter: The Pennsylvania State University


ncbi_organism_name: uncultured Acidimicrobiia bacterium

ncbi_submitter: Korea Polar Research Institute


ncbi_country: Germany

ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Universtity Hospital Cologne


ncbi_country: France

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: Clostridium perfringens


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: Hungary

ncbi_isolation_source: Throat

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_country: Denmark: Aalborg E

ncbi_isolation_source: activated sludge from AalE_18-Q3-R2-46

ncbi_organism_name: Candidatus Leptovillus affinis

ncbi_submitter: Aalborg University

ncbi_taxonomy: d__Bacteria;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Ardenticatenia;o__Candidatus Promineifilales;f__Candidatus Promineifilaceae;g__Candidatus Leptovillus;s__Candidatus Leptovillus affinis


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_country: India: Tamil Nadu

ncbi_isolation_source: stool

ncbi_organism_name: Blautia wexlerae

ncbi_submitter: SAHMRI


ncbi_isolation_source: Decubitus Pressure Ulcers

ncbi_organism_name: Staphylococcus aureus

ncbi_strain_identifiers: P7D0 ESCAFLOR

ncbi_submitter: CHU Nimes


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_organism_name: uncultured Anaerolineales bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: China: Shandong

ncbi_isolation_source: feces

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Shandong University


ncbi_organism_name: Citrobacter freundii

ncbi_submitter: Second Affiliated Hospital of Zhejiang University, School of Medicine


ncbi_assembly_name: IMG-taxon 2681812892 annotated assembly

ncbi_organism_name: Microbispora rosea

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Duodenibacillus massiliensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Alphaproteobacteria bacterium 16-39-46

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Enterobacter ludwigii

ncbi_submitter: University of Veterinary Sciences


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: Universiti Teknologi Malaysia


ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Zhejiang University


ncbi_organism_name: uncultured delta proteobacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__environmental samples;s__uncultured delta proteobacterium


ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0609

ncbi_submitter: Broad Institute


ncbi_submitter: University of Verona, Italy


ncbi_isolation_source: human stool

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: DOE JGI


ncbi_organism_name: Anaerobutyricum hallii


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_country: Pakistan

ncbi_isolation_source: nursing call button in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_country: Germany: Koln

ncbi_isolation_source: respiratory tract infection

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: AstraZeneca


ncbi_submitter: Peking University Health Science Center


ncbi_organism_name: Alcanivorax sp.

ncbi_submitter: Ocean University of China


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: Ohtaekwangia sp.


ncbi_country: Sweden: Uppsala

ncbi_isolation_source: abscess

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Uppsala University


ncbi_organism_name: Metapseudomonas resinovorans

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: Zhejiang Chinese Medical University


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Helicobacter sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Allosphingosinicella sp.


ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: China-Japan Union Hospital of Jilin University


ncbi_country: USA: Texas

ncbi_submitter: Keri Norman's shared submissions

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Javiana


ncbi_country: USA: Florida

ncbi_organism_name: Serratia sp. Se-RSBMAAmG

ncbi_strain_identifiers: Se-RSBMAAmG

ncbi_submitter: LANGEBIO

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Yersiniaceae;g__Serratia;x__unclassified Serratia (in: enterobacteria);s__Serratia sp. Se-RSBMAAmG


ncbi_country: India: West Bengal; Kolkata

ncbi_isolation_source: soil

ncbi_organism_name: Sphingobium sp. PNB

ncbi_strain_identifiers: PNB

ncbi_submitter: Bose Institute


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_country: China

ncbi_organism_name: Escherichia coli

ncbi_submitter: China Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli KOEGE 71 (186a)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli KOEGE 71 (186a)


ncbi_country: Panama: Coiba National Park

ncbi_isolation_source: host-associated

ncbi_organism_name: Pseudoalteromonas sp. CO342X

ncbi_submitter: INDICASAT AIP


ncbi_organism_name: Kitasatospora sp. SolWspMP-SS2h


ncbi_country: Russia: Osa; Perm region

ncbi_isolation_source: oil-polluted soil

ncbi_organism_name: Gordonia alkanivorans

ncbi_strain_identifiers: IEGM 748

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_organism_name: Bacteroides heparinolyticus

ncbi_submitter: Yunnan Agricultural University


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Loyola University Chicago


ncbi_country: Turkey: Pamukkale; Hierapolis; Denizli

ncbi_isolation_source: saline water of hot spring with water temperature 37 C

ncbi_organism_name: Methylobrevis pamukkalensis

ncbi_submitter: G.K.Skryabin IBPM PAS


ncbi_country: Kenya

ncbi_isolation_source: stool

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Center of Molecular Biosciences


ncbi_organism_name: Gloeocapsopsis dulcis AAB1 = 1H9

ncbi_submitter: Nanjing Agriculture University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;x__Oscillatoriophycideae;o__Chroococcales;f__Chroococcaceae;g__Gloeocapsopsis;s__Gloeocapsopsis dulcis;x__Gloeocapsopsis dulcis AAB1 = 1H9


ncbi_organism_name: Hyphomonadaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: Canada: Lacombe

ncbi_organism_name: Prevotella sp.

ncbi_submitter: AAFC


ncbi_isolation_source: Dolphin skin

ncbi_organism_name: Mycobacterium marinum

ncbi_submitter: Nippon veterinary and life sciense university


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_isolation_source: feces

ncbi_organism_name: Prevotellamassilia timonensis

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: USA: Chicago; Lurie Children s Hospital

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Ann & Robert H. Lurie Children's Hospital of Chicago


ncbi_country: Australia: Melbourne

ncbi_submitter: Biomedicine Discovery Institute


ncbi_country: USA: Massachusetts; Nahant; Canoe Beach

ncbi_isolation_source: enrichment on artificial chitin hydrogel particle

ncbi_organism_name: Vibrio splendidus

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: China: Guangdong

ncbi_isolation_source: chicken farm feed

ncbi_organism_name: Staphylococcus saprophyticus

ncbi_submitter: South China Agricultural University


ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: USA

ncbi_isolation_source: human skin

ncbi_organism_name: Bacteroides eggerthii

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Rikenella microfusus


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam


ncbi_organism_name: Mucilaginibacter pocheonensis

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: USA: Washington

ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio parahaemolyticus 12315

ncbi_submitter: NOAA Northwest Fisheries Science Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;x__Vibrio harveyi group;s__Vibrio parahaemolyticus;x__Vibrio parahaemolyticus 12315


ncbi_organism_name: Desulfobacterales bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: Enterobacter cloacae

ncbi_submitter: Teaching hospital of Caen Normandy


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M0102

ncbi_submitter: Broad Institute


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Francisella tularensis

ncbi_submitter: Northern Arizona University


ncbi_organism_name: Phocaeicola coprophilus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: not provided; submitted under MIGS 2.1

ncbi_organism_name: Pseudanabaena sp. PCC 6802

ncbi_submitter: JGI


ncbi_isolation_source: animal

ncbi_organism_name: Escherichia coli

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_isolation_source: fish gut metagenome

ncbi_organism_name: uncultured Deferribacteraceae bacterium


ncbi_organism_name: Edaphobacter sp.

ncbi_submitter: Zhejiang University


ncbi_country: Peru

ncbi_submitter: USUHS


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Maternal and Child Health Hospital of Hubei Province


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: Aeromonas salmonicida

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Gemmatimonadaceae bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: National Institute of Infectious Diseases


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_country: Japan

ncbi_isolation_source: not applicable

ncbi_organism_name: Borrelia miyamotoi

ncbi_submitter: Joint Faculty of Veterinary Medicine, Yamaguchi University


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: GEOMAR Helmholtz Centre for Ocean Research


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Alistipes sp. UBA6068

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Spain

ncbi_organism_name: Bifidobacterium dentium

ncbi_submitter: University of Parma


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Urine

ncbi_organism_name: Corynebacterium sp. UMB6689

ncbi_submitter: Loyola University Chicago


ncbi_organism_name: Acidaminococcaceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Bifidobacterium pullorum DSM 20433

ncbi_submitter: Key Laboratory of Dairy BiotecInner Mongolia Agricultural University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pullorum;sb__Bifidobacterium pullorum subsp. pullorum;x__Bifidobacterium pullorum DSM 20433


ncbi_country: Denmark

ncbi_organism_name: Escherichia coli HVH 68 (4-0888028)

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli HVH 68 (4-0888028)


ncbi_country: Germany: Braunschweig

ncbi_organism_name: Bacteroides ovatus

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Streptomyces sp. NPDC012827

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: United Kingdom

ncbi_isolation_source: Slurry Solids

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_country: Switzerland

ncbi_isolation_source: cheese

ncbi_organism_name: Pediococcus acidilactici

ncbi_submitter: Agroscope


ncbi_organism_name: Pseudoxanthomonas mexicana

ncbi_submitter: SHANDONG UNIVERSITY


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Peregrinibacteriota;c__Candidatus Peribacteria;x__environmental samples;s__uncultured Candidatus Peribacteria bacterium


ncbi_organism_name: Raoultella terrigena

ncbi_submitter: University of British Columbia


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: AB PRISMA


ncbi_organism_name: Rhodosalinus sp.

ncbi_submitter: Instituto de Ecologia (Universidad Nacional Autonoma de Mexico)


ncbi_isolate: AOP42_A1_surf _bin _25

ncbi_organism_name: Microbacterium gubbeenense

ncbi_strain_identifiers: AOP42_A1_surf _bin _25

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces griseus


ncbi_organism_name: uncultured Chloroflexia bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Chloroflexia;x__environmental samples;s__uncultured Chloroflexia bacterium


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter cloacae complex sp. 289A7

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 289A7


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0059

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_country: Ukraine: eastern Crimea

ncbi_isolation_source: bubbling pool in the central crater-like structure of an active mud volcano

ncbi_organism_name: Coriobacteriia bacterium

ncbi_submitter: Institute of Bioengineering, Research Center of Biotechnology of RAS


ncbi_organism_name: Alcaligenes aquatilis


ncbi_assembly_name: freshwater MAG --- Umea1_bin-0606

ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: Streptomyces sp. AmelKG-D3

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Coriobacteriia bacterium

ncbi_submitter: EMG


ncbi_country: China: Henan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Huazhong Agricultural University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: human stool

ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: DOE JGI


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Prochlorococcus sp. UBA7448

ncbi_submitter: University of Queensland


ncbi_country: China: Xinjiang

ncbi_organism_name: Frigidibacter albus

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources of PR China


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:The Yellow Sea

ncbi_isolation_source: sediment

ncbi_organism_name: Fuscovulum ytuae

ncbi_submitter: Yantai University


ncbi_organism_name: Caulobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: University of Padova


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Phocaeicola dorei

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: RWTH Aachen University Hospital


ncbi_assembly_name: Rumen uncultured genome RUG12588

ncbi_isolation_source: cattle rumen

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter sp.


ncbi_country: USA: Ohio

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: JCVI


ncbi_country: China: Guizhou; Banpo

ncbi_organism_name: Candidatus Sulfobium sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;c__Nitrospiria;o__Nitrospirales;f__Nitrospiraceae;g__Candidatus Sulfobium;x__unclassified Candidatus Sulfobium;s__Candidatus Sulfobium sp.


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Steroidobacterales bacterium


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Oak Ridge National Laboratory


ncbi_submitter: USDA ARS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Infantis


ncbi_country: New Zealand

ncbi_isolation_source: kiwi fruit

ncbi_organism_name: Pseudomonas savastanoi

ncbi_submitter: New Zealand Institute for Plant & Food research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 2;s__Pseudomonas savastanoi


ncbi_organism_name: Vicinamibacterales bacterium


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Escherichia coli KTE135

ncbi_submitter: Broad Institute


ncbi_organism_name: Escherichia coli

ncbi_submitter: National Institute of Infectious Diseases


ncbi_country: China

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Hangzhou Medical University


ncbi_country: Russia: Irkutsk; Ushakovka river

ncbi_isolation_source: water

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Irkutsk Antiplague Research Institute of Rospotrebnadzor


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Borrelia parkeri SLO

ncbi_strain_identifiers: SLO

ncbi_submitter: Integrated Genomics

ncbi_type_material_designation: assembly designated as reftype


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: University of Duisburg Essen


ncbi_country: China: Shanghai

ncbi_organism_name: Acinetobacter sp. YH01002

ncbi_submitter: South China Agricultural University


ncbi_submitter: Shenzhen University


ncbi_country: USA: RI

ncbi_isolation_source: ground red pepper

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Bareilly;x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000216


ncbi_organism_name: Streptomyces huasconensis


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Kansas State University


ncbi_organism_name: uncultured Brevundimonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Carnobacterium gallinarum DSM 4847

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: uncultured Selenomonas sp.


ncbi_country: Atlantic Ocean

ncbi_isolation_source: Hydrothermal vent sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: The University of Hong Kong


ncbi_country: Pacific Ocean: Mariana Back-Arc Basin vent fields

ncbi_isolate: MAG 58

ncbi_isolation_source: hydrothermal vent

ncbi_organism_name: SAR324 cluster bacterium

ncbi_strain_identifiers: MAG 58

ncbi_submitter: WHOI

ncbi_taxonomy_unfiltered: d__Bacteria;x__delta/epsilon subdivisions;c__Deltaproteobacteria;x__Deltaproteobacteria incertae sedis;x__SAR324 cluster;s__SAR324 cluster bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Kineothrix sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Portugal

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;s__Candidatus Gottesmanbacteria bacterium GW2011_GWA2_42_18


ncbi_organism_name: uncultured Geminicoccaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: France: Versailles

ncbi_isolation_source: cerebrospinal fluid

ncbi_organism_name: Escherichia coli

ncbi_submitter: Hopital Robert-Debre, APHP


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Xanthomonas arboricola


ncbi_country: USA: Arizona

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces rectiverticillatus

ncbi_submitter: NIDDK, NIH


ncbi_country: Australia

ncbi_isolation_source: 3 replicate cellulose-degrading anaerobic digesters sampled at day 96 and day 362

ncbi_organism_name: Clostridiales bacterium Firm_14

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: tonsil swab

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Huazhong Agricultural University


ncbi_country: Finland

ncbi_isolation_source: feces

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: urinogenital fluid

ncbi_organism_name: Neisseria gonorrhoeae MU_NG14

ncbi_submitter: Read Laboratory, Emory University


ncbi_country: China: Hengyang

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: The Second Affiliated Hospital, University of South China


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Lachnobacterium sp.

ncbi_submitter: EMG


ncbi_isolation_source: plant root

ncbi_organism_name: Sinorhizobium fredii CCBAU 25509

ncbi_strain_identifiers: CCBAU 25509

ncbi_submitter: The Chinese University of Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Hyphomicrobiales;f__Rhizobiaceae;x__Sinorhizobium/Ensifer group;g__Sinorhizobium;x__Sinorhizobium fredii group;s__Sinorhizobium fredii;x__Sinorhizobium fredii CCBAU 25509


ncbi_organism_name: Collinsella sp. HCP3S3_B7

ncbi_submitter: Quadram Institute Bioscience


ncbi_country: South Korea: Seoul

ncbi_organism_name: Stenotrophomonas sp. Q16

ncbi_submitter: Korea University


ncbi_country: India: Cuttack

ncbi_isolation_source: sugarcane rhizosphere soil

ncbi_organism_name: Sphingobium indicum B90A

ncbi_submitter: University of Delhi


ncbi_organism_name: uncultured Eggerthella sp.


ncbi_country: Switzerland: Epilimnion Lake Zurich

ncbi_isolation_source: Surface water from Lake Zurich

ncbi_organism_name: Pseudomonas kielensis

ncbi_submitter: University of Zurich


ncbi_country: Japan

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_country: USA: California; Dairy

ncbi_isolate: swab isolate 1

ncbi_isolation_source: nasopharyngeal

ncbi_organism_name: Pasteurella multocida

ncbi_strain_identifiers: swab isolate 1;2125PM

ncbi_submitter: University of California, Davis


ncbi_organism_name: Gordonia hongkongensis

ncbi_submitter: INSTITUTE OF ECOLOGY AND GENETICS OF MICROORGANISMS, URAL BRANCH OF THE RUSSIAN ACADEMY OF SCIENCES


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Clostridium sp.

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Guangzhou

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. BY17LC

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BY17LC


ncbi_country: USA: NC

ncbi_isolation_source: Irrigation water

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_isolation_source: oil-brine

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: Technische Universitaet Muenchen


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Newcastle

ncbi_organism_name: Gemmiger formicilis

ncbi_submitter: University of Queensland


ncbi_assembly_name: Siranensis

ncbi_organism_name: Streptomyces iranensis

ncbi_submitter: HKI JENA


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_country: Hong Kong

ncbi_isolation_source: Anaerobic acesulfame-degrading enriched consortia

ncbi_organism_name: Shinella sp. YE25

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Lachnospiraceae bacterium 10-1


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Polynucleobacter meluiroseus

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Alistipes putredinis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_organism_name: Gardnerella sp. DNF00502

ncbi_submitter: Fred Hutch


ncbi_isolate: tissue of Acanthaster planci

ncbi_organism_name: Microbacterium sp. bgisy203

ncbi_strain_identifiers: bgisy203;tissue of Acanthaster planci

ncbi_submitter: BGI Research


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Cornell University


ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Escherichia coli

ncbi_submitter: Kyoto University


ncbi_organism_name: Vulcanococcus sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Institute of Deep-sea Science and Engineering


ncbi_organism_name: Sphaerochaetaceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Oliverpabstia sp.

ncbi_submitter: Wilmar International Limited


ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Aeromonas sp.

ncbi_submitter: Sichuan University


ncbi_country: Lithuania: Vilnius

ncbi_isolation_source: colon contents

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Brazil: Dourados

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_submitter: Nottingham Trent University


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: Latvian Biomedical Research and Study Centre

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Institute of Molecular Biology NAS Armenia


ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: uncultured Sphingomonas sp.

ncbi_submitter: EMG


ncbi_country: United Kingdom: Esthwaite Water

ncbi_isolation_source: Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water

ncbi_organism_name: Bacteroidetes bacterium B1(2017)

ncbi_submitter: CNRS-AMU

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidetes bacterium B1(2017)


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Duncaniella muris


ncbi_country: USA: Miami

ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Serratia marcescens

ncbi_submitter: University of Pittsburgh


ncbi_assembly_name: Rumen uncultured genome RUG14168

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gaiellales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Thalassolituus sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Streptococcus sp. 20925_1_69

ncbi_submitter: Max-Delbrueck-Center for Molecular Medicine


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: candidate division WOR-3 bacterium

ncbi_submitter: Tongji University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__candidate division WOR-3;s__candidate division WOR-3 bacterium


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Ardenticatenaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Macrococcus psychrotolerans

ncbi_submitter: Masaryk University, Faculty of Science


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Fibrobacter sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_country: Pacific Ocean

ncbi_isolation_source: Chile-Peru Current Coastal Province

ncbi_organism_name: Haliea sp.


ncbi_organism_name: Bacillus thuringiensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Prevotella sp.


ncbi_organism_name: Bacillus haynesii


ncbi_isolation_source: host s whole body

ncbi_submitter: Centre de Biologie pour la Gestion des Populations (CBGP - UMR1062)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;x__aphid secondary symbionts;g__Candidatus Williamhamiltonella;s__Candidatus Williamhamiltonella defendens


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Escherichia coli

ncbi_submitter: McGill University


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University Hospital of Antwerp


ncbi_country: Uruguay

ncbi_isolation_source: common scab lesions on potato tubers

ncbi_organism_name: Streptomyces scabiei

ncbi_submitter: Facultad de Quimica-Universidad de la Republica


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Edinburgh


ncbi_organism_name: Clostridioides difficile CD69

ncbi_submitter: Institute for Genome Sciences


ncbi_country: Germany

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: Deinococcus gobiensis I-0

ncbi_submitter: Biotechnology Research Institute,  the Chinese Academy of Agricultural Sciences


ncbi_country: Canada: Guelph

ncbi_isolation_source: lung

ncbi_organism_name: Mycoplasmopsis cynos

ncbi_submitter: University of Guelph


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: China: Shenzhen

ncbi_isolation_source: shrimp

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: City University of Hong Kong


ncbi_submitter: University of New Hampshire


ncbi_organism_name: Azospirillum argentinense

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_organism_name: Lentilitoribacter sp.

ncbi_submitter: University of Southern California


ncbi_country: India: Tiruvallur

ncbi_isolation_source: Sputum

ncbi_organism_name: Mycobacterium tuberculosis M1295

ncbi_submitter: Broad Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces coeruleoprunus

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_isolation_source: Gastric tissue biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Albert Einstein college of Medicine


ncbi_isolation_source: human feces metagenome

ncbi_submitter: EMG


ncbi_organism_name: Candidatus Ilumatobacter herschelensis

ncbi_submitter: MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY


ncbi_country: USA: Colorado

ncbi_isolation_source: produced fluids from hydraulically fractured shales DJB-1 day 1372

ncbi_organism_name: Thermosipho sp. (in: thermotogales)

ncbi_submitter: The Ohio State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;o__Thermotogales;f__Fervidobacteriaceae;g__Thermosipho;x__unclassified Thermosipho (in: thermotogales);s__Thermosipho sp. (in: thermotogales)


ncbi_country: United Kingdom: England

ncbi_isolate: Invasive disease

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pyogenes

ncbi_strain_identifiers: BSAC_bs1802;Invasive disease

ncbi_submitter: University of Sheffield


ncbi_organism_name: Kocuria arenosa

ncbi_submitter: Chinese Academy of Medical Sciences & Peking Union Medical College


ncbi_organism_name: Lysobacteraceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: USA: Boston

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Enterobacter cloacae complex sp. TREC1

ncbi_submitter: Zhejiang Provincial People's Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. TREC1


ncbi_country: Italy: Bresso; MI

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila serogroup 1

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Caecum


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Pseudomonas putida

ncbi_submitter: University of Applied Sciences of Western Switzerland hepia


ncbi_organism_name: Candidatus Methylomirabilota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;x__unclassified Candidatus Methylomirabilota;s__Candidatus Methylomirabilota bacterium


ncbi_organism_name: Sodaliphilus sp.

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Porphyromonadaceae bacterium UBA3317


ncbi_organism_name: Escherichia coli

ncbi_submitter: Cornell University


ncbi_organism_name: Streptococcus agalactiae GB01004

ncbi_submitter: The J. Craig Venter Institute


ncbi_organism_name: Listeria monocytogenes J1816

ncbi_submitter: FDA


ncbi_country: France

ncbi_isolation_source: champenoux soil

ncbi_organism_name: Streptomyces silvae

ncbi_submitter: University Reims Champagne Ardennes UMR FARE


ncbi_country: China: Xinjiang Uygur Autonomous Region

ncbi_organism_name: Bartonella sp. ML71XJBT

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_country: Switzerland: Lake Zurich

ncbi_isolation_source: Switzerland: Lake Zurich; 5 m depth

ncbi_organism_name: Candidatus Planktophila lacus

ncbi_submitter: University of Zurich

ncbi_taxonomy: d__Bacteria;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;g__Candidatus Planktophila;s__Candidatus Planktophila lacus


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_strain_identifiers: STEC 2820

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_country: France: Paris

ncbi_isolation_source: urine

ncbi_strain_identifiers: MecR

ncbi_submitter: Cochin hospital


ncbi_organism_name: Pandoraea cepalis

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: human

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: UTRECHT UNIVERSITY


ncbi_country: Germany: Zoo Saarbruecken

ncbi_isolation_source: feces

ncbi_organism_name: Brachymonas sp.

ncbi_submitter: Center for Bioinformatics


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Corynebacterium jeikeium K411

ncbi_submitter: Bielefeld Univ


ncbi_isolation_source: Environmental; Oryza sativa seed

ncbi_organism_name: Burkholderia seminalis

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_organism_name: Prosthecobacter sp.

ncbi_submitter: University of Calgary


ncbi_isolation_source: anaerobic digester

ncbi_organism_name: Syntrophothermus sp. UBA3927

ncbi_submitter: University of Queensland


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Thermotogaceae bacterium

ncbi_submitter: Portland State University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Kiloniellaceae bacterium

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: Zhejiang University


ncbi_organism_name: Ligilactobacillus murinus


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroides intestinalis


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: China: Guangdong

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Candidatus Scatosoma sp.

ncbi_submitter: University of Chinese Academy of Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__Clostridia incertae sedis;g__Candidatus Scatosoma;x__unclassified Candidatus Scatosoma;s__Candidatus Scatosoma sp.


ncbi_organism_name: Terriglobales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Escherichia coli

ncbi_submitter: School of Pharmaceutical Sciences of Ribeirao Preto, University of Sao Paulo


ncbi_organism_name: Methylobacterium sp. NPDC017696

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Rhodoluna sp.

ncbi_submitter: University of Michigan


ncbi_assembly_name: freshwater MAG --- VK_bin-1785

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_organism_name: Aeromonas caviae


ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Prevotellaceae bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_submitter: University of Copenhagen


ncbi_organism_name: Candidatus Methylomirabilales bacterium

ncbi_submitter: Second Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__;g__;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;x__unclassified Candidatus Methylomirabilales;s__Candidatus Methylomirabilales bacterium


ncbi_organism_name: Enterobacter cloacae complex sp. 386G2

ncbi_submitter: Bacteriology laboratory, Bicetre hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. 386G2


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerostipes hadrus

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Yersinia pestis

ncbi_submitter: Academy of Military Medical Sciences


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Streptomyces griseus

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Foggia


ncbi_organism_name: Limosilactobacillus vaginalis


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Segatella copri


ncbi_country: China: Yunfu Pyrite Mine; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Duncaniella sp.


ncbi_organism_name: Paraburkholderia sp. MM5384-R2

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Sphingopyxis sp.

ncbi_submitter: Museum National d'Histoire Naturelle


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_country: Greece: Athens

ncbi_isolation_source: Bronchial secretion

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Unniversity of Queensland


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Syntrophomonadaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Tongji University


ncbi_submitter: Centre for Microbiome Research


ncbi_country: Switzerland: Lausanne

ncbi_isolation_source: gut

ncbi_organism_name: Lactobacillus kullabergensis

ncbi_submitter: University of Lausanne


ncbi_country: China: Beijing

ncbi_isolation_source: river sediments grown in denitrifying medium in anaerobic bioreactor system

ncbi_organism_name: Xinfangfangia sp.

ncbi_submitter: Colledge of Environmental Sciences and Engineering, Peking University


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_country: Sudan: Nyala

ncbi_isolation_source: lung

ncbi_submitter: CIRAD

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Mycoplasmatales;f__Mycoplasmataceae;g__Mycoplasma;x__Mycoplasma mycoides group;s__Mycoplasma capricolum;sb__Mycoplasma capricolum subsp. capripneumoniae


ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_country: Australia: Surat Basin

ncbi_isolation_source: anaerobic enrichment culture derived from coal bed methane formation water

ncbi_organism_name: Clostridiales bacterium PH28_bin88

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Haemophilus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Canada: Lacombe

ncbi_organism_name: Campylobacteraceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Italy: Florence

ncbi_isolation_source: lesion swab

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Trento


ncbi_organism_name: Micrococcus luteus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_name: Rumen uncultured genome RUG12374

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Russia: Moscow

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_country: Malawi

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Mycolicibacterium conceptionense

ncbi_submitter: Kenya Marine And Fisheries Research Institute


ncbi_country: USA: CA

ncbi_isolation_source: feces

ncbi_organism_name: Shigella dysenteriae

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_country: China

ncbi_isolation_source: paddy soil

ncbi_organism_name: Fundidesulfovibrio terrae

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Scotland

ncbi_isolation_source: forestomach

ncbi_organism_name: Limosilactobacillus reuteri

ncbi_submitter: University of Alberta


ncbi_isolation_source: Faeces


ncbi_isolation_source: chicken caecal content

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Veillonella parvula

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: China: Wuhan; Hubei

ncbi_organism_name: Mycolicibacterium neoaurum

ncbi_submitter: Renmin Hospital of Wuhan University


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus anginosus


ncbi_assembly_name: freshwater MAG --- Loc090907-5m_bin-323

ncbi_isolation_source: lake water

ncbi_organism_name: Synechococcus lacustris

ncbi_submitter: BILS


ncbi_country: China: Qinghai

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_organism_name: Bacillus cereus VD021

ncbi_submitter: Broad Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus cereus;x__Bacillus cereus VD021


ncbi_country: Spain: Asturias

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Hospital Universitario Central de Asturias


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Knoxville; TN

ncbi_isolation_source: feces extracted directly from colon

ncbi_organism_name: Eubacterium sp.

ncbi_submitter: Oak Ridge National Laboratory


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Brevibacterium casei

ncbi_submitter: University of Queensland


ncbi_country: India: Upper Yumthang; Sikkim

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis subsp. subtilis

ncbi_submitter: ICAR-National Bureau Of Agriculturally Important Microorganisms

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;s__Bacillus subtilis;sb__Bacillus subtilis subsp. subtilis


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolation_source: meadow soil

ncbi_organism_name: Candidatus Rokuibacteriota bacterium

ncbi_submitter: Jill Banfield's Lab at Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Rokuibacteriota;x__unclassified Candidatus Rokuibacteriota;s__Candidatus Rokuibacteriota bacterium


ncbi_assembly_name: freshwater MAG --- AM-lipid-01-D8_bin-0612

ncbi_organism_name: uncultured Chlorobiaceae bacterium


ncbi_country: USA: Daniel Boone National Forest; KY

ncbi_isolate: MAG 28

ncbi_isolation_source: acid mine drainage site biofilm from Rose Pool

ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_strain_identifiers: MAG 28

ncbi_submitter: University of California Davis


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Rubricoccaceae bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_country: Germany: Baden

ncbi_isolation_source: Peat bog soil

ncbi_organism_name: Rouxiella badensis

ncbi_submitter: Charles Sturt University


ncbi_country: South Korea: Saemankum

ncbi_isolation_source: marine sediments

ncbi_organism_name: Shewanella litorisediminis

ncbi_submitter: Karolinska Institutet


ncbi_country: USA: UCLA School of Dentistry

ncbi_isolation_source: saliva

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Methylopila capsulata

ncbi_submitter: WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Washington


ncbi_isolation_source: liver

ncbi_organism_name: Mergibacter septicus

ncbi_submitter: USAMRIID


ncbi_isolation_source: surface marine water in Antarctica

ncbi_organism_name: Bizionia argentinensis JUB59

ncbi_submitter: Departamento de Quimica Biologica - Facultad de Ciencias Exactas y Naturales - Universidad de Buenos Aires


ncbi_organism_name: Vescimonas sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Belgium

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Sciensano


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Paenibacillus illinoisensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: South Africa: King George V Hospital; Durban

ncbi_isolation_source: Bodily fluid

ncbi_organism_name: Mycobacterium tuberculosis TKK_02_0065

ncbi_submitter: Broad Institute


ncbi_country: Switzerland: Geneva

ncbi_isolation_source: sputum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Geneva University Hospital


ncbi_organism_name: Verrucomicrobiia bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Chisholmiibacteriota;s__Candidatus Chisholmbacteria bacterium RIFCSPHIGHO2_01_FULL_52_32


ncbi_country: USA: MA

ncbi_isolation_source: nostril

ncbi_organism_name: Dolosigranulum pigrum

ncbi_submitter: Forsyth Institute


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: The First Affiliated Hospital of Zhengzhou University


ncbi_country: USA: Toledo; OH

ncbi_isolation_source: Neck/Axilla

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University of Washington Laboratory Medicine


ncbi_country: USA: Michigan State University Extension; Berrien County; Michigan

ncbi_isolation_source: leaf

ncbi_organism_name: Frigoribacterium sp. MEB024

ncbi_submitter: University of Chicago


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: Institute of Microbiology and Epizootics


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_country: Turkey

ncbi_isolation_source: WWTP

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Kenya

ncbi_isolation_source: feces

ncbi_organism_name: Ruminococcaceae bacterium UBA737

ncbi_submitter: University of Queensland


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Bradyrhizobium sp. Pha-3

ncbi_submitter: National Institute of Agricultural Sciences, Rural Development Administration


ncbi_submitter: VETUNI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Klebsiella/Raoultella group;g__Klebsiella;x__Klebsiella pneumoniae complex;s__Klebsiella quasipneumoniae;sb__Klebsiella quasipneumoniae subsp. similipneumoniae


ncbi_organism_name: Salmonella sp. NW648

ncbi_submitter: Sichuan University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute of Medical Sciences


ncbi_organism_name: Mycobacterium sp. HOS105

ncbi_submitter: AIIMS, New Delhi


ncbi_organism_name: uncultured cyanobacterium


ncbi_organism_name: Candidatus Limivicinus sp.

ncbi_submitter: Embrapa Pecuaria Sudeste

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;x__Eubacteriales incertae sedis;g__Candidatus Limivicinus;x__unclassified Candidatus Limivicinus;s__Candidatus Limivicinus sp.


ncbi_organism_name: Ensifer adhaerens

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Planctomycetales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Actinomycetes bacterium

ncbi_submitter: University of Waterloo


ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Gardnerella vaginalis

ncbi_submitter: Drexel University College of Medicine


ncbi_country: USA: Chattahoochee River

ncbi_isolation_source: water samples from lakes and estuaries along the Chattahoochee River collected between June/2010 and December/2014

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: New Zealand: Waiwera River; Auckland

ncbi_isolation_source: sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Handley Lab, University of Auckland


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_organism_name: Flexilinea sp.

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: insect on Acer sp.

ncbi_organism_name: Serratia symbiotica

ncbi_submitter: Queen Mary University of London


ncbi_country: South Korea:Gyeonggi-do; Seongnam-si

ncbi_organism_name: Akkermansia muciniphila

ncbi_submitter: Korean Collection for Type Culture, Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology


ncbi_country: South Korea

ncbi_isolation_source: biofloc rearing seawater

ncbi_organism_name: Alphaproteobacteria bacterium

ncbi_submitter: Inha University


ncbi_country: USA: Ohio; Lake Erie; Sandusky Bay

ncbi_isolation_source: Freshwater

ncbi_organism_name: Planktothrix agardhii 1801

ncbi_submitter: Bowling Green State University


ncbi_country: USA: Santa Barbara Zoo

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: University of California, Santa Barbara


ncbi_country: Thailand

ncbi_isolation_source: Poultry Meat

ncbi_organism_name: Salmonella enterica

ncbi_submitter: Mahidol University


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Kiritimatiellota bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Kiritimatiellota;x__environmental samples;s__uncultured Kiritimatiellota bacterium


ncbi_country: Pakistan

ncbi_isolation_source: Pus

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: National University of Science and Technology


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: urine

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Adolfo Lutz


ncbi_country: Canada: Lacombe

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Italy

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Sapienza University of Rome


ncbi_organism_name: Streptomyces sp. NRRL WC-3773

ncbi_strain_identifiers: NRRL WC-3773

ncbi_submitter: University of Illinois


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: the seqafrica consortium


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: Tunisia

ncbi_organism_name: Serratia marcescens

ncbi_submitter: ANSES


ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_country: Sweden: Gothenburg

ncbi_isolation_source: human

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Gothenburg - CCUG


ncbi_country: Canada

ncbi_isolation_source: waste water

ncbi_organism_name: Pseudomonas putida LS46

ncbi_submitter: University of Manitoba,


ncbi_submitter: The University of Texas at San Antonio


ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: Costa Rica: Refugio de Vida Silvestre Golfito; Puntarenas

ncbi_isolation_source: cuticle

ncbi_organism_name: Streptomyces sp. 8L

ncbi_submitter: Universidad de La Frontera


ncbi_organism_name: Neisseria elongata

ncbi_submitter: Hospital Sirio-Libanes


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: Chinese Academy of Sciences


ncbi_organism_name: Lachnospiraceae bacterium


ncbi_country: Norway

ncbi_isolation_source: stool

ncbi_strain_identifiers: St. Olav40

ncbi_submitter: Norwegian University of Science and Technology


ncbi_country: USA

ncbi_submitter: University of Florida


ncbi_country: India: Uttar Pradesh

ncbi_isolation_source: milk

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: Verrucomicrobiales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Brazil

ncbi_isolation_source: soybean seeds

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Brazilian Microbiome Project

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: Mauritius: Poudre d Or

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Mauritius


ncbi_country: Kenya

ncbi_isolation_source: wound

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Aga Khan University


ncbi_country: China: Fuzhou

ncbi_isolation_source: environmental wastewater

ncbi_submitter: Fujian Agriculture and Forestry University


ncbi_country: USA: FL; Dry Tortugas

ncbi_isolation_source: coral surface mucus layer and tissue

ncbi_organism_name: Alteromonas sp. Cnat3-28

ncbi_submitter: Meyer Microbes Lab


ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Planctomycetaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: not available: not collected

ncbi_organism_name: Streptococcus lutetiensis

ncbi_submitter: SC


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Huashan Hospital


ncbi_organism_name: Candidatus Choladocola sp.

ncbi_submitter: Christian-Albrechts-University Kiel

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;x__Lachnospiraceae incertae sedis;g__Candidatus Choladocola;x__unclassified Candidatus Choladocola;s__Candidatus Choladocola sp.


ncbi_country: USA: CA

ncbi_isolation_source: nectarine

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under high O2 conditions; 0.1 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Kaiseribacteriota;s__Candidatus Kaiserbacteria bacterium RIFCSPHIGHO2_01_FULL_50_13


ncbi_submitter: USDA-ARS-WRRC-PSM

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Thompson;x__Salmonella enterica subsp. enterica serovar Thompson str. RM6836


ncbi_organism_name: Sulfitobacter pontiacus

ncbi_submitter: University of Southern California


ncbi_isolation_source: Faeces

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: tissue

ncbi_organism_name: Yersinia ruckeri

ncbi_submitter: Norwegian Veterinary Institute


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: University of Calgary


ncbi_organism_name: Akkermansia muciniphila


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: South Africa: Western Cape

ncbi_organism_name: Mycoplasma sp. Ms02

ncbi_submitter: Stellenbosch University


ncbi_isolation_source: phyllosphere_metagenome_of_Oryza sativa

ncbi_organism_name: uncultured Acidovorax sp.

ncbi_submitter: INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY


ncbi_organism_name: Phenylobacterium sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: Lab-scale methanogenic bioreactor treating purified terephthalic acid process wastewater

ncbi_organism_name: Syntrophorhabdus sp. PtaU1.Bin002

ncbi_submitter: University of Illinois


ncbi_country: United Kingdom

ncbi_isolation_source: Oral

ncbi_organism_name: Ligilactobacillus murinus

ncbi_submitter: King's College London


ncbi_organism_name: Pseudomonas sp. SB113

ncbi_submitter: University Of Warwick


ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: ACFMW

ncbi_submitter: NHGRI/NIH


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Shandong University


ncbi_organism_name: Kribbella sp. NBC_01510

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_country: China

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Sir Run Run Shaw Hospital


ncbi_organism_name: uncultured Acidobacteriota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;x__environmental samples;s__uncultured Acidobacteriota bacterium


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: University Medical Center Groningen


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: University of Plovdiv


ncbi_organism_name: uncultured Sarcina sp.

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: Taiwan

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: China: Jiangsu

ncbi_organism_name: Escherichia coli

ncbi_submitter: Yangzhou University


ncbi_organism_name: Lactobacillus helveticus

ncbi_submitter: Agroscope


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Singapore

ncbi_isolation_source: ETTA

ncbi_organism_name: Acinetobacter baumannii

ncbi_strain_identifiers: SGH 59 pre

ncbi_submitter: The University of Sydney


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_submitter: Ares Genetics


ncbi_isolation_source: Pig rectal swab

ncbi_submitter: Ausgem


ncbi_organism_name: Enterobacter asburiae

ncbi_submitter: University Medical Center Hamburg Eppendorf


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Hong Kong Special Administrative Region

ncbi_isolation_source: activated sludge from Hong Kong Shatin wastewater treatment plant

ncbi_organism_name: Desulfobacteraceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Iran: Karaj

ncbi_isolation_source: rumen

ncbi_organism_name: Saccharofermentans sp.

ncbi_submitter: Baqiyatallah University of Medical Sciences


ncbi_organism_name: [Ruminococcus] torques

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: USA: Hoodsport

ncbi_isolation_source: plankton

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M - Corpus Christi


ncbi_country: Australia: Davies Reef; Great Barrier Reef

ncbi_isolation_source: sponge microbiome high temperature; low CO2

ncbi_submitter: Australian Institute of Marine Science

ncbi_taxonomy: d__Bacteria;p__Acidobacteriota;c__Terriglobia;o__Candidatus Versatilivoradales;f__Candidatus Versatilivoraceae;g__Candidatus Versatilivorator;s__Candidatus Versatilivorator vitaminiformans


ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Biological Resource Center, National Institute of Technology and Evaluation (NBRC)