ncbi_country: USA: Boston; MA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus M0183

ncbi_submitter: Broad Institute


gtdb_representative: f

gtdb_type_species_of_genus: f

ncbi_assembly_level: Scaffold

ncbi_genome_category: derived from metagenome

ncbi_genome_representation: full

ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


gtdb_representative: t

ncbi_assembly_level: Contig

ncbi_country: USA: Sanford Underground Research Facility; Lead SD; Deep Mine Microbial Observatory (DeMMO)

ncbi_isolation_source: fracture fluid

ncbi_organism_name: Candidatus Omnitrophota bacterium

ncbi_submitter: Northwestern University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Candidatus Omnitrophota;x__unclassified Candidatus Omnitrophota;s__Candidatus Omnitrophota bacterium


ncbi_country: Nicaragua: Managua

ncbi_isolation_source: antrum; stomach

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University of Gothenburg


ncbi_country: Russia: Uzon Caldera; Kamchatka; Zavarzin hot spring

ncbi_isolation_source: hot spring

ncbi_organism_name: Caldisericum exile

ncbi_submitter: Laetitia Wilkins's shared submissions


ncbi_organism_name: Escherichia coli

ncbi_submitter: USDA-ARS-USNPRC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: France

ncbi_organism_name: Francisella tularensis

ncbi_submitter: ANSES


ncbi_country: Ireland

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: USA

ncbi_isolation_source: lung

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics


ncbi_country: USA: MA

ncbi_isolation_source: shrimp

ncbi_submitter: FDA/CFSAN


ncbi_country: Montenegro

ncbi_isolation_source: environmental

ncbi_organism_name: Lactococcus petauri

ncbi_submitter: University of Donja Gorica


ncbi_organism_name: Micromonospora tulbaghiae

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Spain: Granada

ncbi_isolation_source: urine

ncbi_submitter: Hospital Virgen Macarena


ncbi_assembly_name: BPY

ncbi_country: Australia

ncbi_isolation_source: clinical isolate

ncbi_organism_name: Burkholderia pseudomallei MSHR733

ncbi_submitter: Los Alamos National Laboratory


ncbi_isolation_source: Faeces

ncbi_organism_name: Bifidobacterium pseudolongum subsp. globosum


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent: Solids-removed thin stillage fed; 6 d SRT; 35C; pH 5.5

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: DOE Joint Genome Institute


ncbi_isolation_source: Foregut Rimicaris exoculata metagenome

ncbi_organism_name: uncultured Mycoplasmataceae bacterium

ncbi_submitter: The French Research Institute for Exploitation of the Sea


ncbi_isolation_source: sediment

ncbi_organism_name: Francisella tularensis subsp. novicida

ncbi_submitter: Northern Arizona University


ncbi_isolation_source: Proximal colon

ncbi_organism_name: Bacteroides thetaiotaomicron

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Rikenellaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_assembly_level: Complete Genome

ncbi_organism_name: Lacticaseibacillus paracasei

ncbi_submitter: University of Life Sciences in Lublin


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: China: Guangxi; Wuyi

ncbi_organism_name: Candidatus Saccharimonadota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharimonadota bacterium


ncbi_country: USA: Angelo Coast Range Reserve; CA

ncbi_isolate: gp6 AA46

ncbi_isolation_source: meadow soil

ncbi_organism_name: Acidobacteriota bacterium

ncbi_strain_identifiers: gp6 AA46

ncbi_submitter: Jill Banfield's Lab at Berkeley


ncbi_submitter: Institut Pasteur


ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolate: AOP5_B1_surf _bin _17

ncbi_organism_name: Brevibacterium aurantiacum

ncbi_strain_identifiers: AOP5_B1_surf _bin _17

ncbi_submitter: Genoscope


ncbi_organism_name: Terriglobia bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: Steroidobacteraceae bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pantoea agglomerans

ncbi_submitter: University of Georgia


ncbi_organism_name: uncultured Lishizhenia sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Evtepia gabavorous

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Peribacillus frigoritolerans

ncbi_submitter: Institute of Agrophysics, Polish Academy of Sciences


ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Sulfurimonas sp.

ncbi_submitter: University of Rhode Island


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Southern University of Science and Technology


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE2

ncbi_isolation_source: lake water

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: University of Michigan

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: uncultured Cytophagia bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Cytophagia;x__environmental samples;s__uncultured Cytophagia bacterium


ncbi_organism_name: Rickettsiales bacterium

ncbi_submitter: Marine Biological Laboratory


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital of Wenzhou Medical University


ncbi_country: Antarctica: Mackay Glacier regions

ncbi_isolation_source: mineral soil

ncbi_organism_name: Thermoleophilaceae bacterium

ncbi_submitter: Monash University


ncbi_isolation_source: feces

ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Senftenberg


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus


ncbi_country: USA: WA

ncbi_organism_name: Lacticaseibacillus casei

ncbi_submitter: University of Washington


ncbi_organism_name: Bacillus anthracis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Kocuria sp.


ncbi_organism_name: Xanthomonas sacchari

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_country: USA: Montana

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Broad Institute


ncbi_organism_name: Spiroplasma syrphidicola EA-1

ncbi_refseq_category: reference genome

ncbi_submitter: Academia Sinica

ncbi_type_material_designation: assembly from type material


ncbi_organism_name: Stenotrophomonas sp. BIGb0135

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: United Kingdom

ncbi_isolation_source: Tonsil

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Escherichia coli

ncbi_submitter: State University of Londrina


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: EMG


ncbi_country: China: Beijing

ncbi_isolation_source: sludge from two different bioreactors; each one run at a different temprature (R1 at 35 C; R2 at 25 C); artificial municipal wastewater

ncbi_organism_name: Candidatus Jettenia sp. AMX1

ncbi_submitter: Peking University

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;s__

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Jettenia;x__unclassified Candidatus Jettenia;s__Candidatus Jettenia sp. AMX1


ncbi_country: France

ncbi_isolation_source: vegetables

ncbi_organism_name: Clostridium sporogenes

ncbi_submitter: University of Surrey


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Atopobiaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Rothia mucilaginosa


ncbi_country: China: Enshi

ncbi_isolation_source: soil

ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: Hubei Minzu University


ncbi_organism_name: Lactococcus cremoris

ncbi_submitter: University of Copenhagen


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: Roseburia hominis

ncbi_submitter: Washington University in Saint Louis


ncbi_isolation_source: human gut

ncbi_organism_name: Desulfitobacterium hafniense


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Post Graduate Institute of Medical Education and Research, Chandigarh


ncbi_organism_name: Helicobacter pylori oki128

ncbi_submitter: Okinawa Institute of Advanced Sciences


ncbi_organism_name: uncultured Parasutterella sp.


ncbi_country: USA: NC

ncbi_isolation_source: Core; Other Plant

ncbi_organism_name: Bacillus cereus

ncbi_submitter: UNC Chapel Hill


ncbi_organism_name: Corynebacterium sp. MC3

ncbi_submitter: URMITE


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Escherichia coli

ncbi_submitter: Sir Run Run Shaw Hospital, School of Medicine, Zhejiang University


ncbi_country: USA: MA; Provincetown

ncbi_isolation_source: native cranberry bog soil

ncbi_organism_name: Chromobacterium subtsugae

ncbi_submitter: Midwestern University


ncbi_isolation_source: wastewater treatment plant

ncbi_organism_name: Flavobacterium cerinum

ncbi_submitter: Northeast Normal University


ncbi_country: Russia: Moscow

ncbi_isolation_source: sputum

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: SRCAMB


ncbi_country: China: Guangxi

ncbi_submitter: Northwest A&F University


ncbi_country: USA: IA

ncbi_organism_name: Listeria seeligeri

ncbi_submitter: Cornell University


ncbi_assembly_name: freshwater MAG --- AM-lipid-02-D1_bin-0979

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Actinomycetes bacterium

ncbi_submitter: BILS


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Planctomyces sp. SH-PL62

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_country: China

ncbi_isolation_source: hospital

ncbi_organism_name: Providencia sp. PROV141

ncbi_submitter: Beijing Institute of Microbiology and Epidemiology


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: Centro de Astrobiologia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_country: Israel

ncbi_isolation_source: blood

ncbi_submitter: Ariel University


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: EMG


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_submitter: Faculte de Medecine, Universite Paris-Sud


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: USA: Fort Lauderdale Research & Education Center; Florida

ncbi_isolation_source: termite gut

ncbi_organism_name: Puniceicoccales bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_organism_name: uncultured Thermodesulfovibrio sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_name: Rumen uncultured genome RUG10023

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_organism_name: uncultured Spirochaetales bacterium


ncbi_assembly_name: IMG-taxon 2609459724 annotated assembly

ncbi_organism_name: Variovorax sp. OK605

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: Brazil: Sao Paulo

ncbi_isolation_source: Larva

ncbi_organism_name: Bacillus sp. SDLI1

ncbi_submitter: Harvard Medical School

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__unclassified Bacillus (in: firmicutes);s__Bacillus sp. SDLI1


ncbi_country: USA: Morrow County; Oregon

ncbi_organism_name: Rathayibacter sp. AY1E2

ncbi_submitter: Oregon State University


ncbi_organism_name: Anaerotignum sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Lactobacillus johnsonii


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Candidatus Yanofskybacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Yanofskyibacteriota;x__unclassified Candidatus Yanofskybacteria;s__Candidatus Yanofskybacteria bacterium


ncbi_isolation_source: vagina

ncbi_organism_name: Corynebacterium tuscaniense DNF00037

ncbi_submitter: J. Craig Venter Institute


gtdb_type_species_of_genus: t

ncbi_organism_name: Thiopseudomonas denitrificans

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA: Chesapeake Bay

ncbi_isolation_source: Chesapeake Bay

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: Clemson University


ncbi_country: USA: VA

ncbi_organism_name: Shigella boydii

ncbi_strain_identifiers: DMB SH134

ncbi_submitter: FDA Center for Food Safety and Applied Nutrition


ncbi_isolation_source: Environmental; soil

ncbi_organism_name: Burkholderia lata

ncbi_submitter: CARDIFF SCHOOL OF BIOSCIENCES


ncbi_organism_name: Pseudomonadales bacterium

ncbi_submitter: Leibniz-Institut DSMZ - German Collection of Microorganisms and Cell Cultures GmbH


ncbi_assembly_name: Rumen uncultured genome RUG12976


ncbi_country: Italy: Molveno (TN)

ncbi_isolation_source: water

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: Division of Molecular Biology, Immunology and Experimental Medicine, Army Medical Center


ncbi_organism_name: Bradyrhizobium ivorense

ncbi_submitter: Biology Centre CAS


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Acetatifactor sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Czech Republic: Moravia

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Palacky University Olomouc


ncbi_country: USA: Prado Wetlands; Corona; CA

ncbi_isolation_source: Wetland A3

ncbi_organism_name: Raineya sp.

ncbi_submitter: NSF Engineering Research Center for Re-Inventing the Nation's Urban Water Infrastructure


ncbi_country: Peru

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: SC


ncbi_country: South Korea: Jeongbang Waterfall

ncbi_isolation_source: waterfall

ncbi_organism_name: Lewinella sp. JB7

ncbi_submitter: Dongguk university


ncbi_isolation_source: marine water

ncbi_organism_name: uncultured SAR86 cluster bacterium

ncbi_submitter: WOODS HOLE OCEANOGRAPHIC INSTITUTION

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;x__Gammaproteobacteria incertae sedis;x__SAR86 cluster;x__environmental samples;s__uncultured SAR86 cluster bacterium


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi

ncbi_submitter: LNCC


ncbi_organism_name: uncultured Gemmatimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: China: Guizhou; Zhijin

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_country: State of Palestine: West Bank

ncbi_isolation_source: State of Palestine: West Bank

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Swiss Tropical and Public Health Institute


ncbi_country: Germany

ncbi_isolation_source: water kefir

ncbi_organism_name: Liquorilactobacillus nagelii

ncbi_submitter: Technische Universitaet Muenchen


ncbi_country: USA: Irvine; CA

ncbi_organism_name: Staphylococcus aureus T26751

ncbi_submitter: Broad Institute


ncbi_country: Netherlands

ncbi_isolation_source: dairy environment

ncbi_organism_name: Bacillus licheniformis

ncbi_submitter: University of Groningen


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Oscillospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_country: USA

ncbi_isolation_source: blood

ncbi_organism_name: Acinetobacter baumannii UH14508

ncbi_submitter: J. Craig Venter Institute


ncbi_organism_name: Rubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Flavobacteriales bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: Wujia chipingensis

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: France: Besancon

ncbi_isolation_source: Catheter

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: University Hospital of Besancon


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured bacterium

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_country: China: Shenzhen

ncbi_isolation_source: activated sludge

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: HUN-REN Bilogical Research Centre


ncbi_organism_name: Gardnerella sp. Marseille-Q9691

ncbi_submitter: IHU Mediterranee Infection


ncbi_organism_name: [Ruminococcus] lactaris

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Aeromonas dhakensis

ncbi_submitter: University of Maryland, School of Medicine


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: uncultured Rhodocyclaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: University of Cadiz


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: EPFL


ncbi_organism_name: Streptomyces cyaneofuscatus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: uncultured Chthoniobacter sp.


ncbi_country: Uganda: Stanley glacier

ncbi_isolation_source: rock

ncbi_organism_name: Bacteroidota bacterium


ncbi_country: Canada: Ontario

ncbi_isolation_source: dairy cattle manure digester

ncbi_organism_name: Escherichia coli

ncbi_submitter: JPIAMR ARMIS


ncbi_country: United Kingdom

ncbi_isolation_source: Blood

ncbi_submitter: SC


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Fidelibacterota bacterium

ncbi_submitter: European Bioinformatics Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Fidelibacterota;x__environmental samples;s__uncultured Fidelibacterota bacterium


ncbi_organism_name: Thiomonas arsenitoxydans

ncbi_submitter: Genoscope CEA


ncbi_country: Cameroon: Ebogo II; Mbalmayo

ncbi_isolation_source: termite gut

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Candidatus Margulisiibacteriota;x__unclassified Candidatus Margulisiibacteriota;s__Candidatus Margulisiibacteriota bacterium


ncbi_country: Canada: Alberta

ncbi_isolation_source: Sewage influent

ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Lethbridge Research and Development Centre


ncbi_organism_name: Pasteurella multocida

ncbi_submitter: University of Melbourne


ncbi_isolation_source: lake water

ncbi_submitter: University of Zurich


ncbi_country: Thailand

ncbi_submitter: German Federal Institute for Risk Assessment


ncbi_country: China: Yongxing Island

ncbi_isolation_source: marine sediments

ncbi_organism_name: Phytohabitans maris

ncbi_submitter: Chinese Academy of Tropical Agriculture Sciences


ncbi_country: Pacific Ocean: Lau Basin

ncbi_isolation_source: Kilo Moana Hydrothermal plume 60m

ncbi_submitter: University of Wisconsin-Madison

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Candidatus Lambdaproteobacteria;x__unclassified Candidatus Lambdaproteobacteria;s__Candidatus Lambdaproteobacteria bacterium


ncbi_organism_name: Lachnospira eligens

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Anaerolineales bacterium

ncbi_submitter: The Microflora Danica Consortium


ncbi_assembly_name: IMG-taxon 2671180090 annotated assembly

ncbi_organism_name: Streptomyces sp. 2231.1

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_country: USA: Kentucky

ncbi_isolation_source: fermented sausage

ncbi_organism_name: Pediococcus pentosaceus

ncbi_submitter: ALLTECH SARL


ncbi_country: China: Tielong; Guangdong Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: South china normal university


ncbi_country: United Kingdom: London

ncbi_isolation_source: not available: to be reported later

ncbi_organism_name: Streptococcus pyogenes


ncbi_submitter: Walter Reed Army Institute of Research


ncbi_organism_name: Zeaxanthinibacter enoshimensis

ncbi_submitter: Second Institute Of Oceanography,MNR


ncbi_country: Arctic Ocean: Arctic deep sea; Hakon Mosby Mud Volcano

ncbi_isolation_source: sediment

ncbi_organism_name: Caldiserica bacterium UBA646

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__Caldisericota/Cryosericota group;p__Caldisericota;x__unclassified Caldisericota;s__Caldiserica bacterium UBA646


ncbi_organism_name: Pandoraea pneumonica

ncbi_submitter: Hainan General Hospital


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Escherichia coli

ncbi_submitter: New England Biolabs


ncbi_assembly_name: freshwater MAG --- LinL5_bin-0481

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: BILS

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_country: China: Guangdong

ncbi_isolation_source: pancreas of a zebra

ncbi_organism_name: Wohlfahrtiimonas chitiniclastica

ncbi_strain_identifiers: BM-Y

ncbi_submitter: Changchun Veterinary Research Institute


ncbi_isolation_source: human blood of bacteremia patient

ncbi_organism_name: Bacillus cereus

ncbi_submitter: Division of Infection and Immunity, Research Center for Zoonosis Control, Hokkaido University


ncbi_country: Colombia: Bogota

ncbi_isolation_source: Biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: Universidad de Ciencias Aplicadas y Ambientales UDCA


ncbi_country: Lebanon: North

ncbi_isolation_source: blood

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: American University of Beirut


ncbi_isolation_source: Freshwater lake

ncbi_organism_name: Rhizobium sp. Q54

ncbi_submitter: BIOLOGY CENTRE ASCR, V.V.I., INSTITUTE OF HYDROBIO


ncbi_organism_name: Lactobacillus acidophilus

ncbi_strain_identifiers: NSL

ncbi_submitter: Agricultural Research Council


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Indian Veterinary Research Institute


ncbi_isolation_source: marine

ncbi_organism_name: Microbacterium sp.


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: France

ncbi_organism_name: Staphylococcus pettenkoferi

ncbi_submitter: INSERM U1047


ncbi_organism_name: Candidatus Kuenenia stuttgartensis

ncbi_taxonomy: d__Bacteria;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Planctomycetota;c__Candidatus Brocadiia;o__Candidatus Brocadiales;f__Candidatus Brocadiaceae;g__Candidatus Kuenenia;s__Candidatus Kuenenia stuttgartensis


ncbi_country: South Korea

ncbi_isolation_source: Retail raw chicken

ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Seoul National University


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8888

ncbi_submitter: The Xanthomonas Threats project


ncbi_country: USA

ncbi_organism_name: Burkholderia thailandensis H0587

ncbi_submitter: US Army Edgewood Chemical Biological Center


ncbi_organism_name: Jeotgalibaca porci

ncbi_submitter: Yunnan Agricultural University


ncbi_isolation_source: cold seep

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources


ncbi_organism_name: Parabacteroides merdae

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University


ncbi_country: USA: Chicago

ncbi_isolation_source: Blood

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Australia: Shark Bay; Hameline Pool

ncbi_isolation_source: microbial mat from hypersaline water environment

ncbi_submitter: University of New South Wales

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;x__unclassified Candidatus Magasanikbacteria;s__Candidatus Magasanikiibacteriota bacterium


ncbi_country: Chile: Region de Aysen

ncbi_organism_name: Piscirickettsia salmonis

ncbi_submitter: Leibniz Institute DSMZ


ncbi_country: Ireland

ncbi_isolation_source: Cattle/Soil

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: University College Dublin


ncbi_country: China: Beijing

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_isolation_source: soil

ncbi_organism_name: Serratia marcescens

ncbi_submitter: Department of Material and Environmental Chemistry, Graduate School of Engineering, Utsunomiya University


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Porphyromonas sp.

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: Candidatus Zhuqueibacter tengchongensis

ncbi_submitter: Sun Yat-Sen University

ncbi_taxonomy: d__Bacteria;p__;c__;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Zhuqueibacter;s__Candidatus Zhuqueibacter tengchongensis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Candidatus Zhuqueibacterota;o__Candidatus Zhuqueibacterales;f__Candidatus Zhuqueibacteraceae;g__Candidatus Zhuqueibacter;s__Candidatus Zhuqueibacter tengchongensis


ncbi_assembly_name: Rumen uncultured genome RUG12540

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Hangzhou

ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella pneumoniae

ncbi_strain_identifiers: D324ATCC BAA-1705

ncbi_submitter: The First Affiliated Hospital, Zhejiang University School of Medicine


ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_organism_name: Mycobacterium tuberculosis

ncbi_strain_identifiers: Bir 289

ncbi_submitter: SC


ncbi_country: USA: North Carolina; Durham

ncbi_isolation_source: environmental

ncbi_organism_name: Staphylococcus haemolyticus

ncbi_submitter: BGI


ncbi_organism_name: Candidatus Phytoplasma australasiaticum

ncbi_submitter: Agriculture Victoria

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Mycoplasmatota;c__Mollicutes;o__Acholeplasmatales;f__Acholeplasmataceae;g__Candidatus Phytoplasma;x__16SrII (Peanut WB group);s__Candidatus Phytoplasma australasiaticum


ncbi_country: China

ncbi_isolation_source: anal swab

ncbi_submitter: The Second Affiliated Hospital of Zhejiang University School of Medicine


ncbi_country: Mozambique

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides xylanisolvens

ncbi_submitter: Georgia Institute of Technology


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_organism_name: Streptococcus pneumoniae


ncbi_organism_name: Marinitoga litoralis

ncbi_submitter: DOE Joint Genome Institute


ncbi_organism_name: Streptomyces sp. NPDC012842

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Brazil: Rio de Janeiro

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Sulfitobacter sp.

ncbi_submitter: University of Southern California


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: EMG


ncbi_country: France: Tours

ncbi_isolation_source: infection

ncbi_organism_name: Streptococcus agalactiae

ncbi_submitter: Genomic Research Laboratory (GRL)


ncbi_organism_name: uncultured Acidimicrobiaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_country: USA: Georgia;Atlanta

ncbi_isolation_source: sputum

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Emory University


ncbi_country: USA: OH

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia sp. MOD1-EC4560

ncbi_submitter: FDA/CFSAN


ncbi_organism_name: Acidaminobacteraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_organism_name: Marinobacter sp.


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Collinsella sp.


ncbi_country: United Kingdom

ncbi_isolation_source: Brain

ncbi_organism_name: Streptococcus suis

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_isolation_source: sediment collected at a cold seep field

ncbi_organism_name: Nitrincola iocasae

ncbi_submitter: Institute of Oceanology, Chinese Academy of Sciences


ncbi_country: USA

ncbi_isolation_source: Unknown Specimen Type

ncbi_organism_name: Escherichia coli

ncbi_submitter: Food and Water Safety Consortium


ncbi_country: India: Tripura

ncbi_strain_identifiers: Gramapriya PO10

ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_country: Pacific Ocean: Brothers volcano

ncbi_isolation_source: marine hydrothermal vent

ncbi_organism_name: Aquificaceae bacterium

ncbi_submitter: Portland State University


ncbi_country: USA: Pittsburgh; Pennsylvania

ncbi_isolation_source: Rectal Swab

ncbi_organism_name: Enterococcus faecium

ncbi_submitter: University of Pittsburgh


ncbi_country: USA: AR

ncbi_submitter: University of Arkansas for Medial Sciences


ncbi_organism_name: Arthrobacter sp. 21a14

ncbi_submitter: INRAE


ncbi_isolation_source: agricultural environmental material

ncbi_organism_name: Staphylococcus argenteus

ncbi_submitter: Bacteriology, Microbiology, Osaka Institute of Public Health


ncbi_organism_name: Streptomyces sp. NPDC017102

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Pacific Ocean: South Pacific Ocean

ncbi_isolation_source: marine water sample

ncbi_organism_name: Fidelibacterota bacterium

ncbi_submitter: Tara Oceans Consortium


ncbi_organism_name: uncultured Syntrophomonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Bacillus wiedmannii

ncbi_submitter: State Research Center for Applied Microbiology and Biotechnology


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidade de Sao Paulo


ncbi_submitter: Nanjing Agricultural University


ncbi_submitter: National Centre for Infectious Diseases


ncbi_organism_name: Agathobacter rectalis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Vicinamibacterales bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis

ncbi_submitter: SRCAMB


ncbi_organism_name: Eubacteriales bacterium

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Psychrobacter sp. NPDC064578


ncbi_organism_name: uncultured Aquiluna sp.

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Micrococcales;f__Microbacteriaceae;x__Luna cluster;x__Luna-1 subcluster;g__Aquiluna;x__environmental samples;s__uncultured Aquiluna sp.


ncbi_organism_name: Hyphococcus sp.

ncbi_submitter: Tsinghua University


ncbi_country: Panama: Bocas del Toro; Punta Caracol

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: Stony Brook University


ncbi_organism_name: Frisingicoccus sp.


ncbi_country: Russia: Kulunda Steppe

ncbi_isolation_source: hypersaline soda lake sediment

ncbi_organism_name: PVC group bacterium

ncbi_submitter: Institute for Biodiversity and Ecosystem dynamics, Faculty of Science, University of Amsterdam

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;x__unclassified PVC group;s__PVC group bacterium


ncbi_isolation_source: human feces

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: stanford university school of medicine

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_isolation_source: perirectal

ncbi_organism_name: Acinetobacter baumannii 1475764

ncbi_submitter: Institute for Genome Sciences


ncbi_organism_name: Edwardsiella tarda

ncbi_submitter: Guangdong Technion Israel Institution of Technology


ncbi_organism_name: Pseudarthrobacter sp. LT1

ncbi_submitter: Chinese Academy of Agricultural Sciences


ncbi_isolation_source: feces

ncbi_organism_name: Anaerobutyricum hallii

ncbi_submitter: SC


ncbi_submitter: Centre for Microbiome Research


ncbi_assembly_level: Chromosome

ncbi_country: Australia: Yorketown; South Australia

ncbi_isolation_source: bacterial gall

ncbi_organism_name: Rathayibacter toxicus

ncbi_submitter: Australian Government’s Cooperative Research Centres Program


ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Texas at Austin


ncbi_country: China: Shanghai

ncbi_organism_name: Shigella flexneri

ncbi_submitter: Institute of Disease Control and Prevention, Academy of Military Medical Sciences


ncbi_country: USA: Stickney; IL

ncbi_isolation_source: mesophilic anaerobic digester

ncbi_organism_name: Candidatus Latescibacterota bacterium

ncbi_submitter: University of Illinois Urbana-Champaign

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Latescibacterota;x__unclassified Candidatus Latescibacterota;s__Candidatus Latescibacterota bacterium


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Odoribacter sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Italy: Emilia Romagna; Casola Valsenio

ncbi_organism_name: Priestia sp. OVS21

ncbi_submitter: University of Florence


ncbi_organism_name: Porphyromonadaceae bacterium UBA7173

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: Delaware

ncbi_strain_identifiers: ATCC 6013

ncbi_submitter: Papoutsakis Research Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;o__Eubacteriales;f__Clostridiaceae;g__Clostridium;s__Clostridium pasteurianum;x__Clostridium pasteurianum DSM 525 = ATCC 6013


ncbi_country: China: Hangzhou

ncbi_isolation_source: stool

ncbi_organism_name: Vibrio parahaemolyticus

ncbi_submitter: Hangzhou Center for Disease Control and Prevention


ncbi_organism_name: uncultured Sutterella sp.


ncbi_organism_name: uncultured Myxococcota bacterium

ncbi_submitter: German Federation for Biological Data

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Myxococcota;x__environmental samples;s__uncultured Myxococcota bacterium


ncbi_country: India: Gulf of Khambhat

ncbi_isolation_source: Pelagic sediment

ncbi_organism_name: Gammaproteobacteria bacterium

ncbi_submitter: Maharaja Krishnakumarsinhji Bhavnagar University


ncbi_country: French Guiana: Petit-Saut

ncbi_isolation_source: P3 gut compartment

ncbi_organism_name: Defluviitaleaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_organism_name: Bacillus cereus

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_country: Russia: Moscow

ncbi_organism_name: Serratia marcescens

ncbi_submitter: RCPCM


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Butyricimonas virosa

ncbi_submitter: BGI-Shenzhen


ncbi_organism_name: Stutzerimonas stutzeri


ncbi_country: Malaysia

ncbi_isolation_source: Endotracheal tube

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Universiti Sultan Zainal Abidin


ncbi_country: Germany

ncbi_organism_name: Nevskia ramosa DSM 11499

ncbi_submitter: DOE Joint Genome Institute

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Nevskiales;f__Nevskiaceae;g__Nevskia;s__Nevskia ramosa;x__Nevskia ramosa DSM 11499


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: India: Near Henry Lawrence island; Andaman Sea

ncbi_isolation_source: mucus

ncbi_organism_name: Psychrobacter pocilloporae

ncbi_submitter: Institute of Life Sciences


ncbi_country: USA: Wisconsin

ncbi_organism_name: Pseudomonas protegens

ncbi_submitter: Medical College of Wisconsin


ncbi_country: China: Shandong

ncbi_submitter: The First Affiliated Hospital, School of Medicine, Zhejiang University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Paratyphi C


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Lachnospiraceae bacterium UBA3638

ncbi_submitter: University of Queensland


ncbi_country: China: Zhejiang; Hangzhou

ncbi_isolation_source: blood

ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Zhejiang university


ncbi_isolation_source: coastal seawater

ncbi_organism_name: Aliiroseovarius sp. xm-a-134

ncbi_submitter: The Chinese University of Hong Kong


ncbi_submitter: SC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_country: United Kingdom

ncbi_isolation_source: farm environment

ncbi_organism_name: Campylobacter coli

ncbi_submitter: INSTITUTE OF FOOD RESEARCH


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: First Affiliated Hospital of Chinese PLA General Hospital

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_isolation_source: homo

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: ZHEJIANG UNIVERSITY


ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Haliscomenobacter sp.

ncbi_submitter: Aalborg University


ncbi_submitter: Gladstone Institutes

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_country: United Kingdom:England

ncbi_organism_name: Staphylococcus aureus


ncbi_organism_name: Eggerthella sp.

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: Brazil

ncbi_isolation_source: swine

ncbi_submitter: Center for Food Safety and Applied Nutrition

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhimurium


ncbi_country: USA: New York

ncbi_isolation_source: fecal sample

ncbi_organism_name: Bifidobacterium breve

ncbi_submitter: University of Chicago


ncbi_country: China: Shanghai

ncbi_isolation_source: feces

ncbi_organism_name: Salmonella enterica

ncbi_submitter: shanghai east hospital


ncbi_organism_name: Parabacteroides goldsteinii

ncbi_submitter: EMG


ncbi_organism_name: Dehalococcoidia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE


ncbi_isolation_source: marine macroalgae

ncbi_organism_name: uncultured Roseibium sp.

ncbi_submitter: marine college, shandong university


ncbi_organism_name: Bdellovibrionales bacterium

ncbi_submitter: EPFL


ncbi_isolation_source: carbuncle-like necrotic site on back of the hand of a 10 year old child

ncbi_organism_name: Bacillus pumilus

ncbi_strain_identifiers: Bonn

ncbi_submitter: Bundeswehr Insitute of Microbiology


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: aquifer sediment

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_40_11


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Enteritidis


ncbi_country: Germany: somewhere in TH

ncbi_organism_name: Acinetobacter pittii

ncbi_submitter: University of Cologne


ncbi_country: China: Hangzhou

ncbi_isolation_source: throat swab

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: The First Affiliated Hospital, Zhejiang University school of Medicine


ncbi_isolation_source: Faeces


ncbi_organism_name: Olsenella sp. AGMB03486

ncbi_submitter: Korea Research Institute of Bioscience and Biotechnology


ncbi_country: China: Shandong; Zhucheng

ncbi_isolation_source: river water

ncbi_submitter: Shandong university


ncbi_country: South Africa: Kwa-Zulu Natal

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: Emory Rollins School of Public Health


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;x__unclassified Parcubacteria group;s__Parcubacteria group bacterium GW2011_GWC1_41_7


ncbi_organism_name: Hyphomicrobiales bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: uncultured Duncaniella sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Malaysia: Perak

ncbi_isolation_source: Ulu Slim Hot Spring

ncbi_organism_name: Sphingomonas hankookensis

ncbi_submitter: University of Malaya


ncbi_country: China: Ningbo city

ncbi_isolation_source: sediment

ncbi_organism_name: Marinicella meishanensis

ncbi_submitter: Ningbo University


ncbi_isolation_source: human gut

ncbi_organism_name: Subdoligranulum sp. APC924/74

ncbi_submitter: UNIVERSITY OF NEW SOUTH WALES


ncbi_organism_name: Vibrio vulnificus

ncbi_submitter: Prince of Songkla University


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Porphyromonadaceae bacterium UBA3276

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: USA: California

ncbi_isolation_source: blood

ncbi_organism_name: Borrelia nietonii YOR

ncbi_strain_identifiers: YOR

ncbi_submitter: Baylor College of Medicine


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: University of Nottingham


ncbi_organism_name: uncultured Christensenella sp.


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: MRSN BI Team


ncbi_organism_name: Muribaculaceae bacterium


ncbi_country: USA: OH

ncbi_isolation_source: soil and surface debris

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Buffalo; NY

ncbi_isolation_source: dental plaque

ncbi_organism_name: Streptococcus infantis

ncbi_submitter: Institute for Genome Sciences, University of Maryland, Baltimore


ncbi_country: Russia: Lake Baikal

ncbi_isolation_source: freshwater

ncbi_organism_name: Candidatus Nanopelagicaceae bacterium

ncbi_submitter: Evolutionary Genomics Group

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Actinomycetota;c__Actinomycetes;o__Candidatus Nanopelagicales;f__Candidatus Nanopelagicaceae;x__unclassified Candidatus Nanopelagicaceae;s__Candidatus Nanopelagicaceae bacterium


ncbi_isolation_source: groundwater

ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_organism_name: Burkholderia cenocepacia

ncbi_submitter: Universidade Federal Rural de Pernambuco


ncbi_country: USA: Madison; WI

ncbi_isolation_source: anaerobic bioreactor effluent

ncbi_organism_name: Prevotella sp.

ncbi_submitter: DOE Joint Genome Institute


ncbi_country: USA

ncbi_isolation_source: stool sample

ncbi_organism_name: Bacteroides uniformis

ncbi_submitter: Georgia Institute of Technology


ncbi_isolation_source: wound drainage fluid

ncbi_organism_name: Raoultella ornithinolytica

ncbi_submitter: Zhejiang University


ncbi_country: Japan

ncbi_organism_name: Enterobacter hormaechei

ncbi_submitter: Fujita Health University School of Medicine


ncbi_isolation_source: Waterfowl manure

ncbi_submitter: Sichuan Agricultural University


ncbi_country: South Africa: Msukaligwa; Sheepmoor Village

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus cereus

ncbi_submitter: North-west University


ncbi_country: Switzerland

ncbi_organism_name: Propionibacterium freudenreichii

ncbi_submitter: Agroscope


ncbi_country: India

ncbi_organism_name: Xanthomonas oryzae pv. oryzae

ncbi_submitter: Bacterial Genomics and Evolution Laboratory, CSIR-Institute of Microbial Technology, Sector 39-A, Chandigarh, India


ncbi_isolation_source: Air filter

ncbi_organism_name: Priestia aryabhattai

ncbi_submitter: Jet Propulsion Laboratory, California Institute of Technology


ncbi_organism_name: uncultured bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_submitter: Jilin Agricultural University


ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: EPFL


ncbi_organism_name: Chitinophagales bacterium

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Caulobacteraceae bacterium

ncbi_submitter: BIOLOGY CENTRE CAS, INSTITUTE OF HYDROBIOLOGY


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Universidad de Cadiz


ncbi_organism_name: Elizabethkingia miricola

ncbi_strain_identifiers: YXS

ncbi_submitter: Enze Hospital


ncbi_organism_name: Paenibacillus ehimensis

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: Solirubrobacteraceae bacterium

ncbi_submitter: Monash University


ncbi_isolate: Streptococcus species

ncbi_isolation_source: Human

ncbi_organism_name: bacterium

ncbi_strain_identifiers: Streptococcus species

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: China: Jiangxi; Dexing

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Clostridium sp.

ncbi_submitter: EMG


ncbi_isolation_source: lake water

ncbi_organism_name: Opitutia bacterium

ncbi_submitter: University of Zurich


ncbi_country: Brazil: Fortaleza

ncbi_isolation_source: feces

ncbi_organism_name: Bacillota bacterium

ncbi_submitter: LNCC


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Muribaculaceae;x__unclassified Muribaculaceae;s__Muribaculaceae bacterium Isolate-084 (Janvier)


ncbi_organism_name: uncultured Candidatus Binatia bacterium

ncbi_submitter: WELLCOME SANGER INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Binatota;c__Candidatus Binatia;x__environmental samples;s__uncultured Candidatus Binatia bacterium


ncbi_assembly_name: Rumen uncultured genome RUG10967

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Bacteroidia bacterium

ncbi_submitter: THE ROSLIN INSTITUTE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;x__environmental samples;s__uncultured Bacteroidia bacterium


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Medical Laboratory Sciences Department, Faculty of Applied Medical Sciences, King Abdulaziz Universi


ncbi_country: Israel

ncbi_isolation_source: milk from cow with mastitis; persistent intramammary infection

ncbi_organism_name: Escherichia coli VL2732

ncbi_submitter: Kimron Veterinary Institute


ncbi_organism_name: uncultured bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Universidad El Bosque


ncbi_country: Moldova: Chisinau

ncbi_organism_name: Mycobacterium tuberculosis MD15977

ncbi_submitter: Broad Institute


ncbi_country: Malaysia

ncbi_isolation_source: rectal swab

ncbi_organism_name: Vibrio cholerae VC1761

ncbi_submitter: Institute of Biological Science


ncbi_country: China: Wuyi Polymetallic Mine; Guangxi Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: Chloroflexota bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_country: China: Zhejiang

ncbi_isolation_source: caecum

ncbi_organism_name: Campylobacter lari

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Kentucky


ncbi_assembly_name: IMG-taxon 2675902960 annotated assembly

ncbi_organism_name: Stutzerimonas xanthomarina

ncbi_submitter: DOE - JOINT GENOME INSTITUTE


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhimurium

ncbi_submitter: Jeonbuk National University


ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: CLUE-TERRA


ncbi_isolation_source: rabbit gut

ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_isolation_source: metagenome

ncbi_organism_name: Lachnoclostridium sp. An138


ncbi_isolation_source: non-axenic culture inoculated from ocean water sample

ncbi_organism_name: Prochlorococcus marinus CUG1431

ncbi_submitter: China University of Geosciences


ncbi_country: China

ncbi_isolation_source: In-house environment

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: South China Agricultural University


ncbi_country: United Kingdom: University of Nottingham; Sutton Bonington Dairy Centre

ncbi_isolation_source: slurry tank

ncbi_organism_name: Escherichia coli

ncbi_submitter: University of Nottingham


ncbi_organism_name: Brucella melitensis

ncbi_submitter: Faculty of Health Sciences


ncbi_submitter: NEOSTAR_Indo-UK Project on AMR


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Berta


ncbi_country: Turkey

ncbi_isolation_source: sourdough

ncbi_organism_name: Lacticaseibacillus rhamnosus

ncbi_submitter: NCAUR-USDA/ARS


ncbi_organism_name: Segatella bryantii

ncbi_submitter: University of Ljubljana


ncbi_assembly_name: freshwater MAG --- AlinenLipids_bin-9430

ncbi_organism_name: uncultured bacterium

ncbi_submitter: BILS


ncbi_organism_name: Flavobacterium sp.

ncbi_submitter: The University of Texas at Austin


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: CRC AquaDiva


ncbi_country: Tanzania

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli 2-177-06_S4_C2

ncbi_submitter: IGS


ncbi_country: USA: Irvine; CA

ncbi_isolation_source: nares

ncbi_organism_name: Staphylococcus aureus T51022

ncbi_submitter: Broad Institute


ncbi_country: Canada: Toronto

ncbi_isolation_source: food

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Public Health Ontario


ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: Yunnan Agricultural University


ncbi_country: China: Qinghai

ncbi_submitter: Institute Of Microbiology Chinese Academy of Sciences


ncbi_country: Sweden

ncbi_isolation_source: Aspo HRL

ncbi_organism_name: Patescibacteria group bacterium

ncbi_submitter: Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__unclassified Patescibacteria group;s__Patescibacteria group bacterium


ncbi_submitter: China Agricultural University


ncbi_organism_name: Enterococcus faecalis

ncbi_submitter: Universidad de Guadalajara


ncbi_organism_name: Bacillus mobilis

ncbi_submitter: Institute for research in cancer and aging (IRCAN), Nice


ncbi_organism_name: Pseudomonas aeruginosa BWH052


ncbi_country: USA: Salinas; California

ncbi_submitter: United States Department of Agriculture, Agricultural Research Service


ncbi_country: Puerto Rico: Maricao Forest

ncbi_isolation_source: bromeliad phytotelma

ncbi_organism_name: Rhodopseudomonas sp. BR0M22

ncbi_submitter: University of Puerto Rico at Mayaguez


ncbi_organism_name: uncultured Christensenella sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Netherlands

ncbi_isolation_source: CSF

ncbi_submitter: SC


ncbi_country: Germany: Greifswald

ncbi_isolation_source: wastewater

ncbi_organism_name: Streptococcus sp.

ncbi_submitter: Genomic and Applied Microbiology & Goettingen Genomics Laboratory


ncbi_organism_name: Acutalibacteraceae bacterium


ncbi_country: Japan:Hiroshima; Higashi-Hiroshima

ncbi_organism_name: Enterobacter oligotrophicus

ncbi_submitter: Bioconversion Group, Research Institute for Sustainable Chemistry, Materials and Chemistry, National Institute of Advanced Industrial Science and Technology


ncbi_organism_name: Brucella canis

ncbi_submitter: Chinese Animal Health and Epidemiology Center


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Xanthomonas campestris pv. raphani

ncbi_strain_identifiers: WHRI 8870

ncbi_submitter: The Xanthomonas Threats project


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Bacteriology laboratory, Bicetre hospital


ncbi_organism_name: Guyparkeria halophila

ncbi_submitter: Cultivarium


ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Miami


ncbi_country: USA: Georgia

ncbi_isolation_source: Imported Fresh Produce 5

ncbi_organism_name: Serratia liquefaciens

ncbi_submitter: University of Wyoming


ncbi_country: Panama: Bocas del Toro; STRI Point

ncbi_isolation_source: sponge tissue

ncbi_organism_name: Silicimonas sp.

ncbi_submitter: Stony Brook University


ncbi_country: United Kingdom

ncbi_isolation_source: Guttural pouch

ncbi_organism_name: Streptococcus equi subsp. equi

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus;x__Streptococcus dysgalactiae group;s__Streptococcus equi;sb__Streptococcus equi subsp. equi


ncbi_country: Greenland: Baffin Bay

ncbi_isolation_source: marine sediment

ncbi_organism_name: Syntrophobacteraceae bacterium

ncbi_submitter: University of Vienna


ncbi_country: USA: MA; Boston

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: BWH 81

ncbi_submitter: Broad Institute


ncbi_country: Pacific Ocean

ncbi_isolation_source: deep-sea hydrothermal deposit

ncbi_organism_name: Helicobacteraceae bacterium

ncbi_submitter: Portland State University


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: India

ncbi_isolation_source: blood

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: Christian Medical College


ncbi_assembly_name: Campylobacter jejuni CVM 41936 v1.0

ncbi_country: USA

ncbi_isolation_source: clinical

ncbi_organism_name: Campylobacter jejuni CVM 41936

ncbi_submitter: FDA/CVM


ncbi_organism_name: Ignavibacteriales bacterium

ncbi_submitter: Biology Meets Subduction, Deep Carbon Observatory


ncbi_country: Peru: Lima

ncbi_isolation_source: patient

ncbi_organism_name: Mycobacterium tuberculosis

ncbi_submitter: CETR, HSPH, Megan Murray, director


ncbi_assembly_name: Peptoclostridium difficile

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: UNIVERSITE LAVAL


ncbi_country: China: Xinjiang

ncbi_submitter: China Agricultural University


ncbi_country: USA: Illinois; Champaign

ncbi_isolation_source: drinking water system-before chlorination

ncbi_organism_name: Methylobacter sp.

ncbi_submitter: University of Illinois at Urbana-Champaign


ncbi_organism_name: Methylophilaceae bacterium

ncbi_submitter: University of Southern California


ncbi_country: China: Shenzhen

ncbi_isolation_source: fecal material [ENVO:00002003]

ncbi_organism_name: Lachnospiraceae bacterium AM67-14ACA

ncbi_submitter: BGI-Shenzhen


ncbi_isolation_source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks

ncbi_organism_name: Clostridium sp.

ncbi_submitter: Technical University of Denmark


ncbi_country: Greece

ncbi_isolation_source: soil

ncbi_organism_name: Bacillus pumilus

ncbi_submitter: Aristotle University of Thessaloniki


ncbi_country: USA: California

ncbi_isolation_source: leaf litter

ncbi_organism_name: Curtobacterium sp. MCPF17_050

ncbi_submitter: University of California, Irvine


ncbi_country: Russia: Baikal region

ncbi_isolation_source: sewage

ncbi_organism_name: Xanthobacter oligotrophicus

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Germany: Hamburg-Reitbrook

ncbi_isolation_source: water

ncbi_organism_name: Ignavibacteria bacterium UBA7675

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Ignavibacteriota;c__Ignavibacteria;x__unclassified Ignavibacteria;s__Ignavibacteria bacterium UBA7675


ncbi_country: South Korea: Sangju

ncbi_isolation_source: Makgeolli (Korean traditional alcoholic beverage)

ncbi_organism_name: Schleiferilactobacillus harbinensis

ncbi_submitter: Nakdonggang National Institute of Biological Resources


ncbi_country: Canada

ncbi_isolation_source: biosolids

ncbi_organism_name: Citrobacter braakii

ncbi_submitter: Canadian Food Inspection Agency


ncbi_country: Germany: Berlin

ncbi_isolation_source: Perineum swab

ncbi_organism_name: Stenotrophomonas maltophilia

ncbi_submitter: Universitat Autonoma de Barcelona


ncbi_isolation_source: not provided

ncbi_organism_name: uncultured Wolbachia sp.

ncbi_submitter: Centre for Integrative Biology (CIBIO), University of Trento


ncbi_country: Switzerland: Zurich

ncbi_isolation_source: gastric biopsy

ncbi_organism_name: Helicobacter pylori

ncbi_submitter: University Hospital Basel


ncbi_isolation_source: freshwater metagenome

ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: European Bioinformatics Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;x__environmental samples;s__uncultured Bacteroidales bacterium


ncbi_isolation_source: metagenome

ncbi_organism_name: Megamonas hypermegale

ncbi_submitter: addis ababa university


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_country: Germany: BAM Federal Institute for Materials Research and Testing; Berlin

ncbi_isolation_source: termite gut

ncbi_organism_name: Synergistaceae bacterium

ncbi_submitter: Max Planck Institute for Terrestrial Microbiology


ncbi_country: USA: CO

ncbi_isolation_source: feces (Bos taurus)

ncbi_organism_name: Escherichia coli

ncbi_submitter: FDA/CFSAN


ncbi_country: USA: Ohio; western Lake Erie; NOAA Station WE12

ncbi_isolation_source: lake water

ncbi_organism_name: Planctomycetaceae bacterium

ncbi_submitter: University of Michigan


ncbi_assembly_name: Rumen uncultured genome RUG10710

ncbi_isolation_source: cattle rumen

ncbi_organism_name: uncultured Ruminococcus sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Colombia

ncbi_isolation_source: Blood

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Synthetic Genomics Vaccines, Inc.


ncbi_organism_name: Serratia nevei

ncbi_submitter: The University of Hong Kong


ncbi_organism_name: Nostoc sp. UHCC 0252

ncbi_strain_identifiers: UHCC 0252

ncbi_submitter: Universidade de Sao Paulo, Sao Paulo, Brazil

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;x__Cyanobacteriota/Melainabacteria group;p__Cyanobacteriota;c__Cyanophyceae;o__Nostocales;f__Nostocaceae;g__Nostoc;x__unclassified Nostoc;s__Nostoc sp. UHCC 0252


ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_country: Pakistan

ncbi_isolation_source: bedside rail in hospital intensive care unit

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: uncultured Eubacteriales bacterium


ncbi_organism_name: Agathobacter sp.

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_organism_name: Proteus mirabilis

ncbi_submitter: Banfield Lab, University of California, Berkeley


ncbi_country: USA: northeast

ncbi_isolation_source: Pasteurized milk

ncbi_organism_name: Pseudomonas sp. FSL R10-2189

ncbi_submitter: Cornell University


ncbi_country: China: Nanjing

ncbi_isolate: new MAG-386

ncbi_isolation_source: bioreactor sludge

ncbi_organism_name: Chitinophagaceae bacterium

ncbi_strain_identifiers: new MAG-386

ncbi_submitter: Micoorganism


ncbi_country: USA

ncbi_isolation_source: BLOOD

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Center for Microbial Communities


ncbi_organism_name: uncultured Burkholderiales bacterium

ncbi_submitter: German Federation for Biological Data


ncbi_organism_name: Rhodococcus qingshengii

ncbi_submitter: The Herbert Wertheim UF Scripps Institute for Biomedical Innovation & Technology


ncbi_organism_name: Methyloceanibacter sp.

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: uncultured Aquimonas sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__environmental samples;s__uncultured Candidatus Saccharibacteria bacterium


ncbi_organism_name: Microbacterium sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: Colorado State University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Parcubacteria;x__unclassified Candidatus Parcubacteria;s__Candidatus Parcubacteria bacterium


ncbi_organism_name: Limosilactobacillus fermentum

ncbi_strain_identifiers: IMDO TC9L10

ncbi_submitter: VRIJE UNIVERSITEIT BRUSSEL


ncbi_organism_name: Bacillus cereus group sp. BceL215

ncbi_submitter: The Hong Kong Polytechnic University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;x__Bacillus cereus group;x__unclassified Bacillus cereus group;s__Bacillus cereus group sp. BceL215


ncbi_organism_name: Bifidobacterium adolescentis

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Barnesiella intestinihominis

ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_isolation_source: marine metagenome

ncbi_organism_name: uncultured Pseudomonadota bacterium

ncbi_submitter: EMG

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;x__environmental samples;s__uncultured Pseudomonadota bacterium


ncbi_isolation_source: sheep gut metagenome

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: EMBL-EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Clostridia;x__environmental samples;s__uncultured Clostridia bacterium


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Muribaculaceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Germany

ncbi_organism_name: Rhizobium leguminosarum bv. viciae

ncbi_submitter: IRD


ncbi_organism_name: Thermodesulfobacteriota bacterium

ncbi_submitter: Israel Oceanographic and Limnological Research


ncbi_country: China: Tongling Copper Mine; Anhui Province

ncbi_isolation_source: acid mine drainage sediment

ncbi_organism_name: bacterium

ncbi_submitter: Sun Yat-sen University, Guangzhou


ncbi_isolation_source: high methane producing sheep

ncbi_organism_name: Ruminococcus sp. UBA3752

ncbi_submitter: University of Queensland


ncbi_isolation_source: human gut

ncbi_organism_name: uncultured Opitutales bacterium

ncbi_submitter: EBI

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;c__Opitutia;o__Opitutales;x__environmental samples;s__uncultured Opitutales bacterium


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Ares Genetics GmbH


ncbi_assembly_name: Rumen uncultured genome RUG13882

ncbi_organism_name: uncultured Eubacteriales bacterium

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: Italy

ncbi_isolation_source: Fecal sample

ncbi_organism_name: Bifidobacterium pseudolongum

ncbi_submitter: University of Parma


ncbi_country: China: Guangzhou

ncbi_organism_name: Rhodococcus ruber

ncbi_submitter: south china agricultural university


ncbi_country: Iran: Caspian Sea near Babolsar

ncbi_isolation_source: Caspian sea 50 m depth

ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: University of Tehran


ncbi_country: Taiwan

ncbi_isolation_source: blood sample

ncbi_organism_name: Elizabethkingia anophelis

ncbi_submitter: National Chung Hsing University


ncbi_country: USA: Chicago; Illinois

ncbi_isolation_source: sputum

ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Northwestern University Feinberg School of Medicine


ncbi_country: France: Nice

ncbi_isolation_source: seawater

ncbi_organism_name: Pseudoalteromonas citrea

ncbi_submitter: Shandong University


ncbi_country: Netherlands

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: SC


ncbi_country: Spain: Asturias

ncbi_organism_name: Corynebacterium flavescens

ncbi_submitter: Universidad de Leon (Spain)


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Atopobiaceae bacterium


ncbi_isolation_source: pig gut metagenome

ncbi_organism_name: uncultured Bacteroidales bacterium

ncbi_submitter: EMG


ncbi_isolation_source: surface swab

ncbi_organism_name: Comamonas aquatica

ncbi_submitter: Washington University in St. Louis School of Medicine


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Idaho Bureau of Laboratories


ncbi_organism_name: Bacilli bacterium

ncbi_submitter: University of Chinese Academy of Sciences


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Lachnospiraceae bacterium


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: CLUE-TERRA


ncbi_country: United Kingdom:England

ncbi_isolation_source: blood

ncbi_organism_name: Serratia marcescens


ncbi_country: China: Shanxi

ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: City University of Hong Kong


ncbi_assembly_name: Rumen uncultured genome RUG10306

ncbi_isolation_source: cattle rumen


ncbi_organism_name: Nonlabens ulvanivorans

ncbi_submitter: University of Southern California


ncbi_submitter: Canadian Food Inspection Agency

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;s__Enterobacter hormaechei;sb__Enterobacter hormaechei subsp. xiangfangensis


ncbi_organism_name: Macrococcus equi

ncbi_submitter: University of Bern


ncbi_country: Belgium: Ghent

ncbi_isolation_source: broiler skin

ncbi_organism_name: Aliarcobacter cibarius LMG 21996

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_organism_name: uncultured Mageeibacillus sp.

ncbi_submitter: Centre for Microbiome Research


ncbi_country: Japan

ncbi_isolation_source: feces

ncbi_organism_name: Escherichia coli

ncbi_submitter: Microbiology, Graduate School of Medical Sciences, Kyushu University


ncbi_isolation_source: Colon


ncbi_country: Spain

ncbi_isolation_source: seawater from the Atlantic Spanish coast

ncbi_organism_name: Vibrio mytili

ncbi_strain_identifiers: CAIM 528

ncbi_submitter: CIAD, A.C. Mazatlan Unit for Aquaculture


ncbi_country: China

ncbi_isolation_source: paddy soil

ncbi_organism_name: Fundidesulfovibrio agrisoli

ncbi_submitter: Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment


ncbi_country: USA: NY

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: China: Maonan District; Maoming City; Guangdong Province

ncbi_isolation_source: rhizosphere soil

ncbi_organism_name: Sphingomonas lycopersici

ncbi_submitter: Guangdong Institute Of Microbiology


ncbi_organism_name: Enterococcus gallinarum

ncbi_submitter: Institute of Microbiology, Chinese Academy of Sciences


ncbi_isolation_source: salami

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: FDA


ncbi_assembly_name: Rumen uncultured genome RUG10186

ncbi_organism_name: uncultured Prevotella sp.

ncbi_submitter: THE ROSLIN INSTITUTE


ncbi_country: China: Beijing

ncbi_isolation_source: nasal swab

ncbi_submitter: China Agricultural University


ncbi_organism_name: Candidatus Zixiibacteriota bacterium

ncbi_submitter: University Duisburg-Essen

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;p__Candidatus Zixiibacteriota;x__unclassified Candidatus Zixiibacteriota;s__Candidatus Zixiibacteriota bacterium


ncbi_submitter: Huazhong Agricultural University


ncbi_country: Australia: Saint Lucia; Queensland Australia

ncbi_isolation_source: 0.22um filtered reactor supernatant

ncbi_submitter: University of Queensland

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Saccharimonadota;x__unclassified Candidatus Saccharimonadota;s__Candidatus Saccharibacteria bacterium UBA5946


ncbi_organism_name: Fuerstiella sp.

ncbi_submitter: Korea Polar Research Institute


ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacteroides abscessus

ncbi_submitter: Shanghai Pulmonary Hospital, Tongji University School of Medicine


ncbi_organism_name: Halieaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_isolation_source: rat gut

ncbi_organism_name: Parabacteroides sp. UBA7107


ncbi_isolation_source: Stool

ncbi_organism_name: Clostridioides difficile

ncbi_submitter: Toho University


ncbi_organism_name: Anaerobiospirillum sp.

ncbi_submitter: Veterinary Research Institute


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: uncultured Flavobacteriaceae bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_isolation_source: Cabrales Cheese

ncbi_organism_name: Staphylococcus equorum

ncbi_submitter: IPLA-CSIC


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. abscessus

ncbi_submitter: SC


ncbi_organism_name: Escherichia coli


ncbi_organism_name: Blautia producta


ncbi_country: USA: University of Wisconsin-Madison West Madison Agricultural Research Station; Madison; WI

ncbi_isolation_source: Agricultural field; aerial root mucilage

ncbi_organism_name: Klebsiella michiganensis

ncbi_submitter: University of Wisconsin-Madison


ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: National Institute of Health


ncbi_organism_name: Pseudomonas viridiflava

ncbi_submitter: MAX PLANCK INSTITUTE FOR DEVELOPMENTAL BIOLOGY


ncbi_country: China: Yellow Sea

ncbi_isolation_source: marine sediment

ncbi_organism_name: Parasedimentitalea denitrificans

ncbi_submitter: Qingdao Agricultural University


ncbi_country: France

ncbi_organism_name: Enterobacter cloacae complex sp. P29RS

ncbi_submitter: Faculte de Medecine, Universite Paris-Sud

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. P29RS


ncbi_organism_name: Cronobacter dublinensis subsp. dublinensis

ncbi_submitter: University of Wyoming


ncbi_organism_name: Streptococcus sp. BJSWXB3CM3

ncbi_submitter: Jiangnan University


ncbi_isolation_source: sediments collected from the Katase hot spring field

ncbi_organism_name: Candidatus Parcubacteria bacterium

ncbi_submitter: RIKEN-BRC


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Oscillospiraceae bacterium


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: University of Zurich


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: uncultured Bacteroides sp.

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae


ncbi_country: Argentina: Buenos Aires

ncbi_isolation_source: peritoneal fluid

ncbi_organism_name: Acinetobacter johnsonii

ncbi_submitter: CSUF


ncbi_organism_name: Bacteroides intestinalis

ncbi_submitter: University of Copenhagen


ncbi_country: Switzerland: Birmensdorf

ncbi_isolation_source: stream/river surface water

ncbi_organism_name: Enterococcus faecalis


ncbi_country: China: Zhejiang

ncbi_isolation_source: gut

ncbi_organism_name: Acinetobacter sp. AS23

ncbi_submitter: Zhejiang A & F University


ncbi_country: Samoa

ncbi_isolation_source: Not known

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Salmonella enterica subsp. enterica serovar Typhi


ncbi_organism_name: Desulfovibrionaceae bacterium

ncbi_submitter: Helmholtz Centre for Environmental Research - UFZ


ncbi_country: Ethiopia

ncbi_organism_name: Xanthomonas vasicola

ncbi_submitter: University of Exeter


ncbi_country: China: Rizhao City and Ningde City

ncbi_isolation_source: pyropia

ncbi_organism_name: Granulosicoccaceae bacterium

ncbi_submitter: Ocean University of China


ncbi_organism_name: uncultured Muribaculaceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: Canada: Univ of Guelph; Guelph; ON

ncbi_isolation_source: root

ncbi_organism_name: Enterobacter sp. UCD-UG_FMILLET

ncbi_submitter: UC Davis


ncbi_assembly_name: freshwater MAG --- Loc080925-8-8m_bin-556

ncbi_isolation_source: lake water

ncbi_organism_name: uncultured Chlorobiaceae bacterium

ncbi_submitter: BILS


ncbi_country: Japan

ncbi_isolation_source: blood

ncbi_submitter: Department of Microbiology, Graduate School of Medical and Dental Sciences, Kagoshima University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Oranienburg


ncbi_organism_name: uncultured Prevotella sp.


ncbi_isolation_source: human feces metagenome

ncbi_organism_name: [Eubacterium] siraeum

ncbi_submitter: EMG


ncbi_country: China: Hohhot

ncbi_isolation_source: dairy products

ncbi_submitter: university


ncbi_country: China: Guangxi; Longshenao

ncbi_isolation_source: sediment

ncbi_organism_name: Ferrimicrobium acidiphilum

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Pseudomonas aeruginosa

ncbi_submitter: Taizhou University


ncbi_country: Mexico: Tepoztlan

ncbi_isolation_source: soil

ncbi_organism_name: Lysinibacillus fusiformis

ncbi_submitter: Seqomics Ltd


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Nitrospirota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_organism_name: uncultured Candidatus Saccharibacteria bacterium

ncbi_submitter: Centre for Microbiome Research


ncbi_organism_name: uncultured Oscillibacter sp.


ncbi_organism_name: Escherichia coli

ncbi_submitter: Sanmen People's Hospital


ncbi_organism_name: Pseudomonadota bacterium

ncbi_submitter: Colorado State University


ncbi_organism_name: Corynebacterium tuberculostearicum

ncbi_submitter: University of York


ncbi_isolation_source: chicken caecal content

ncbi_organism_name: uncultured Clostridia bacterium

ncbi_submitter: Institut National pour la Recherche Agronomique (FRANCE)


ncbi_organism_name: Staphylococcus epidermidis

ncbi_submitter: Sahlgrenska University Hospital


ncbi_organism_name: uncultured Phycisphaeraceae bacterium


ncbi_organism_name: Salmonella sp. NW1124

ncbi_submitter: Sichuan University


ncbi_organism_name: Mycolicibacter algericus

ncbi_submitter: The Microflora Danica Consortium


ncbi_organism_name: Polyangia bacterium

ncbi_submitter: XINJIANG INSTITUTE OF ECOLOGY AND GEOGRAPHY


ncbi_organism_name: Paenibacillus jamilae

ncbi_submitter: USDA-ARS-NCAUR


ncbi_organism_name: uncultured Cellvibrionaceae bacterium


ncbi_organism_name: uncultured Bacilli bacterium

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;x__environmental samples;s__uncultured Bacilli bacterium


ncbi_country: Canada: Lacombe

ncbi_isolation_source: feces

ncbi_organism_name: Bacteroidales bacterium

ncbi_submitter: Agriculture and Agri-Food Canada


ncbi_isolation_source: mouse gut metagenome

ncbi_submitter: EMG


ncbi_isolation_source: pig gut metagenome


ncbi_country: Brazil: Dourados

ncbi_organism_name: Bacteroidota bacterium

ncbi_submitter: LNCC

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__FCB group;x__Bacteroidota/Chlorobiota group;p__Bacteroidota;x__unclassified Bacteroidota;s__Bacteroidota bacterium


ncbi_organism_name: uncultured Muribaculum sp.

ncbi_submitter: the hong kong university of science and technology


ncbi_organism_name: bacterium

ncbi_submitter: Institute of Clinical Molecular Biology, University of Kiel, Germany


ncbi_country: Atlantic Ocean: North Pond

ncbi_isolation_source: marine subsurface aquifer

ncbi_organism_name: Moritella sp.

ncbi_submitter: University of Southern California


ncbi_organism_name: Citrobacter freundii

ncbi_strain_identifiers: Bacteria

ncbi_submitter: Howard university


ncbi_country: USA

ncbi_organism_name: Escherichia coli

ncbi_submitter: Texas A&M University, College of Veterinary Medicine and Biomedical Sciences


ncbi_country: USA:Alaska; Seward Peninsula

ncbi_isolation_source: root nodule

ncbi_organism_name: Rhodoferax sp.

ncbi_submitter: Next generation Ecosystem Experiment Arctic


ncbi_country: USA:New York; EastHarlem

ncbi_isolation_source: nasal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: SC


ncbi_country: Australia: Davies Reef

ncbi_organism_name: Acidimicrobiaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_submitter: Helmholtz Centre for Infection Research


ncbi_country: Switzerland

ncbi_isolation_source: milk

ncbi_submitter: Agroscope, Microbial Food Safety


ncbi_isolation_source: Faeces

ncbi_organism_name: Helicobacter typhlonius

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_organism_name: Shigella sonnei

ncbi_submitter: Fujian Medical University


ncbi_country: China: Jinlin

ncbi_organism_name: Enterobacter roggenkampii

ncbi_submitter: Yangzhou University


ncbi_organism_name: Minisyncoccota bacterium

ncbi_submitter: University of East Anglia

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Microgenomates group;p__Minisyncoccota;x__unclassified Minisyncoccota;s__Minisyncoccota bacterium


ncbi_organism_name: uncultured Acholeplasmataceae bacterium


ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Acinetobacter nosocomialis


ncbi_organism_name: uncultured Muribaculaceae bacterium


ncbi_country: United Kingdom

ncbi_isolation_source: Respiratory system

ncbi_organism_name: Mycobacteroides abscessus subsp. massiliense


ncbi_organism_name: Legionella sp. W10-070

ncbi_submitter: INSTITUT PASTEUR


ncbi_isolation_source: urine

ncbi_organism_name: Klebsiella oxytoca

ncbi_submitter: Centers for Disease Control and Prevention. Division of Healthcare Quality Promotion


ncbi_isolation_source: Blood

ncbi_organism_name: Klebsiella pneumoniae


ncbi_country: China: Xuzhou

ncbi_isolation_source: sputum

ncbi_submitter: The Institute for Disease Prevention and Control of PLA


ncbi_organism_name: Alcaligenes sp.

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Streptococcus pyogenes

ncbi_submitter: Gyeongsang National University Changwon Hospital


ncbi_country: China: Xizang

ncbi_isolation_source: fresh feces

ncbi_organism_name: Acetatifactor sp.

ncbi_submitter: Tibet Agricultural and Animal Husbandry College


ncbi_country: China: Zhejiang

ncbi_organism_name: Escherichia coli

ncbi_submitter: Zhejiang Academy of Agricultural Sciences


ncbi_organism_name: Enterococcus sp. C59

ncbi_submitter: Northwest A & F University


ncbi_country: Bangladesh: Dhaka

ncbi_isolation_source: male child feces

ncbi_organism_name: Escherichia coli O25b:H4-ST131

ncbi_submitter: Eawag, Swiss Federal Institute of Aquatic Science and Technology


ncbi_organism_name: Methylorubrum populi BJ001

ncbi_submitter: US DOE Joint Genome Institute (JGI-PGF)


ncbi_country: Sweden

ncbi_isolation_source: Clinical

ncbi_organism_name: Legionella pneumophila

ncbi_submitter: SC


ncbi_country: USA: Angelo; CA

ncbi_isolation_source: Soil sample from Angelo meadow plot 2; 20cm depth; 6 days after first rain event (27mm)

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;x__PVC group;p__Verrucomicrobiota;x__unclassified Verrucomicrobiota;s__Verrucomicrobia bacterium 13_2_20CM_55_10


ncbi_country: China: Shandong; Jinan

ncbi_submitter: Shandong university


ncbi_isolation_source: gut

ncbi_organism_name: Oscillospiraceae bacterium

ncbi_submitter: University of Queensland


ncbi_isolation_source: stool sample

ncbi_organism_name: Vibrio cholerae O1 biovar El Tor

ncbi_submitter: International Centre for Diarrhoeal Disease Research, Bangladesh

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Vibrionales;f__Vibrionaceae;g__Vibrio;s__Vibrio cholerae;x__Vibrio cholerae O1;x__Vibrio cholerae O1 biovar El Tor


ncbi_submitter: Chinese Academy of Agric Sciences


ncbi_country: Sweden: Sjolunda WWTP

ncbi_isolation_source: Partial nitritation anammox bioreactor

ncbi_organism_name: Burkholderiales bacterium

ncbi_submitter: University of Gothenburg


ncbi_country: Sweden: Stordalen Mire

ncbi_isolation_source: permafrost active layer soil

ncbi_organism_name: Acidobacteriaceae bacterium

ncbi_submitter: Australian Centre for Ecogenomics, The University of Queensland


ncbi_submitter: Arizona State Public Health Laboratory

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Tennessee


ncbi_organism_name: Sutterella wadsworthensis

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Enterobacter cloacae complex sp. IR5381

ncbi_submitter: The General Hospital of the People's Liberation Army

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Enterobacter;x__Enterobacter cloacae complex;x__unclassified Enterobacter cloacae complex;s__Enterobacter cloacae complex sp. IR5381


ncbi_organism_name: Burkholderia dolosa

ncbi_submitter: University of Michigan


ncbi_isolation_source: mouse gut metagenome

ncbi_organism_name: Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_organism_name: Sulfitobacter marinivivus

ncbi_submitter: Honam National Institute of Biological Resources


ncbi_country: Brazil: Iranduba

ncbi_isolation_source: leaf litter

ncbi_organism_name: Patulibacter sp.

ncbi_submitter: University of Sao Paulo


ncbi_organism_name: Deltaproteobacteria bacterium

ncbi_submitter: Australian Centre for Ecogenomics


ncbi_organism_name: Klebsiella pneumoniae

ncbi_submitter: Centers for Disease Control and Prevention


ncbi_country: Netherlands

ncbi_isolation_source: stool

ncbi_organism_name: Escherichia coli

ncbi_strain_identifiers: STEC 1375

ncbi_submitter: University of Groningen, University Medical Center Groningen


ncbi_organism_name: Thermotogota bacterium

ncbi_submitter: CLUE-TERRA


ncbi_organism_name: Avibacterium paragallinarum

ncbi_submitter: Pennsylvania State University


ncbi_country: China:Hong Kong SAR; Shatin waste water treatment plant

ncbi_isolation_source: activated sludge from Shatin waste water treatment plant collected monthly from 2007 through 2015

ncbi_organism_name: Paracoccaceae bacterium

ncbi_submitter: The University Hong Kong


ncbi_organism_name: Campylobacter jejuni

ncbi_submitter: Microbiology, Graduate school of Biomedical & Health Sciences, Hiroshima University


ncbi_isolation_source: cold seep

ncbi_organism_name: Candidatus Aminicenantes bacterium

ncbi_submitter: Third Institute of Oceanography, Ministry of Natural Resources

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;p__Candidatus Aminicenantota;x__unclassified Candidatus Aminicenantes;s__Candidatus Aminicenantes bacterium


ncbi_country: Madagascar

ncbi_submitter: Institut Pasteur of Madagascar


ncbi_country: South Africa

ncbi_isolation_source: ectocervical mucosa

ncbi_organism_name: Lactobacillus gasseri

ncbi_submitter: Massachusetts General Hospital


ncbi_country: USA: San Francisco; California

ncbi_isolation_source: Estuarine surface sediment

ncbi_organism_name: Lysobacterales bacterium

ncbi_submitter: University of Texas - Austin, Baker Lab


ncbi_isolation_source: nasopharynx

ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: SC


ncbi_isolation_source: not provided

ncbi_organism_name: Streptococcus parasanguinis

ncbi_submitter: EMG


ncbi_country: China: Shenzhen

ncbi_isolation_source: feces

ncbi_organism_name: Mitsuokella sp. AF21-1AC

ncbi_submitter: BGI


ncbi_country: Australia: Queensland

ncbi_isolation_source: laboratory culture after 20 days induced resistance against Octapeptin C4

ncbi_submitter: The University of Queensland


ncbi_organism_name: Dorea sp.

ncbi_submitter: Joint Microbiome Facility


ncbi_country: Indonesia: Java

ncbi_isolation_source: soil

ncbi_organism_name: Streptomyces sp. Tu 4128

ncbi_submitter: State Key Laboratory of Bioreactor Engineering


ncbi_country: Brazil: Recife

ncbi_isolation_source: peritoneal fluid

ncbi_organism_name: Acinetobacter baumannii

ncbi_submitter: Instituto Aggeu Magalhaes - FIOCRUZ - Brazil


ncbi_isolate: Streptococcus mitis

ncbi_organism_name: Streptococcus mitis

ncbi_strain_identifiers: Streptococcus mitis

ncbi_submitter: UNIVERSITY COLLEGE LONDON


ncbi_country: China: Langfang

ncbi_isolation_source: mik sample

ncbi_organism_name: Lactococcus formosensis

ncbi_submitter: China Agricultural University


ncbi_isolation_source: clinical material

ncbi_organism_name: Acinetobacter calcoaceticus

ncbi_submitter: Universitaetsklinikum Freiburg


ncbi_isolation_source: wound misc

ncbi_organism_name: Anaerococcus sp. HMSC068A02

ncbi_submitter: The Genome Institute at Washington University


ncbi_organism_name: uncultured Atopobium sp.


ncbi_organism_name: Serratia ureilytica

ncbi_submitter: University of Calgary


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: HELMHOLTZ CENTRE FOR INFECTION RESEARCH


ncbi_isolation_source: ruminant gastrointestinal tract

ncbi_organism_name: Prevotella sp.

ncbi_submitter: Nanjing Agricultural University


ncbi_organism_name: Kaistia sp. MMO-174

ncbi_submitter: University of Wisconsin-Madison


ncbi_isolation_source: Faeces

ncbi_organism_name: uncultured Alistipes sp.

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: South Africa:Stellenbosch

ncbi_isolation_source: sputum

ncbi_organism_name: Mycobacterium tuberculosis


ncbi_organism_name: Aneurinibacillus thermoaerophilus

ncbi_submitter: USDA-ARS-NCAUR


ncbi_isolation_source: chicken gut metagenome

ncbi_organism_name: uncultured Blautia sp.

ncbi_submitter: UNIVERSITY OF COPENHAGEN


ncbi_organism_name: Streptococcus pneumoniae

ncbi_submitter: National Institute for Communicable Diseases


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Sungkyunkwan University School of Medicine


ncbi_country: New Zealand: Waikato

ncbi_organism_name: Bordetella pertussis

ncbi_submitter: University of Bath


ncbi_country: Pakistan

ncbi_isolation_source: Perirectal

ncbi_organism_name: Staphylococcus aureus

ncbi_submitter: NCTR/US FDA


ncbi_country: India:Arunachal Pradesh

ncbi_isolation_source: Soil

ncbi_organism_name: Streptomyces katrae

ncbi_submitter: Institute of Advanced Study in Science and Technology


ncbi_isolation_source: Caecum

ncbi_organism_name: uncultured Duncaniella sp.


ncbi_country: China

ncbi_isolation_source: subsurface sediment

ncbi_organism_name: Dyadobacter bucti

ncbi_submitter: Beijing University of Chemical Technology


ncbi_organism_name: Photobacterium frigidiphilum

ncbi_submitter: Research Center of Biotechnology RAS


ncbi_country: Greece: Epirus

ncbi_isolation_source: Greek mizithra cheese

ncbi_organism_name: Listeria monocytogenes

ncbi_submitter: Hellenic Agricultural Organization - DIMITRA


ncbi_organism_name: Caldisericum sp.


ncbi_organism_name: Helicobacter pylori CPY6261

ncbi_submitter: Institute for Genome Sciences


ncbi_country: United Kingdom

ncbi_organism_name: Pseudomonas syringae pv. maculicola

ncbi_submitter: University of the West of England

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas;x__Pseudomonas syringae group;s__Pseudomonas syringae group genomosp. 3;x__Pseudomonas syringae pv. maculicola


ncbi_isolation_source: Ground Turkey

ncbi_submitter: University of California at Davis

ncbi_taxonomy_unfiltered: d__Bacteria;x__Pseudomonadati;p__Pseudomonadota;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Salmonella;s__Salmonella enterica;sb__Salmonella enterica subsp. enterica;x__Salmonella enterica subsp. enterica serovar Agona


ncbi_organism_name: Clostridium disporicum

ncbi_submitter: Icahn School of Medicine at Mount Sinai


ncbi_organism_name: uncultured Thermotogae bacterium

ncbi_submitter: Centre for Microbiome Research

ncbi_taxonomy_unfiltered: d__Bacteria;x__Thermotogati;p__Thermotogota;c__Thermotogae;x__environmental samples;s__uncultured Thermotogae bacterium


ncbi_organism_name: Prevotella sp.

ncbi_submitter: Federal Research and Clinical Centre of Physical-Chemical Medicine


ncbi_organism_name: Gemmiger formicilis


ncbi_organism_name: Ilumatobacteraceae bacterium

ncbi_submitter: The Helmholtz Centre of Environmental Research


ncbi_organism_name: Facklamia sp. P12937

ncbi_submitter: Institute of Microbiology, Guangdong Academy of Sciences


ncbi_organism_name: Aquiluna sp.

ncbi_submitter: Japan Agency for Marine-Earth Science and technology


ncbi_organism_name: Frisingicoccus sp.

ncbi_submitter: Washington University in Saint Louis


ncbi_organism_name: Salmonella enterica

ncbi_submitter: Huzhou center for disease control and prevention


ncbi_country: China: Guangdong

ncbi_isolation_source: Fankou acid mine drainage sediment Core B

ncbi_organism_name: Actinomycetota bacterium

ncbi_submitter: Sun Yat-Sen University


ncbi_country: China: Hunan; Shuikoushan

ncbi_isolation_source: sediment

ncbi_organism_name: Francisellaceae bacterium

ncbi_submitter: an eLibrary of Microbial Systematics and Genomics


ncbi_organism_name: Dokdonella sp.

ncbi_submitter: Universidad Andres Bello, Castro Lab


ncbi_country: USA: Rifle; CO

ncbi_isolation_source: Rifle well FP-101 under low O2 conditions; 1.2 micron filter; full assembly

ncbi_submitter: Banfield Lab, University of California, Berkeley

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacteria incertae sedis;x__Bacteria candidate phyla;x__Patescibacteria group;x__Parcubacteria group;p__Candidatus Magasanikiibacteriota;s__Candidatus Magasanikbacteria bacterium RIFCSPLOWO2_12_FULL_34_7


ncbi_organism_name: uncultured Lachnospiraceae bacterium

ncbi_submitter: UNIVERSITY OF CAMBRIDGE


ncbi_country: China: Shanxi province

ncbi_isolation_source: nasopharyngeal swabs

ncbi_organism_name: Neisseria meningitidis

ncbi_submitter: National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention


ncbi_country: Netherlands: Oosterschelde estury; Lokkersnol

ncbi_organism_name: Betaproteobacteria bacterium

ncbi_submitter: Uppsala University


ncbi_organism_name: Clostridia bacterium

ncbi_submitter: Nanjing Agricultural University


ncbi_country: USA: AL

ncbi_isolation_source: soil

ncbi_organism_name: Listeria cossartiae subsp. cossartiae

ncbi_submitter: Cornell University

ncbi_taxonomy_unfiltered: d__Bacteria;x__Bacillati;p__Bacillota;c__Bacilli;o__Bacillales;f__Listeriaceae;g__Listeria;s__Listeria cossartiae;sb__Listeria cossartiae subsp. cossartiae


ncbi_country: Netherlands

ncbi_organism_name: Bacillus cereus

ncbi_submitter: University of Groningen