ncbi_organism_name: Candidatus Limnocylindria bacterium

ncbi_submitter: University of California Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;x__unclassified Candidatus Limnocylindria;s__Candidatus Limnocylindria bacterium


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_organism_name: Devosiaceae bacterium

ncbi_submitter: Ocean University of China


gtdb_representative: t

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Streptomyces sp. NPDC059076

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_assembly_level: Contig

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Bryobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Queensland


ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_assembly_name: freshwater MAG --- Loclat_bin-10374

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Spirochaetota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;x__environmental samples;s__uncultured Spirochaetota bacterium


ncbi_isolation_source: water

ncbi_organism_name: Citrobacter werkmanii

ncbi_submitter: UNIVERSIDAD COMPLUTENSE DE MADRID


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_organism_name: Sutterella seckii

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_isolation_source: sputum

ncbi_organism_name: Achromobacter ruhlandii

ncbi_submitter: N.F.Gamaleya National Research Center for Epidemiology and Microbiology


ncbi_organism_name: Bifidobacterium pseudocatenulatum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: Faeces

ncbi_organism_name: Mucispirillum schaedleri

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Aurantimicrobium sp.

ncbi_submitter: China Agricultural University


ncbi_organism_name: [Clostridium] innocuum

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: Rumen uncultured genome hRUG903

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Canada: Ontario

ncbi_isolation_source: manure from farm

ncbi_submitter: Food and Water Safety Consortium


ncbi_assembly_level: Complete Genome

ncbi_isolation_source: wastewater

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Mucispirillum sp.

ncbi_submitter: EMG


ncbi_country: Chile: Santiago

ncbi_isolation_source: wound

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad del desarrollo


ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_organism_name: Streptococcus uberis

ncbi_submitter: Monash University


ncbi_organism_name: Paenibacillus sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA

ncbi_isolation_source: environmental

ncbi_organism_name: Burkholderia contaminans

ncbi_submitter: University of Michigan


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: Urine

ncbi_organism_name: Lactobacillus iners

ncbi_submitter: Loyola University Chicago


ncbi_country: China: Jiangsu

ncbi_submitter: Nanjing agticultural university


ncbi_country: Australia

ncbi_organism_name: Burkholderia pseudomallei MSHR87

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_country: Pakistan

ncbi_isolation_source: blood from neonate

ncbi_organism_name: Mammaliicoccus sciuri

ncbi_submitter: Cardiff University


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_assembly_name: freshwater MAG --- Umea3_bin-4239

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Psychroserpens mesophilus

ncbi_submitter: Shantou University


ncbi_organism_name: Bifidobacterium pseudolongum AGR2145

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Kennedy Institute of Rheumatology, University of Oxford


ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: National Cancer Institute - NIH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Bacillus altitudinis

ncbi_submitter: Auburn University


ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Candidatus Cybelea sp.

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Vulcanimicrobiota;c__Vulcanimicrobiia;o__Vulcanimicrobiales;f__Vulcanimicrobiaceae;g__Candidatus Cybelea;x__unclassified Candidatus Cybelea;s__Candidatus Cybelea sp.


ncbi_country: Italy: Molveno (TN)

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: India: Chandigarh

ncbi_isolation_source: Female Nares

ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: CSIR-Institute of Microbial Technology


ncbi_organism_name: uncultured Mollicutes bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;x__environmental samples;s__uncultured Mollicutes bacterium


ncbi_country: China:Najing province

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus subtilis

ncbi_submitter: Huaiyin Institute of Technology


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: China

ncbi_isolation_source: sputum specimens

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Southwest Medical University


ncbi_isolation_source: wastewater metagenome

ncbi_organism_name: uncultured Lysobacterales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: Stockholm University


ncbi_assembly_name: freshwater MAG --- D-4_bin-03

ncbi_isolation_source: pond

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: China: Hangzhou

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Sir Run Run Shaw Hospital, College of Medicine, Zhejiang University


ncbi_isolation_source: tracheal aspirate

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Central Research Institute of Epidemiology


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Akkermansia sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Faecalibaculum rodentium


ncbi_submitter: Translational Health Science and Technology Institute


ncbi_country: Spain: Seville

ncbi_isolation_source: Tracheobronchial aspirate

ncbi_submitter: Institute of Biomedicine of Seville (IBiS)


ncbi_country: Pacific Ocean

ncbi_isolation_source: seawater

ncbi_organism_name: Tritonibacter mobilis

ncbi_submitter: Technical University of Denmark


ncbi_country: Estonia

ncbi_isolation_source: intraabdominal fluid

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Tartu


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Ligilactobacillus ruminis

ncbi_submitter: Veterinary Research Institute


ncbi_country: Mexico: Tepoztlan; Morelos

ncbi_isolation_source: legume-root nodule

ncbi_organism_name: Rhizobium sp. N1314

ncbi_submitter: Centro de Ciencias Genomicas UNAM


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: South Korea: Jinju

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_organism_name: Clostridium perfringens

ncbi_submitter: Oregon State University


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: SC


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: United Kingdom:England

ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Canada: Axel Heiberg Island;Nunavut

ncbi_organism_name: Flavobacterium sp. UBA6031

ncbi_submitter: University of Queensland


ncbi_isolation_source: uncut heroin sample

ncbi_organism_name: Shouchella clausii

ncbi_submitter: Bielefeld University


ncbi_organism_name: Jaaginema sp. PMC 1078.18

ncbi_submitter: National Museum of Natural History - Paris


ncbi_isolation_source: fecal sample

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Christian Medical College


ncbi_country: United Kingdom: England

ncbi_isolation_source: Urine (FREE)

ncbi_submitter: University of Liverpool


ncbi_isolation_source: Caecum

ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Yersinia intermedia


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Kineothrix sp.


ncbi_country: USA: New York; Rochester

ncbi_isolation_source: nasopharyngeal

ncbi_submitter: Drexel


ncbi_country: USA

ncbi_isolation_source: BLOOD


ncbi_assembly_level: Chromosome

ncbi_country: Switzerland

ncbi_organism_name: Coxiella burnetii

ncbi_submitter: IHU mediterranee infection


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Xiamen University


ncbi_country: USA: San Diego; CA

ncbi_isolation_source: urine

ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola University Chicago


ncbi_isolation_source: chicken

ncbi_organism_name: Clostridium perfringens

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_organism_name: uncultured Anaeroplasmataceae bacterium


ncbi_organism_name: uncultured Bacteroides sp.


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Eubacterium sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_country: China: Zhejiang

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_country: USA: WA

ncbi_isolation_source: stool

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Heidelberg;x__Salmonella enterica subsp. enterica serovar Heidelberg str. CFSAN002066


ncbi_organism_name: Parasphingorhabdus sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Chitinophaga pinensis

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Rhizobium sp. Q54


ncbi_country: China: Shanghai


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Porphyromonadaceae bacterium UBA4259

ncbi_submitter: University of Queensland


ncbi_assembly_name: SAQ

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Los Alamos National Laboratory


ncbi_organism_name: uncultured Sulfurovum sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Candidatus Dormiibacterota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Candidatus Dormiibacterota;x__unclassified Candidatus Dormiibacterota;s__Candidatus Dormiibacterota bacterium


ncbi_organism_name: Parvicellaceae bacterium

ncbi_submitter: Evolutionary Genomics Group


ncbi_organism_name: uncultured Rhizobiaceae bacterium

ncbi_submitter: Spribille Lab


ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: Monash University


ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: The University of Texas at Austin

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_isolation_source: cold seep

ncbi_organism_name: bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Escherichia coli

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Necropsobacter rosorum

ncbi_submitter: IHU - Mediterranee Infection


ncbi_organism_name: Streptomyces sp.


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Minnesota

ncbi_isolation_source: ileum

ncbi_organism_name: Lactobacillus sp. UMNPBX17

ncbi_submitter: University of Minnesota


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Rhodospirillaceae bacterium

ncbi_submitter: The University of Melbourne


ncbi_country: USA: Utah; Crystal Geyser near Green River

ncbi_isolation_source: subsurface aquifer

ncbi_organism_name: Shewanella vesiculosa

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Mariane macroalgea Ulva sp.

ncbi_organism_name: uncultured Caulobacterales bacterium

ncbi_submitter: marine college, shandong university


ncbi_country: China: Guangxi; Wuyi

ncbi_isolation_source: sediment

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake brine

ncbi_organism_name: Candidatus Hydrogenedentota bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Hydrogenedentota;x__unclassified Candidatus Hydrogenedentota;s__Candidatus Hydrogenedentota bacterium


ncbi_country: Colombia: Cali

ncbi_isolation_source: liver

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: University of Sao Paulo


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnoclostridium sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: Paracoccaceae bacterium


ncbi_assembly_name: Rumen uncultured genome RUG11504

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_organism_name: Pseudolabrys sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_country: Brazil

ncbi_isolation_source: blood

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Dublin


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured bacterium


ncbi_country: Netherlands: Rotterdam

ncbi_isolation_source: Two-stage PNA wastewater reactor

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: University of Washington


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: Thailand

ncbi_isolation_source: urine

ncbi_organism_name: Burkholderia pseudomallei

ncbi_submitter: SC


ncbi_country: South Korea:Busan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Pukyong National University


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Prevotellaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Maribacter arcticus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_isolation_source: low severity burned soil

ncbi_organism_name: Myxococcales bacterium

ncbi_submitter: Colorado State University


ncbi_country: France: Paris

ncbi_organism_name: Escherichia coli

ncbi_submitter: inserm


ncbi_isolation_source: beach sand samples (comprising of small lime stones) from the sea mouth of Chilika lake

ncbi_organism_name: Pseudorhizobium endolithicum

ncbi_refseq_category: reference genome

ncbi_submitter: UNIVERSITY COLLEGE LONDON

ncbi_type_material_designation: assembly from type material


ncbi_country: USA

ncbi_organism_name: Vibrio cincinnatiensis

ncbi_submitter: CDC


ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_submitter: IMPERIAL COLLEGE LONDON


ncbi_organism_name: Blautia sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_organism_name: Gemmatimonadota bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Parabacteroides goldsteinii


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: Lewinellaceae bacterium

ncbi_submitter: Stockholm University


ncbi_country: USA: South Dakota

ncbi_isolation_source: lung from feeder

ncbi_organism_name: Mycoplasmopsis bovis

ncbi_submitter: USDA/ARS/National Animal Disease Center


ncbi_submitter: Karolinska Institutet


ncbi_organism_name: Planococcus sp. (in: firmicutes)

ncbi_submitter: Second Institute Of Oceanography,MNR

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Caryophanaceae;g__Planococcus;x__unclassified Planococcus (in: firmicutes);s__Planococcus sp. (in: firmicutes)


ncbi_country: USA: FL

ncbi_isolation_source: feces calf

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Streptococcus anginosus

ncbi_submitter: Loyola Univeristy Chicago


ncbi_country: Mexico: Cuatro Cienegas

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. CC216B

ncbi_submitter: Tecnologico de Monterrey


ncbi_country: Spain: Madrid

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Spanish National Centre for Biotechnology


ncbi_organism_name: Escherichia coli O55:H7

ncbi_submitter: United State Department of Agriculture


ncbi_country: South Korea

ncbi_isolation_source: nuts

ncbi_organism_name: Cronobacter turicensis

ncbi_submitter: FDA/CFSAN


ncbi_country: China: Sinkiang

ncbi_isolation_source: homemade cheese

ncbi_organism_name: Lactobacillus acidophilus

ncbi_submitter: key lab of dairy science, ministry of education, northeast agriculture university


ncbi_organism_name: uncultured Phycisphaera sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Italy

ncbi_isolation_source: Pasta

ncbi_organism_name: Bacillus tropicus

ncbi_submitter: Istituto Zooprofilattico Sperimentale Puglia e Basilicata


ncbi_country: China: Qingdao

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Denmark

ncbi_isolation_source: rectal swab

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Southampton


ncbi_country: Argentina: Buenos Aires

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Latin America Working Group on Bacterial Resistance


ncbi_country: USA: Boston; MA

ncbi_organism_name: Staphylococcus aureus M1370

ncbi_submitter: Broad Institute


ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_isolation_source: culture

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of California at Davis


ncbi_country: Namibia: Mashare

ncbi_isolation_source: semi-arid savannah soil

ncbi_organism_name: Terriglobus albidus

ncbi_submitter: Sun Yat-sen University


ncbi_country: United Kingdom: Norwich

ncbi_isolation_source: Deciduous woodland; University campus

ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: University of East Anglia


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Limosilactobacillus mucosae

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: Yates Shaft; SURF

ncbi_organism_name: Geobacillus sp. 44B

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_country: Thailand: Ratchaburi

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus suis

ncbi_submitter: Faculty of Public Health


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Roseburia sp.

ncbi_submitter: EMG


ncbi_country: Italy: Grotta Nuova del Rio Garrafo cave

ncbi_isolation_source: biofilm from sulfidic cave

ncbi_organism_name: Candidatus Methylomirabilis sp.

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy: d__Bacteria;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Methylomirabilota;c__Candidatus Methylomirabilia;o__Candidatus Methylomirabilales;f__Candidatus Methylomirabilaceae;g__Candidatus Methylomirabilis;x__unclassified Candidatus Methylomirabilis;s__Candidatus Methylomirabilis sp.


ncbi_country: Russia: Moscow

ncbi_isolation_source: feces

ncbi_submitter: RCPCM


ncbi_country: Atlantic Ocean: Mid Atlantic Ridge

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Marinosulfonomonas sp.

ncbi_submitter: Portland State University


ncbi_isolation_source: caecum

ncbi_organism_name: Mediterraneibacter glycyrrhizinilyticus

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: urine

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_country: Sweden: Stockholm

ncbi_isolation_source: biopsy

ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Rostock University Medical Center


ncbi_country: Canada: Alberta

ncbi_isolation_source: groundwater

ncbi_organism_name: Phycisphaerales bacterium

ncbi_submitter: University of Calgary


ncbi_country: China

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Streptomyces sp. NBC_01020

ncbi_submitter: Technical University of Denmark


ncbi_isolation_source: secretions

ncbi_organism_name: Morganella morganii subsp. morganii

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Desulfuromonadales bacterium

ncbi_submitter: Yantai University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: China Institute of Veterinary Drug Control


ncbi_country: United Kingdom:England

ncbi_submitter: SC


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Shewanella xiamenensis

ncbi_submitter: Soochow University


ncbi_isolation_source: sterile site


ncbi_country: Pacific Ocean:Eastern Tropical North Pacific ODZ

ncbi_isolation_source: oxycline seawater

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: Pseudomonas urmiensis

ncbi_submitter: Cornell University


ncbi_isolation_source: kidney

ncbi_organism_name: Flavobacterium psychrophilum

ncbi_submitter: NATIONAL VETERINARY INSTITUTE (SVA)


ncbi_submitter: Chang Gung Memorial Hospital


ncbi_country: Poland: Bialowieza National Park

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus toyonensis

ncbi_submitter: University of Bialystok


ncbi_country: Finland: Enajarvi

ncbi_isolation_source: lake

ncbi_organism_name: bacterium 336/3

ncbi_submitter: University of Turku, Department of Biochemistry

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;x__unclassified Bacteroidota/Chlorobiota group;s__bacterium 336/3


ncbi_organism_name: Pseudanabaena sp.

ncbi_submitter: University of Michigan


ncbi_organism_name: Alistipes sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: uncultured beta proteobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Los Angeles County Public Health Lab microbial pathogen submission group


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Calgary


ncbi_organism_name: Streptomyces bobili

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Deferribacter abyssi

ncbi_strain_identifiers: JR

ncbi_submitter: Western Brittany University


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University Hospital Muenster


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: Sphingomonadales bacterium


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: UNIVERSITY OF MANCHESTER


ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Micrococcaceae;g__Rothia;x__unclassified Rothia (in: high G+C Gram-positive bacteria);s__Rothia sp. (in: high G+C Gram-positive bacteria)


ncbi_country: Indian Ocean: Eastern Africa Coastal Province

ncbi_isolation_source: marine water sample

ncbi_organism_name: Dehalococcoidales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Indonesia: Jambi

ncbi_isolation_source: peat soil

ncbi_organism_name: Candidatus Sulfotelmatobacter sp.

ncbi_submitter: National University of Singapore

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Acidobacteriota;c__Terriglobia;o__Terriglobales;f__Candidatus Korobacteraceae;g__Candidatus Sulfotelmatobacter;x__unclassified Candidatus Sulfotelmatobacter;s__Candidatus Sulfotelmatobacter sp.


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: USA: WA

ncbi_isolation_source: patient with urinary tract infection

ncbi_submitter: University of Washington


ncbi_country: China: Handan

ncbi_organism_name: Bacillus velezensis

ncbi_submitter: Hebei Academy of Agricultural and Forestry Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus subtilis group;x__Bacillus amyloliquefaciens group;s__Bacillus velezensis


ncbi_country: United Kingdom

ncbi_isolation_source: oral swab

ncbi_organism_name: Streptococcus sp. WM07

ncbi_submitter: King's College London


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HANYANG UNIVERSITY


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Spain: off the coast of Alicante

ncbi_isolation_source: marine water

ncbi_organism_name: Erythrobacter sp.

ncbi_submitter: Universidad Miguel Hernandez


ncbi_country: Mexico: Guaymas Basin

ncbi_isolation_source: deep sea sediment sample 4871-20 in thermophilic enrichment culture

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_country: Japan

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN


ncbi_isolation_source: Chicken Breast

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium;x__Salmonella enterica subsp. enterica serovar Typhimurium var. 5-


ncbi_country: USA: Urbana

ncbi_isolation_source: anaerobic digester sludge

ncbi_organism_name: Cyanobacteriota bacterium

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_country: USA

ncbi_isolation_source: stool

ncbi_organism_name: Streptococcus rubneri

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_country: China: Beijing

ncbi_organism_name: Escherichia coli

ncbi_submitter: China CDC


ncbi_country: China: Beijing city

ncbi_submitter: Tianjin Genskey Medical Technology Co., Ltd


ncbi_country: Pakistan

ncbi_isolation_source: washroom sink in hospital intensive care unit

ncbi_organism_name: Brucella anthropi

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_isolation_source: skin sore / abscess / burns / IV Site

ncbi_organism_name: Streptococcus pyogenes


ncbi_country: China

ncbi_isolation_source: animal

ncbi_submitter: National institute for communicable disease control and prevention


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_organism_name: Staphylococcus hominis

ncbi_submitter: University of Washington


ncbi_isolation_source: Colon

ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Tayloriibacteriota bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Tayloriibacteriota;x__unclassified Candidatus Tayloriibacteriota;s__Candidatus Tayloriibacteriota bacterium


ncbi_country: United Kingdom: England

ncbi_submitter: University of Jyvaskyla


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Australia: Heron Island

ncbi_isolation_source: Coral skeleton

ncbi_organism_name: Chlorobium sp.

ncbi_submitter: The University of Melbourne


ncbi_country: Italy

ncbi_isolation_source: environment

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_country: China: Luzhou

ncbi_isolation_source: mud

ncbi_organism_name: Ruminococcaceae bacterium UBA4885

ncbi_submitter: University of Queensland


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_country: Pacific Ocean

ncbi_genome_category: derived from single cell

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-402-G10

ncbi_submitter: Massachusetts Institute of Technology


ncbi_organism_name: uncultured cyanobacterium

ncbi_submitter: Center for Microbial Communities


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Bacilli bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_isolation_source: Unknown

ncbi_organism_name: Streptococcus suis

ncbi_submitter: SC


ncbi_country: USA: Atlanta; GA

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_isolation_source: tonsil swab

ncbi_submitter: Huazhong Agricultural University


ncbi_organism_name: Pseudohongiellaceae bacterium


ncbi_organism_name: Prolixibacteraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: USA: Connecticut

ncbi_isolation_source: single protist cell from termite hindgut

ncbi_submitter: University of Connecticut


ncbi_country: Lebanon

ncbi_organism_name: Enterococcus faecium

ncbi_strain_identifiers: VRE 43

ncbi_submitter: Lebanese American University


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_country: USA: Colorado

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport;x__Salmonella enterica subsp. enterica serovar Newport str. CVM 21559


ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent; Solids-removed thin stillage fed; 1 d SRT; 35C; pH 5.5

ncbi_organism_name: Lactobacillus crispatus

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Helicobacter acinonychis

ncbi_strain_identifiers: MAC-not

ncbi_submitter: University of Gothenburg


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rickettsia typhi

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: USA:San Francisco

ncbi_isolation_source: urethra

ncbi_organism_name: Neisseria gonorrhoeae


ncbi_country: Sweden: Linkoping

ncbi_organism_name: Haemophilus influenzae

ncbi_submitter: TAILORED-Treatment project


ncbi_organism_name: Neisseria meningitidis

ncbi_strain_identifiers: R083;Neisseria meningitidis

ncbi_submitter: UNIVERSITY OF LEICESTER


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: USA: CA

ncbi_isolation_source: cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Canada: Vancouver; Saanich Inlet

ncbi_isolation_source: hypoxic seawater

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: The University of Melbourne


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Technical University of Munich


ncbi_isolation_source: Urine (FREE)

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Liverpool


ncbi_organism_name: Weizmannia sp. CD-2023

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolate: Urine

ncbi_strain_identifiers: STw 88;O8:H19;NILS47:C;Urine;STp 961

ncbi_submitter: UMR 1137 IAME


ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Blood culture

ncbi_submitter: Universidad El Bosque


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: EMG


ncbi_organism_name: uncultured Collinsella sp.


gtdb_type_species_of_genus: t

ncbi_organism_name: Sulfurirhabdus autotrophica


ncbi_country: USA: IN

ncbi_isolation_source: soil

ncbi_submitter: Cornell University


ncbi_country: USA: Hopland; CA

ncbi_isolation_source: Avena fatua rhizosphere soil heavy density fraction time point 9 weeks

ncbi_organism_name: Rhizobium leguminosarum

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Porphyromonadaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: Lactobacillus johnsonii

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: The University Hong Kong

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION


ncbi_organism_name: Rhodospirillaceae bacterium


ncbi_country: Canada: Sherbrooke

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: International Pseudomonas aeruginosa Consortium


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom: London

ncbi_isolation_source: Subgingival plaque

ncbi_organism_name: Porphyromonas gingivalis

ncbi_submitter: University of Leicester


ncbi_organism_name: uncultured Candidatus Thioglobus sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Thioglobus;x__environmental samples;s__uncultured Candidatus Thioglobus sp.


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Bacteroides cellulosilyticus

ncbi_submitter: University of Copenhagen


ncbi_country: USA

ncbi_organism_name: Acinetobacter baumannii 25935_1

ncbi_submitter: Institute for Genome Sciences


ncbi_country: USA: Lyons; GA

ncbi_isolation_source: onion

ncbi_organism_name: Pantoea ananatis

ncbi_submitter: University of Georgia


ncbi_country: China

ncbi_isolation_source: Terrestrial

ncbi_organism_name: Limnothrix sp. FACHB-406

ncbi_submitter: South China Normal University


ncbi_submitter: Universidad del Desarrollo


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Comenius University Science Park


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Peptoanaerobacter stomatis

ncbi_submitter: Liverpool School of Tropical Medicine


ncbi_organism_name: Citrobacter amalonaticus

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Christensenellales bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: uncultured Gemmatimonas sp.


ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well CD01 at time point 2 / B; 5m depth; 0.2 filter

ncbi_organism_name: Nitrospirae bacterium GWB2_47_37

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Nitrospirota;x__unclassified Nitrospirota;s__Nitrospirae bacterium GWB2_47_37


ncbi_organism_name: Escherichia coli O103:H2 str. 12009

ncbi_submitter: University of Tokyo, Graduate School of Frontier Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O103:H2;x__Escherichia coli O103:H2 str. 12009


ncbi_assembly_name: Burkholderia vietnamiensis

ncbi_isolation_source: pea rhizosphere

ncbi_organism_name: Burkholderia sp. AU4i

ncbi_submitter: Institute of Microbial Technology


ncbi_organism_name: uncultured Clostridiaceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: chicken gut metagenome


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Collinsella aerofaciens

ncbi_submitter: Icahn School of Medicine


ncbi_country: Hong Kong

ncbi_organism_name: Salmonella enterica

ncbi_submitter: University of Zurich


ncbi_organism_name: uncultured Psychrobacter sp.

ncbi_submitter: marine college, shandong university


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseobacter sp.


ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: Candidatus Symbiothrix dinenymphae

ncbi_submitter: Microbe Division (RIKEN BRC JCM), RIKEN BioResource Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__Bacteroidales incertae sedis;g__Candidatus Symbiothrix;s__Candidatus Symbiothrix dinenymphae


ncbi_organism_name: Methylocella sp.

ncbi_submitter: Czech Academy of Science


ncbi_isolation_source: low methane producing sheep

ncbi_organism_name: Eubacterium sp. UBA6991

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Eubacteriaceae;g__Eubacterium;x__unclassified Eubacterium (in: firmicutes);s__Eubacterium sp. UBA6991


ncbi_country: China: Chengdu; Sichuan

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: West China Hospital, Sichuan University


ncbi_assembly_name: Salmonella enterica CVM N46850-R v1.0

ncbi_country: USA: PA

ncbi_isolation_source: Chicken Breast

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Newport


ncbi_country: China: Shenzhen

ncbi_isolation_source: environmental

ncbi_organism_name: Bacillus cereus group sp. Bc007

ncbi_submitter: City University of Hong Kong Shenzhen Research Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. Bc007


ncbi_organism_name: uncultured Blautia sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus anginosus


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Clostridiales bacterium

ncbi_submitter: Yonsei University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.


ncbi_organism_name: Micromonospora arborensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: nasopharynx


ncbi_country: Belgium

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Vrije Universiteit Brussel


ncbi_organism_name: Ruminococcus sp.

ncbi_submitter: Washington University School of Medicine


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Bacillus safensis

ncbi_submitter: Auburn University


ncbi_country: Brazil: Campinas

ncbi_isolation_source: hospital

ncbi_organism_name: Klebsiella quasipneumoniae

ncbi_submitter: USP


ncbi_submitter: Faculdade de Farmcia da Universidade de Lisboa, Lisbon, Portugal


ncbi_country: Germany

ncbi_organism_name: Nosocomiicoccus ampullae

ncbi_submitter: Robert Koch Institute


ncbi_country: Mozambique: Manhica

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio cholerae

ncbi_submitter: Centro de Investigacao em Saude de Manhica (CISM)


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Acidobacteriota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Guangdong; Yunfu

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrithrix sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: Russia: Moscow

ncbi_isolation_source: derived from the strain Pseudomonas aeruginosa ATCC 27853

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Pirogov Russian National Research Medical University


ncbi_organism_name: Streptomyces tendae


ncbi_organism_name: Thermomicrobiales bacterium

ncbi_submitter: Zhejiang University


ncbi_isolation_source: sputum

ncbi_organism_name: Streptococcus sp. SI1

ncbi_submitter: University Hospital Dresden


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Guangzhou City; Guangdong Province

ncbi_organism_name: Escherichia coli

ncbi_submitter: South China Agricultural University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMG


ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases


ncbi_country: Denmark: Aarhus

ncbi_isolation_source: skin swab cheek

ncbi_organism_name: Corynebacterium kroppenstedtii

ncbi_submitter: Aarhus University


ncbi_isolation_source: unknown

ncbi_organism_name: uncultured Bacteroides sp.


ncbi_organism_name: Paraclostridium sordellii

ncbi_submitter: SC


ncbi_country: USA

ncbi_organism_name: Bifidobacterium animalis

ncbi_submitter: Icahn School of Medicine


ncbi_isolation_source: rabbit gut

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Ferruginibacter sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_assembly_name: BTK A5

ncbi_submitter: University of Oklahoma Health Sciences Center

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;s__Bacillus thuringiensis;x__Bacillus thuringiensis serovar kurstaki;x__Bacillus thuringiensis serovar kurstaki str. HD-1


ncbi_organism_name: Corynebacterium diphtheriae

ncbi_submitter: Institute for Medical Research


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_submitter: AMR Research Center, National Institute of Infectious Diseases


ncbi_country: USA: NY

ncbi_organism_name: Campylobacter jejuni 32488

ncbi_submitter: University of California at Davis


ncbi_country: USA: Washington

ncbi_organism_name: Bordetella hinzii L60

ncbi_submitter: JCVI


ncbi_country: China: Guangdong

ncbi_isolation_source: swine nasal swab

ncbi_organism_name: Staphylococcus haemolyticus


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_isolation_source: NEUS_CSWMC leachate from a leachate collection cistern at an active municipal landfill in the North Eastern United States

ncbi_organism_name: Macromonas bipunctata

ncbi_submitter: University of Waterloo


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: formation fluids from subseafloor aquifer collected in 2012 through 2014

ncbi_organism_name: Sneathiella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Cyclobacteriaceae bacterium

ncbi_submitter: The University of Queensland


ncbi_country: USA: Emeryville

ncbi_isolation_source: NRRL B1670-derived strain with spontaneous large deletions

ncbi_organism_name: Streptomyces albireticuli

ncbi_strain_identifiers: NRRL B1670 type C

ncbi_submitter: Joint Bioenergy Institute


ncbi_organism_name: Coprobacillus sp. 8_2_54BFAA

ncbi_submitter: MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY


ncbi_country: USA: Texas

ncbi_organism_name: Pseudomonas nitroreducens

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Klebsiella variicola

ncbi_submitter: University hospital Lubeck


ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: Brazil: Hospital das Clinicas; Sao Paulo

ncbi_isolation_source: catheter

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Sao Paulo


ncbi_country: Canada: Ontario

ncbi_isolation_source: water

ncbi_organism_name: Sphingomonas sp.

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Algibacter sp.


ncbi_country: China: Nanjing

ncbi_isolation_source: Laboratory-scale bioreactor

ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: NanJing University


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maharshi Dayanand University, Rohtak


ncbi_organism_name: uncultured Neisseria sp.

ncbi_submitter: EMG


ncbi_country: Canada: Guelph

ncbi_isolation_source: soil

ncbi_submitter: University of Guelph


ncbi_country: Taiwan

ncbi_organism_name: Hymenobacter piscis

ncbi_submitter: National Kaohsiung University of Science and Technology


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Case Western Reserve University


ncbi_organism_name: Aerococcus urinae

ncbi_submitter: Loyola University Chicago


ncbi_country: Germany: Tubingen

ncbi_isolation_source: leaf

ncbi_organism_name: Sphingomonas sp. Leaf198

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: France

ncbi_submitter: Universite Paris-Sud


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Leclercia adecarboxylata


ncbi_isolate: new MAG-336

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Bacteroidia bacterium

ncbi_strain_identifiers: new MAG-336

ncbi_submitter: Micoorganism

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__unclassified Bacteroidia;s__Bacteroidia bacterium


ncbi_organism_name: Dysosmobacter sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Pseudomonas sp. JL1

ncbi_submitter: China Agricultural University


ncbi_country: Republic of the Congo: Pointe-Noire

ncbi_isolation_source: P1 gut compartment

ncbi_organism_name: Spirochaetota bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Rural Development Administration


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_isolate: AOP13_A1_surf _bin _1

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_strain_identifiers: AOP13_A1_surf _bin _1

ncbi_submitter: Genoscope


ncbi_organism_name: Streptomyces albidochromogenes

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Pseudohongiellaceae bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_organism_name: Salmonella sp. NW977

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Nocardioides sp.

ncbi_submitter: EMG


ncbi_organism_name: Alistipes communis


ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Aeromonas sp. 84A

ncbi_submitter: Bursa Uludag University, Faculty of Veterinary Medicine


ncbi_organism_name: Bifidobacterium longum


ncbi_organism_name: Sporosarcina sp. A2

ncbi_submitter: Latvian Biomedical Research and Study Centre


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Mediterranean Sea

ncbi_isolation_source: marine water sample

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_country: Canada: Gault Nature Reserve

ncbi_isolation_source: pond D4 freshwater mesocosm in the Large Experimental Array of Ponds platform

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Montreal

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_organism_name: uncultured Gaiellaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Clostridium tertium

ncbi_submitter: Quadram Institute Bioscience


ncbi_organism_name: Microcoleus vaginatus GB1-A3

ncbi_submitter: Institute of Hydrobiology


ncbi_assembly_name: freshwater MAG --- Loclat_bin-00439

ncbi_submitter: BILS


ncbi_organism_name: Bacteroidaceae bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Germany

ncbi_isolation_source: military dog fecal sample

ncbi_organism_name: Enterobacter sp. GER_MD16_1505_Eko_090

ncbi_submitter: Northern Arizona University


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Kentucky

ncbi_organism_name: Streptococcus equi

ncbi_submitter: Texas A&M University


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: Clinical

ncbi_organism_name: Escherichia coli

ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: uncultured Micrococcaceae bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_country: Canada: Alberta

ncbi_isolation_source: Tissue

ncbi_organism_name: Histophilus somni

ncbi_submitter: University of Calgary


ncbi_isolation_source: Feral swine feces

ncbi_submitter: University of Florida


ncbi_country: China: Shanghai

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: EMBL-EBI


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Phocaeicola vulgatus

ncbi_submitter: EMG


ncbi_country: India: Assam

ncbi_isolation_source: hospital patient

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_organism_name: Ruminococcus sp. AF41-9

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: freshwater

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: University of Queensland


ncbi_country: USA: Pennsylvania

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: University of Pittsburgh


ncbi_organism_name: Billgrantia sp.

ncbi_submitter: Shanghai Jiao Tong University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Mailhella sp.


ncbi_organism_name: Staphylococcus epidermidis VCU081

ncbi_submitter: J. Craig Venter Institute


ncbi_country: Bangladesh

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli P0299438.5

ncbi_submitter: IGS


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P4 gut compartment

ncbi_organism_name: Propionibacteriaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Florida Reef Tract near Ft Lauderdale

ncbi_isolation_source: coral surface mucus layer from newly infected colony B

ncbi_organism_name: Tissierellales bacterium


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Switzerland

ncbi_organism_name: Lactobacillus delbrueckii subsp. lactis

ncbi_submitter: Agroscope


ncbi_organism_name: Clostridium haemolyticum NCTC 8350

ncbi_strain_identifiers: NCTC 8350

ncbi_submitter: National Veterinary Institute (SVA)


ncbi_organism_name: Mitsuokella sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured bacterium


ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Amylibacter sp.

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Elusimicrobiota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: lungs

ncbi_organism_name: Mannheimia haemolytica

ncbi_submitter: USDA/ARS


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: BGI


ncbi_country: China: Jiangxi

ncbi_isolation_source: rare earth elements-acid mine drainage (REEs-AMD) contaminated river water

ncbi_organism_name: Sphingomonadales bacterium

ncbi_submitter: Sun Yat-sen University


ncbi_organism_name: bacterium

ncbi_submitter: University of California Davis


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_submitter: USDA-ARS


ncbi_isolation_source: Proximal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: USA: Oakland

ncbi_isolation_source: thermophilic anaerobic digester

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Candidatus Pelagibacterales bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;x__unclassified Candidatus Pelagibacterales;s__Candidatus Pelagibacterales bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: concordia university


ncbi_country: USA: Florida

ncbi_isolation_source: blue hole oxygen minimum zone seawater 60 m

ncbi_organism_name: Phycisphaerae bacterium

ncbi_submitter: Georgia Institute of Technology


ncbi_country: India

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: JCVI


ncbi_organism_name: Raoultella planticola

ncbi_submitter: Universiteit Antwerpen


ncbi_organism_name: Carnobacterium sp. FSL W8-0810

ncbi_submitter: Penn State


ncbi_organism_name: Rhodobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Dorea sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Brazil: Campinas

ncbi_isolation_source: pasteurized fruit juice samples

ncbi_organism_name: Bacillus paralicheniformis

ncbi_submitter: Universidade de Sao Paulo


ncbi_country: China: Guangdong; Daobaoshan

ncbi_organism_name: Candidatus Gottesmanbacteria bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Candidatus Gottesmaniibacteriota;x__unclassified Candidatus Gottesmanbacteria;s__Candidatus Gottesmanbacteria bacterium


ncbi_organism_name: uncultured Desulfobacterales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_isolation_source: catheter

ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: Toho University


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: Australia: Newcastle

ncbi_isolation_source: feces

ncbi_organism_name: Agathobacter sp.

ncbi_submitter: University of Queensland


ncbi_country: Atlantic Ocean

ncbi_isolation_source: single cell amplified by WGA-X; seawater

ncbi_organism_name: Prochlorococcus sp. AG-412-L10

ncbi_submitter: Massachusetts Institute of Technology


ncbi_isolation_source: Faeces

ncbi_organism_name: Parabacteroides distasonis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: CO

ncbi_isolation_source: bovine liver abscess

ncbi_organism_name: Salmonella enterica subsp. enterica

ncbi_submitter: US Food and Drug Administration


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: Atlantic Ocean: North Atlantic Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Tistrella sp.

ncbi_submitter: Tara Oceans Consortium


ncbi_country: United Kingdom: London

ncbi_isolation_source: Rectum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Nottingham Trent University


ncbi_organism_name: Rhodobacterales bacterium

ncbi_submitter: Tang lab


ncbi_country: Germany

ncbi_isolation_source: soil

ncbi_organism_name: Polyangium spumosum

ncbi_submitter: Shandong University


ncbi_country: India: Tuwa hot spring

ncbi_isolation_source: Hot spring sediment

ncbi_organism_name: Thermomicrobiaceae bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Sellimonas sp.

ncbi_submitter: stanford university school of medicine


ncbi_organism_name: Paratractidigestivibacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: addis ababa university


ncbi_organism_name: Parabacteroides johnsonii

ncbi_submitter: Washington University School of Medicine


ncbi_assembly_name: 1st assembly

ncbi_country: Italy

ncbi_isolation_source: cured meat

ncbi_organism_name: Staphylococcus epidermidis UC7032

ncbi_submitter: Universita Cattolica del Sacro Cuore


ncbi_submitter: Universidade Federal de Vicosa

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: South Korea:Jinju

ncbi_isolation_source: flower

ncbi_organism_name: Streptomyces globisporus

ncbi_submitter: Gyeongsang National University


ncbi_country: Iran

ncbi_isolation_source: water

ncbi_organism_name: Salinivibrio proteolyticus

ncbi_submitter: Universidad de Sevilla


ncbi_country: USA: California; Middletown

ncbi_isolation_source: groundwater

ncbi_organism_name: Bdellovibrio sp.

ncbi_submitter: Innovative Genomics Institute


ncbi_isolation_source: mesocosm experiment

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_submitter: biology centre of the czech academy of sciences, institute of hydrobiology


ncbi_organism_name: Christensenellaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: United Kingdom: Warwickshire

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;x__Pseudomonas syringae group genomosp. 1;s__Pseudomonas syringae


ncbi_country: China:Inner mongolia

ncbi_isolation_source: alkaline lake (soda lake)

ncbi_organism_name: Ectothiorhodospiraceae bacterium 2226

ncbi_submitter: Chinese academy of science


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Singapore

ncbi_isolation_source: Milk

ncbi_organism_name: Leuconostoc mesenteroides

ncbi_submitter: NTU - Nanyang Technological University


ncbi_country: Germany: Roxel

ncbi_isolation_source: compost

ncbi_organism_name: Pseudomonas sp. MYb187

ncbi_submitter: Zoological Institute, Kiel University


ncbi_isolation_source: marine water

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Puniceispirillales;x__environmental samples;s__uncultured SAR116 cluster alpha proteobacterium


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Victivallis vadensis

ncbi_submitter: EMG


ncbi_isolation_source: Caecum


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured bacterium


ncbi_country: China: Jiangxi; Yongping

ncbi_isolation_source: sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Flavobacterium chuncheonense

ncbi_submitter: Institution of Microbiology, Chinese Academy of Science(WDCM)


ncbi_organism_name: Albidovulum sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Rhodovibrionaceae bacterium GXU_MW_A322

ncbi_submitter: Guangxi University


ncbi_organism_name: uncultured Anaerolineaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Escherichia coli

ncbi_submitter: University hospital Lubeck


ncbi_organism_name: Bartonella sp. AP58NXGY

ncbi_submitter: Chinese Center for Disease Control and Prevention


ncbi_isolation_source: feces

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Queensland


ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Crocinitomicaceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Nofima


ncbi_organism_name: Salmonella sp. NW1281

ncbi_submitter: Sichuan University


ncbi_organism_name: uncultured Sulfurimonas sp.


ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Laboratory of Genome Science , Tokyo University of Marine Science and Technology


ncbi_submitter: Normandie Univ


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: Tanzania: Lake Tanganyika; Kigoma

ncbi_isolation_source: freshwater lake

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: University of Wisconsin - Madison


ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: Colorado State University


ncbi_country: USA: East Boothbay ME

ncbi_isolation_source: single cell amplified by WGA-X; Bigelow Laboratory Dock

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Bigelow Laboratory for Ocean Sciences


ncbi_organism_name: Opitutaceae bacterium

ncbi_submitter: Quanzhou Normal University


ncbi_organism_name: Streptomyces gardneri

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_isolation_source: human feces

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Melainabacteria;x__environmental samples;s__uncultured Candidatus Melainabacteria bacterium


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Jeonbuk National University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar 4,[5],12:i:-


ncbi_isolation_source: gut metagenome

ncbi_organism_name: uncultured Eubacterium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_country: USA: Delaware Bay

ncbi_isolation_source: Bay warer

ncbi_organism_name: Flavobacteriaceae bacterium

ncbi_submitter: Clemson University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: United Kingdom Health Security Agency


ncbi_organism_name: uncultured Pelagibacteraceae bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Alphaproteobacteria;o__Candidatus Pelagibacterales;f__Candidatus Pelagibacteraceae;x__environmental samples;s__uncultured Pelagibacteraceae bacterium


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_country: Mexico

ncbi_isolation_source: river water

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Muenchen


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: United Kingdom:Midlands

ncbi_isolation_source: not known

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 102

ncbi_submitter: SC


ncbi_organism_name: Butyricicoccaceae bacterium

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: Norway: Baerum

ncbi_isolation_source: Wastewater pump station

ncbi_organism_name: Escherichia coli

ncbi_submitter: Karolinska Institutet


ncbi_country: USA: California; San Francisco Bay

ncbi_isolation_source: estuarine water

ncbi_organism_name: Candidatus Nanopelagicales bacterium

ncbi_submitter: Stanford University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;x__unclassified Candidatus Nanopelagicales;s__Candidatus Nanopelagicales bacterium


ncbi_organism_name: Streptomyces griseoviridis


ncbi_country: Latvia

ncbi_isolation_source: clinical sample

ncbi_submitter: University of Tartu


ncbi_country: Finland

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Helsinki


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_submitter: Geneva University Hospitals


ncbi_organism_name: Geobacillus stearothermophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_country: China: Zhejiang

ncbi_isolation_source: sewage water

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The Hong Kong Polytechnic University


ncbi_organism_name: uncultured Dehalococcoidales bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Mycoplasmopsis canis

ncbi_submitter: University of Guelph


ncbi_isolation_source: human gut metagenome

ncbi_organism_name: uncultured Atopobium sp.

ncbi_submitter: European Bioinformatics Institute


ncbi_organism_name: Acutalibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Tissue

ncbi_organism_name: Bartonella henselae JK 41

ncbi_strain_identifiers: JK 41

ncbi_submitter: Broad Institute


ncbi_isolate: MIFJIFIK

ncbi_organism_name: Candidatus Stammera capleta

ncbi_strain_identifiers: MIFJIFIK

ncbi_submitter: Max Planck Institute for Biology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;x__Enterobacteriaceae incertae sedis;x__ant, tsetse, mealybug, aphid, etc. endosymbionts;g__Candidatus Stammera;s__Candidatus Stammera capleta


ncbi_organism_name: Escherichia coli O83:H1 str. NRG 857C

ncbi_strain_identifiers: NRG 857C

ncbi_submitter: Public Health Agency of Canada Laboratory for Foodborne Zoonoses

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli;x__Escherichia coli O83:H1;x__Escherichia coli O83:H1 str. NRG 857C


ncbi_country: Portugal

ncbi_organism_name: Dickeya solani

ncbi_submitter: Intercollegiate Faculty of Biotechnology of University of Gdansk and Medical University of Gdansk


ncbi_organism_name: Desulfarculia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Micromonospora chalcea

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: China: Gungdong

ncbi_isolation_source: Sputamentum

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: Germany

ncbi_isolation_source: wound

ncbi_organism_name: Clostridium botulinum

ncbi_submitter: Jason Brunt, Arnoud H M van Vliet, Sandra C Stringer, Brigitte G Dorner, Martin B Dorner, Andrew T Carter, Michael W Peck


ncbi_country: USA:New York City

ncbi_isolation_source: metal

ncbi_organism_name: Paenibacillus polymyxa

ncbi_submitter: University of Queensland


ncbi_organism_name: Pantoea vagans

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_country: Belarus: Gomel

ncbi_organism_name: Corynebacterium diphtheriae bv. mitis

ncbi_submitter: Northumbria University


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: USA: Massachusetts

ncbi_organism_name: Enterococcus faecalis


ncbi_isolation_source: flour/flour products

ncbi_organism_name: Escherichia coli

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_organism_name: Chthoniobacterales bacterium

ncbi_submitter: East China Normal University


ncbi_country: Spain

ncbi_isolation_source: leaves

ncbi_organism_name: Micromonospora cabrerizensis

ncbi_submitter: Universidad de Salamanca


ncbi_assembly_name: gabuh8907 v01

ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii UH8907

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Australia: Brisbane

ncbi_isolation_source: feces


ncbi_country: Switzerland: Mt Terri URL; St-Ursanne

ncbi_isolation_source: Opalinus Clay rock porewater BRC-3 borehole

ncbi_organism_name: Sphingomonadales bacterium BRH_c42

ncbi_submitter: EPFL


ncbi_organism_name: Helicobacter trogontum

ncbi_submitter: University of Antwerp, Belgium


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: Cleanroom

ncbi_organism_name: Cytobacillus oceanisediminis

ncbi_strain_identifiers: CFPSW 5.3

ncbi_submitter: Jet Propulsion Laboratory


ncbi_isolation_source: saline water (ENVO:00002010); including plankton (ENVO:xxxxxxxx)

ncbi_organism_name: Flavobacteriaceae bacterium UBA2674


ncbi_country: South Korea

ncbi_isolation_source: soil

ncbi_organism_name: Levilactobacillus brevis

ncbi_submitter: Dankook University


ncbi_country: Thailand

ncbi_isolation_source: Rectal swab

ncbi_organism_name: Shigella boydii

ncbi_submitter: JCVI


ncbi_country: USA: Maywood; IL

ncbi_isolation_source: urine

ncbi_submitter: Loyola University Chicago


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: bacterium

ncbi_submitter: Portland State University


ncbi_country: Switzerland

ncbi_isolation_source: Raw milk cheese

ncbi_submitter: Agroscope


ncbi_country: China: Shenzhen

ncbi_organism_name: Ruminococcus sp. AF31-8BH

ncbi_submitter: BGI


ncbi_organism_name: Phormidiaceae cyanobacterium CTOTU46636


ncbi_assembly_name: freshwater MAG --- KT1_bin-820

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Bacteroidota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__environmental samples;s__uncultured Bacteroidota bacterium


ncbi_country: Germany: Cologne

ncbi_isolation_source: root

ncbi_organism_name: Agromyces sp. Root1464

ncbi_submitter: Max Planck Institute for Plant Breeding Research


ncbi_country: Mozambique

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Texas A&M University - Corpus Christi


ncbi_country: USA: Indiana

ncbi_isolation_source: Hospital sink

ncbi_organism_name: Legionella sp. 515359

ncbi_submitter: Phigenics LLc


ncbi_country: China: People s Republic of China; Yannan Province

ncbi_organism_name: Yimella lutea

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Phyllobacterium sp. CCNWLW183

ncbi_submitter: Northwest A&F University


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: uncultured Eubacterium sp.


ncbi_organism_name: Candidatus Limnocylindrales bacterium

ncbi_submitter: Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Chloroflexota;c__Candidatus Limnocylindria;o__Candidatus Limnocylindrales;x__unclassified Candidatus Limnocylindrales;s__Candidatus Limnocylindrales bacterium


ncbi_organism_name: uncultured Elusimicrobium sp.


ncbi_isolation_source: sheep gut metagenome

ncbi_submitter: EMG


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_country: USA: Boston

ncbi_isolation_source: Commercial building tap; chloraminated drinking water

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Northeastern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: addis ababa university


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: Candidatus Aphodenecus pullistercoris

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Spirochaetota;c__Spirochaetia;o__Spirochaetales;x__Spirochaetales incertae sedis;g__Candidatus Aphodenecus;s__Candidatus Aphodenecus pullistercoris


ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: Institut Pasteur


ncbi_assembly_name: IMG-taxon 2724679687 annotated assembly

ncbi_organism_name: Flavobacterium resistens

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_isolation_source: nasopharynx


ncbi_isolation_source: bodily fluid

ncbi_organism_name: Staphylococcus aureus USA_1

ncbi_submitter: Broad Institute


ncbi_country: Peru: Lima

ncbi_isolation_source: stool

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Instituto Nacional de Salud


ncbi_country: Australia: NSW; Port Stephens

ncbi_organism_name: Vibrio chagasii

ncbi_submitter: NSW Department of Primary Industries


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: Streptococcus salivarius


ncbi_organism_name: Staphylococcus warneri

ncbi_submitter: Yale University


ncbi_organism_name: Pararcticibacter sp.


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: Technical University of Denmark


ncbi_organism_name: uncultured Actinomycetota bacterium

ncbi_submitter: Center for Microbial Communities

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;x__environmental samples;s__uncultured Actinomycetota bacterium


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_organism_name: Ralstonia solanacearum

ncbi_strain_identifiers: GBBC 666

ncbi_submitter: Flanders Research Institute for Agriculture, Fisheries and Food (ILVO)


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Roseiflexaceae bacterium

ncbi_submitter: University of Michigan


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: uncultured Acidobacteriaceae bacterium


ncbi_organism_name: uncultured Gallionella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus capitis

ncbi_submitter: Chang Gung Memorial Hospital


ncbi_organism_name: Escherichia coli

ncbi_submitter: Lund University


ncbi_organism_name: Streptomyces sp. NPDC056227

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Acinetobacter nosocomialis

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_organism_name: Candidatus Alistipes avistercoris


ncbi_organism_name: Alistipes onderdonkii


ncbi_organism_name: Streptococcus dysgalactiae

ncbi_submitter: Mississippi State University; College of Veterinary Medicine


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Watershed Function Science Focus Area


ncbi_organism_name: Flavonifractor plautii


ncbi_organism_name: Pseudalkalibacillus sp. R45

ncbi_submitter: Ondokuz Mayis University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: Puerto Rico: CEIBA

ncbi_isolation_source: soil

ncbi_organism_name: Burkholderia ubonensis

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: honeybee metagenome

ncbi_organism_name: Bifidobacterium asteroides

ncbi_submitter: EMG


ncbi_country: China: Shantou; Guangdong

ncbi_isolation_source: marine

ncbi_organism_name: Sulfitobacter sp. PR48

ncbi_submitter: Shantou University


ncbi_organism_name: Dermatophilaceae bacterium

ncbi_submitter: The University of Hong Kong


ncbi_isolation_source: sputum

ncbi_organism_name: Neisseria sp. HMSC055H02

ncbi_submitter: The Genome Institute at Washington University


ncbi_country: USA: Pittsburgh

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University of Pittsburgh


ncbi_isolation_source: Distal colon

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Japan

ncbi_organism_name: Escherichia coli O121

ncbi_submitter: Department of Bacteriology, National Institute of Infectious Diseases


ncbi_isolation_source: pig gut metagenome


ncbi_country: Canada: Toronto

ncbi_organism_name: Burkholderia multivorans

ncbi_submitter: University of Toronto


ncbi_country: USA

ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_submitter: Xinjiang agricultural university

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_organism_name: Cellulomonadaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_country: United Kingdom

ncbi_isolation_source: food

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_isolation_source: aspirate l hip

ncbi_organism_name: Streptococcus sp. HMSC076H09


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus W65910

ncbi_submitter: Broad Institute


ncbi_country: Sweden: Orebro

ncbi_isolation_source: cornea

ncbi_organism_name: Corynebacterium macginleyi

ncbi_submitter: Aarhus University


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: Lachnoclostridium phocaeense

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_country: Antarctica: Horseshoe Island

ncbi_isolation_source: rock

ncbi_organism_name: Micrococcus sp. H39-S4

ncbi_submitter: Ondokuz Mayis University


ncbi_organism_name: Clostridium saudiense

ncbi_submitter: Washington University in Saint Louis


ncbi_assembly_name: Unknown Proteobacterium AM_0256

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Universidade Federal de Sao Carlos - UFSCar


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_organism_name: Streptomyces tibetensis

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Translational Health Science and Technology Institute


ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_country: China: Beijing

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: Beijing Ditan Hospital, Capital Medical University


ncbi_isolation_source: sugarcane dry straw soil

ncbi_organism_name: Herbaspirillum sp.

ncbi_submitter: UNESP-FCAV


ncbi_country: Russia

ncbi_isolation_source: Not known

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Bifidobacterium bifidum

ncbi_submitter: Technical University of Munich


ncbi_organism_name: uncultured Azospirillaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_country: USA: Georgia

ncbi_isolation_source: human feces

ncbi_organism_name: Alistipes onderdonkii

ncbi_submitter: Georgia Institute of Technology


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Faecalibacillus intestinalis

ncbi_submitter: RWTH Aachen University Hospital


ncbi_country: USA:New York; Inwood

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus


ncbi_country: United Kingdom: Kent

ncbi_organism_name: Pseudomonas syringae

ncbi_submitter: NIAB East Malling Research


ncbi_country: India: Pimpri

ncbi_organism_name: Streptomyces purpurogeneiscleroticus

ncbi_strain_identifiers: NRRL B-2952

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Gemmatimonadales bacterium

ncbi_submitter: Zhejiang University


ncbi_country: Iceland

ncbi_isolation_source: Hot spring water

ncbi_organism_name: Caldicellulosiruptor acetigenus

ncbi_submitter: North Carolina State University


ncbi_isolation_source: feces

ncbi_organism_name: uncultured Allobaculum sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Gallibacterium anatis

ncbi_submitter: Clinic for Poultry and Fish Medicine - Vetmeduni Vienna


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Alteromonas sp.

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus casseliflavus

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_country: China: Guangdong

ncbi_isolation_source: liver

ncbi_organism_name: Pasteurella multocida

ncbi_submitter: South China Agricultural University


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: West China hospital of Sichuan university


ncbi_country: China: Jinhua

ncbi_isolation_source: bile

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University


ncbi_country: Colombia: Ibague

ncbi_submitter: Universidad El Bosque


ncbi_country: Brazil

ncbi_submitter: South American Mycobacterium bovis WGS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium;x__Mycobacterium tuberculosis complex;s__Mycobacterium tuberculosis;x__Mycobacterium tuberculosis variant bovis;x__Mycobacterium tuberculosis variant bovis AN5


ncbi_isolation_source: Freshwater lake

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: lake water

ncbi_organism_name: Comamonadaceae bacterium


ncbi_organism_name: Mycobacterium tuberculosis T92

ncbi_submitter: Broad Institute


ncbi_organism_name: uncultured Turicibacter sp.


ncbi_country: Thailand: Songkhla

ncbi_isolation_source: sputum

ncbi_submitter: Prince of Songkla University


ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: University of Zurich


ncbi_country: South Korea:Seoul

ncbi_isolation_source: Nuruk

ncbi_organism_name: Fructilactobacillus sanfranciscensis

ncbi_submitter: SPC Group


ncbi_organism_name: Candidatus Pseudothioglobus singularis

ncbi_submitter: Bigelow Laboratory for Ocean Sciences

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;f__Candidatus Pseudothioglobaceae;g__Candidatus Pseudothioglobus;s__Candidatus Pseudothioglobus singularis


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: stanford university school of medicine


ncbi_country: Tunisia: El Alia

ncbi_isolation_source: soil near greenhouses; ph 8.3

ncbi_organism_name: Microvirga tunisiensis

ncbi_submitter: UPM


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiales bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: China: Jiangsu

ncbi_isolation_source: lung

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Yangzhou university


ncbi_country: USA: Walter Reed Army Medical Center

ncbi_isolation_source: blood

ncbi_submitter: Miami University


ncbi_country: China: Nanjing

ncbi_isolation_source: Infected pancreatic necrosis

ncbi_submitter: Affiliated Jinling Hospital, Medical School of Nanjing University


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_country: Estonia: Harjumaa

ncbi_isolation_source: caecal content

ncbi_organism_name: Enterococcus faecium


ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Universidad de Sonora


ncbi_organism_name: bacterium

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: uncultured Alistipes sp.


ncbi_country: USA: Danvile; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Verrucomicrobiota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: University hospital Lubeck


ncbi_assembly_name: Salmonella enterica CVM N51293 v1.0

ncbi_country: USA: NM

ncbi_isolation_source: Ground Beef

ncbi_submitter: FDA

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Mbandaka


ncbi_isolation_source: eye

ncbi_organism_name: Vibrio harveyi

ncbi_submitter: Kochi University


ncbi_organism_name: Paramuribaculum intestinale


ncbi_country: Russia: Perm Region; Cherdyn

ncbi_organism_name: Borreliella bavariensis

ncbi_submitter: Bavarian Health and Food Safety Authority


ncbi_isolation_source: phycosphere of toxic marne Dinoflagellate

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Zhejiang Ocean University


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Acetobacter cibinongensis

ncbi_submitter: Kinki University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_organism_name: Collinsella aerofaciens


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Planctomycetota bacterium

ncbi_submitter: University of Gothenburg


ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Paludibacteraceae bacterium

ncbi_submitter: Embrapa Pecuaria Sudeste


ncbi_organism_name: Bacteroidaceae bacterium


ncbi_organism_name: Salmonella sp. 741265129_HBA

ncbi_submitter: TEL AVIV MEDICAL CENTER


ncbi_submitter: Fondazione IRCCS Policlinico San Matteo


ncbi_organism_name: uncultured Verrucomicrobiae bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Verrucomicrobiia;x__environmental samples;s__uncultured Verrucomicrobiae bacterium


ncbi_organism_name: uncultured Planctomycetia bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Planctomycetia;x__environmental samples;s__uncultured Planctomycetia bacterium


ncbi_submitter: University of East Anglia


ncbi_organism_name: Escherichia coli

ncbi_submitter: Maynooth University


ncbi_organism_name: Sinorhizobium fredii

ncbi_submitter: Beijing Forestry University


ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tsinghua University